AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030460.t1 MTR_8g096620 98.006 351 7 0 1 351 1 351 0.0 706
MS.gene030460.t1 MTR_8g096580 48.077 312 148 2 1 311 1 299 3.92e-102 304
MS.gene030460.t1 MTR_5g008850 44.937 316 163 5 1 310 1 311 2.80e-85 262
MS.gene030460.t1 MTR_8g096610 35.751 193 90 7 126 311 54 219 4.27e-27 107
MS.gene030460.t1 MTR_7g080410 33.778 225 139 7 43 260 36 257 9.60e-25 102
MS.gene030460.t1 MTR_7g080410 33.778 225 139 7 43 260 36 257 1.25e-24 102
MS.gene030460.t1 MTR_3g087850 29.134 254 153 9 49 289 30 269 2.99e-19 87.0
MS.gene030460.t1 MTR_7g105590 29.101 189 122 5 47 229 10 192 6.60e-18 81.3
MS.gene030460.t1 MTR_8g442750 31.390 223 137 6 40 250 9 227 1.86e-17 82.0
MS.gene030460.t1 MTR_3g085740 27.232 224 147 7 43 263 73 283 4.80e-17 81.3
MS.gene030460.t1 MTR_4g132850 27.111 225 146 4 41 252 3 222 1.01e-16 79.3
MS.gene030460.t1 MTR_3g087860 28.390 236 149 9 63 289 30 254 1.29e-16 79.3
MS.gene030460.t1 MTR_1g082760 27.778 198 134 4 40 229 34 230 2.10e-16 79.0
MS.gene030460.t1 MTR_2g022600 30.180 222 132 7 45 250 33 247 2.58e-16 79.7
MS.gene030460.t1 MTR_7g113650 26.400 250 171 6 40 277 34 282 6.97e-16 77.4
MS.gene030460.t1 MTR_4g058840 28.358 201 135 6 43 235 9 208 7.89e-15 73.9
MS.gene030460.t1 MTR_4g058820 28.358 201 135 6 43 235 9 208 7.89e-15 73.9
MS.gene030460.t1 MTR_6g023610 28.426 197 129 6 45 234 13 204 9.36e-15 73.9
MS.gene030460.t1 MTR_4g052340 26.267 217 140 6 47 253 16 222 1.24e-14 73.6
MS.gene030460.t1 MTR_7g063390 29.310 232 144 9 44 267 15 234 2.47e-14 72.4
MS.gene030460.t1 MTR_4g058810 27.861 201 136 6 43 235 9 208 3.10e-14 72.4
MS.gene030460.t1 MTR_4g086410 27.500 200 133 4 46 233 5 204 3.21e-14 74.3
MS.gene030460.t1 MTR_1196s0010 31.674 221 136 6 33 248 262 472 4.44e-14 73.6
MS.gene030460.t1 MTR_4g052300 26.606 218 138 5 47 253 10 216 4.67e-14 71.6
MS.gene030460.t1 MTR_6g023590 28.426 197 129 6 45 234 13 204 5.65e-14 71.6
MS.gene030460.t1 MTR_4g052350 26.512 215 142 7 47 253 16 222 6.74e-14 71.2
MS.gene030460.t1 MTR_4g052320 28.500 200 121 5 47 235 10 198 8.14e-14 71.2
MS.gene030460.t1 MTR_1g051165 27.000 200 134 5 48 235 17 216 8.46e-14 71.2
MS.gene030460.t1 MTR_4g086400 26.500 200 135 4 46 233 5 204 1.81e-13 72.0
MS.gene030460.t1 MTR_4g097510 26.804 194 134 6 48 238 5 193 6.97e-13 68.6
MS.gene030460.t1 MTR_7g063360 29.075 227 151 7 44 267 15 234 1.98e-12 67.0
MS.gene030460.t1 MTR_7g076660 32.414 145 86 3 52 184 12 156 2.68e-12 67.0
MS.gene030460.t1 MTR_7g076660 32.414 145 86 3 52 184 11 155 3.11e-12 66.6
MS.gene030460.t1 MTR_7g063270 28.571 224 149 7 47 267 18 233 3.54e-12 66.2
MS.gene030460.t1 MTR_7g071680 27.933 179 121 3 42 216 26 200 7.17e-12 65.9
MS.gene030460.t1 MTR_4g131740 26.425 193 129 6 47 229 42 231 8.11e-12 65.5
MS.gene030460.t1 MTR_3g098750 30.415 217 115 9 50 250 159 355 1.18e-11 65.9
MS.gene030460.t1 MTR_7g076655 31.724 145 87 3 52 184 11 155 1.66e-11 64.7
MS.gene030460.t1 MTR_4g078630 27.411 197 131 5 42 233 16 205 1.71e-11 64.3
MS.gene030460.t1 MTR_7g063260 27.232 224 153 6 47 267 18 234 2.60e-11 63.5
MS.gene030460.t1 MTR_4g064887 25.778 225 151 6 47 267 17 229 2.65e-11 63.5
MS.gene030460.t1 MTR_7g094520 27.604 192 133 4 48 233 14 205 2.74e-11 63.5
MS.gene030460.t1 MTR_3g068070 26.339 224 151 6 47 267 17 229 8.96e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030460.t1 AT5G50600 61.254 351 134 2 1 351 1 349 2.69e-152 432
MS.gene030460.t1 AT5G50700 61.254 351 134 2 1 351 1 349 2.69e-152 432
MS.gene030460.t1 AT5G50770 49.853 339 168 2 1 339 1 337 1.56e-111 328
MS.gene030460.t1 AT3G47350 46.965 313 152 3 1 313 1 299 8.80e-101 300
MS.gene030460.t1 AT5G50690 49.505 303 142 2 1 303 1 292 2.31e-98 293
MS.gene030460.t1 AT5G50590 49.505 303 142 2 1 303 1 292 2.31e-98 293
MS.gene030460.t1 AT3G47360 46.645 313 154 2 1 313 1 300 1.20e-95 287
MS.gene030460.t1 AT4G10020 45.912 318 165 4 1 316 2 314 7.73e-92 280
MS.gene030460.t1 AT3G47350 49.470 283 127 4 1 283 1 267 4.31e-90 273
MS.gene030460.t1 AT5G50690 53.975 239 110 0 1 239 1 239 1.74e-84 256
MS.gene030460.t1 AT5G50590 53.975 239 110 0 1 239 1 239 1.74e-84 256
MS.gene030460.t1 AT3G47350 38.978 313 133 4 1 313 1 255 1.30e-71 224
MS.gene030460.t1 AT3G03330 35.088 228 135 7 17 231 6 233 7.35e-25 103
MS.gene030460.t1 AT5G65205 34.211 190 111 7 49 233 10 190 1.40e-22 96.3
MS.gene030460.t1 AT5G10050 32.308 195 118 6 49 238 9 194 2.55e-22 95.5
MS.gene030460.t1 AT1G24360 29.592 196 131 6 43 234 72 264 1.88e-17 82.4
MS.gene030460.t1 AT1G54870 29.648 199 129 6 40 229 76 272 2.04e-17 82.4
MS.gene030460.t1 AT1G63380 28.934 197 132 5 48 236 25 221 2.08e-17 81.6
MS.gene030460.t1 AT1G54870 29.648 199 129 6 40 229 78 274 2.33e-17 82.4
MS.gene030460.t1 AT3G05260 29.648 199 126 7 39 227 30 224 2.35e-17 81.6
MS.gene030460.t1 AT1G63380 28.934 197 132 5 48 236 18 214 3.19e-17 81.3
MS.gene030460.t1 AT1G63380 28.934 197 132 5 48 236 22 218 4.17e-17 80.9
MS.gene030460.t1 AT1G63380 28.934 197 132 5 48 236 20 216 4.22e-17 80.9
MS.gene030460.t1 AT3G12800 30.594 219 129 6 40 243 5 215 8.07e-17 80.1
MS.gene030460.t1 AT1G62610 28.934 197 132 5 48 236 17 213 3.74e-16 78.2
MS.gene030460.t1 AT1G62610 28.934 197 132 5 48 236 18 214 4.09e-16 77.8
MS.gene030460.t1 AT1G62610 28.934 197 132 5 48 236 16 212 4.18e-16 77.8
MS.gene030460.t1 AT1G62610 28.934 197 132 5 48 236 22 218 4.56e-16 77.8
MS.gene030460.t1 AT2G29350 31.034 232 135 9 44 267 14 228 4.96e-15 74.7
MS.gene030460.t1 AT3G55310 28.000 200 127 6 48 235 20 214 7.63e-15 74.3
MS.gene030460.t1 AT2G17845 27.500 200 133 6 48 236 50 248 2.78e-14 73.2
MS.gene030460.t1 AT4G05530 26.154 195 130 5 41 229 5 191 3.31e-14 72.0
MS.gene030460.t1 AT3G55290 28.061 196 134 5 48 236 20 215 7.45e-14 71.2
MS.gene030460.t1 AT3G55290 28.061 196 134 5 48 236 21 216 7.53e-14 71.2
MS.gene030460.t1 AT5G06060 27.948 229 147 8 44 267 8 223 1.27e-13 70.5
MS.gene030460.t1 AT3G46170 27.041 196 136 5 48 236 29 224 3.38e-13 69.7
MS.gene030460.t1 AT3G06060 31.034 203 114 7 52 238 44 236 1.57e-12 68.2
MS.gene030460.t1 AT3G06060 31.034 203 114 7 52 238 61 253 1.80e-12 68.2
MS.gene030460.t1 AT2G29290 30.493 223 133 9 52 267 14 221 1.89e-12 67.0
MS.gene030460.t1 AT1G67730 26.296 270 169 14 16 261 12 275 2.04e-12 67.8
MS.gene030460.t1 AT4G13180 25.764 229 149 6 45 255 13 238 2.10e-12 67.0
MS.gene030460.t1 AT5G18210 26.180 233 148 7 44 255 7 236 4.94e-12 65.9
MS.gene030460.t1 AT5G18210 26.180 233 148 7 44 255 7 236 5.56e-12 65.9
MS.gene030460.t1 AT2G29370 28.384 229 146 7 44 267 15 230 1.44e-11 64.7
MS.gene030460.t1 AT4G24050 29.302 215 118 8 52 237 39 248 1.54e-11 64.7
MS.gene030460.t1 AT5G19200 29.949 197 121 6 50 235 40 230 1.81e-11 65.1
MS.gene030460.t1 AT4G24050 29.302 215 118 8 52 237 39 248 2.33e-11 64.7
MS.gene030460.t1 AT3G26760 25.980 204 143 5 35 234 26 225 3.69e-11 63.5
MS.gene030460.t1 AT3G03980 26.829 205 137 5 42 233 11 215 4.12e-11 63.2
MS.gene030460.t1 AT1G52340 28.846 208 128 7 47 243 20 218 8.07e-11 62.4

Find 77 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATTATATATACTCCTTC+TGG 0.214734 4.4:-6915674 None:intergenic
TTGCTAGGTGCTTCTCTTGC+TGG 0.240546 4.4:-6916276 None:intergenic
TCCTTTCATCAATTGATTCT+TGG 0.265350 4.4:+6915641 MS.gene030460:CDS
GATGAAACCGTTAACCATTT+TGG 0.281093 4.4:+6915268 MS.gene030460:CDS
GCTGATAGAGCTCGTGATTT+TGG 0.286452 4.4:+6915181 MS.gene030460:CDS
AAACCCCACTCCAACAATTC+TGG 0.298326 4.4:-6916219 None:intergenic
TTTCTAAAGTTGATGATTGT+AGG 0.326151 4.4:+6915236 MS.gene030460:CDS
TTTGGTAGGACACAAACTTT+TGG 0.338368 4.4:+6915554 MS.gene030460:intron
AGGGAAGAATGTAAAGATAA+TGG 0.356930 4.4:-6914944 None:intergenic
CATACATACGTCTACCAAAA+TGG 0.358019 4.4:-6915282 None:intergenic
AAGAATTTGAAGGTCCAATA+TGG 0.365021 4.4:-6914916 None:intergenic
ATTGCCACCAGAAGGCAAAA+TGG 0.369505 4.4:+6915938 MS.gene030460:CDS
TTGTTACATCTCTCATATCT+TGG 0.383129 4.4:-6915968 None:intergenic
TTCTTCCCTGAAAATGTTGC+TGG 0.384509 4.4:+6914958 MS.gene030460:CDS
ATGCATTACAGTGGATCATT+TGG 0.398219 4.4:+6915379 MS.gene030460:intron
GGTTCAGGAACTTATGAATA+AGG 0.407519 4.4:-6914846 None:intergenic
CACATCACTGGTGCTTCCTC+TGG 0.411745 4.4:+6914991 MS.gene030460:CDS
ACTGGTGCTTCCTCTGGTAT+TGG 0.420526 4.4:+6914997 MS.gene030460:CDS
TGGCAATAAGACTTTGCCTT+TGG 0.423226 4.4:-6915922 None:intergenic
AGTTGATGATTGTAGGCGTT+TGG 0.425267 4.4:+6915243 MS.gene030460:CDS
ACATTATATATACTCCTTCT+GGG 0.435152 4.4:-6915673 None:intergenic
ACGTCTACCAAAATGGTTAA+CGG 0.443115 4.4:-6915275 None:intergenic
TCCAATATGGTGGTAAGAAA+AGG 0.443917 4.4:-6914903 None:intergenic
GAAAAGGAGTAAGGAAAAGA+AGG 0.450873 4.4:-6914887 None:intergenic
AGTAAGGAAAAGAAGGTGAA+TGG 0.457421 4.4:-6914880 None:intergenic
ATGGAGGAGCTACTAGGTTC+AGG 0.479762 4.4:-6914861 None:intergenic
TGAGGTGTGGTAAAGCAAAA+CGG 0.485877 4.4:-6915594 None:intergenic
GTGTCCAGAATTGTTGGAGT+GGG 0.486451 4.4:+6916215 MS.gene030460:CDS
TTGCCACCAGAAGGCAAAAT+GGG 0.488945 4.4:+6915939 MS.gene030460:CDS
TATATACTCCTTCTGGGTGC+AGG 0.491452 4.4:-6915667 None:intergenic
GAGCTCTATCAGCAACTTCA+CGG 0.495626 4.4:-6915171 None:intergenic
AAGTCTTTATGAAACATTGA+GGG 0.498519 4.4:+6915836 MS.gene030460:CDS
TGGTGGTAAGAAAAGGAGTA+AGG 0.505040 4.4:-6914896 None:intergenic
CCTCTGCTGTTTCTGAGGTG+TGG 0.510515 4.4:-6915607 None:intergenic
GCACGCATTATAATAACATC+AGG 0.515853 4.4:-6915208 None:intergenic
TAGCTTTAAATTACCATGAG+AGG 0.516356 4.4:-6915467 None:intergenic
GAAACATTGAGGGTTGAAGT+TGG 0.516747 4.4:+6915846 MS.gene030460:CDS
ATGGTACATTGAGGGGAGAT+AGG 0.520717 4.4:+6916142 MS.gene030460:CDS
GAGGTGTGGTAAAGCAAAAC+GGG 0.520958 4.4:-6915593 None:intergenic
TACCATGAGAGGTCTCCAAT+TGG 0.521548 4.4:-6915456 None:intergenic
AGTGTTGTGTCCAGAATTGT+TGG 0.521927 4.4:+6916209 MS.gene030460:CDS
AGGTGAATGGAGGAGCTACT+AGG 0.526268 4.4:-6914867 None:intergenic
AATGGAAAGGAAGAATTTGA+AGG 0.527999 4.4:-6914926 None:intergenic
AATAGTGAATGGTACATTGA+GGG 0.532567 4.4:+6916134 MS.gene030460:CDS
ACCAGAAGGCAAAATGGGCG+TGG 0.534597 4.4:+6915944 MS.gene030460:CDS
TCAGGAGATCGAATTGAAGA+TGG 0.534824 4.4:-6916339 None:intergenic
ACTCATTCAGTCTTGACCTC+AGG 0.535309 4.4:-6916357 None:intergenic
GGTAAAGTTGTTCACATCAC+TGG 0.554581 4.4:+6914979 MS.gene030460:CDS
AATTCAGATTCTATGTAACC+TGG 0.554617 4.4:-6915897 None:intergenic
ATGTAACTGATATCACCAAT+TGG 0.561569 4.4:+6915441 MS.gene030460:CDS
TAAGTCTTTATGAAACATTG+AGG 0.565380 4.4:+6915835 MS.gene030460:CDS
CACCAATTGGAGACCTCTCA+TGG 0.567087 4.4:+6915454 MS.gene030460:CDS
TCCAAGAATCAATTGATGAA+AGG 0.573578 4.4:-6915642 None:intergenic
CAATAGTGAATGGTACATTG+AGG 0.574939 4.4:+6916133 MS.gene030460:CDS
CATTCACTCACTGATCCCAC+TGG 0.576814 4.4:-6916102 None:intergenic
AGTTACATCTTCAAACATCA+TGG 0.578048 4.4:-6915426 None:intergenic
CTTGGATGCCTGCACCCAGA+AGG 0.586038 4.4:+6915659 MS.gene030460:CDS
TATGTCATTCTAAACCATGC+TGG 0.590361 4.4:-6916177 None:intergenic
TGTGCAAAATCAATAGTGAA+TGG 0.591847 4.4:+6916123 MS.gene030460:CDS
TGCTTCCTCTGGTATTGGAG+AGG 0.597134 4.4:+6915002 MS.gene030460:CDS
TGAAGTGAGTGCAACTCCAG+TGG 0.598795 4.4:+6916086 MS.gene030460:CDS
GGTATTTGACTGCACCAGCA+TGG 0.600958 4.4:+6916163 MS.gene030460:CDS
TGTCCAGAATTGTTGGAGTG+GGG 0.604050 4.4:+6916216 MS.gene030460:CDS
AAGGAAAAGAAGGTGAATGG+AGG 0.605287 4.4:-6914877 None:intergenic
AAAGTCTTATTGCCACCAGA+AGG 0.611122 4.4:+6915930 MS.gene030460:CDS
GAAGTGAGTGCAACTCCAGT+GGG 0.616438 4.4:+6916087 MS.gene030460:CDS
ATCTTCAATTCGATCTCCTG+AGG 0.626026 4.4:+6916341 MS.gene030460:CDS
TGTGTCCAGAATTGTTGGAG+TGG 0.626150 4.4:+6916214 MS.gene030460:CDS
AAACAGCAGAGGCAAAATTG+TGG 0.631748 4.4:+6915618 MS.gene030460:CDS
ATAGAATCTGAATTAACCAA+AGG 0.631775 4.4:+6915906 MS.gene030460:CDS
ATAGTGAATGGTACATTGAG+GGG 0.634116 4.4:+6916135 MS.gene030460:CDS
GGTGTAACAATTGTTACACC+AGG 0.641548 4.4:+6915879 MS.gene030460:CDS
AGAATGTAAAGATAATGGAA+AGG 0.645582 4.4:-6914939 None:intergenic
GCTTACGAGTATGCTAAGAG+AGG 0.664397 4.4:+6915109 MS.gene030460:CDS
AATTTGAAGGTCCAATATGG+TGG 0.665878 4.4:-6914913 None:intergenic
GTTGAAGTTGGAGCAGACGT+AGG 0.674435 4.4:+6915858 MS.gene030460:CDS
CCACACCTCAGAAACAGCAG+AGG 0.715008 4.4:+6915607 MS.gene030460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATTAATTAATATTTGTTTA+AGG - chr4.4:6915323-6915342 None:intergenic 10.0%
!!! ATTTTAATTTTTGTAGCATT+TGG + chr4.4:6915087-6915106 MS.gene030460:intron 15.0%
!! TGTTATGATGATATATATGT+AGG + chr4.4:6916062-6916081 MS.gene030460:intron 20.0%
!!! TAATTATTTGCTGTGTATTT+TGG + chr4.4:6915536-6915555 MS.gene030460:intron 20.0%
!!! TTTAATTTACCTAGTAATAC+AGG + chr4.4:6916008-6916027 MS.gene030460:intron 20.0%
! AAGTCTTTATGAAACATTGA+GGG + chr4.4:6915836-6915855 MS.gene030460:CDS 25.0%
! ACATTATATATACTCCTTCT+GGG - chr4.4:6915676-6915695 None:intergenic 25.0%
! ATAGAATCTGAATTAACCAA+AGG + chr4.4:6915906-6915925 MS.gene030460:CDS 25.0%
! TAAGTCTTTATGAAACATTG+AGG + chr4.4:6915835-6915854 MS.gene030460:CDS 25.0%
! TACATTATATATACTCCTTC+TGG - chr4.4:6915677-6915696 None:intergenic 25.0%
!!! AGAATGTAAAGATAATGGAA+AGG - chr4.4:6914942-6914961 None:intergenic 25.0%
!!! TTTCTAAAGTTGATGATTGT+AGG + chr4.4:6915236-6915255 MS.gene030460:CDS 25.0%
AAGAATTTGAAGGTCCAATA+TGG - chr4.4:6914919-6914938 None:intergenic 30.0%
AATAGTGAATGGTACATTGA+GGG + chr4.4:6916134-6916153 MS.gene030460:CDS 30.0%
AATGGAAAGGAAGAATTTGA+AGG - chr4.4:6914929-6914948 None:intergenic 30.0%
AATTCAGATTCTATGTAACC+TGG - chr4.4:6915900-6915919 None:intergenic 30.0%
AGGGAAGAATGTAAAGATAA+TGG - chr4.4:6914947-6914966 None:intergenic 30.0%
AGTTACATCTTCAAACATCA+TGG - chr4.4:6915429-6915448 None:intergenic 30.0%
ATGTAACTGATATCACCAAT+TGG + chr4.4:6915441-6915460 MS.gene030460:CDS 30.0%
ATTCCCAATTCAACTCAATA+AGG - chr4.4:6915512-6915531 None:intergenic 30.0%
TAGTTATAGCCTGTATTACT+AGG - chr4.4:6916020-6916039 None:intergenic 30.0%
TCCAAGAATCAATTGATGAA+AGG - chr4.4:6915645-6915664 None:intergenic 30.0%
TGTGCAAAATCAATAGTGAA+TGG + chr4.4:6916123-6916142 MS.gene030460:CDS 30.0%
TTGTTACATCTCTCATATCT+TGG - chr4.4:6915971-6915990 None:intergenic 30.0%
! AAAAAGATTTTGGATGCTAC+TGG + chr4.4:6916297-6916316 MS.gene030460:CDS 30.0%
! TCCTTTCATCAATTGATTCT+TGG + chr4.4:6915641-6915660 MS.gene030460:CDS 30.0%
!! TAGCTTTAAATTACCATGAG+AGG - chr4.4:6915470-6915489 None:intergenic 30.0%
!! TATTGAGTTGAATTGGGAAT+TGG + chr4.4:6915512-6915531 MS.gene030460:intron 30.0%
!!! TATTTGCTGTGTATTTTGGT+AGG + chr4.4:6915540-6915559 MS.gene030460:intron 30.0%
AATTTGAAGGTCCAATATGG+TGG - chr4.4:6914916-6914935 None:intergenic 35.0%
ACGTCTACCAAAATGGTTAA+CGG - chr4.4:6915278-6915297 None:intergenic 35.0%
AGTAAGGAAAAGAAGGTGAA+TGG - chr4.4:6914883-6914902 None:intergenic 35.0%
ATAGTGAATGGTACATTGAG+GGG + chr4.4:6916135-6916154 MS.gene030460:CDS 35.0%
ATGCATTACAGTGGATCATT+TGG + chr4.4:6915379-6915398 MS.gene030460:intron 35.0%
CAATAGTGAATGGTACATTG+AGG + chr4.4:6916133-6916152 MS.gene030460:CDS 35.0%
CATACATACGTCTACCAAAA+TGG - chr4.4:6915285-6915304 None:intergenic 35.0%
GAAAAGGAGTAAGGAAAAGA+AGG - chr4.4:6914890-6914909 None:intergenic 35.0%
GCACGCATTATAATAACATC+AGG - chr4.4:6915211-6915230 None:intergenic 35.0%
GCTAACTACATGACTTTATC+TGG + chr4.4:6915486-6915505 MS.gene030460:intron 35.0%
GGTTCAGGAACTTATGAATA+AGG - chr4.4:6914849-6914868 None:intergenic 35.0%
TATGTCATTCTAAACCATGC+TGG - chr4.4:6916180-6916199 None:intergenic 35.0%
TCCAATATGGTGGTAAGAAA+AGG - chr4.4:6914906-6914925 None:intergenic 35.0%
TTCTCTGTAATGCATTACAG+TGG + chr4.4:6915370-6915389 MS.gene030460:intron 35.0%
! ACTTTACCAGCAACATTTTC+AGG - chr4.4:6914967-6914986 None:intergenic 35.0%
! AGCACCTAGCAAAAAGATTT+TGG + chr4.4:6916287-6916306 MS.gene030460:CDS 35.0%
! CTTTACCAGCAACATTTTCA+GGG - chr4.4:6914966-6914985 None:intergenic 35.0%
! GATGAAACCGTTAACCATTT+TGG + chr4.4:6915268-6915287 MS.gene030460:CDS 35.0%
! GCATCCAAAATCTTTTTGCT+AGG - chr4.4:6916294-6916313 None:intergenic 35.0%
! TCCTTTTCTTACCACCATAT+TGG + chr4.4:6914902-6914921 MS.gene030460:CDS 35.0%
! TTGGTAGGACACAAACTTTT+GGG + chr4.4:6915555-6915574 MS.gene030460:intron 35.0%
! TTTGGTAGGACACAAACTTT+TGG + chr4.4:6915554-6915573 MS.gene030460:intron 35.0%
!! TGGCCTTATTGAGTTGAATT+GGG + chr4.4:6915506-6915525 MS.gene030460:intron 35.0%
AAACAGCAGAGGCAAAATTG+TGG + chr4.4:6915618-6915637 MS.gene030460:CDS 40.0%
AAGGAAAAGAAGGTGAATGG+AGG - chr4.4:6914880-6914899 None:intergenic 40.0%
AGTGTTGTGTCCAGAATTGT+TGG + chr4.4:6916209-6916228 MS.gene030460:CDS 40.0%
ATCTTCAATTCGATCTCCTG+AGG + chr4.4:6916341-6916360 MS.gene030460:CDS 40.0%
GAAACATTGAGGGTTGAAGT+TGG + chr4.4:6915846-6915865 MS.gene030460:CDS 40.0%
GGTAAAGTTGTTCACATCAC+TGG + chr4.4:6914979-6914998 MS.gene030460:CDS 40.0%
GGTGTAACAATTGTTACACC+AGG + chr4.4:6915879-6915898 MS.gene030460:CDS 40.0%
TCAGGAGATCGAATTGAAGA+TGG - chr4.4:6916342-6916361 None:intergenic 40.0%
TGAGGTGTGGTAAAGCAAAA+CGG - chr4.4:6915597-6915616 None:intergenic 40.0%
TGGCAATAAGACTTTGCCTT+TGG - chr4.4:6915925-6915944 None:intergenic 40.0%
TGGTGGTAAGAAAAGGAGTA+AGG - chr4.4:6914899-6914918 None:intergenic 40.0%
TTCTTCCCTGAAAATGTTGC+TGG + chr4.4:6914958-6914977 MS.gene030460:CDS 40.0%
! TGGTAGGACACAAACTTTTG+GGG + chr4.4:6915556-6915575 MS.gene030460:intron 40.0%
! TTTTACCTCTCCAATACCAG+AGG - chr4.4:6915010-6915029 None:intergenic 40.0%
!! AAAGTCTTATTGCCACCAGA+AGG + chr4.4:6915930-6915949 MS.gene030460:CDS 40.0%
!! AGTTGATGATTGTAGGCGTT+TGG + chr4.4:6915243-6915262 MS.gene030460:CDS 40.0%
!! CTGGCCTTATTGAGTTGAAT+TGG + chr4.4:6915505-6915524 MS.gene030460:intron 40.0%
AAACCCCACTCCAACAATTC+TGG - chr4.4:6916222-6916241 None:intergenic 45.0%
AGTAAACACTACTACCCTGC+AGG + chr4.4:6915794-6915813 MS.gene030460:intron 45.0%
ATGGTACATTGAGGGGAGAT+AGG + chr4.4:6916142-6916161 MS.gene030460:CDS 45.0%
ATTGCCACCAGAAGGCAAAA+TGG + chr4.4:6915938-6915957 MS.gene030460:CDS 45.0%
GAGCTCTATCAGCAACTTCA+CGG - chr4.4:6915174-6915193 None:intergenic 45.0%
GAGGTGTGGTAAAGCAAAAC+GGG - chr4.4:6915596-6915615 None:intergenic 45.0%
GCTTACGAGTATGCTAAGAG+AGG + chr4.4:6915109-6915128 MS.gene030460:CDS 45.0%
GTGTCCAGAATTGTTGGAGT+GGG + chr4.4:6916215-6916234 MS.gene030460:CDS 45.0%
TACCATGAGAGGTCTCCAAT+TGG - chr4.4:6915459-6915478 None:intergenic 45.0%
TATATACTCCTTCTGGGTGC+AGG - chr4.4:6915670-6915689 None:intergenic 45.0%
TGTCCAGAATTGTTGGAGTG+GGG + chr4.4:6916216-6916235 MS.gene030460:CDS 45.0%
TGTGTCCAGAATTGTTGGAG+TGG + chr4.4:6916214-6916233 MS.gene030460:CDS 45.0%
TTGCCACCAGAAGGCAAAAT+GGG + chr4.4:6915939-6915958 MS.gene030460:CDS 45.0%
! GCTGATAGAGCTCGTGATTT+TGG + chr4.4:6915181-6915200 MS.gene030460:CDS 45.0%
!!! TTTTGCCTCTGCTGTTTCTG+AGG - chr4.4:6915615-6915634 None:intergenic 45.0%
ACTGGTGCTTCCTCTGGTAT+TGG + chr4.4:6914997-6915016 MS.gene030460:CDS 50.0%
AGGTGAATGGAGGAGCTACT+AGG - chr4.4:6914870-6914889 None:intergenic 50.0%
ATGGAGGAGCTACTAGGTTC+AGG - chr4.4:6914864-6914883 None:intergenic 50.0%
CACCAATTGGAGACCTCTCA+TGG + chr4.4:6915454-6915473 MS.gene030460:CDS 50.0%
CATTCACTCACTGATCCCAC+TGG - chr4.4:6916105-6916124 None:intergenic 50.0%
GAAGTGAGTGCAACTCCAGT+GGG + chr4.4:6916087-6916106 MS.gene030460:CDS 50.0%
GGTATTTGACTGCACCAGCA+TGG + chr4.4:6916163-6916182 MS.gene030460:CDS 50.0%
GTTGAAGTTGGAGCAGACGT+AGG + chr4.4:6915858-6915877 MS.gene030460:CDS 50.0%
TGAAGTGAGTGCAACTCCAG+TGG + chr4.4:6916086-6916105 MS.gene030460:CDS 50.0%
TTGCTAGGTGCTTCTCTTGC+TGG - chr4.4:6916279-6916298 None:intergenic 50.0%
! TGCTTCCTCTGGTATTGGAG+AGG + chr4.4:6915002-6915021 MS.gene030460:CDS 50.0%
ACCAGAAGGCAAAATGGGCG+TGG + chr4.4:6915944-6915963 MS.gene030460:CDS 55.0%
CACATCACTGGTGCTTCCTC+TGG + chr4.4:6914991-6915010 MS.gene030460:CDS 55.0%
CCACACCTCAGAAACAGCAG+AGG + chr4.4:6915607-6915626 MS.gene030460:CDS 55.0%
! ACGCCCATTTTGCCTTCTGG+TGG - chr4.4:6915945-6915964 None:intergenic 55.0%
! TCCACGCCCATTTTGCCTTC+TGG - chr4.4:6915948-6915967 None:intergenic 55.0%
!! ATGCTGCTTTGCTTGCCTGC+AGG - chr4.4:6915812-6915831 None:intergenic 55.0%
!! CCTCTGCTGTTTCTGAGGTG+TGG - chr4.4:6915610-6915629 None:intergenic 55.0%
!! TGCTGCTTTGCTTGCCTGCA+GGG - chr4.4:6915811-6915830 None:intergenic 55.0%
CTTGGATGCCTGCACCCAGA+AGG + chr4.4:6915659-6915678 MS.gene030460:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 6914841 6916377 6914841 ID=MS.gene030460
chr4.4 mRNA 6914841 6916377 6914841 ID=MS.gene030460.t1;Parent=MS.gene030460
chr4.4 exon 6914841 6915023 6914841 ID=MS.gene030460.t1.exon1;Parent=MS.gene030460.t1
chr4.4 CDS 6914841 6915023 6914841 ID=cds.MS.gene030460.t1;Parent=MS.gene030460.t1
chr4.4 exon 6915103 6915295 6915103 ID=MS.gene030460.t1.exon2;Parent=MS.gene030460.t1
chr4.4 CDS 6915103 6915295 6915103 ID=cds.MS.gene030460.t1;Parent=MS.gene030460.t1
chr4.4 exon 6915390 6915475 6915390 ID=MS.gene030460.t1.exon3;Parent=MS.gene030460.t1
chr4.4 CDS 6915390 6915475 6915390 ID=cds.MS.gene030460.t1;Parent=MS.gene030460.t1
chr4.4 exon 6915562 6915693 6915562 ID=MS.gene030460.t1.exon4;Parent=MS.gene030460.t1
chr4.4 CDS 6915562 6915693 6915562 ID=cds.MS.gene030460.t1;Parent=MS.gene030460.t1
chr4.4 exon 6915816 6915983 6915816 ID=MS.gene030460.t1.exon5;Parent=MS.gene030460.t1
chr4.4 CDS 6915816 6915983 6915816 ID=cds.MS.gene030460.t1;Parent=MS.gene030460.t1
chr4.4 exon 6916084 6916377 6916084 ID=MS.gene030460.t1.exon6;Parent=MS.gene030460.t1
chr4.4 CDS 6916084 6916377 6916084 ID=cds.MS.gene030460.t1;Parent=MS.gene030460.t1
Gene Sequence

>MS.gene030460

ATGGACCTTATTCATAAGTTCCTGAACCTAGTAGCTCCTCCATTCACCTTCTTTTCCTTACTCCTTTTCTTACCACCATATTGGACCTTCAAATTCTTCCTTTCCATTATCTTTACATTCTTCCCTGAAAATGTTGCTGGTAAAGTTGTTCACATCACTGGTGCTTCCTCTGGTATTGGAGAGGTAAAACATATAGTATTCTCAATTAATTCATATATACACTAACTAACATTATTATATTTAATGATTTTAATTTTTGTAGCATTTGGCTTACGAGTATGCTAAGAGAGGTGCACGCTTAGCACTTTCTGCTAGAAGAGATACAGCACTCCGTGAAGTTGCTGATAGAGCTCGTGATTTTGGTTCTCCTGATGTTATTATAATGCGTGCAGATGTTTCTAAAGTTGATGATTGTAGGCGTTTGGTCGATGAAACCGTTAACCATTTTGGTAGACGTATGTATGTGACAGTCAAAGTTTCCTTAAACAAATATTAATTAATCACATAAATACATATCTTATACTGTTAATTCTCTGTAATGCATTACAGTGGATCATTTGGTAAACAATGCTGCAATCAGTGCTGCCATGATGTTTGAAGATGTAACTGATATCACCAATTGGAGACCTCTCATGGTAATTTAAAGCTAACTACATGACTTTATCTGGCCTTATTGAGTTGAATTGGGAATTGGCTAATTATTTGCTGTGTATTTTGGTAGGACACAAACTTTTGGGGATCAGTTTACACAACCCGTTTTGCTTTACCACACCTCAGAAACAGCAGAGGCAAAATTGTGGTCCTTTCATCAATTGATTCTTGGATGCCTGCACCCAGAAGGAGTATATATAATGTACTAAGTGACTGATATATTACTATTATAATCTATCTCTATTTTCAATTAATATTGTTCAATATATTATATTCTTCATATTATTTCATTTAATTATTAAAGTAAACACTACTACCCTGCAGGCAAGCAAAGCAGCATTAGTAAGTCTTTATGAAACATTGAGGGTTGAAGTTGGAGCAGACGTAGGTGTAACAATTGTTACACCAGGTTACATAGAATCTGAATTAACCAAAGGCAAAGTCTTATTGCCACCAGAAGGCAAAATGGGCGTGGACCAAGATATGAGAGATGTAACAAAATTTTCAATCTCATCTTTTAATTTACCTAGTAATACAGGCTATAACTATTCATATAATTTACATAATTAATGTTATGATGATATATATGTAGGTTGAAGTGAGTGCAACTCCAGTGGGATCAGTGAGTGAATGTGCAAAATCAATAGTGAATGGTACATTGAGGGGAGATAGGTATTTGACTGCACCAGCATGGTTTAGAATGACATATGTTGTGAAAGTGTTGTGTCCAGAATTGTTGGAGTGGGGTTTCAGAATGTTGTACTTGACTAGATCAAGTAATACTCCAGCAAGAGAAGCACCTAGCAAAAAGATTTTGGATGCTACTGGAATCAAAAACGTGTTCTATCCATCTTCAATTCGATCTCCTGAGGTCAAGACTGAATGA
Protein sequence

>MS.gene030460.t1

MDLIHKFLNLVAPPFTFFSLLLFLPPYWTFKFFLSIIFTFFPENVAGKVVHITGASSGIGEHLAYEYAKRGARLALSARRDTALREVADRARDFGSPDVIIMRADVSKVDDCRRLVDETVNHFGRLDHLVNNAAISAAMMFEDVTDITNWRPLMDTNFWGSVYTTRFALPHLRNSRGKIVVLSSIDSWMPAPRRSIYNASKAALVSLYETLRVEVGADVGVTIVTPGYIESELTKGKVLLPPEGKMGVDQDMRDVEVSATPVGSVSECAKSIVNGTLRGDRYLTAPAWFRMTYVVKVLCPELLEWGFRMLYLTRSSNTPAREAPSKKILDATGIKNVFYPSSIRSPEVKTE