AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene024760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024760.t1 MTR_5g007880 97.436 312 8 0 1 312 1 312 0.0 630
MS.gene024760.t1 MTR_5g007880 97.500 280 7 0 1 280 1 280 0.0 565
MS.gene024760.t1 MTR_5g014220 74.359 39 10 0 115 153 43 81 5.47e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024760.t1 AT2G43190 55.128 234 100 2 75 308 62 290 3.41e-86 261
MS.gene024760.t1 AT2G43190 55.128 234 100 2 75 308 62 290 3.41e-86 261
MS.gene024760.t1 AT2G43190 58.333 216 89 1 93 308 75 289 1.42e-85 259
MS.gene024760.t1 AT2G43190 58.333 216 89 1 93 308 75 289 1.42e-85 259
MS.gene024760.t1 AT2G43190 44.444 234 90 2 75 308 62 255 1.01e-58 189

Find 54 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGAAACTGCAGAAGCTTT+TGG 0.202603 5.3:-2531625 MS.gene024760:CDS
TGCCACCAGTTCCAGTAAAA+TGG 0.225932 5.3:+2531656 None:intergenic
GAAAATCTGCTCACAACTAA+TGG 0.271857 5.3:-2533439 MS.gene024760:CDS
TAAATTTGAATTACCTTTGT+TGG 0.343920 5.3:+2534348 None:intergenic
ACTTACTTATGGAACTCTTT+AGG 0.344380 5.3:+2533024 None:intergenic
AAGAAGTTCATGCAATATTT+CGG 0.347349 5.3:+2533245 None:intergenic
AAAATCTGCTCACAACTAAT+GGG 0.354040 5.3:-2533438 MS.gene024760:CDS
TTGTACTACAAGTTGATTGC+TGG 0.357928 5.3:-2530581 MS.gene024760:CDS
ACAGAAAGTTGGGCATATTC+TGG 0.385740 5.3:+2533472 None:intergenic
GAAACGTGCAATGGAGGCTT+TGG 0.387822 5.3:-2534557 MS.gene024760:CDS
TCGGATGATGGACGACATAA+AGG 0.400815 5.3:+2534376 None:intergenic
AAATTTGAATTACCTTTGTT+GGG 0.407924 5.3:+2534349 None:intergenic
CATTTACAGTCACAGAAAGT+TGG 0.409130 5.3:+2533461 None:intergenic
AAACTAGATTCAAGAAAGGT+TGG 0.424013 5.3:-2530537 MS.gene024760:CDS
ATTTACAGTCACAGAAAGTT+GGG 0.425288 5.3:+2533462 None:intergenic
CAGTACAGTACCTTGTGAAA+TGG 0.436121 5.3:+2533639 None:intergenic
TGCTGGAAAGCCACTCTGCT+TGG 0.452437 5.3:-2530564 MS.gene024760:CDS
TTGTTCCAGGAATAATCAAT+TGG 0.458394 5.3:-2532572 MS.gene024760:intron
AAGTTGTTGCTTAAATCCAC+TGG 0.460350 5.3:-2532706 MS.gene024760:CDS
GCCACCAGTTCCAGTAAAAT+GGG 0.464672 5.3:+2531657 None:intergenic
AATTGCAGTTGTTCCGAAGA+AGG 0.466042 5.3:-2530613 MS.gene024760:intron
TATCAATGGCTGCTGAATCA+AGG 0.478212 5.3:-2534579 None:intergenic
TCATTAGAAGTAGAGGGTGG+TGG 0.478401 5.3:+2534409 None:intergenic
TTCTTCATCTTCTCAAACAA+GGG 0.478707 5.3:-2533124 MS.gene024760:CDS
ACAAATACAGAACCCTTCTT+CGG 0.485262 5.3:+2530600 None:intergenic
CAATTGGCTCAATGTCTCCT+AGG 0.493446 5.3:-2532556 MS.gene024760:CDS
ATTACCTTTGTTGGGTGTAT+CGG 0.513719 5.3:+2534357 None:intergenic
TCTTTCCACATGTCATGCAT+TGG 0.514242 5.3:+2532736 None:intergenic
GGATGGATCATTAGAAGTAG+AGG 0.527661 5.3:+2534402 None:intergenic
TTGTTGGGTGTATCGGATGA+TGG 0.531290 5.3:+2534364 None:intergenic
ATTGCATGAACTTCTTCAGA+AGG 0.532906 5.3:-2533238 MS.gene024760:CDS
ATTGCAGTTGTTCCGAAGAA+GGG 0.549801 5.3:-2530612 MS.gene024760:intron
CTTGCACAAAATTATCAAGA+AGG 0.550602 5.3:+2533157 None:intergenic
AGATAAACTAGATTCAAGAA+AGG 0.561327 5.3:-2530541 MS.gene024760:CDS
TTTCTTCATCTTCTCAAACA+AGG 0.563095 5.3:-2533125 MS.gene024760:CDS
GGACGACATAAAGGCAAGGA+TGG 0.564438 5.3:+2534385 None:intergenic
TTTGGTCGTGCCATTTCACA+AGG 0.566627 5.3:-2533649 MS.gene024760:intron
CTCCTAGGTGCAGATCTACA+TGG 0.569680 5.3:-2532541 MS.gene024760:CDS
ATCAAGGAAACGTGCAATGG+AGG 0.577785 5.3:-2534563 MS.gene024760:CDS
TAATCTGTAGAGAAAGAAGA+TGG 0.577837 5.3:-2533496 MS.gene024760:intron
GATGGATCATTAGAAGTAGA+GGG 0.588050 5.3:+2534403 None:intergenic
TTGCATGAACTTCTTCAGAA+GGG 0.595042 5.3:-2533237 MS.gene024760:CDS
AGTTGTTGCTTAAATCCACT+GGG 0.610453 5.3:-2532705 MS.gene024760:intron
TCAAGCCAATGCATGACATG+TGG 0.623887 5.3:-2532741 MS.gene024760:CDS
ACTGAAGATAATAAATTCCG+AGG 0.626423 5.3:-2531595 MS.gene024760:intron
GCAGCACAAAAGTACATGCA+AGG 0.640542 5.3:-2533210 MS.gene024760:CDS
TCTGCTCACAACTAATGGGG+AGG 0.647144 5.3:-2533434 MS.gene024760:intron
TGAATCAAGGAAACGTGCAA+TGG 0.657298 5.3:-2534566 MS.gene024760:CDS
TGATGGACGACATAAAGGCA+AGG 0.669447 5.3:+2534381 None:intergenic
AAATCTGCTCACAACTAATG+GGG 0.672764 5.3:-2533437 MS.gene024760:CDS
TAGTTTATCTCCAAGCAGAG+TGG 0.678445 5.3:+2530554 None:intergenic
GGATCATTAGAAGTAGAGGG+TGG 0.685020 5.3:+2534406 None:intergenic
TCATCCGATACACCCAACAA+AGG 0.686196 5.3:-2534361 MS.gene024760:intron
CACCATGTAGATCTGCACCT+AGG 0.706017 5.3:+2532539 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATAATTAATGAATAATA+AGG - chr5.3:2533673-2533692 MS.gene024760:intron 10.0%
!!! TTTTTTATTTCATTTTCTTA+GGG - chr5.3:2531420-2531439 MS.gene024760:intron 10.0%
!! AAAAAGTTAATACATTTATG+TGG - chr5.3:2531074-2531093 MS.gene024760:intron 15.0%
!! AAAAGAAAAGAAAAACAAAA+GGG - chr5.3:2530598-2530617 MS.gene024760:CDS 15.0%
!! TAAAAGAAAAGAAAAACAAA+AGG - chr5.3:2530597-2530616 MS.gene024760:CDS 15.0%
!!! AATTAACAAATCAAAGTATT+TGG + chr5.3:2534475-2534494 None:intergenic 15.0%
!!! ATTGAATCACTTTTTATTTA+GGG - chr5.3:2534181-2534200 MS.gene024760:intron 15.0%
!!! ATTTCATTTTCTTAGTAAAA+GGG + chr5.3:2534265-2534284 None:intergenic 15.0%
!!! CTATTTTTGTTTTTTGTTTT+TGG - chr5.3:2532613-2532632 MS.gene024760:intron 15.0%
!!! CTTTTTTATTTCATTTTCTT+AGG - chr5.3:2531419-2531438 MS.gene024760:intron 15.0%
!!! TAATGATTTTCTTTTCTTTT+AGG + chr5.3:2530643-2530662 None:intergenic 15.0%
!!! TATTTCATTTTCTTAGTAAA+AGG + chr5.3:2534266-2534285 None:intergenic 15.0%
!!! TTTGCTTATGATTATTTTTA+AGG - chr5.3:2531114-2531133 MS.gene024760:intron 15.0%
!! AAAAAAAAAATCCAAGTGTA+AGG + chr5.3:2533048-2533067 None:intergenic 20.0%
!! AAATTTGAATTACCTTTGTT+GGG + chr5.3:2530758-2530777 None:intergenic 20.0%
!! AAGAATTAAGAAAGAGAAAA+TGG + chr5.3:2534241-2534260 None:intergenic 20.0%
!! AGAATTAAGAAAGAGAAAAT+GGG + chr5.3:2534240-2534259 None:intergenic 20.0%
!! AGTCATTCTTATAAACAATA+TGG - chr5.3:2533960-2533979 MS.gene024760:intron 20.0%
!! ATGAAACAACATAAAAAACA+TGG - chr5.3:2532044-2532063 MS.gene024760:intron 20.0%
!! ATTTGTAACTTCAATTTATG+TGG - chr5.3:2531564-2531583 MS.gene024760:intron 20.0%
!! TAAATTTGAATTACCTTTGT+TGG + chr5.3:2530759-2530778 None:intergenic 20.0%
!! TTTGTAACTTCAATTTATGT+GGG - chr5.3:2531565-2531584 MS.gene024760:intron 20.0%
!!! ATGTTTTTTATGTTGTTTCA+TGG + chr5.3:2532045-2532064 None:intergenic 20.0%
!!! ATTTGCTACATATAATTGTA+CGG - chr5.3:2534071-2534090 MS.gene024760:intron 20.0%
!!! GATTGAATCACTTTTTATTT+AGG - chr5.3:2534180-2534199 MS.gene024760:intron 20.0%
!!! TTCTATTTTTAAGTAGTGAA+AGG + chr5.3:2533539-2533558 None:intergenic 20.0%
!!! TTTCATTTTCTTAGTAAAAG+GGG + chr5.3:2534264-2534283 None:intergenic 20.0%
!!! TTTTGATCTAACTAAAACTT+TGG + chr5.3:2534216-2534235 None:intergenic 20.0%
! AAAACTTCAACTTAAGCAAA+CGG + chr5.3:2534393-2534412 None:intergenic 25.0%
! AAAGCTCAAGATAAATGAAA+TGG + chr5.3:2532674-2532693 None:intergenic 25.0%
! AAGAAGTTCATGCAATATTT+CGG + chr5.3:2531862-2531881 None:intergenic 25.0%
! AAGTCAAATTAGAACAATCA+GGG + chr5.3:2531800-2531819 None:intergenic 25.0%
! AAGTGATTCAATCGTAAATT+AGG + chr5.3:2534173-2534192 None:intergenic 25.0%
! AATATTTCATATGCATCGAA+AGG - chr5.3:2532774-2532793 MS.gene024760:intron 25.0%
! ACAATTATATGTAGCAAATC+TGG + chr5.3:2534070-2534089 None:intergenic 25.0%
! ACATAAAAAACATGGATCAA+TGG - chr5.3:2532052-2532071 MS.gene024760:intron 25.0%
! ACTATGCTAAAGTTTCAAAA+CGG + chr5.3:2533710-2533729 None:intergenic 25.0%
! ACTTATTCAATATGACACTT+AGG - chr5.3:2530808-2530827 MS.gene024760:intron 25.0%
! AGACGAGTAAAAAAATCAAT+AGG + chr5.3:2534138-2534157 None:intergenic 25.0%
! AGATAAACTAGATTCAAGAA+AGG - chr5.3:2534563-2534582 MS.gene024760:CDS 25.0%
! ATGTGACACTTACAATATTA+TGG - chr5.3:2534320-2534339 MS.gene024760:intron 25.0%
! CAAAAAACAAAAATAGAGTG+TGG + chr5.3:2532609-2532628 None:intergenic 25.0%
! CATTAATACTTGAGAAATAC+AGG + chr5.3:2533591-2533610 None:intergenic 25.0%
! GCTTATATGTTTGAATGTAA+AGG - chr5.3:2533837-2533856 MS.gene024760:intron 25.0%
! TAAGTCAAATTAGAACAATC+AGG + chr5.3:2531801-2531820 None:intergenic 25.0%
! TTACAATATTATGGCTGAAT+TGG - chr5.3:2534329-2534348 MS.gene024760:intron 25.0%
!! AACTTATGTTGAATGCTTTT+AGG - chr5.3:2533084-2533103 MS.gene024760:CDS 25.0%
!! ATAAACCCAAATGCATTTTT+CGG - chr5.3:2531318-2531337 MS.gene024760:intron 25.0%
!! TTCATTTATCTTGAGCTTTT+TGG - chr5.3:2532675-2532694 MS.gene024760:intron 25.0%
!! TTCATTTTCTTAGGGAATTT+CGG - chr5.3:2531428-2531447 MS.gene024760:intron 25.0%
!! TTTTAATGACTTATCAGTTC+TGG - chr5.3:2534409-2534428 MS.gene024760:CDS 25.0%
!! TTTTCATTTCGTCTTTCATT+GGG - chr5.3:2532200-2532219 MS.gene024760:intron 25.0%
!! TTTTTCATTTCGTCTTTCAT+TGG - chr5.3:2532199-2532218 MS.gene024760:intron 25.0%
!!! CTTATGATTATTTTTAAGGC+TGG - chr5.3:2531118-2531137 MS.gene024760:intron 25.0%
!!! GATTGAACATATTGACTTTT+TGG + chr5.3:2531729-2531748 None:intergenic 25.0%
!!! TTCTTCATTTTGATTTCTGA+AGG - chr5.3:2531524-2531543 MS.gene024760:intron 25.0%
AAAATCTGCTCACAACTAAT+GGG - chr5.3:2531666-2531685 MS.gene024760:CDS 30.0%
AAACTAGATTCAAGAAAGGT+TGG - chr5.3:2534567-2534586 MS.gene024760:CDS 30.0%
AAATTTGTCTGCATAACATG+TGG + chr5.3:2533339-2533358 None:intergenic 30.0%
ACTGAAGATAATAAATTCCG+AGG - chr5.3:2533509-2533528 MS.gene024760:intron 30.0%
ACTTACTTATGGAACTCTTT+AGG + chr5.3:2532083-2532102 None:intergenic 30.0%
ATATGGCTGAGATTCTTATT+TGG - chr5.3:2533977-2533996 MS.gene024760:intron 30.0%
ATTCAAATGAGAAACATTCC+CGG + chr5.3:2532980-2532999 None:intergenic 30.0%
ATTTACAGTCACAGAAAGTT+GGG + chr5.3:2531645-2531664 None:intergenic 30.0%
CATTATTAGATTGTCCTATC+AGG - chr5.3:2534015-2534034 MS.gene024760:intron 30.0%
CTGATAGGACAATCTAATAA+TGG + chr5.3:2534017-2534036 None:intergenic 30.0%
CTTGCACAAAATTATCAAGA+AGG + chr5.3:2531950-2531969 None:intergenic 30.0%
TAAATACTTGCATGACTGTT+TGG + chr5.3:2531289-2531308 None:intergenic 30.0%
TAACTAGCAGACAACTATTT+AGG + chr5.3:2533298-2533317 None:intergenic 30.0%
TAATCTGTAGAGAAAGAAGA+TGG - chr5.3:2531608-2531627 MS.gene024760:CDS 30.0%
TACTTGAGATATAACCTGAT+AGG + chr5.3:2534032-2534051 None:intergenic 30.0%
TGGATGTTAATTATTTCCCA+CGG - chr5.3:2532730-2532749 MS.gene024760:CDS 30.0%
TTATATGTAGCAAATCTGGT+TGG + chr5.3:2534066-2534085 None:intergenic 30.0%
TTATTCCTGGAACAATAAAC+AGG + chr5.3:2532527-2532546 None:intergenic 30.0%
TTCTTCATCTTCTCAAACAA+GGG - chr5.3:2531980-2531999 MS.gene024760:intron 30.0%
TTGTTCCAGGAATAATCAAT+TGG - chr5.3:2532532-2532551 MS.gene024760:CDS 30.0%
TTTCATTTCGTCTTTCATTG+GGG - chr5.3:2532201-2532220 MS.gene024760:intron 30.0%
TTTCTTCATCTTCTCAAACA+AGG - chr5.3:2531979-2531998 MS.gene024760:intron 30.0%
! ATGAACAGTGATTACTGATT+AGG + chr5.3:2532321-2532340 None:intergenic 30.0%
! GAGAAGATGTATTTTATGAC+AGG - chr5.3:2533883-2533902 MS.gene024760:intron 30.0%
! GAGCTTTTTGGATAATTACA+AGG - chr5.3:2532687-2532706 MS.gene024760:intron 30.0%
! TAAACCCAAATGCATTTTTC+GGG - chr5.3:2531319-2531338 MS.gene024760:intron 30.0%
! TACACTTTATGGAAGTATGT+TGG - chr5.3:2532118-2532137 MS.gene024760:intron 30.0%
! TACTTATATTTAAGGCCTGA+TGG + chr5.3:2531049-2531068 None:intergenic 30.0%
! TGTAAACTAACCCATTTTAC+TGG - chr5.3:2533437-2533456 MS.gene024760:CDS 30.0%
! TTTCTAAGAACACCAAAAGT+AGG + chr5.3:2532842-2532861 None:intergenic 30.0%
!! AAGGACAGTTATTTTGTCAT+TGG - chr5.3:2532706-2532725 MS.gene024760:CDS 30.0%
!! ACAGTTATTTTGTCATTGGT+TGG - chr5.3:2532710-2532729 MS.gene024760:CDS 30.0%
!! CTTCTTGATAATTTTGTGCA+AGG - chr5.3:2531948-2531967 MS.gene024760:intron 30.0%
!! GAAGTATTTTACGCAATCAT+TGG - chr5.3:2532873-2532892 MS.gene024760:intron 30.0%
!!! ATGATTATTTTTAAGGCTGG+AGG - chr5.3:2531121-2531140 MS.gene024760:intron 30.0%
!!! CTACATGGTGCTATTATTTT+AGG - chr5.3:2532578-2532597 MS.gene024760:intron 30.0%
!!! GTGTTCAGTTGCTTTTAAAA+TGG - chr5.3:2533790-2533809 MS.gene024760:intron 30.0%
!!! TGATTATTTTTAAGGCTGGA+GGG - chr5.3:2531122-2531141 MS.gene024760:intron 30.0%
!!! TTTTAGAGTTCAGACTTCAA+AGG + chr5.3:2531753-2531772 None:intergenic 30.0%
AAATACAGGAATAACAGCTC+TGG + chr5.3:2533577-2533596 None:intergenic 35.0%
AAATCTGCTCACAACTAATG+GGG - chr5.3:2531667-2531686 MS.gene024760:CDS 35.0%
AAGTAGTGAAAGGATTACCT+CGG + chr5.3:2533529-2533548 None:intergenic 35.0%
ACAAACCTGTTTATTGTTCC+AGG - chr5.3:2532519-2532538 MS.gene024760:intron 35.0%
ACAAATACAGAACCCTTCTT+CGG + chr5.3:2534507-2534526 None:intergenic 35.0%
AGAGACCTTGAACTTACTTA+TGG + chr5.3:2532094-2532113 None:intergenic 35.0%
ATTACCTTTGTTGGGTGTAT+CGG + chr5.3:2530750-2530769 None:intergenic 35.0%
ATTCACAGGTTTCATTACAG+CGG + chr5.3:2532818-2532837 None:intergenic 35.0%
ATTGCATGAACTTCTTCAGA+AGG - chr5.3:2531866-2531885 MS.gene024760:intron 35.0%
CAAAAATAAGCCAATCCAAG+CGG - chr5.3:2531009-2531028 MS.gene024760:intron 35.0%
CAAATTTGTACAGCAAACAC+TGG + chr5.3:2533656-2533675 None:intergenic 35.0%
CATTTACAGTCACAGAAAGT+TGG + chr5.3:2531646-2531665 None:intergenic 35.0%
GAAAATCTGCTCACAACTAA+TGG - chr5.3:2531665-2531684 MS.gene024760:CDS 35.0%
GAGTTCCATAAGTAAGTTCA+AGG - chr5.3:2532086-2532105 MS.gene024760:intron 35.0%
GATGGATCATTAGAAGTAGA+GGG + chr5.3:2530704-2530723 None:intergenic 35.0%
GATTTAATAACAGTACCCAG+TGG + chr5.3:2532417-2532436 None:intergenic 35.0%
GGAATTCTTAGATTCATGCT+AGG - chr5.3:2532222-2532241 MS.gene024760:intron 35.0%
GGTCTCTAAACTACACTTTA+TGG - chr5.3:2532107-2532126 MS.gene024760:intron 35.0%
TAGTAAGATGAGCTTCTGAT+TGG - chr5.3:2532928-2532947 MS.gene024760:intron 35.0%
TGTGCAATTCATCAATAGCA+AGG + chr5.3:2532439-2532458 None:intergenic 35.0%
TTGAGCCAATTGATTATTCC+TGG + chr5.3:2532540-2532559 None:intergenic 35.0%
TTGCATGAACTTCTTCAGAA+GGG - chr5.3:2531867-2531886 MS.gene024760:intron 35.0%
! AAGTTGTTGCTTAAATCCAC+TGG - chr5.3:2532398-2532417 MS.gene024760:intron 35.0%
! AGTGTAAGGAGCATGAAAAA+AGG + chr5.3:2533034-2533053 None:intergenic 35.0%
! AGTTGTTGCTTAAATCCACT+GGG - chr5.3:2532399-2532418 MS.gene024760:intron 35.0%
! GATGTATTTTATGACAGGCA+TGG - chr5.3:2533888-2533907 MS.gene024760:intron 35.0%
! GGTTTAGCATTTTCTGTTGT+AGG + chr5.3:2532653-2532672 None:intergenic 35.0%
! GTGTAAGGAGCATGAAAAAA+GGG + chr5.3:2533033-2533052 None:intergenic 35.0%
! TCAGCACTTTTATTCTCTCA+CGG - chr5.3:2532479-2532498 MS.gene024760:intron 35.0%
! TTAGGGAATTTCGGTCTTTT+TGG - chr5.3:2531437-2531456 MS.gene024760:intron 35.0%
! TTGACTCGAAAGTCGTTAAT+AGG - chr5.3:2534292-2534311 MS.gene024760:intron 35.0%
! TTGGTGTTCTTAGAAAGAGT+TGG - chr5.3:2532846-2532865 MS.gene024760:intron 35.0%
! TTTTTCATGCTCCTTACACT+TGG - chr5.3:2533034-2533053 MS.gene024760:CDS 35.0%
!! AGCTGTTTCTACATTTCAAG+AGG - chr5.3:2531175-2531194 MS.gene024760:intron 35.0%
!! GCTGTTTCTACATTTCAAGA+GGG - chr5.3:2531176-2531195 MS.gene024760:intron 35.0%
!!! CACTTAGGATCTGTTTTGAT+TGG - chr5.3:2530823-2530842 MS.gene024760:intron 35.0%
AATTGCAGTTGTTCCGAAGA+AGG - chr5.3:2534491-2534510 MS.gene024760:CDS 40.0%
ACACAGAATTGTGATGCTCA+AGG + chr5.3:2534369-2534388 None:intergenic 40.0%
ACAGAAAGTTGGGCATATTC+TGG + chr5.3:2531635-2531654 None:intergenic 40.0%
ATAAAGACATGAGCATCCGT+GGG + chr5.3:2532749-2532768 None:intergenic 40.0%
ATACACTACCACAAACTGCA+GGG + chr5.3:2532165-2532184 None:intergenic 40.0%
ATCCACATGTTATGCAGTTG+TGG - chr5.3:2533412-2533431 MS.gene024760:intron 40.0%
ATTGCAGTTGTTCCGAAGAA+GGG - chr5.3:2534492-2534511 MS.gene024760:CDS 40.0%
CAATGCATGTTGAGTCATCT+AGG + chr5.3:2533203-2533222 None:intergenic 40.0%
CAGTACAGTACCTTGTGAAA+TGG + chr5.3:2531468-2531487 None:intergenic 40.0%
CTAGCAGACAACTATTTAGG+AGG + chr5.3:2533295-2533314 None:intergenic 40.0%
CTAGCCCGAAAAATGCATTT+GGG + chr5.3:2531326-2531345 None:intergenic 40.0%
GACAACTATTTAGGAGGTAG+AGG + chr5.3:2533289-2533308 None:intergenic 40.0%
GGATGGATCATTAGAAGTAG+AGG + chr5.3:2530705-2530724 None:intergenic 40.0%
TAGTTTATCTCCAAGCAGAG+TGG + chr5.3:2534553-2534572 None:intergenic 40.0%
TATACACTACCACAAACTGC+AGG + chr5.3:2532166-2532185 None:intergenic 40.0%
TCAAGAGGGAATAAGCAATG+TGG - chr5.3:2531190-2531209 MS.gene024760:intron 40.0%
TCTAGCCCGAAAAATGCATT+TGG + chr5.3:2531327-2531346 None:intergenic 40.0%
TCTTTCCACATGTCATGCAT+TGG + chr5.3:2532371-2532390 None:intergenic 40.0%
TGAATCAAGGAAACGTGCAA+TGG - chr5.3:2530538-2530557 MS.gene024760:CDS 40.0%
! AACCTGTGAATGCCTACTTT+TGG - chr5.3:2532827-2532846 MS.gene024760:intron 40.0%
! ATGAGCTTCTGATTGGTTCA+AGG - chr5.3:2532935-2532954 MS.gene024760:intron 40.0%
! CTAACCCATTTTACTGGAAC+TGG - chr5.3:2533443-2533462 MS.gene024760:CDS 40.0%
! CTGCTTGTTACTCAAGAAAG+CGG + chr5.3:2533933-2533952 None:intergenic 40.0%
! GTGAAACTGCAGAAGCTTTT+GGG - chr5.3:2533480-2533499 MS.gene024760:CDS 40.0%
! GTTGAGTCATCTAGGAGTTT+TGG + chr5.3:2533195-2533214 None:intergenic 40.0%
! TTTAAGGCCTGATGGAACAA+TGG + chr5.3:2531041-2531060 None:intergenic 40.0%
!! CAGTTTTCTTCTGAAAGAGG+AGG - chr5.3:2531828-2531847 MS.gene024760:intron 40.0%
!! CTGCAGTTTTCTTCTGAAAG+AGG - chr5.3:2531825-2531844 MS.gene024760:intron 40.0%
AGAGGGAATAAGCAATGTGG+AGG - chr5.3:2531193-2531212 MS.gene024760:intron 45.0%
ATACCTAGGTCTTCTTCTCC+GGG - chr5.3:2532959-2532978 MS.gene024760:intron 45.0%
ATCAAGGAAACGTGCAATGG+AGG - chr5.3:2530541-2530560 MS.gene024760:CDS 45.0%
CACCAAAAGTAGGCATTCAC+AGG + chr5.3:2532832-2532851 None:intergenic 45.0%
CATAAAGACATGAGCATCCG+TGG + chr5.3:2532750-2532769 None:intergenic 45.0%
CATACCTAGGTCTTCTTCTC+CGG - chr5.3:2532958-2532977 MS.gene024760:intron 45.0%
CTCCACAACTGCATAACATG+TGG + chr5.3:2533417-2533436 None:intergenic 45.0%
GACCATACCATTGTTCCATC+AGG - chr5.3:2531031-2531050 MS.gene024760:intron 45.0%
GCCACCAGTTCCAGTAAAAT+GGG + chr5.3:2533450-2533469 None:intergenic 45.0%
GGATCATTAGAAGTAGAGGG+TGG + chr5.3:2530701-2530720 None:intergenic 45.0%
GGGCTGTAGTAGTAATGACA+AGG + chr5.3:2532145-2532164 None:intergenic 45.0%
TCAAGCCAATGCATGACATG+TGG - chr5.3:2532363-2532382 MS.gene024760:intron 45.0%
TCATCCGATACACCCAACAA+AGG - chr5.3:2530743-2530762 MS.gene024760:intron 45.0%
TCATTAGAAGTAGAGGGTGG+TGG + chr5.3:2530698-2530717 None:intergenic 45.0%
TGCCACCAGTTCCAGTAAAA+TGG + chr5.3:2533451-2533470 None:intergenic 45.0%
TTGTTGGGTGTATCGGATGA+TGG + chr5.3:2530743-2530762 None:intergenic 45.0%
! ACCCATTTTACTGGAACTGG+TGG - chr5.3:2533446-2533465 MS.gene024760:CDS 45.0%
! CAATTGGCTCAATGTCTCCT+AGG - chr5.3:2532548-2532567 MS.gene024760:CDS 45.0%
! CGTGAAACTGCAGAAGCTTT+TGG - chr5.3:2533479-2533498 MS.gene024760:CDS 45.0%
! GATTGGTTCAAGGCATACCT+AGG - chr5.3:2532945-2532964 MS.gene024760:intron 45.0%
! GCAGCACAAAAGTACATGCA+AGG - chr5.3:2531894-2531913 MS.gene024760:intron 45.0%
! TGATGGACGACATAAAGGCA+AGG + chr5.3:2530726-2530745 None:intergenic 45.0%
!! TCGGATGATGGACGACATAA+AGG + chr5.3:2530731-2530750 None:intergenic 45.0%
!! TTTGGTCGTGCCATTTCACA+AGG - chr5.3:2531455-2531474 MS.gene024760:intron 45.0%
!!! TTTTTTTTTACTTATATTTA+AGG + chr5.3:2531057-2531076 None:intergenic 5.0%
ATGGTATGGTCCGCTTGGAT+TGG + chr5.3:2531022-2531041 None:intergenic 50.0%
ATTCCCGGAGAAGAAGACCT+AGG + chr5.3:2532965-2532984 None:intergenic 50.0%
CACCATGTAGATCTGCACCT+AGG + chr5.3:2532568-2532587 None:intergenic 50.0%
CTCCTAGGTGCAGATCTACA+TGG - chr5.3:2532563-2532582 MS.gene024760:CDS 50.0%
GAAACGTGCAATGGAGGCTT+TGG - chr5.3:2530547-2530566 MS.gene024760:CDS 50.0%
GAACAATGGTATGGTCCGCT+TGG + chr5.3:2531027-2531046 None:intergenic 50.0%
GGACGACATAAAGGCAAGGA+TGG + chr5.3:2530722-2530741 None:intergenic 50.0%
GGCCTGATGGAACAATGGTA+TGG + chr5.3:2531036-2531055 None:intergenic 50.0%
TACTACAGCCCTGCAGTTTG+TGG - chr5.3:2532154-2532173 MS.gene024760:intron 50.0%
TCTGCTCACAACTAATGGGG+AGG - chr5.3:2531670-2531689 MS.gene024760:CDS 50.0%
! AAAAAGGGTATGCGTGCCAC+TGG + chr5.3:2533018-2533037 None:intergenic 50.0%
! AAAAGGGTATGCGTGCCACT+GGG + chr5.3:2533017-2533036 None:intergenic 50.0%
! CGTGCCACTGGGAATGAAAA+GGG + chr5.3:2533006-2533025 None:intergenic 50.0%
! TCCTCCCTTTTCATTCCCAG+TGG - chr5.3:2532999-2533018 MS.gene024760:intron 50.0%
GCCACTGGGAATGAAAAGGG+AGG + chr5.3:2533003-2533022 None:intergenic 55.0%
TGCTGGAAAGCCACTCTGCT+TGG - chr5.3:2534540-2534559 MS.gene024760:CDS 55.0%
! GCGTGCCACTGGGAATGAAA+AGG + chr5.3:2533007-2533026 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 2530530 2534596 2530530 ID=MS.gene024760
chr5.3 mRNA 2530530 2534596 2530530 ID=MS.gene024760.t1;Parent=MS.gene024760
chr5.3 exon 2534362 2534596 2534362 ID=MS.gene024760.t1.exon1;Parent=MS.gene024760.t1
chr5.3 CDS 2534362 2534596 2534362 ID=cds.MS.gene024760.t1;Parent=MS.gene024760.t1
chr5.3 exon 2533650 2533685 2533650 ID=MS.gene024760.t1.exon2;Parent=MS.gene024760.t1
chr5.3 CDS 2533650 2533685 2533650 ID=cds.MS.gene024760.t1;Parent=MS.gene024760.t1
chr5.3 exon 2533435 2533508 2533435 ID=MS.gene024760.t1.exon3;Parent=MS.gene024760.t1
chr5.3 CDS 2533435 2533508 2533435 ID=cds.MS.gene024760.t1;Parent=MS.gene024760.t1
chr5.3 exon 2533030 2533295 2533030 ID=MS.gene024760.t1.exon4;Parent=MS.gene024760.t1
chr5.3 CDS 2533030 2533295 2533030 ID=cds.MS.gene024760.t1;Parent=MS.gene024760.t1
chr5.3 exon 2532706 2532774 2532706 ID=MS.gene024760.t1.exon5;Parent=MS.gene024760.t1
chr5.3 CDS 2532706 2532774 2532706 ID=cds.MS.gene024760.t1;Parent=MS.gene024760.t1
chr5.3 exon 2532527 2532585 2532527 ID=MS.gene024760.t1.exon6;Parent=MS.gene024760.t1
chr5.3 CDS 2532527 2532585 2532527 ID=cds.MS.gene024760.t1;Parent=MS.gene024760.t1
chr5.3 exon 2531596 2531697 2531596 ID=MS.gene024760.t1.exon7;Parent=MS.gene024760.t1
chr5.3 CDS 2531596 2531697 2531596 ID=cds.MS.gene024760.t1;Parent=MS.gene024760.t1
chr5.3 exon 2530530 2530627 2530530 ID=MS.gene024760.t1.exon8;Parent=MS.gene024760.t1
chr5.3 CDS 2530530 2530627 2530530 ID=cds.MS.gene024760.t1;Parent=MS.gene024760.t1
Gene Sequence

>MS.gene024760

ATGGCTGCTGAATCAAGGAAACGTGCAATGGAGGCTTTGGAGAGAAGAATTCAAACTGAACATAAACTAAAAGAAAAGAAAAACAAAAGGGATATAAATCATCAACATATCCTAAAAGAAAAGAAAATCATTAAGTCTATAAACGAAGATGTAAAATCATCTATTCCACCACCCTCTACTTCTAATGATCCATCCTTGCCTTTATGTCGTCCATCATCCGATACACCCAACAAAGGTAATTCAAATTTATCTTGTTTTATTAAGATATACTATTAAGCACTTATTCAATATGACACTTAGGATCTGTTTTGATTGGCTTATTTTTTAGCTTATGTAAATAAATACGCTTTTATGTTAATTCTTATGTTCTCACTAACGAAAATTGTATCTTCATAAGCTGTTTTTTCATAAACTACATTGACAAGCTTATGAAAATACATAAAAGTTTATTTATTTGCTTAAGCTGTTTTGCATAAGCTCAAAAATAAGCCAATCCAAGCGGACCATACCATTGTTCCATCAGGCCTTAAATATAAGTAAAAAAAAAAAGTTAATACATTTATGTGGTTCAAATACATGTACTTTTTGCTTATGATTATTTTTAAGGCTGGAGGGAGTATCATATCATACTAGAGCTTATGCATAAGCTGTTTCTACATTTCAAGAGGGAATAAGCAATGTGGAGGAACTTATGAACATAAGCTGAAAACAGTTCATAATCATATCATAATTCATAAACTATTTTCTTAAGCTCTTCCAAACAGTCATGCAAGTATTTATGTCATAAGATAAACCCAAATGCATTTTTCGGGCTAGAATATAAGATTTTATTCTTTTTTTTTTTGAGAGAAATATAAGATTTTATTCTTGTTTATTGTTAAAGCTGATACTTTTTTATTTCATTTTCTTAGGGAATTTCGGTCTTTTTGGTCGTGCCATTTCACAAGGTACTGTACTGTCGATATAACAGCAAGACTAAGATTCTTTCTTAAGTTTCTTCATTTTGATTTCTGAAGGTTTTGTAATTATATTTAATTTGTAACTTCAATTTATGTGGGAAACTGAAGTAACTAGCTATTAATCTGTAGAGAAAGAAGATGGTCCAGAATATGCCCAACTTTCTGTGACTGTAAATGAAAATCTGCTCACAACTAATGGGGAGGTATTTAATTCAGATCAACTTCTCTTTTATAATTCCAAAAAGTCAATATGTTCAATCTCCTTTGAAGTCTGAACTCTAAAAAGAATTAATCTAAGATTATAACTTCCCTGATTGTTCTAATTTGACTTATGTTCTGCAGTTTTCTTCTGAAAGAGGAGGTTCAGTTTCCGAAATATTGCATGAACTTCTTCAGAAGGGAGATGCAGCACAAAAGTACATGCAAGGATCTAGAAGCATGAAAATCGACAGCTATATCCTTCTTGATAATTTTGTGCAAGGACGCGCACTTTCTTCATCTTCTCAAACAAGGGCTTTGCAACTTCATTCAAAACGTTCTAAGAAGCACATGTCCATGAAACAACATAAAAAACATGGATCAATGGATCTTCCTAAAGAGTTCCATAAGTAAGTTCAAGGTCTCTAAACTACACTTTATGGAAGTATGTTGGTCCTTGTCATTACTACTACAGCCCTGCAGTTTGTGGTAGTGTATACTGTTGTGAGAAATTTTTCATTTCGTCTTTCATTGGGGAATTCTTAGATTCATGCTAGGAACAAATAAAGTGCTATTCATTTTGCTTTATTCTAATTGCTTAAATTTGTCTACAATGATATTCTTTTGATTACCTAATCAGTAATCACTGTTCATTTTGATTACAGATTTGACATTTTCAAGCCAATGCATGACATGTGGAAAGACTATATAAAGTTGTTGCTTAAATCCACTGGGTACTGTTATTAAATCCTTGCTATTGATGAATTGCACAGATTCTTATCTTCAAGTTTTTCAGCACTTTTATTCTCTCACGGCTTTTGTAATTATGACAACAAACCTGTTTATTGTTCCAGGAATAATCAATTGGCTCAATGTCTCCTAGGTGCAGATCTACATGGTGCTATTATTTTAGGTTTGACCACACTCTATTTTTGTTTTTTGTTTTTGGATGATTTGTGAACACCTACAACAGAAAATGCTAAACCATTTCATTTATCTTGAGCTTTTTGGATAATTACAAGGACAGTTATTTTGTCATTGGTTGGATGTTAATTATTTCCCACGGATGCTCATGTCTTTATGTGTAAATATTTCATATGCATCGAAAGGTGTGTTAAAATTGTTGCGCCGCTGTAATGAAACCTGTGAATGCCTACTTTTGGTGTTCTTAGAAAGAGTTGGAGTAGAAGTATTTTACGCAATCATTGGTATTTTATTGTTGCAACTTGCAATAAGTTCAATAGTAAGATGAGCTTCTGATTGGTTCAAGGCATACCTAGGTCTTCTTCTCCGGGAATGTTTCTCATTTGAATCCTCCCTTTTCATTCCCAGTGGCACGCATACCCTTTTTTCATGCTCCTTACACTTGGATTTTTTTTTTTTTTTAAAGTTGCTAGAACTTATGTTGAATGCTTTTAGGTGTTTATTCGAATCAATTATTTTAAAATGCATTTCTATGAGTGTTGTTTTTAGTTTAATGTTATCATGTTGATAATTTTCTATATCCAAAACTCCTAGATGACTCAACATGCATTGTTTTTCAATTTAGAAAAGAGTTGTGCTTTTGAGACTGCTTCAAAACAAATACAAATTTTTTAGCCTCTACCTCCTAAATAGTTGTCTGCTAGTTATCACTGACTGCACTATATCCACATGTTATGCAGACAAATTTTTTAGCCTCTACCTCCTAAATAGTTGTCTGCTAGTTATCACTGACTGCACTATATCCACATGTTATGCAGTTGTGGAGTGTAAACTAACCCATTTTACTGGAACTGGTGGCATCATGATTCGTGAAACTGCAGAAGCTTTTGGGATAATCACTGAAGATAATAAATTCCGAGGTAATCCTTTCACTACTTAAAAATAGAATCTGTTCTAGCATTACCAGAGCTGTTATTCCTGTATTTCTCAAGTATTAATGCTTATTGAATATACACAGTCGTGTGTGTATGCTTTTCTTATACCAGTGTTTGCTGTACAAATTTGATAATTAATGAATAATAAGGAGTTTGCACTTCCGTTTTGAAACTTTAGCATAGTTTAAACAGTAATTGTTTTTGAATTTTTATATAAATTAAAGACTAATGACAAATAATCAATGTGTTCAGTTGCTTTTAAAATGGAGCTTGTGAACATAGAAAAGTACAGCTTATATGTTTGAATGTAAAGGAAAATTTCTGTTTTGTTTAACTTGAGAAGATGTATTTTATGACAGGCATGGAATTTTCTGTTTCATGTTTCCGCTTTCTTGAGTAACAAGCAGATATGATAGTCATTCTTATAAACAATATGGCTGAGATTCTTATTTGGCACTATTAGATTGTCCATTATTAGATTGTCCTATCAGGTTATATCTCAAGTATTCTGCAGAAACCAACCAGATTTGCTACATATAATTGTACGGAGATCTGAAGCTGTTTTAACTTTTAATGTGATCGTATATTTCCTATTGATTTTTTTACTCGTCTGTTTCTAATTTACCTAATTTACGATTGAATCACTTTTTATTTAGGGTAGAATGCTCCAAAGTTTTAGTTAGATCAAAAACCCATTTTCTCTTTCTTAATTCTTCCCCTTTTACTAAGAAAATGAAATATATACTTTGACTCGAAAGTCGTTAATAGGTTCATATGTGACACTTACAATATTATGGCTGAATTGGTTAAGAATTAGTGACCTTGAGCATCACAATTCTGTGTTCCGTTTGCTTAAGTTGAAGTTTTAATGACTTATCAGTTCTGGTATCTATTTTTTCTCTAATATCTTTTCAAACATGTGTTCACCAAATACTTTGATTTGTTAATTGCAGTTGTTCCGAAGAAGGGTTCTGTATTTGTACTACAAGTTGATTGCTGGAAAGCCACTCTGCTTGGAGATAAACTAGATTCAAGAAAGGTTGGATTATGA
Protein sequence

>MS.gene024760.t1

MAAESRKRAMEALERRIQTEHKLKEKKNKRDINHQHILKEKKIIKSINEDVKSSIPPPSTSNDPSLPLCRPSSDTPNKGNFGLFGRAISQEKEDGPEYAQLSVTVNENLLTTNGEFSSERGGSVSEILHELLQKGDAAQKYMQGSRSMKIDSYILLDNFVQGRALSSSSQTRALQLHSKRSKKHMSMKQHKKHGSMDLPKEFHKFDIFKPMHDMWKDYIKLLLKSTGNNQLAQCLLGADLHGAIILVVECKLTHFTGTGGIMIRETAEAFGIITEDNKFRVVPKKGSVFVLQVDCWKATLLGDKLDSRKVGL