Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024708.t1 | XP_003610951.1 | 98.3 | 360 | 5 | 1 | 1 | 359 | 1 | 360 | 5.40E-202 | 713.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024708.t1 | Q9T0G0 | 67.0 | 349 | 107 | 4 | 1 | 347 | 2 | 344 | 2.0e-133 | 476.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024708.t1 | G7K984 | 98.3 | 360 | 5 | 1 | 1 | 359 | 1 | 360 | 3.9e-202 | 713.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene063266 | MS.gene024708 | PPI |
| MS.gene024708 | MS.gene000539 | PPI |
| MS.gene024708 | MS.gene030460 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024708.t1 | MTR_5g008850 | 98.061 | 361 | 6 | 1 | 1 | 360 | 1 | 361 | 0.0 | 730 |
| MS.gene024708.t1 | MTR_8g096620 | 43.887 | 319 | 162 | 6 | 1 | 311 | 1 | 310 | 1.51e-79 | 247 |
| MS.gene024708.t1 | MTR_8g096580 | 40.323 | 310 | 170 | 4 | 1 | 309 | 1 | 296 | 1.37e-73 | 231 |
| MS.gene024708.t1 | MTR_8g096610 | 31.776 | 214 | 111 | 9 | 103 | 309 | 31 | 216 | 7.00e-16 | 76.6 |
| MS.gene024708.t1 | MTR_1g082760 | 25.210 | 238 | 161 | 6 | 38 | 267 | 33 | 261 | 1.79e-12 | 67.4 |
| MS.gene024708.t1 | MTR_7g113650 | 23.137 | 255 | 179 | 6 | 38 | 284 | 33 | 278 | 1.47e-11 | 64.7 |
| MS.gene024708.t1 | MTR_7g080410 | 27.962 | 211 | 128 | 8 | 43 | 241 | 36 | 234 | 4.40e-11 | 63.5 |
| MS.gene024708.t1 | MTR_7g080410 | 27.962 | 211 | 128 | 8 | 43 | 241 | 36 | 234 | 5.57e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024708.t1 | AT4G10020 | 67.049 | 349 | 107 | 4 | 1 | 347 | 2 | 344 | 2.74e-174 | 490 |
| MS.gene024708.t1 | AT5G50600 | 43.949 | 314 | 168 | 2 | 1 | 311 | 1 | 309 | 3.13e-84 | 259 |
| MS.gene024708.t1 | AT5G50700 | 43.949 | 314 | 168 | 2 | 1 | 311 | 1 | 309 | 3.13e-84 | 259 |
| MS.gene024708.t1 | AT3G47350 | 37.908 | 306 | 175 | 3 | 1 | 306 | 1 | 291 | 2.43e-69 | 220 |
| MS.gene024708.t1 | AT5G50690 | 39.803 | 304 | 171 | 2 | 1 | 304 | 1 | 292 | 7.38e-69 | 218 |
| MS.gene024708.t1 | AT5G50590 | 39.803 | 304 | 171 | 2 | 1 | 304 | 1 | 292 | 7.38e-69 | 218 |
| MS.gene024708.t1 | AT5G50770 | 38.730 | 315 | 185 | 2 | 1 | 312 | 1 | 310 | 4.51e-68 | 218 |
| MS.gene024708.t1 | AT3G47360 | 36.013 | 311 | 185 | 2 | 1 | 311 | 1 | 297 | 2.97e-62 | 201 |
| MS.gene024708.t1 | AT3G47350 | 40.000 | 255 | 147 | 2 | 1 | 255 | 1 | 249 | 5.59e-62 | 201 |
| MS.gene024708.t1 | AT5G50690 | 42.276 | 246 | 137 | 1 | 1 | 246 | 1 | 241 | 1.90e-59 | 192 |
| MS.gene024708.t1 | AT5G50590 | 42.276 | 246 | 137 | 1 | 1 | 246 | 1 | 241 | 1.90e-59 | 192 |
| MS.gene024708.t1 | AT3G47350 | 32.680 | 306 | 147 | 5 | 1 | 306 | 1 | 247 | 1.99e-46 | 159 |
| MS.gene024708.t1 | AT3G05260 | 26.471 | 238 | 157 | 8 | 38 | 267 | 30 | 257 | 1.12e-13 | 71.2 |
| MS.gene024708.t1 | AT3G03330 | 25.758 | 198 | 136 | 6 | 43 | 234 | 39 | 231 | 1.37e-11 | 65.5 |
Find 96 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAGAGTTTCTTCTTATTT+AGG | 0.129280 | 5.4:-3669412 | MS.gene024708:CDS |
| ACCACGACCAAAGACATTTA+TGG | 0.185510 | 5.4:+3671067 | None:intergenic |
| GGAGAGTTTCTTCTTATTTA+GGG | 0.241156 | 5.4:-3669411 | MS.gene024708:CDS |
| CCTTGTAAATACAGTAAGTT+TGG | 0.278909 | 5.4:-3670659 | MS.gene024708:CDS |
| TGGCTCTTTAACTATAATTA+TGG | 0.280186 | 5.4:-3671403 | MS.gene024708:CDS |
| ATGTTCTCAATTGGGCATTT+AGG | 0.291988 | 5.4:-3669459 | MS.gene024708:CDS |
| AATGAAACCATAAATGTCTT+TGG | 0.311625 | 5.4:-3671074 | MS.gene024708:CDS |
| CGAAGAGAGCATAGGCTAAT+AGG | 0.322565 | 5.4:-3671188 | MS.gene024708:CDS |
| TTGCTCCAAATGTTCTCAAT+TGG | 0.334210 | 5.4:-3669468 | MS.gene024708:CDS |
| CTATAATTATGGTGAAGATA+TGG | 0.336256 | 5.4:-3671392 | MS.gene024708:CDS |
| AGCAAGACATGTTATGATTA+TGG | 0.339422 | 5.4:-3671138 | MS.gene024708:CDS |
| TGATGTATTCTTGCTGTATA+GGG | 0.342416 | 5.4:-3669494 | MS.gene024708:CDS |
| ATGATGTATTCTTGCTGTAT+AGG | 0.353634 | 5.4:-3669495 | MS.gene024708:CDS |
| GCCAATGTGATCAAACTTGC+TGG | 0.376064 | 5.4:+3671466 | None:intergenic |
| AATGCCCAATTGAGAACATT+TGG | 0.386127 | 5.4:+3669463 | None:intergenic |
| TGCTCCAAATGTTCTCAATT+GGG | 0.404590 | 5.4:-3669467 | MS.gene024708:CDS |
| TAATAACACGACCGTTGCTT+TGG | 0.410977 | 5.4:+3670397 | None:intergenic |
| TGGTATGGGGAGACCTATGC+TGG | 0.410985 | 5.4:-3669359 | MS.gene024708:CDS |
| TTGCATATGAGTATGCAATA+AGG | 0.412653 | 5.4:-3671235 | MS.gene024708:CDS |
| TTGCCAAGGATGAGTTTGTT+TGG | 0.413187 | 5.4:-3670345 | MS.gene024708:CDS |
| ATGGTACCACTTACTTTCTC+TGG | 0.418513 | 5.4:-3669310 | MS.gene024708:CDS |
| AAACTCTCCTTGTCCCTTGT+GGG | 0.451143 | 5.4:+3669425 | None:intergenic |
| GAAATTCTCACCAAGAGAAC+AGG | 0.452904 | 5.4:+3670592 | None:intergenic |
| ATGCTGGAGGGAACTTCTCC+TGG | 0.469941 | 5.4:-3669343 | MS.gene024708:CDS |
| TGACAATGTCACTGGTGGTA+TGG | 0.472989 | 5.4:-3669374 | MS.gene024708:CDS |
| GACAATGTCACTGGTGGTAT+GGG | 0.478021 | 5.4:-3669373 | MS.gene024708:CDS |
| CTTGTAAATACAGTAAGTTT+GGG | 0.481490 | 5.4:-3670658 | MS.gene024708:CDS |
| GCTGAGAATGCAAGGCGAAT+CGG | 0.483692 | 5.4:-3671161 | MS.gene024708:CDS |
| GTTTCTTCTTATTTAGGGAC+AGG | 0.486130 | 5.4:-3669406 | MS.gene024708:CDS |
| CATATGTGAAGTTTCCTAGT+TGG | 0.490972 | 5.4:-3669519 | MS.gene024708:CDS |
| CCAAACTTACTGTATTTACA+AGG | 0.495174 | 5.4:+3670659 | None:intergenic |
| TTTGCAAGGTTGATTGTAAG+TGG | 0.495388 | 5.4:-3669559 | MS.gene024708:CDS |
| AGTAAAGTTGTCATCATCAC+TGG | 0.495753 | 5.4:-3671367 | MS.gene024708:CDS |
| ACTGGAGCATCTTCTGCCAT+TGG | 0.496925 | 5.4:-3671349 | MS.gene024708:CDS |
| ATAGCAACACACGGTTGGAT+TGG | 0.504224 | 5.4:-3670101 | MS.gene024708:CDS |
| ACCATAAATGTCTTTGGTCG+TGG | 0.504643 | 5.4:-3671068 | MS.gene024708:intron |
| GAGAGCAAATTTAATGTTGG+TGG | 0.506436 | 5.4:-3671213 | MS.gene024708:CDS |
| CCGTTGCTTTGGTGAAGGTA+AGG | 0.507356 | 5.4:+3670408 | None:intergenic |
| AAGGAGAGCAAATTTAATGT+TGG | 0.513576 | 5.4:-3671216 | MS.gene024708:CDS |
| TGATCACATTGGCTTTCTCA+TGG | 0.514950 | 5.4:-3671456 | MS.gene024708:CDS |
| TCAATGCATCAGTTGAGAGT+TGG | 0.517394 | 5.4:-3670374 | MS.gene024708:CDS |
| GGTACCATCCCTGTGTGTCC+AGG | 0.522954 | 5.4:+3669325 | None:intergenic |
| ACACCAAACAAACTCATCCT+TGG | 0.527782 | 5.4:+3670342 | None:intergenic |
| TTTGAATTGAAAGACGAGGT+TGG | 0.530727 | 5.4:-3670131 | MS.gene024708:CDS |
| GAAACTCTCCTTGTCCCTTG+TGG | 0.532546 | 5.4:+3669424 | None:intergenic |
| CAAGTTCATGCTAGAGGAGG+GGG | 0.534060 | 5.4:-3670060 | MS.gene024708:CDS |
| GGAACTTCTCCTGGACACAC+AGG | 0.534462 | 5.4:-3669334 | MS.gene024708:CDS |
| TTGGCAACTTGCCTCTCCAA+TGG | 0.547635 | 5.4:+3671333 | None:intergenic |
| TGCAAGGTTGATTGTAAGTG+GGG | 0.547799 | 5.4:-3669557 | MS.gene024708:CDS |
| TTGCAAGGTTGATTGTAAGT+GGG | 0.549501 | 5.4:-3669558 | MS.gene024708:CDS |
| GTTTCCTCAATGCTTGTGAG+TGG | 0.554913 | 5.4:-3671423 | MS.gene024708:CDS |
| TCCAGCAAGTTTGATCACAT+TGG | 0.555899 | 5.4:-3671467 | MS.gene024708:CDS |
| ATTGTAAGTGGGGCATGTAG+AGG | 0.556954 | 5.4:-3669547 | MS.gene024708:CDS |
| AGAGTTGGTTACCTTTGCCA+AGG | 0.560338 | 5.4:-3670359 | MS.gene024708:CDS |
| TTATTTCCCCACAAGGGACA+AGG | 0.562417 | 5.4:-3669432 | MS.gene024708:CDS |
| GGCAAGTTCATGCTAGAGGA+GGG | 0.566062 | 5.4:-3670062 | MS.gene024708:CDS |
| AGATCCCTTGACAATGTCAC+TGG | 0.566679 | 5.4:-3669382 | MS.gene024708:CDS |
| GGGGAATGTTTATCCGACGT+TGG | 0.567658 | 5.4:-3670439 | MS.gene024708:CDS |
| GAATGTTTATCCGACGTTGG+TGG | 0.571933 | 5.4:-3670436 | MS.gene024708:CDS |
| TAGGAATTGCTGAGAATGCA+AGG | 0.574860 | 5.4:-3671169 | MS.gene024708:CDS |
| AACTCTCCTTGTCCCTTGTG+GGG | 0.578247 | 5.4:+3669426 | None:intergenic |
| TAACGATAGCAACACACGGT+TGG | 0.578942 | 5.4:-3670106 | MS.gene024708:CDS |
| CACGACCGTTGCTTTGGTGA+AGG | 0.579262 | 5.4:+3670403 | None:intergenic |
| GCATTGAGGAAACAAAGTGC+TGG | 0.583396 | 5.4:+3671433 | None:intergenic |
| GGAGAAGTTCCCTCCAGCAT+AGG | 0.592227 | 5.4:+3669346 | None:intergenic |
| GCAAGTTCATGCTAGAGGAG+GGG | 0.593135 | 5.4:-3670061 | MS.gene024708:CDS |
| CAATGGCCAGAGAAAGTAAG+TGG | 0.598388 | 5.4:+3669304 | None:intergenic |
| AGGCAAGTTCATGCTAGAGG+AGG | 0.598499 | 5.4:-3670063 | MS.gene024708:CDS |
| GGCTTCTTATTTCCCCACAA+GGG | 0.606717 | 5.4:-3669438 | MS.gene024708:CDS |
| AGAGCCACTCACAAGCATTG+AGG | 0.607148 | 5.4:+3671419 | None:intergenic |
| TACCACCAGTGACATTGTCA+AGG | 0.609317 | 5.4:+3669377 | None:intergenic |
| GTAATGTAAGGCTGCAAAGG+CGG | 0.615032 | 5.4:-3670183 | MS.gene024708:intron |
| AGCATCTTCTGCCATTGGAG+AGG | 0.616348 | 5.4:-3671344 | MS.gene024708:CDS |
| AACAAACTCATCCTTGGCAA+AGG | 0.616529 | 5.4:+3670348 | None:intergenic |
| TTCTCCTGGACACACAGGGA+TGG | 0.616744 | 5.4:-3669329 | MS.gene024708:CDS |
| AGGCTTCTTATTTCCCCACA+AGG | 0.623149 | 5.4:-3669439 | MS.gene024708:CDS |
| CATGTAATGTAAGGCTGCAA+AGG | 0.625136 | 5.4:-3670186 | MS.gene024708:intron |
| ATGGGGAGACCTATGCTGGA+GGG | 0.627461 | 5.4:-3669355 | MS.gene024708:CDS |
| TATGGCAGCAGATGTTGTCA+AGG | 0.628152 | 5.4:-3671120 | MS.gene024708:CDS |
| AAGAATACATCATACCAACT+AGG | 0.632930 | 5.4:+3669505 | None:intergenic |
| AAGCAGTAGAAGAATTTGCA+AGG | 0.634067 | 5.4:-3669573 | MS.gene024708:CDS |
| CCTTACCTTCACCAAAGCAA+CGG | 0.636544 | 5.4:-3670408 | MS.gene024708:CDS |
| TGGTGGCACGAAGAGAGCAT+AGG | 0.647406 | 5.4:-3671196 | MS.gene024708:CDS |
| ACCACCAGTGACATTGTCAA+GGG | 0.648534 | 5.4:+3669378 | None:intergenic |
| GAACTTCTCCTGGACACACA+GGG | 0.649444 | 5.4:-3669333 | MS.gene024708:CDS |
| TCCCTTGACAATGTCACTGG+TGG | 0.652792 | 5.4:-3669379 | MS.gene024708:CDS |
| GCGATTTGAATTGAAAGACG+AGG | 0.653464 | 5.4:-3670135 | MS.gene024708:CDS |
| GAGAGGCAAGTTCATGCTAG+AGG | 0.654649 | 5.4:-3670066 | MS.gene024708:CDS |
| ATGTGATCAAACTTGCTGGA+GGG | 0.657173 | 5.4:+3671470 | None:intergenic |
| TAAGGAAGAGCCACCAACGT+CGG | 0.674125 | 5.4:+3670426 | None:intergenic |
| TGAATTTAGATGCATGTGAG+TGG | 0.689132 | 5.4:-3669598 | MS.gene024708:intron |
| AATGTGATCAAACTTGCTGG+AGG | 0.689941 | 5.4:+3671469 | None:intergenic |
| TATGGGGAGACCTATGCTGG+AGG | 0.691097 | 5.4:-3669356 | MS.gene024708:CDS |
| ACAATGTCACTGGTGGTATG+GGG | 0.698558 | 5.4:-3669372 | MS.gene024708:CDS |
| ATTGGAAGTGAAATGACGAG+AGG | 0.705490 | 5.4:-3670083 | MS.gene024708:CDS |
| GGAGTAACGATAGCAACACA+CGG | 0.756771 | 5.4:-3670110 | MS.gene024708:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAATAGCTTATATAT+AGG | - | chr5.4:3669890-3669909 | MS.gene024708:intron | 10.0% |
| !!! | CTTTTAATTTTAAATGAATT+AGG | + | chr5.4:3670277-3670296 | None:intergenic | 10.0% |
| !!! | TTTTTAGGATATTAATTTTT+GGG | - | chr5.4:3670348-3670367 | MS.gene024708:CDS | 10.0% |
| !! | ATGTAATTATGGATAAAATT+AGG | - | chr5.4:3671061-3671080 | MS.gene024708:intron | 15.0% |
| !! | TAACAATTAACATTTAATGT+TGG | - | chr5.4:3670931-3670950 | MS.gene024708:intron | 15.0% |
| !! | TTTATTAATTTAAAGAGTCA+TGG | + | chr5.4:3670091-3670110 | None:intergenic | 15.0% |
| !!! | AAACTTTAATACAAACATTT+TGG | + | chr5.4:3669497-3669516 | None:intergenic | 15.0% |
| !!! | CTTTTTAGGATATTAATTTT+TGG | - | chr5.4:3670347-3670366 | MS.gene024708:CDS | 15.0% |
| !!! | TAATTTTATCCATAATTACA+TGG | + | chr5.4:3671062-3671081 | None:intergenic | 15.0% |
| !!! | TTTTAGGATATTAATTTTTG+GGG | - | chr5.4:3670349-3670368 | MS.gene024708:CDS | 15.0% |
| !! | AATGATATACCATGTAATTA+TGG | - | chr5.4:3671050-3671069 | MS.gene024708:intron | 20.0% |
| !! | ATCATTCTATTGATAAAACA+CGG | + | chr5.4:3671036-3671055 | None:intergenic | 20.0% |
| !! | CATATTATTATGAGATAATG+TGG | - | chr5.4:3670323-3670342 | MS.gene024708:intron | 20.0% |
| !! | TAGAATTAGAGTATAAACTT+AGG | + | chr5.4:3670048-3670067 | None:intergenic | 20.0% |
| !!! | TTTAGGATATTAATTTTTGG+GGG | - | chr5.4:3670350-3670369 | MS.gene024708:CDS | 20.0% |
| ! | AATGAAACCATAAATGTCTT+TGG | - | chr5.4:3669734-3669753 | MS.gene024708:intron | 25.0% |
| ! | ACACTATAGTTATAGTCAAT+TGG | - | chr5.4:3670834-3670853 | MS.gene024708:intron | 25.0% |
| ! | AGCAAAAAAGTAAATGTATG+TGG | - | chr5.4:3671119-3671138 | MS.gene024708:CDS | 25.0% |
| ! | CAAATTAGTATGTACTACTT+CGG | + | chr5.4:3671171-3671190 | None:intergenic | 25.0% |
| ! | CTATAATTATGGTGAAGATA+TGG | - | chr5.4:3669416-3669435 | MS.gene024708:CDS | 25.0% |
| ! | CTTGTAAATACAGTAAGTTT+GGG | - | chr5.4:3670150-3670169 | MS.gene024708:CDS | 25.0% |
| ! | TATTATGTGCATGTAATGTA+AGG | - | chr5.4:3670613-3670632 | MS.gene024708:CDS | 25.0% |
| ! | TGGCTCTTTAACTATAATTA+TGG | - | chr5.4:3669405-3669424 | MS.gene024708:CDS | 25.0% |
| !!! | GTTTTTTCATGTGTATGATT+TGG | - | chr5.4:3669537-3669556 | MS.gene024708:CDS | 25.0% |
| !!! | TTTAATTTTGCTGTTCTGTT+TGG | - | chr5.4:3670573-3670592 | MS.gene024708:intron | 25.0% |
| AAGAATACATCATACCAACT+AGG | + | chr5.4:3671306-3671325 | None:intergenic | 30.0% | |
| AAGGAGAGCAAATTTAATGT+TGG | - | chr5.4:3669592-3669611 | MS.gene024708:CDS | 30.0% | |
| AATATGAATGATGTGAAAGG+TGG | + | chr5.4:3670005-3670024 | None:intergenic | 30.0% | |
| ACATTAAGCTTATTGCACTA+AGG | - | chr5.4:3669967-3669986 | MS.gene024708:intron | 30.0% | |
| AGCAAGACATGTTATGATTA+TGG | - | chr5.4:3669670-3669689 | MS.gene024708:intron | 30.0% | |
| CCAAACTTACTGTATTTACA+AGG | + | chr5.4:3670152-3670171 | None:intergenic | 30.0% | |
| CCTTGTAAATACAGTAAGTT+TGG | - | chr5.4:3670149-3670168 | MS.gene024708:CDS | 30.0% | |
| TAAACACTTGTGAGAATGTT+CGG | - | chr5.4:3669805-3669824 | MS.gene024708:intron | 30.0% | |
| TAGTTATAGTCAATTGGACA+TGG | - | chr5.4:3670840-3670859 | MS.gene024708:intron | 30.0% | |
| TATAGCTTATATGAAGCAGT+TGG | - | chr5.4:3669848-3669867 | MS.gene024708:intron | 30.0% | |
| TGCAATATGAATGATGTGAA+AGG | + | chr5.4:3670008-3670027 | None:intergenic | 30.0% | |
| TGGATACGTCAAAATTTGAA+AGG | - | chr5.4:3670951-3670970 | MS.gene024708:intron | 30.0% | |
| TTGCATATGAGTATGCAATA+AGG | - | chr5.4:3669573-3669592 | MS.gene024708:CDS | 30.0% | |
| ! | AGGAGAGTTTCTTCTTATTT+AGG | - | chr5.4:3671396-3671415 | MS.gene024708:CDS | 30.0% |
| ! | ATGATGTATTCTTGCTGTAT+AGG | - | chr5.4:3671313-3671332 | MS.gene024708:intron | 30.0% |
| ! | GGAGAGTTTCTTCTTATTTA+GGG | - | chr5.4:3671397-3671416 | MS.gene024708:CDS | 30.0% |
| ! | TGAGATAATGTGGTCTTTTT+AGG | - | chr5.4:3670333-3670352 | MS.gene024708:intron | 30.0% |
| ! | TGATGTATTCTTGCTGTATA+GGG | - | chr5.4:3671314-3671333 | MS.gene024708:intron | 30.0% |
| !!! | TGCAAATGCAATTTTTAGCA+AGG | + | chr5.4:3670809-3670828 | None:intergenic | 30.0% |
| AAGCAGTAGAAGAATTTGCA+AGG | - | chr5.4:3671235-3671254 | MS.gene024708:CDS | 35.0% | |
| AATGCCCAATTGAGAACATT+TGG | + | chr5.4:3671348-3671367 | None:intergenic | 35.0% | |
| AGTAAAGTTGTCATCATCAC+TGG | - | chr5.4:3669441-3669460 | MS.gene024708:CDS | 35.0% | |
| ATGTTCTCAATTGGGCATTT+AGG | - | chr5.4:3671349-3671368 | MS.gene024708:CDS | 35.0% | |
| CATATGTGAAGTTTCCTAGT+TGG | - | chr5.4:3671289-3671308 | MS.gene024708:intron | 35.0% | |
| GAGAGCAAATTTAATGTTGG+TGG | - | chr5.4:3669595-3669614 | MS.gene024708:intron | 35.0% | |
| GTGTTATGATTTCGTTTCTC+TGG | - | chr5.4:3671085-3671104 | MS.gene024708:CDS | 35.0% | |
| TATAGTCAATTGGACATGGT+TGG | - | chr5.4:3670844-3670863 | MS.gene024708:intron | 35.0% | |
| TGAATTTAGATGCATGTGAG+TGG | - | chr5.4:3671210-3671229 | MS.gene024708:CDS | 35.0% | |
| TGCTCCAAATGTTCTCAATT+GGG | - | chr5.4:3671341-3671360 | MS.gene024708:CDS | 35.0% | |
| TTGCTCCAAATGTTCTCAAT+TGG | - | chr5.4:3671340-3671359 | MS.gene024708:CDS | 35.0% | |
| TTTGAATTGAAAGACGAGGT+TGG | - | chr5.4:3670677-3670696 | MS.gene024708:intron | 35.0% | |
| ! | ACATGGTTGGTATTGGAAAA+TGG | - | chr5.4:3670857-3670876 | MS.gene024708:intron | 35.0% |
| ! | GTTTCTTCTTATTTAGGGAC+AGG | - | chr5.4:3671402-3671421 | MS.gene024708:CDS | 35.0% |
| ! | TTGCAAGGTTGATTGTAAGT+GGG | - | chr5.4:3671250-3671269 | MS.gene024708:intron | 35.0% |
| ! | TTTGCAAGGTTGATTGTAAG+TGG | - | chr5.4:3671249-3671268 | MS.gene024708:intron | 35.0% |
| AACAAACTCATCCTTGGCAA+AGG | + | chr5.4:3670463-3670482 | None:intergenic | 40.0% | |
| ACACCAAACAAACTCATCCT+TGG | + | chr5.4:3670469-3670488 | None:intergenic | 40.0% | |
| ACCACGACCAAAGACATTTA+TGG | + | chr5.4:3669744-3669763 | None:intergenic | 40.0% | |
| ACCATAAATGTCTTTGGTCG+TGG | - | chr5.4:3669740-3669759 | MS.gene024708:intron | 40.0% | |
| ATGGTACCACTTACTTTCTC+TGG | - | chr5.4:3671498-3671517 | MS.gene024708:CDS | 40.0% | |
| ATTGGAAGTGAAATGACGAG+AGG | - | chr5.4:3670725-3670744 | MS.gene024708:intron | 40.0% | |
| CAAGAGAACAGGAAAAACTG+AGG | + | chr5.4:3670208-3670227 | None:intergenic | 40.0% | |
| CATGTAATGTAAGGCTGCAA+AGG | - | chr5.4:3670622-3670641 | MS.gene024708:CDS | 40.0% | |
| GAAATTCTCACCAAGAGAAC+AGG | + | chr5.4:3670219-3670238 | None:intergenic | 40.0% | |
| GCGATTTGAATTGAAAGACG+AGG | - | chr5.4:3670673-3670692 | MS.gene024708:intron | 40.0% | |
| TAATAACACGACCGTTGCTT+TGG | + | chr5.4:3670414-3670433 | None:intergenic | 40.0% | |
| TAGGAATTGCTGAGAATGCA+AGG | - | chr5.4:3669639-3669658 | MS.gene024708:intron | 40.0% | |
| TCAATGCATCAGTTGAGAGT+TGG | - | chr5.4:3670434-3670453 | MS.gene024708:CDS | 40.0% | |
| TCCAGCAAGTTTGATCACAT+TGG | - | chr5.4:3669341-3669360 | MS.gene024708:CDS | 40.0% | |
| TTGGTCGTGGTATGTTTCTT+TGG | - | chr5.4:3669753-3669772 | MS.gene024708:intron | 40.0% | |
| ! | CAATTGGACATGGTTGGTAT+TGG | - | chr5.4:3670850-3670869 | MS.gene024708:intron | 40.0% |
| ! | CTCAGTTTTTCCTGTTCTCT+TGG | - | chr5.4:3670206-3670225 | MS.gene024708:intron | 40.0% |
| ! | TGCAAGGTTGATTGTAAGTG+GGG | - | chr5.4:3671251-3671270 | MS.gene024708:intron | 40.0% |
| ! | TTGCCAAGGATGAGTTTGTT+TGG | - | chr5.4:3670463-3670482 | MS.gene024708:intron | 40.0% |
| !! | AATGTGATCAAACTTGCTGG+AGG | + | chr5.4:3669342-3669361 | None:intergenic | 40.0% |
| !! | ATGTGATCAAACTTGCTGGA+GGG | + | chr5.4:3669341-3669360 | None:intergenic | 40.0% |
| !! | TGATCACATTGGCTTTCTCA+TGG | - | chr5.4:3669352-3669371 | MS.gene024708:CDS | 40.0% |
| AAACTCTCCTTGTCCCTTGT+GGG | + | chr5.4:3671386-3671405 | None:intergenic | 45.0% | |
| ACAATGTCACTGGTGGTATG+GGG | - | chr5.4:3671436-3671455 | MS.gene024708:CDS | 45.0% | |
| ACCACCAGTGACATTGTCAA+GGG | + | chr5.4:3671433-3671452 | None:intergenic | 45.0% | |
| AGATCCCTTGACAATGTCAC+TGG | - | chr5.4:3671426-3671445 | MS.gene024708:CDS | 45.0% | |
| ATAGCAACACACGGTTGGAT+TGG | - | chr5.4:3670707-3670726 | MS.gene024708:intron | 45.0% | |
| ATTGTAAGTGGGGCATGTAG+AGG | - | chr5.4:3671261-3671280 | MS.gene024708:intron | 45.0% | |
| CAATGGCCAGAGAAAGTAAG+TGG | + | chr5.4:3671507-3671526 | None:intergenic | 45.0% | |
| CCTTACCTTCACCAAAGCAA+CGG | - | chr5.4:3670400-3670419 | MS.gene024708:CDS | 45.0% | |
| GAATGTTTATCCGACGTTGG+TGG | - | chr5.4:3670372-3670391 | MS.gene024708:CDS | 45.0% | |
| GACAATGTCACTGGTGGTAT+GGG | - | chr5.4:3671435-3671454 | MS.gene024708:CDS | 45.0% | |
| GCATTGAGGAAACAAAGTGC+TGG | + | chr5.4:3669378-3669397 | None:intergenic | 45.0% | |
| GCCAATGTGATCAAACTTGC+TGG | + | chr5.4:3669345-3669364 | None:intergenic | 45.0% | |
| GGAGTAACGATAGCAACACA+CGG | - | chr5.4:3670698-3670717 | MS.gene024708:intron | 45.0% | |
| GTAATGTAAGGCTGCAAAGG+CGG | - | chr5.4:3670625-3670644 | MS.gene024708:CDS | 45.0% | |
| GTTTCCTCAATGCTTGTGAG+TGG | - | chr5.4:3669385-3669404 | MS.gene024708:CDS | 45.0% | |
| TAACGATAGCAACACACGGT+TGG | - | chr5.4:3670702-3670721 | MS.gene024708:intron | 45.0% | |
| TACCACCAGTGACATTGTCA+AGG | + | chr5.4:3671434-3671453 | None:intergenic | 45.0% | |
| TATGGCAGCAGATGTTGTCA+AGG | - | chr5.4:3669688-3669707 | MS.gene024708:intron | 45.0% | |
| TGACAATGTCACTGGTGGTA+TGG | - | chr5.4:3671434-3671453 | MS.gene024708:CDS | 45.0% | |
| TTATTTCCCCACAAGGGACA+AGG | - | chr5.4:3671376-3671395 | MS.gene024708:CDS | 45.0% | |
| ! | AGAGTTGGTTACCTTTGCCA+AGG | - | chr5.4:3670449-3670468 | MS.gene024708:CDS | 45.0% |
| ! | AGGCTTCTTATTTCCCCACA+AGG | - | chr5.4:3671369-3671388 | MS.gene024708:CDS | 45.0% |
| ! | CGAAGAGAGCATAGGCTAAT+AGG | - | chr5.4:3669620-3669639 | MS.gene024708:intron | 45.0% |
| ! | GGCTTCTTATTTCCCCACAA+GGG | - | chr5.4:3671370-3671389 | MS.gene024708:CDS | 45.0% |
| !!! | TTTTAATTTTAAATGAATTA+GGG | + | chr5.4:3670276-3670295 | None:intergenic | 5.0% |
| AACTCTCCTTGTCCCTTGTG+GGG | + | chr5.4:3671385-3671404 | None:intergenic | 50.0% | |
| AGCATCTTCTGCCATTGGAG+AGG | - | chr5.4:3669464-3669483 | MS.gene024708:CDS | 50.0% | |
| AGGCAAGTTCATGCTAGAGG+AGG | - | chr5.4:3670745-3670764 | MS.gene024708:intron | 50.0% | |
| CAAGTTCATGCTAGAGGAGG+GGG | - | chr5.4:3670748-3670767 | MS.gene024708:intron | 50.0% | |
| GAAACTCTCCTTGTCCCTTG+TGG | + | chr5.4:3671387-3671406 | None:intergenic | 50.0% | |
| GAACTTCTCCTGGACACACA+GGG | - | chr5.4:3671475-3671494 | MS.gene024708:CDS | 50.0% | |
| GAGAGGCAAGTTCATGCTAG+AGG | - | chr5.4:3670742-3670761 | MS.gene024708:intron | 50.0% | |
| GCAAGTTCATGCTAGAGGAG+GGG | - | chr5.4:3670747-3670766 | MS.gene024708:intron | 50.0% | |
| GCTGAGAATGCAAGGCGAAT+CGG | - | chr5.4:3669647-3669666 | MS.gene024708:intron | 50.0% | |
| GGCAAGTTCATGCTAGAGGA+GGG | - | chr5.4:3670746-3670765 | MS.gene024708:intron | 50.0% | |
| GGGGAATGTTTATCCGACGT+TGG | - | chr5.4:3670369-3670388 | MS.gene024708:CDS | 50.0% | |
| TAAGGAAGAGCCACCAACGT+CGG | + | chr5.4:3670385-3670404 | None:intergenic | 50.0% | |
| TCCCTTGACAATGTCACTGG+TGG | - | chr5.4:3671429-3671448 | MS.gene024708:CDS | 50.0% | |
| TTGGCAACTTGCCTCTCCAA+TGG | + | chr5.4:3669478-3669497 | None:intergenic | 50.0% | |
| ! | ACTGGAGCATCTTCTGCCAT+TGG | - | chr5.4:3669459-3669478 | MS.gene024708:CDS | 50.0% |
| ! | AGAGCCACTCACAAGCATTG+AGG | + | chr5.4:3669392-3669411 | None:intergenic | 50.0% |
| ! | CCGTTGCTTTGGTGAAGGTA+AGG | + | chr5.4:3670403-3670422 | None:intergenic | 50.0% |
| ATGCTGGAGGGAACTTCTCC+TGG | - | chr5.4:3671465-3671484 | MS.gene024708:CDS | 55.0% | |
| ATGGGGAGACCTATGCTGGA+GGG | - | chr5.4:3671453-3671472 | MS.gene024708:CDS | 55.0% | |
| GGAACTTCTCCTGGACACAC+AGG | - | chr5.4:3671474-3671493 | MS.gene024708:CDS | 55.0% | |
| GGAGAAGTTCCCTCCAGCAT+AGG | + | chr5.4:3671465-3671484 | None:intergenic | 55.0% | |
| TATGGGGAGACCTATGCTGG+AGG | - | chr5.4:3671452-3671471 | MS.gene024708:CDS | 55.0% | |
| TGGTATGGGGAGACCTATGC+TGG | - | chr5.4:3671449-3671468 | MS.gene024708:CDS | 55.0% | |
| TTCTCCTGGACACACAGGGA+TGG | - | chr5.4:3671479-3671498 | MS.gene024708:CDS | 55.0% | |
| ! | CACGACCGTTGCTTTGGTGA+AGG | + | chr5.4:3670408-3670427 | None:intergenic | 55.0% |
| ! | TGGTGGCACGAAGAGAGCAT+AGG | - | chr5.4:3669612-3669631 | MS.gene024708:intron | 55.0% |
| GGTACCATCCCTGTGTGTCC+AGG | + | chr5.4:3671486-3671505 | None:intergenic | 60.0% | |
| AGGAGGGGGCTGACATGCAG+TGG | - | chr5.4:3670762-3670781 | MS.gene024708:intron | 65.0% | |
| GGGGGCTGACATGCAGTGGA+AGG | - | chr5.4:3670766-3670785 | MS.gene024708:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 3669303 | 3671527 | 3669303 | ID=MS.gene024708 |
| chr5.4 | mRNA | 3669303 | 3671527 | 3669303 | ID=MS.gene024708.t1;Parent=MS.gene024708 |
| chr5.4 | exon | 3671330 | 3671527 | 3671330 | ID=MS.gene024708.t1.exon1;Parent=MS.gene024708.t1 |
| chr5.4 | CDS | 3671330 | 3671527 | 3671330 | ID=cds.MS.gene024708.t1;Parent=MS.gene024708.t1 |
| chr5.4 | exon | 3671069 | 3671261 | 3671069 | ID=MS.gene024708.t1.exon2;Parent=MS.gene024708.t1 |
| chr5.4 | CDS | 3671069 | 3671261 | 3671069 | ID=cds.MS.gene024708.t1;Parent=MS.gene024708.t1 |
| chr5.4 | exon | 3670603 | 3670688 | 3670603 | ID=MS.gene024708.t1.exon3;Parent=MS.gene024708.t1 |
| chr5.4 | CDS | 3670603 | 3670688 | 3670603 | ID=cds.MS.gene024708.t1;Parent=MS.gene024708.t1 |
| chr5.4 | exon | 3670344 | 3670475 | 3670344 | ID=MS.gene024708.t1.exon4;Parent=MS.gene024708.t1 |
| chr5.4 | CDS | 3670344 | 3670475 | 3670344 | ID=cds.MS.gene024708.t1;Parent=MS.gene024708.t1 |
| chr5.4 | exon | 3670031 | 3670195 | 3670031 | ID=MS.gene024708.t1.exon5;Parent=MS.gene024708.t1 |
| chr5.4 | CDS | 3670031 | 3670195 | 3670031 | ID=cds.MS.gene024708.t1;Parent=MS.gene024708.t1 |
| chr5.4 | exon | 3669303 | 3669611 | 3669303 | ID=MS.gene024708.t1.exon6;Parent=MS.gene024708.t1 |
| chr5.4 | CDS | 3669303 | 3669611 | 3669303 | ID=cds.MS.gene024708.t1;Parent=MS.gene024708.t1 |
| Gene Sequence |
| Protein sequence |
