Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024631.t1 | XP_003626362.1 | 98 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 2.20E-80 | 308.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024631.t1 | Q02610 | 92.1 | 152 | 12 | 0 | 1 | 152 | 1 | 152 | 5.1e-78 | 291.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024631.t1 | B7FGV9 | 98.0 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 1.6e-80 | 308.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene71901 | MS.gene024631 | PPI |
| MS.gene62862 | MS.gene024631 | PPI |
| MS.gene011492 | MS.gene024631 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024631.t1 | MTR_7g114240 | 98.026 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 8.28e-105 | 296 |
| MS.gene024631.t1 | MTR_6g029200 | 70.199 | 151 | 44 | 1 | 2 | 151 | 8 | 158 | 1.56e-69 | 207 |
| MS.gene024631.t1 | MTR_7g114240 | 96.117 | 103 | 4 | 0 | 1 | 103 | 1 | 103 | 1.87e-68 | 203 |
| MS.gene024631.t1 | MTR_4g057240 | 69.014 | 142 | 43 | 1 | 9 | 150 | 63 | 203 | 1.75e-67 | 203 |
| MS.gene024631.t1 | MTR_6g029200 | 68.000 | 150 | 39 | 1 | 2 | 151 | 8 | 148 | 2.02e-65 | 196 |
| MS.gene024631.t1 | MTR_4g101820 | 34.234 | 111 | 65 | 2 | 13 | 123 | 165 | 267 | 1.08e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024631.t1 | AT1G08830 | 83.553 | 152 | 25 | 0 | 1 | 152 | 1 | 152 | 3.09e-88 | 254 |
| MS.gene024631.t1 | AT1G08830 | 83.553 | 152 | 25 | 0 | 1 | 152 | 1 | 152 | 3.09e-88 | 254 |
| MS.gene024631.t1 | AT2G28190 | 68.919 | 148 | 46 | 0 | 3 | 150 | 66 | 213 | 6.72e-71 | 213 |
| MS.gene024631.t1 | AT5G18100 | 64.667 | 150 | 53 | 0 | 2 | 151 | 8 | 157 | 3.17e-67 | 201 |
| MS.gene024631.t1 | AT5G18100 | 61.417 | 127 | 49 | 0 | 2 | 128 | 8 | 134 | 1.46e-52 | 163 |
| MS.gene024631.t1 | AT1G12520 | 32.143 | 112 | 68 | 2 | 13 | 124 | 36 | 139 | 3.00e-12 | 61.6 |
| MS.gene024631.t1 | AT1G12520 | 32.143 | 112 | 68 | 2 | 13 | 124 | 81 | 184 | 4.21e-12 | 62.0 |
| MS.gene024631.t1 | AT1G12520 | 32.143 | 112 | 68 | 2 | 13 | 124 | 172 | 275 | 1.20e-11 | 61.6 |
Find 58 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTTTGTTGTAGGTATTAT+TGG | 0.169884 | 7.4:+3005748 | MS.gene024631:intron |
| ATTCGACATGCTGGTGATTT+AGG | 0.204339 | 7.4:+3004522 | MS.gene024631:CDS |
| GGCTTCCATATCCATGCCTT+GGG | 0.292332 | 7.4:+3004142 | MS.gene024631:CDS |
| ACTGTGACCGGAAATCTTTC+TGG | 0.298064 | 7.4:+3004100 | MS.gene024631:CDS |
| GCCCTTCCTATGATTGAGTT+TGG | 0.330134 | 7.4:-3005049 | None:intergenic |
| CTTAAGACCAGAAAGATTTC+CGG | 0.340182 | 7.4:-3004107 | None:intergenic |
| GCACCGTGCTCCTTACCATT+AGG | 0.399615 | 7.4:-3004486 | None:intergenic |
| GTGAAGGCTGTGGCAGTTCT+TGG | 0.413587 | 7.4:+3003919 | MS.gene024631:CDS |
| GGTCTTAAGCCTGGCCTCCA+TGG | 0.414866 | 7.4:+3004121 | MS.gene024631:CDS |
| TGGCTTCCATATCCATGCCT+TGG | 0.423080 | 7.4:+3004141 | MS.gene024631:CDS |
| ACTGGACCAAACTCAATCAT+AGG | 0.429060 | 7.4:+3005043 | MS.gene024631:CDS |
| GCATGTCGAATCTCATCCTC+AGG | 0.433796 | 7.4:-3004510 | None:intergenic |
| CTTCACCATTACTGACAATC+AGG | 0.444656 | 7.4:+3004709 | MS.gene024631:CDS |
| ACAAATGGTTGCATGTCAAC+TGG | 0.450246 | 7.4:+3004172 | MS.gene024631:CDS |
| GGACCACATTTCAATCCTAA+TGG | 0.461674 | 7.4:+3004471 | MS.gene024631:intron |
| GTACCTTTCCCAAGATCATC+AGG | 0.463574 | 7.4:-3005091 | None:intergenic |
| CATGCCGATCCTGATGATCT+TGG | 0.469419 | 7.4:+3005082 | MS.gene024631:CDS |
| AGCTTCTCTCAGGAGGGAAA+TGG | 0.473090 | 7.4:+3003970 | MS.gene024631:CDS |
| ATGCCGATCCTGATGATCTT+GGG | 0.478164 | 7.4:+3005083 | MS.gene024631:CDS |
| AATGTCACTGTCGGCGATGA+TGG | 0.482153 | 7.4:+3004546 | MS.gene024631:CDS |
| TGGTACTATTAGCTTCTCTC+AGG | 0.486454 | 7.4:+3003960 | MS.gene024631:CDS |
| AGTTGACATGCAACCATTTG+TGG | 0.493212 | 7.4:-3004170 | None:intergenic |
| AATCTTTCTGGTCTTAAGCC+TGG | 0.494092 | 7.4:+3004112 | MS.gene024631:CDS |
| AGATTTCCGGTCACAGTGGT+TGG | 0.506019 | 7.4:-3004094 | None:intergenic |
| CATGAGCTTAGCAAGACTAC+TGG | 0.517405 | 7.4:+3005410 | MS.gene024631:CDS |
| ATATGGAAGCCATGGAGGCC+AGG | 0.527324 | 7.4:-3004130 | None:intergenic |
| AGGCATGGATATGGAAGCCA+TGG | 0.529289 | 7.4:-3004138 | None:intergenic |
| AGCAAGACTACTGGAAATGC+TGG | 0.533538 | 7.4:+3005419 | MS.gene024631:CDS |
| GCAGGTCCAACCACTGTGAC+CGG | 0.534164 | 7.4:+3004088 | MS.gene024631:intron |
| GTAGGTATTATTGGCTTGCA+AGG | 0.540422 | 7.4:+3005757 | MS.gene024631:intron |
| TGTTCACAGATCCCTCTCAC+TGG | 0.549506 | 7.4:+3005025 | MS.gene024631:intron |
| GGTAACAGTAATGATGTCTC+TGG | 0.553348 | 7.4:+3003940 | MS.gene024631:CDS |
| ACATTTCAATCCTAATGGTA+AGG | 0.554760 | 7.4:+3004476 | MS.gene024631:CDS |
| TACTATTAGCTTCTCTCAGG+AGG | 0.557121 | 7.4:+3003963 | MS.gene024631:CDS |
| GACCAAACTCAATCATAGGA+AGG | 0.559020 | 7.4:+3005047 | MS.gene024631:CDS |
| GTCAGTAATGGTGAAGCTTG+CGG | 0.567650 | 7.4:-3004702 | None:intergenic |
| ATTGAGTTTGGTCCAGTGAG+AGG | 0.575707 | 7.4:-3005037 | None:intergenic |
| TTGAGTTTGGTCCAGTGAGA+GGG | 0.579337 | 7.4:-3005036 | None:intergenic |
| GATTTAGGAAATGTCACTGT+CGG | 0.580192 | 7.4:+3004537 | MS.gene024631:CDS |
| TTGAACAATGGTGAAGGCTG+TGG | 0.590785 | 7.4:+3003909 | None:intergenic |
| ACATACCTGATTGTCAGTAA+TGG | 0.594183 | 7.4:-3004714 | None:intergenic |
| GAGGATGAGATTCGACATGC+TGG | 0.598972 | 7.4:+3004513 | MS.gene024631:CDS |
| ATCACATTGAACAATGGTGA+AGG | 0.610273 | 7.4:+3003903 | None:intergenic |
| GATCCTGATGATCTTGGGAA+AGG | 0.612525 | 7.4:+3005088 | MS.gene024631:CDS |
| GCTTCCATATCCATGCCTTG+GGG | 0.616548 | 7.4:+3004143 | MS.gene024631:CDS |
| AATCCTAATGGTAAGGAGCA+CGG | 0.625283 | 7.4:+3004483 | MS.gene024631:CDS |
| ACCAAACTCAATCATAGGAA+GGG | 0.632037 | 7.4:+3005048 | MS.gene024631:CDS |
| CATGGATATGGAAGCCATGG+AGG | 0.632624 | 7.4:-3004135 | None:intergenic |
| ACTATTAGCTTCTCTCAGGA+GGG | 0.637590 | 7.4:+3003964 | MS.gene024631:CDS |
| CATGTCGAATCTCATCCTCA+GGG | 0.638518 | 7.4:-3004509 | None:intergenic |
| TTTCCCAAGATCATCAGGAT+CGG | 0.641905 | 7.4:-3005086 | None:intergenic |
| TTACCATTAGGATTGAAATG+TGG | 0.656736 | 7.4:-3004474 | None:intergenic |
| CTTCCATATCCATGCCTTGG+GGG | 0.658207 | 7.4:+3004144 | MS.gene024631:CDS |
| TAAGGAGCACGGTGCCCCTG+AGG | 0.679963 | 7.4:+3004494 | MS.gene024631:CDS |
| AAGACTACTGGAAATGCTGG+TGG | 0.685336 | 7.4:+3005422 | MS.gene024631:CDS |
| AGAAAGATTTCCGGTCACAG+TGG | 0.704388 | 7.4:-3004098 | None:intergenic |
| ATGTCGAATCTCATCCTCAG+GGG | 0.738664 | 7.4:-3004508 | None:intergenic |
| GCTGGTGGCAGAGTAGCTTG+TGG | 0.784017 | 7.4:+3005437 | MS.gene024631:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAAAATAAAATCAAG+TGG | - | chr7.4:3004608-3004627 | None:intergenic | 15.0% |
| !! | ATTTCTAATGAATTATTCTA+GGG | + | chr7.4:3004763-3004782 | MS.gene024631:intron | 15.0% |
| !! | TAACCTATAAAACATATAAA+AGG | - | chr7.4:3004330-3004349 | None:intergenic | 15.0% |
| !!! | GTTTGATTTTAACTTTAAAA+TGG | + | chr7.4:3004653-3004672 | MS.gene024631:intron | 15.0% |
| !!! | TATCCTTTTATATGTTTTAT+AGG | + | chr7.4:3004324-3004343 | MS.gene024631:intron | 15.0% |
| !! | AGATAACAATTAGAAAATGA+AGG | - | chr7.4:3005703-3005722 | None:intergenic | 20.0% |
| !! | ATTATTCTAAATTGACAACA+AGG | + | chr7.4:3004969-3004988 | MS.gene024631:intron | 20.0% |
| !! | CATTTCTAATGAATTATTCT+AGG | + | chr7.4:3004762-3004781 | MS.gene024631:intron | 20.0% |
| !! | GATAACAATTAGAAAATGAA+GGG | - | chr7.4:3005702-3005721 | None:intergenic | 20.0% |
| !! | TTAAATAAATAATAGAAGCG+CGG | - | chr7.4:3004412-3004431 | None:intergenic | 20.0% |
| !!! | AAGAAAATGTTTCCATTTTT+GGG | - | chr7.4:3004827-3004846 | None:intergenic | 20.0% |
| !!! | GATTTTATTTTTTTTGTGAC+CGG | + | chr7.4:3004611-3004630 | MS.gene024631:intron | 20.0% |
| !!! | GTTTCATTTTTAATATCTTG+AGG | + | chr7.4:3004217-3004236 | MS.gene024631:intron | 20.0% |
| !!! | TAAGAAAATGTTTCCATTTT+TGG | - | chr7.4:3004828-3004847 | None:intergenic | 20.0% |
| !!! | TGTTGTCAATTTAGAATAAT+GGG | - | chr7.4:3004969-3004988 | None:intergenic | 20.0% |
| !!! | TTGTTGTCAATTTAGAATAA+TGG | - | chr7.4:3004970-3004989 | None:intergenic | 20.0% |
| ! | ATGAAACAAATTATTGTCCA+AGG | - | chr7.4:3004204-3004223 | None:intergenic | 25.0% |
| ! | TGAAAACTGAATCTTGAATT+TGG | - | chr7.4:3005678-3005697 | None:intergenic | 25.0% |
| !! | CTTTTGAATCTGTTTAATAC+AGG | + | chr7.4:3004450-3004469 | MS.gene024631:intron | 25.0% |
| !! | TGTTTTCAGTAACAAATTCA+AGG | - | chr7.4:3005617-3005636 | None:intergenic | 25.0% |
| !! | TTTTGCATAACATTTCATCT+CGG | + | chr7.4:3005369-3005388 | MS.gene024631:intron | 25.0% |
| !!! | AACCTTAATTTTTTGCATCA+CGG | - | chr7.4:3005530-3005549 | None:intergenic | 25.0% |
| !!! | AAGCACATTTTAAAGATAAC+CGG | - | chr7.4:3004633-3004652 | None:intergenic | 25.0% |
| !!! | TTTTAGTTATCTTCTTTTCC+AGG | + | chr7.4:3004582-3004601 | MS.gene024631:intron | 25.0% |
| !!! | TTTTTTAAACATTGACTGTG+CGG | + | chr7.4:3005491-3005510 | MS.gene024631:intron | 25.0% |
| AAAAATAAAATCAAGTGGCC+TGG | - | chr7.4:3004603-3004622 | None:intergenic | 30.0% | |
| AAACAAAAACTTACTCTTCG+CGG | - | chr7.4:3004019-3004038 | None:intergenic | 30.0% | |
| AACTTCCCTCAACAATAAAT+GGG | - | chr7.4:3005150-3005169 | None:intergenic | 30.0% | |
| AAGGTTCAAATGATCTTTAG+AGG | + | chr7.4:3005544-3005563 | MS.gene024631:intron | 30.0% | |
| AATAATACCTACAACAAACG+GGG | - | chr7.4:3005749-3005768 | None:intergenic | 30.0% | |
| AATTGTCCCATTTATTGTTG+AGG | + | chr7.4:3005141-3005160 | MS.gene024631:intron | 30.0% | |
| ACATTTCAATCCTAATGGTA+AGG | + | chr7.4:3004476-3004495 | MS.gene024631:CDS | 30.0% | |
| AGATTCATTCAAGCAAATTG+AGG | - | chr7.4:3004277-3004296 | None:intergenic | 30.0% | |
| ATTGTCCCATTTATTGTTGA+GGG | + | chr7.4:3005142-3005161 | MS.gene024631:intron | 30.0% | |
| ATTTGTGACGATCACTTTAT+AGG | - | chr7.4:3005235-3005254 | None:intergenic | 30.0% | |
| CAATAATACCTACAACAAAC+GGG | - | chr7.4:3005750-3005769 | None:intergenic | 30.0% | |
| CCAATAATACCTACAACAAA+CGG | - | chr7.4:3005751-3005770 | None:intergenic | 30.0% | |
| GATTAAAAGTTGAAACTCTC+AGG | - | chr7.4:3004995-3005014 | None:intergenic | 30.0% | |
| GATTCATTCAAGCAAATTGA+GGG | - | chr7.4:3004276-3004295 | None:intergenic | 30.0% | |
| GCAATACATGTTAATCGATT+TGG | - | chr7.4:3004061-3004080 | None:intergenic | 30.0% | |
| TAACTTCCCTCAACAATAAA+TGG | - | chr7.4:3005151-3005170 | None:intergenic | 30.0% | |
| TTACCATTAGGATTGAAATG+TGG | - | chr7.4:3004477-3004496 | None:intergenic | 30.0% | |
| TTGCTTGAATGAATCTAAAG+TGG | + | chr7.4:3004281-3004300 | MS.gene024631:intron | 30.0% | |
| !! | AACTTTAAAATGGTTTCCTC+TGG | + | chr7.4:3004663-3004682 | MS.gene024631:intron | 30.0% |
| !! | TTGGAAACACTTTTTGTGTT+TGG | + | chr7.4:3005181-3005200 | MS.gene024631:intron | 30.0% |
| AACACAATTCATTCTCGACT+TGG | - | chr7.4:3004367-3004386 | None:intergenic | 35.0% | |
| AAGTGATCGTCACAAATTCA+AGG | + | chr7.4:3005238-3005257 | MS.gene024631:intron | 35.0% | |
| ACATACCTGATTGTCAGTAA+TGG | - | chr7.4:3004717-3004736 | None:intergenic | 35.0% | |
| ACCAAACTCAATCATAGGAA+GGG | + | chr7.4:3005048-3005067 | MS.gene024631:CDS | 35.0% | |
| AGTGATCGTCACAAATTCAA+GGG | + | chr7.4:3005239-3005258 | MS.gene024631:intron | 35.0% | |
| CATGTTAAGCAACCCAAAAA+TGG | + | chr7.4:3004812-3004831 | MS.gene024631:intron | 35.0% | |
| CTTAAGACCAGAAAGATTTC+CGG | - | chr7.4:3004110-3004129 | None:intergenic | 35.0% | |
| GACTGTGCGGTATAAAAAAA+AGG | + | chr7.4:3005504-3005523 | MS.gene024631:intron | 35.0% | |
| GATTTAGGAAATGTCACTGT+CGG | + | chr7.4:3004537-3004556 | MS.gene024631:CDS | 35.0% | |
| TGTCATATTATGCTAGAGCT+AGG | - | chr7.4:3005294-3005313 | None:intergenic | 35.0% | |
| ! | GGGAAGTTAACACAATCTTT+TGG | + | chr7.4:3005162-3005181 | MS.gene024631:intron | 35.0% |
| !! | AATCATTAACTTGTGCCTTG+AGG | + | chr7.4:3004927-3004946 | MS.gene024631:intron | 35.0% |
| !! | ATCATTAACTTGTGCCTTGA+GGG | + | chr7.4:3004928-3004947 | MS.gene024631:intron | 35.0% |
| !! | CCGTTTGTTGTAGGTATTAT+TGG | + | chr7.4:3005748-3005767 | MS.gene024631:intron | 35.0% |
| AATCCTAATGGTAAGGAGCA+CGG | + | chr7.4:3004483-3004502 | MS.gene024631:CDS | 40.0% | |
| ACAAATGGTTGCATGTCAAC+TGG | + | chr7.4:3004172-3004191 | MS.gene024631:CDS | 40.0% | |
| ACATGTATTGCGAATTGTGC+AGG | + | chr7.4:3004070-3004089 | MS.gene024631:intron | 40.0% | |
| ACTGGACCAAACTCAATCAT+AGG | + | chr7.4:3005043-3005062 | MS.gene024631:CDS | 40.0% | |
| AGAACCTATGAGACAGTAAC+AGG | - | chr7.4:3005645-3005664 | None:intergenic | 40.0% | |
| AGGCACTATTGAGTATGAGT+CGG | + | chr7.4:3004237-3004256 | MS.gene024631:intron | 40.0% | |
| AGTTGACATGCAACCATTTG+TGG | - | chr7.4:3004173-3004192 | None:intergenic | 40.0% | |
| ATGTCAACTGGTAAAGTCCT+TGG | + | chr7.4:3004184-3004203 | MS.gene024631:intron | 40.0% | |
| ATTCGACATGCTGGTGATTT+AGG | + | chr7.4:3004522-3004541 | MS.gene024631:CDS | 40.0% | |
| CTTCACCATTACTGACAATC+AGG | + | chr7.4:3004709-3004728 | MS.gene024631:CDS | 40.0% | |
| GACCAAACTCAATCATAGGA+AGG | + | chr7.4:3005047-3005066 | MS.gene024631:CDS | 40.0% | |
| GGACCACATTTCAATCCTAA+TGG | + | chr7.4:3004471-3004490 | MS.gene024631:intron | 40.0% | |
| GGCCGTGATGCAAAAAATTA+AGG | + | chr7.4:3005525-3005544 | MS.gene024631:intron | 40.0% | |
| GGTAACAGTAATGATGTCTC+TGG | + | chr7.4:3003940-3003959 | MS.gene024631:CDS | 40.0% | |
| TGGTAAGTTTCAACAGCCTT+TGG | + | chr7.4:3003990-3004009 | MS.gene024631:intron | 40.0% | |
| TTGCTTAACATGTGCCCTAA+GGG | - | chr7.4:3004804-3004823 | None:intergenic | 40.0% | |
| TTGTCCTGTTACTGTCTCAT+AGG | + | chr7.4:3005638-3005657 | MS.gene024631:intron | 40.0% | |
| TTTCCCAAGATCATCAGGAT+CGG | - | chr7.4:3005089-3005108 | None:intergenic | 40.0% | |
| ! | ACTATTAGCTTCTCTCAGGA+GGG | + | chr7.4:3003964-3003983 | MS.gene024631:CDS | 40.0% |
| ! | GTGAGAAGTTCTGACAATCA+TGG | + | chr7.4:3005587-3005606 | MS.gene024631:intron | 40.0% |
| ! | TACTATTAGCTTCTCTCAGG+AGG | + | chr7.4:3003963-3003982 | MS.gene024631:CDS | 40.0% |
| ! | TGGTACTATTAGCTTCTCTC+AGG | + | chr7.4:3003960-3003979 | MS.gene024631:CDS | 40.0% |
| !! | AATCTTTCTGGTCTTAAGCC+TGG | + | chr7.4:3004112-3004131 | MS.gene024631:CDS | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | - | chr7.4:3004945-3004964 | None:intergenic | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | + | chr7.4:3004787-3004806 | MS.gene024631:intron | 40.0% |
| !! | GTAGGTATTATTGGCTTGCA+AGG | + | chr7.4:3005757-3005776 | MS.gene024631:intron | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+AGG | + | chr7.4:3004786-3004805 | MS.gene024631:intron | 40.0% |
| AAGACTACTGGAAATGCTGG+TGG | + | chr7.4:3005422-3005441 | MS.gene024631:CDS | 45.0% | |
| ACTGTGACCGGAAATCTTTC+TGG | + | chr7.4:3004100-3004119 | MS.gene024631:CDS | 45.0% | |
| AGAAAGATTTCCGGTCACAG+TGG | - | chr7.4:3004101-3004120 | None:intergenic | 45.0% | |
| AGCAAGACTACTGGAAATGC+TGG | + | chr7.4:3005419-3005438 | MS.gene024631:CDS | 45.0% | |
| ATGCCGATCCTGATGATCTT+GGG | + | chr7.4:3005083-3005102 | MS.gene024631:CDS | 45.0% | |
| ATGTCGAATCTCATCCTCAG+GGG | - | chr7.4:3004511-3004530 | None:intergenic | 45.0% | |
| ATTGAGTTTGGTCCAGTGAG+AGG | - | chr7.4:3005040-3005059 | None:intergenic | 45.0% | |
| CATGAGCTTAGCAAGACTAC+TGG | + | chr7.4:3005410-3005429 | MS.gene024631:CDS | 45.0% | |
| CATGTCGAATCTCATCCTCA+GGG | - | chr7.4:3004512-3004531 | None:intergenic | 45.0% | |
| GATCCTGATGATCTTGGGAA+AGG | + | chr7.4:3005088-3005107 | MS.gene024631:CDS | 45.0% | |
| GCCCTTCCTATGATTGAGTT+TGG | - | chr7.4:3005052-3005071 | None:intergenic | 45.0% | |
| GGCACTATTGAGTATGAGTC+GGG | + | chr7.4:3004238-3004257 | MS.gene024631:intron | 45.0% | |
| GTACCTTTCCCAAGATCATC+AGG | - | chr7.4:3005094-3005113 | None:intergenic | 45.0% | |
| GTCAGTAATGGTGAAGCTTG+CGG | - | chr7.4:3004705-3004724 | None:intergenic | 45.0% | |
| GTTGCTTAACATGTGCCCTA+AGG | - | chr7.4:3004805-3004824 | None:intergenic | 45.0% | |
| TCATCTCGGTACTGCTGTAT+AGG | + | chr7.4:3005383-3005402 | MS.gene024631:intron | 45.0% | |
| TTCCTCTGGTTGTGTAACTC+AGG | + | chr7.4:3004677-3004696 | MS.gene024631:intron | 45.0% | |
| TTCCTGAGTTACACAACCAG+AGG | - | chr7.4:3004682-3004701 | None:intergenic | 45.0% | |
| TTGAGTTTGGTCCAGTGAGA+GGG | - | chr7.4:3005039-3005058 | None:intergenic | 45.0% | |
| !! | ATCTGTTCCCCGTTTGTTGT+AGG | + | chr7.4:3005739-3005758 | MS.gene024631:intron | 45.0% |
| AATGTCACTGTCGGCGATGA+TGG | + | chr7.4:3004546-3004565 | MS.gene024631:CDS | 50.0% | |
| AGATTTCCGGTCACAGTGGT+TGG | - | chr7.4:3004097-3004116 | None:intergenic | 50.0% | |
| AGCTTCTCTCAGGAGGGAAA+TGG | + | chr7.4:3003970-3003989 | MS.gene024631:CDS | 50.0% | |
| AGGCATGGATATGGAAGCCA+TGG | - | chr7.4:3004141-3004160 | None:intergenic | 50.0% | |
| CATGCCGATCCTGATGATCT+TGG | + | chr7.4:3005082-3005101 | MS.gene024631:CDS | 50.0% | |
| CATGGATATGGAAGCCATGG+AGG | - | chr7.4:3004138-3004157 | None:intergenic | 50.0% | |
| CTTCCATATCCATGCCTTGG+GGG | + | chr7.4:3004144-3004163 | MS.gene024631:CDS | 50.0% | |
| GAGGATGAGATTCGACATGC+TGG | + | chr7.4:3004513-3004532 | MS.gene024631:CDS | 50.0% | |
| GCATGTCGAATCTCATCCTC+AGG | - | chr7.4:3004513-3004532 | None:intergenic | 50.0% | |
| GCTTCCATATCCATGCCTTG+GGG | + | chr7.4:3004143-3004162 | MS.gene024631:CDS | 50.0% | |
| GGCTTCCATATCCATGCCTT+GGG | + | chr7.4:3004142-3004161 | MS.gene024631:CDS | 50.0% | |
| TCTCGGTACTGCTGTATAGG+TGG | + | chr7.4:3005386-3005405 | MS.gene024631:intron | 50.0% | |
| TGGCTTCCATATCCATGCCT+TGG | + | chr7.4:3004141-3004160 | MS.gene024631:CDS | 50.0% | |
| TGTTCACAGATCCCTCTCAC+TGG | + | chr7.4:3005025-3005044 | MS.gene024631:intron | 50.0% | |
| TTACTCTTCGCGGAGACCAA+AGG | - | chr7.4:3004009-3004028 | None:intergenic | 50.0% | |
| ACCATTTGTGGTGTCCCCCA+AGG | - | chr7.4:3004161-3004180 | None:intergenic | 55.0% | |
| ATATGGAAGCCATGGAGGCC+AGG | - | chr7.4:3004133-3004152 | None:intergenic | 55.0% | |
| GCACCGTGCTCCTTACCATT+AGG | - | chr7.4:3004489-3004508 | None:intergenic | 55.0% | |
| GTGAAGGCTGTGGCAGTTCT+TGG | + | chr7.4:3003919-3003938 | MS.gene024631:CDS | 55.0% | |
| TGTCCCCCAAGGCATGGATA+TGG | - | chr7.4:3004150-3004169 | None:intergenic | 55.0% | |
| ! | CACTGTCGGCGATGATGGTA+TGG | + | chr7.4:3004551-3004570 | MS.gene024631:intron | 55.0% |
| GCAGGTCCAACCACTGTGAC+CGG | + | chr7.4:3004088-3004107 | MS.gene024631:intron | 60.0% | |
| GCCTTGGGGGACACCACAAA+TGG | + | chr7.4:3004157-3004176 | MS.gene024631:CDS | 60.0% | |
| GCTGGTGGCAGAGTAGCTTG+TGG | + | chr7.4:3005437-3005456 | MS.gene024631:CDS | 60.0% | |
| GGTCTTAAGCCTGGCCTCCA+TGG | + | chr7.4:3004121-3004140 | MS.gene024631:CDS | 60.0% | |
| TTGTGGTGTCCCCCAAGGCA+TGG | - | chr7.4:3004156-3004175 | None:intergenic | 60.0% | |
| ! | TAAGGAGCACGGTGCCCCTG+AGG | + | chr7.4:3004494-3004513 | MS.gene024631:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 3003916 | 3005783 | 3003916 | ID=MS.gene024631 |
| chr7.4 | mRNA | 3003916 | 3005783 | 3003916 | ID=MS.gene024631.t1;Parent=MS.gene024631 |
| chr7.4 | exon | 3003916 | 3003991 | 3003916 | ID=MS.gene024631.t1.exon1;Parent=MS.gene024631.t1 |
| chr7.4 | CDS | 3003916 | 3003991 | 3003916 | ID=cds.MS.gene024631.t1;Parent=MS.gene024631.t1 |
| chr7.4 | exon | 3004092 | 3004193 | 3004092 | ID=MS.gene024631.t1.exon2;Parent=MS.gene024631.t1 |
| chr7.4 | CDS | 3004092 | 3004193 | 3004092 | ID=cds.MS.gene024631.t1;Parent=MS.gene024631.t1 |
| chr7.4 | exon | 3004472 | 3004567 | 3004472 | ID=MS.gene024631.t1.exon3;Parent=MS.gene024631.t1 |
| chr7.4 | CDS | 3004472 | 3004567 | 3004472 | ID=cds.MS.gene024631.t1;Parent=MS.gene024631.t1 |
| chr7.4 | exon | 3004699 | 3004730 | 3004699 | ID=MS.gene024631.t1.exon4;Parent=MS.gene024631.t1 |
| chr7.4 | CDS | 3004699 | 3004730 | 3004699 | ID=cds.MS.gene024631.t1;Parent=MS.gene024631.t1 |
| chr7.4 | exon | 3005034 | 3005109 | 3005034 | ID=MS.gene024631.t1.exon5;Parent=MS.gene024631.t1 |
| chr7.4 | CDS | 3005034 | 3005109 | 3005034 | ID=cds.MS.gene024631.t1;Parent=MS.gene024631.t1 |
| chr7.4 | exon | 3005405 | 3005458 | 3005405 | ID=MS.gene024631.t1.exon6;Parent=MS.gene024631.t1 |
| chr7.4 | CDS | 3005405 | 3005458 | 3005405 | ID=cds.MS.gene024631.t1;Parent=MS.gene024631.t1 |
| chr7.4 | exon | 3005761 | 3005783 | 3005761 | ID=MS.gene024631.t1.exon7;Parent=MS.gene024631.t1 |
| chr7.4 | CDS | 3005761 | 3005783 | 3005761 | ID=cds.MS.gene024631.t1;Parent=MS.gene024631.t1 |
| Gene Sequence |
| Protein sequence |
