Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015759.t1 | RHN43669.1 | 95 | 219 | 11 | 0 | 3 | 221 | 4 | 222 | 5.40E-104 | 387.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015759.t1 | A0A396GR81 | 95.0 | 219 | 11 | 0 | 3 | 221 | 4 | 222 | 3.9e-104 | 387.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21881 | MS.gene015759 | PPI |
| MS.gene024760 | MS.gene015759 | PPI |
| MS.gene068020 | MS.gene015759 | PPI |
| MS.gene053583 | MS.gene015759 | PPI |
| MS.gene058121 | MS.gene015759 | PPI |
| MS.gene21743 | MS.gene015759 | PPI |
| MS.gene90225 | MS.gene015759 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015759.t1 | MTR_8g103265 | 93.607 | 219 | 14 | 0 | 3 | 221 | 4 | 222 | 1.63e-141 | 394 |
| MS.gene015759.t1 | MTR_8g103265 | 95.322 | 171 | 8 | 0 | 51 | 221 | 3 | 173 | 4.58e-119 | 336 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015759.t1 | AT4G01790 | 49.682 | 157 | 67 | 1 | 33 | 189 | 22 | 166 | 5.94e-48 | 155 |
Find 47 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCATTGCTGTTGGAATTA+AGG | 0.157846 | 4.3:+2218444 | MS.gene015759:CDS |
| TTTCACTGACTGCAGGTTAA+AGG | 0.230538 | 4.3:+2218954 | MS.gene015759:intron |
| TATTATCCTTAACAAATATC+AGG | 0.234820 | 4.3:-2218378 | None:intergenic |
| TTGTTTCCACCATGCTTCTT+TGG | 0.268701 | 4.3:-2216537 | None:intergenic |
| GACAAAGCATCTTCAAAGTT+TGG | 0.272288 | 4.3:+2218336 | MS.gene015759:CDS |
| TGCAGCAACAATTTGCTATT+GGG | 0.276797 | 4.3:+2217744 | MS.gene015759:intron |
| TTGCAGCAACAATTTGCTAT+TGG | 0.304157 | 4.3:+2217743 | MS.gene015759:intron |
| TTTGTATTGGGATTGGGATT+GGG | 0.315716 | 4.3:-2216561 | None:intergenic |
| GTTTGTATTGGGATTGGGAT+TGG | 0.316336 | 4.3:-2216562 | None:intergenic |
| GTTCTTTGCCAGAAAAGATA+TGG | 0.347038 | 4.3:+2217612 | MS.gene015759:CDS |
| GTAAGGTTTGAGTTTGTATT+GGG | 0.348558 | 4.3:-2216573 | None:intergenic |
| AAAGAAGGTTCTTTGAGATT+AGG | 0.350873 | 4.3:+2218400 | MS.gene015759:CDS |
| ACAAAGTTTCCCTGTTTGTC+AGG | 0.362507 | 4.3:-2219080 | None:intergenic |
| AGTAAGGTTTGAGTTTGTAT+TGG | 0.373435 | 4.3:-2216574 | None:intergenic |
| AACACCTTCAGTTAAACTTC+AGG | 0.377815 | 4.3:+2217862 | MS.gene015759:CDS |
| CCAGCTGAATTTGATTCATC+AGG | 0.390898 | 4.3:-2219035 | None:intergenic |
| TTTGAGTTTGTATTGGGATT+GGG | 0.391927 | 4.3:-2216567 | None:intergenic |
| ACTTTCTGCAGTTGCTATGA+AGG | 0.395034 | 4.3:+2216742 | MS.gene015759:intron |
| TGTTCCCCTGATATTTGTTA+AGG | 0.407666 | 4.3:+2218372 | MS.gene015759:CDS |
| GTTTGAGTTTGTATTGGGAT+TGG | 0.413520 | 4.3:-2216568 | None:intergenic |
| TTTGTTAAGGATAATAAAGA+AGG | 0.432172 | 4.3:+2218385 | MS.gene015759:CDS |
| GAATCAGCAAGGCATTTAGA+TGG | 0.437664 | 4.3:+2217587 | MS.gene015759:CDS |
| ACATAGTTTCTAGAGAAGTA+AGG | 0.465317 | 4.3:-2216590 | None:intergenic |
| AAGGATTGATTGGAGCAGAT+TGG | 0.472942 | 4.3:-2216776 | None:intergenic |
| ATTATCCTTAACAAATATCA+GGG | 0.488976 | 4.3:-2218377 | None:intergenic |
| ATCTGCTCCAATCAATCCTT+AGG | 0.493050 | 4.3:+2216779 | MS.gene015759:CDS |
| TTGAAAACTGCCATTGCTGT+TGG | 0.496333 | 4.3:+2218436 | MS.gene015759:CDS |
| CAAAGTTTCCCTGTTTGTCA+GGG | 0.499070 | 4.3:-2219079 | None:intergenic |
| TTCAAAGTTTGGCTTCATCA+AGG | 0.506495 | 4.3:+2218347 | MS.gene015759:CDS |
| CCTGATGAATCAAATTCAGC+TGG | 0.516597 | 4.3:+2219035 | MS.gene015759:CDS |
| GCAGCAACAATTTGCTATTG+GGG | 0.528210 | 4.3:+2217745 | MS.gene015759:intron |
| AACCGTGTGCAGAGTTTGAA+AGG | 0.553964 | 4.3:+2217801 | MS.gene015759:CDS |
| TTATGATTGCTTGTGACTGA+AGG | 0.557148 | 4.3:-2217839 | None:intergenic |
| GCCAGAAAAGATATGGACAA+AGG | 0.562195 | 4.3:+2217619 | MS.gene015759:CDS |
| CGCTATTAATAAAATTGTCG+AGG | 0.562774 | 4.3:+2218980 | MS.gene015759:CDS |
| CACACGGTTTCATACGCTCT+AGG | 0.572427 | 4.3:-2217787 | None:intergenic |
| GACCTTTCAAACTCTGCACA+CGG | 0.575228 | 4.3:-2217803 | None:intergenic |
| AACCTTAATTCCAACAGCAA+TGG | 0.585166 | 4.3:-2218446 | None:intergenic |
| TATGATTGCTTGTGACTGAA+GGG | 0.589422 | 4.3:-2217838 | None:intergenic |
| TCAACCTGAAGTTTAACTGA+AGG | 0.601860 | 4.3:-2217866 | None:intergenic |
| TTTCAACACCCTGACAAACA+GGG | 0.614691 | 4.3:+2219071 | MS.gene015759:CDS |
| CTGAATTTGATTCATCAGGT+CGG | 0.627196 | 4.3:-2219031 | None:intergenic |
| GCTAAAACTCCAAAGAAGCA+TGG | 0.636739 | 4.3:+2216528 | MS.gene015759:CDS |
| TTATCCTTAACAAATATCAG+GGG | 0.650486 | 4.3:-2218376 | None:intergenic |
| CTTCTGACTGTAGCTCACGA+TGG | 0.681030 | 4.3:+2218311 | MS.gene015759:CDS |
| AAAACTCCAAAGAAGCATGG+TGG | 0.697297 | 4.3:+2216531 | MS.gene015759:CDS |
| GATTGCTTGTGACTGAAGGG+AGG | 0.699866 | 4.3:-2217835 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTGTAAATTATTTC+GGG | + | chr4.3:2218612-2218631 | MS.gene015759:intron | 10.0% |
| !!! | TACCAAAATTAAAATTTTCA+CGG | - | chr4.3:2216833-2216852 | None:intergenic | 15.0% |
| !!! | TTTTATCAATTTTGTATGTT+TGG | + | chr4.3:2216953-2216972 | MS.gene015759:intron | 15.0% |
| !! | AAACTAGTTATTTATTACCA+AGG | - | chr4.3:2218162-2218181 | None:intergenic | 20.0% |
| !! | AACAATATCAAATGTGAAAA+GGG | - | chr4.3:2216631-2216650 | None:intergenic | 20.0% |
| !! | ACTTAGGTAAAAGTAATATA+TGG | + | chr4.3:2218189-2218208 | MS.gene015759:intron | 20.0% |
| !! | ATATTAAAAATAGAGTAAGC+TGG | - | chr4.3:2217981-2218000 | None:intergenic | 20.0% |
| !! | ATTATCCTTAACAAATATCA+GGG | - | chr4.3:2218380-2218399 | None:intergenic | 20.0% |
| !! | TATTATCCTTAACAAATATC+AGG | - | chr4.3:2218381-2218400 | None:intergenic | 20.0% |
| !! | TTTGTTAAGGATAATAAAGA+AGG | + | chr4.3:2218385-2218404 | MS.gene015759:CDS | 20.0% |
| !!! | ATTTTATTTTATGATGATGC+AGG | + | chr4.3:2218276-2218295 | MS.gene015759:intron | 20.0% |
| !!! | CATTCATATGTTTTATAGTT+AGG | - | chr4.3:2217665-2217684 | None:intergenic | 20.0% |
| !!! | TTAATATTTCTACCTTTACA+TGG | + | chr4.3:2217994-2218013 | MS.gene015759:intron | 20.0% |
| !!! | TTATTGTTTGAAATCAATCT+TGG | - | chr4.3:2217068-2217087 | None:intergenic | 20.0% |
| !!! | TTTCTTTTATTCTGATATGA+AGG | + | chr4.3:2217889-2217908 | MS.gene015759:intron | 20.0% |
| ! | AAACTGATATATAGAAATGC+AGG | - | chr4.3:2218713-2218732 | None:intergenic | 25.0% |
| ! | AACTCCTAGTATAATTTGAA+GGG | - | chr4.3:2218081-2218100 | None:intergenic | 25.0% |
| ! | AACTTAAAGTTGTTTATGTC+TGG | + | chr4.3:2216865-2216884 | MS.gene015759:intron | 25.0% |
| ! | ACAATATCAAATGTGAAAAG+GGG | - | chr4.3:2216630-2216649 | None:intergenic | 25.0% |
| ! | CACAAGATATATATTCTGTT+TGG | + | chr4.3:2218483-2218502 | MS.gene015759:intron | 25.0% |
| ! | CAGATCTTATTAGCAAAATA+AGG | - | chr4.3:2218736-2218755 | None:intergenic | 25.0% |
| ! | CATGTAAAGTGATTTATGTT+TGG | - | chr4.3:2217169-2217188 | None:intergenic | 25.0% |
| ! | GAACAATATCAAATGTGAAA+AGG | - | chr4.3:2216632-2216651 | None:intergenic | 25.0% |
| ! | GAATGAATTTAGCAATATGT+AGG | + | chr4.3:2217680-2217699 | MS.gene015759:intron | 25.0% |
| ! | TAGTTAGGAAAATCAAGTTA+AGG | - | chr4.3:2217650-2217669 | None:intergenic | 25.0% |
| ! | TGATTGTGATATTGAAAACT+AGG | - | chr4.3:2218672-2218691 | None:intergenic | 25.0% |
| ! | TTATCCTTAACAAATATCAG+GGG | - | chr4.3:2218379-2218398 | None:intergenic | 25.0% |
| ! | TTGAAAATTAGTCCTATGTT+TGG | - | chr4.3:2217356-2217375 | None:intergenic | 25.0% |
| ! | TTTACATGAAACTCAATTCT+GGG | + | chr4.3:2217181-2217200 | MS.gene015759:intron | 25.0% |
| !! | AACTAGTTTATTCTGTACTT+AGG | + | chr4.3:2218173-2218192 | MS.gene015759:intron | 25.0% |
| !! | GTGAATATATTTTCTCTTCA+AGG | - | chr4.3:2218256-2218275 | None:intergenic | 25.0% |
| !! | TAGAGTTTACTTGATAACAA+TGG | - | chr4.3:2216699-2216718 | None:intergenic | 25.0% |
| !! | TATTTTACCTAAGGATTGAT+TGG | - | chr4.3:2216789-2216808 | None:intergenic | 25.0% |
| !!! | AAGCTAGAAATATTAGCTTT+TGG | + | chr4.3:2217213-2217232 | MS.gene015759:intron | 25.0% |
| !!! | AGCTAGAAATATTAGCTTTT+GGG | + | chr4.3:2217214-2217233 | MS.gene015759:intron | 25.0% |
| !!! | ATAACCTTCTAAAGCTATTT+TGG | + | chr4.3:2218892-2218911 | MS.gene015759:intron | 25.0% |
| !!! | TGCCGTGAAAATTTTAATTT+TGG | + | chr4.3:2216828-2216847 | MS.gene015759:intron | 25.0% |
| AAAAGCCTAACTATAACTAC+CGG | - | chr4.3:2218039-2218058 | None:intergenic | 30.0% | |
| ATAGTCATATAACGTTTACC+TGG | + | chr4.3:2217711-2217730 | MS.gene015759:intron | 30.0% | |
| ATGCTAAACATCAATTGTAG+AGG | - | chr4.3:2217109-2217128 | None:intergenic | 30.0% | |
| CAACTCCTAGTATAATTTGA+AGG | - | chr4.3:2218082-2218101 | None:intergenic | 30.0% | |
| CAGAATATATATCTTGTGTG+AGG | - | chr4.3:2218481-2218500 | None:intergenic | 30.0% | |
| CGCTATTAATAAAATTGTCG+AGG | + | chr4.3:2218980-2218999 | MS.gene015759:CDS | 30.0% | |
| CGGAAAATTAAGCTTATATC+TGG | - | chr4.3:2217328-2217347 | None:intergenic | 30.0% | |
| CTTTACATGAAACTCAATTC+TGG | + | chr4.3:2217180-2217199 | MS.gene015759:intron | 30.0% | |
| GACACATTAAACTCAAGAAA+TGG | - | chr4.3:2218776-2218795 | None:intergenic | 30.0% | |
| GGATACATTCATGTAAAAGT+AGG | - | chr4.3:2217148-2217167 | None:intergenic | 30.0% | |
| GTAATTGATTATCGCATGTT+CGG | + | chr4.3:2217014-2217033 | MS.gene015759:intron | 30.0% | |
| TAACTATTTACGGTCAAATC+AGG | + | chr4.3:2217260-2217279 | MS.gene015759:intron | 30.0% | |
| TGAAAACTAGGATTCAACAA+GGG | - | chr4.3:2218660-2218679 | None:intergenic | 30.0% | |
| TGATCCCTTCAAATTATACT+AGG | + | chr4.3:2218074-2218093 | MS.gene015759:intron | 30.0% | |
| TTAAAAATAGAGTAAGCTGG+AGG | - | chr4.3:2217978-2217997 | None:intergenic | 30.0% | |
| TTCTTGAGTTTAATGTGTCA+TGG | + | chr4.3:2218777-2218796 | MS.gene015759:intron | 30.0% | |
| TTGAAAACTAGGATTCAACA+AGG | - | chr4.3:2218661-2218680 | None:intergenic | 30.0% | |
| ! | ACATAGTTTCTAGAGAAGTA+AGG | - | chr4.3:2216593-2216612 | None:intergenic | 30.0% |
| ! | ACTAACTGTGTTTGAAATTG+TGG | - | chr4.3:2218136-2218155 | None:intergenic | 30.0% |
| ! | AGTAAGGTTTGAGTTTGTAT+TGG | - | chr4.3:2216577-2216596 | None:intergenic | 30.0% |
| ! | GTAAGGTTTGAGTTTGTATT+GGG | - | chr4.3:2216576-2216595 | None:intergenic | 30.0% |
| ! | TTGTTTGAAATCAATCTTGG+AGG | - | chr4.3:2217065-2217084 | None:intergenic | 30.0% |
| ! | TTTGAGTTTGTATTGGGATT+GGG | - | chr4.3:2216570-2216589 | None:intergenic | 30.0% |
| !! | AAAGAAGGTTCTTTGAGATT+AGG | + | chr4.3:2218400-2218419 | MS.gene015759:CDS | 30.0% |
| !! | GAAACCAAAATAGCTTTAGA+AGG | - | chr4.3:2218899-2218918 | None:intergenic | 30.0% |
| !! | TTTGGTTTCACTTTTGTAGA+AGG | + | chr4.3:2216971-2216990 | MS.gene015759:intron | 30.0% |
| !! | TTTTGGGCAGAATTGATTTT+GGG | + | chr4.3:2217230-2217249 | MS.gene015759:intron | 30.0% |
| AAATGCAGGATTGAAAAGCA+AGG | - | chr4.3:2218699-2218718 | None:intergenic | 35.0% | |
| AACACCTTCAGTTAAACTTC+AGG | + | chr4.3:2217862-2217881 | MS.gene015759:CDS | 35.0% | |
| AACCTTAATTCCAACAGCAA+TGG | - | chr4.3:2218449-2218468 | None:intergenic | 35.0% | |
| AAGTAATATATGGCTGCTTC+TGG | + | chr4.3:2218199-2218218 | MS.gene015759:intron | 35.0% | |
| AATAGCAAATTGTTGCTGCA+AGG | - | chr4.3:2217744-2217763 | None:intergenic | 35.0% | |
| AATGCAGGATTGAAAAGCAA+GGG | - | chr4.3:2218698-2218717 | None:intergenic | 35.0% | |
| AATTGTGGATGCGAAAACAA+TGG | - | chr4.3:2218121-2218140 | None:intergenic | 35.0% | |
| ATATCAAATGTGAAAAGGGG+CGG | - | chr4.3:2216627-2216646 | None:intergenic | 35.0% | |
| ATTTACGGTCAAATCAGGTT+TGG | + | chr4.3:2217265-2217284 | MS.gene015759:intron | 35.0% | |
| CTGAATTTGATTCATCAGGT+CGG | - | chr4.3:2219034-2219053 | None:intergenic | 35.0% | |
| GTTCTTTGCCAGAAAAGATA+TGG | + | chr4.3:2217612-2217631 | MS.gene015759:CDS | 35.0% | |
| TATGATTGCTTGTGACTGAA+GGG | - | chr4.3:2217841-2217860 | None:intergenic | 35.0% | |
| TCAACCTGAAGTTTAACTGA+AGG | - | chr4.3:2217869-2217888 | None:intergenic | 35.0% | |
| TTATGATTGCTTGTGACTGA+AGG | - | chr4.3:2217842-2217861 | None:intergenic | 35.0% | |
| TTCAACAAGGGAAGCTATTA+TGG | - | chr4.3:2218648-2218667 | None:intergenic | 35.0% | |
| TTGGAATTAAGGTTAGATCC+TGG | + | chr4.3:2218455-2218474 | MS.gene015759:intron | 35.0% | |
| TTTACGGTCAAATCAGGTTT+GGG | + | chr4.3:2217266-2217285 | MS.gene015759:intron | 35.0% | |
| TTTGTATTGGGATTGGGATT+GGG | - | chr4.3:2216564-2216583 | None:intergenic | 35.0% | |
| ! | ACCTTTGTCCATATCTTTTC+TGG | - | chr4.3:2217623-2217642 | None:intergenic | 35.0% |
| ! | ATTTATCTTTCACTGACTGC+AGG | + | chr4.3:2218947-2218966 | MS.gene015759:intron | 35.0% |
| ! | GACAAAGCATCTTCAAAGTT+TGG | + | chr4.3:2218336-2218355 | MS.gene015759:CDS | 35.0% |
| ! | GGGACTAGCATAACTATTTA+CGG | + | chr4.3:2217250-2217269 | MS.gene015759:intron | 35.0% |
| ! | GTATTTGAAGCACCATGTAA+AGG | - | chr4.3:2218009-2218028 | None:intergenic | 35.0% |
| ! | GTTTGAGTTTGTATTGGGAT+TGG | - | chr4.3:2216571-2216590 | None:intergenic | 35.0% |
| ! | TGTTCCCCTGATATTTGTTA+AGG | + | chr4.3:2218372-2218391 | MS.gene015759:CDS | 35.0% |
| ! | TTCAAAGTTTGGCTTCATCA+AGG | + | chr4.3:2218347-2218366 | MS.gene015759:CDS | 35.0% |
| !! | AGAAGAATTCAAGAGTGTCA+TGG | + | chr4.3:2218802-2218821 | MS.gene015759:intron | 35.0% |
| !! | CTTTTGGGCAGAATTGATTT+TGG | + | chr4.3:2217229-2217248 | MS.gene015759:intron | 35.0% |
| !! | TGCAGCAACAATTTGCTATT+GGG | + | chr4.3:2217744-2217763 | MS.gene015759:intron | 35.0% |
| !! | TTGCAGCAACAATTTGCTAT+TGG | + | chr4.3:2217743-2217762 | MS.gene015759:intron | 35.0% |
| !!! | CAAACACAGTTAGTTTTCCT+TGG | + | chr4.3:2218142-2218161 | MS.gene015759:intron | 35.0% |
| AACGCTGCTTAATGAAGTTG+AGG | + | chr4.3:2217423-2217442 | MS.gene015759:intron | 40.0% | |
| AACTATAACTACCGGTGCAT+GGG | - | chr4.3:2218031-2218050 | None:intergenic | 40.0% | |
| AAGCCATGGTCAAATAACAC+GGG | - | chr4.3:2218861-2218880 | None:intergenic | 40.0% | |
| AAGGATTGATTGGAGCAGAT+TGG | - | chr4.3:2216779-2216798 | None:intergenic | 40.0% | |
| ACAAAGTTTCCCTGTTTGTC+AGG | - | chr4.3:2219083-2219102 | None:intergenic | 40.0% | |
| ACGCTGCTTAATGAAGTTGA+GGG | + | chr4.3:2217424-2217443 | MS.gene015759:intron | 40.0% | |
| ACTTTCTGCAGTTGCTATGA+AGG | + | chr4.3:2216742-2216761 | MS.gene015759:intron | 40.0% | |
| ATCTGCTCCAATCAATCCTT+AGG | + | chr4.3:2216779-2216798 | MS.gene015759:CDS | 40.0% | |
| CAAAGTTTCCCTGTTTGTCA+GGG | - | chr4.3:2219082-2219101 | None:intergenic | 40.0% | |
| CAAGCCATGGTCAAATAACA+CGG | - | chr4.3:2218862-2218881 | None:intergenic | 40.0% | |
| CATATAACGTTTACCTGGAC+TGG | + | chr4.3:2217716-2217735 | MS.gene015759:intron | 40.0% | |
| CCAGCTGAATTTGATTCATC+AGG | - | chr4.3:2219038-2219057 | None:intergenic | 40.0% | |
| CCTGATGAATCAAATTCAGC+TGG | + | chr4.3:2219035-2219054 | MS.gene015759:CDS | 40.0% | |
| GAACTAGTAACAACAGGTAC+AGG | - | chr4.3:2217938-2217957 | None:intergenic | 40.0% | |
| GAAGAATTCAAGAGTCCAAC+AGG | + | chr4.3:2218828-2218847 | MS.gene015759:intron | 40.0% | |
| GCCAGAAAAGATATGGACAA+AGG | + | chr4.3:2217619-2217638 | MS.gene015759:CDS | 40.0% | |
| GCTAAAACTCCAAAGAAGCA+TGG | + | chr4.3:2216528-2216547 | MS.gene015759:CDS | 40.0% | |
| GCTTAATGAAGTTGAGGGAA+GGG | + | chr4.3:2217429-2217448 | MS.gene015759:intron | 40.0% | |
| GTTTGTATTGGGATTGGGAT+TGG | - | chr4.3:2216565-2216584 | None:intergenic | 40.0% | |
| TAAAATACTCACCGCCTGTT+TGG | + | chr4.3:2216802-2216821 | MS.gene015759:intron | 40.0% | |
| TAACTATAACTACCGGTGCA+TGG | - | chr4.3:2218032-2218051 | None:intergenic | 40.0% | |
| TATAGTGACATCTCAAGCCA+TGG | - | chr4.3:2218875-2218894 | None:intergenic | 40.0% | |
| TATATATCTTGTGTGAGGCC+AGG | - | chr4.3:2218476-2218495 | None:intergenic | 40.0% | |
| TGCGATGAACTAGTAACAAC+AGG | - | chr4.3:2217944-2217963 | None:intergenic | 40.0% | |
| TGCTTAATGAAGTTGAGGGA+AGG | + | chr4.3:2217428-2217447 | MS.gene015759:intron | 40.0% | |
| TTATCACCTGATCTTGCAAC+CGG | + | chr4.3:2217541-2217560 | MS.gene015759:intron | 40.0% | |
| TTGAAAACTGCCATTGCTGT+TGG | + | chr4.3:2218436-2218455 | MS.gene015759:CDS | 40.0% | |
| TTGTTTCCACCATGCTTCTT+TGG | - | chr4.3:2216540-2216559 | None:intergenic | 40.0% | |
| TTTCAACACCCTGACAAACA+GGG | + | chr4.3:2219071-2219090 | MS.gene015759:CDS | 40.0% | |
| ! | AAAACTCCAAAGAAGCATGG+TGG | + | chr4.3:2216531-2216550 | MS.gene015759:CDS | 40.0% |
| ! | ATGCACCGGTAGTTATAGTT+AGG | + | chr4.3:2218031-2218050 | MS.gene015759:intron | 40.0% |
| ! | GAATCAGCAAGGCATTTAGA+TGG | + | chr4.3:2217587-2217606 | MS.gene015759:CDS | 40.0% |
| ! | TGCCATTGCTGTTGGAATTA+AGG | + | chr4.3:2218444-2218463 | MS.gene015759:CDS | 40.0% |
| ! | TTTCACTGACTGCAGGTTAA+AGG | + | chr4.3:2218954-2218973 | MS.gene015759:intron | 40.0% |
| ! | TTTTCAACACCCTGACAAAC+AGG | + | chr4.3:2219070-2219089 | MS.gene015759:CDS | 40.0% |
| ! | TTTTCACGGCATAACCAAAC+AGG | - | chr4.3:2216819-2216838 | None:intergenic | 40.0% |
| !! | GCAGCAACAATTTGCTATTG+GGG | + | chr4.3:2217745-2217764 | MS.gene015759:intron | 40.0% |
| AACCGTGTGCAGAGTTTGAA+AGG | + | chr4.3:2217801-2217820 | MS.gene015759:CDS | 45.0% | |
| ATATATGGCTGCTTCTGGTG+TGG | + | chr4.3:2218204-2218223 | MS.gene015759:intron | 45.0% | |
| CTAGGAGTTGACAGTGTGTA+TGG | + | chr4.3:2218092-2218111 | MS.gene015759:intron | 45.0% | |
| GAATAACCGGTTGCAAGATC+AGG | - | chr4.3:2217550-2217569 | None:intergenic | 45.0% | |
| GACCTTTCAAACTCTGCACA+CGG | - | chr4.3:2217806-2217825 | None:intergenic | 45.0% | |
| TAGTCCTATGTTTGGACACG+CGG | - | chr4.3:2217348-2217367 | None:intergenic | 45.0% | |
| TATATGGCTGCTTCTGGTGT+GGG | + | chr4.3:2218205-2218224 | MS.gene015759:intron | 45.0% | |
| TGCTTCAAATACCCATGCAC+CGG | + | chr4.3:2218017-2218036 | MS.gene015759:intron | 45.0% | |
| ! | GGCGGTGAGTATTTTACCTA+AGG | - | chr4.3:2216798-2216817 | None:intergenic | 45.0% |
| ! | TGAGTCTGGGGGTACAAATA+CGG | + | chr4.3:2217300-2217319 | MS.gene015759:intron | 45.0% |
| ! | TTTTCCGCGTGTCCAAACAT+AGG | + | chr4.3:2217341-2217360 | MS.gene015759:intron | 45.0% |
| !! | GAACCCGTGTTATTTGACCA+TGG | + | chr4.3:2218855-2218874 | MS.gene015759:intron | 45.0% |
| !!! | TTATTTTTTGTAAATTATTT+CGG | + | chr4.3:2218611-2218630 | MS.gene015759:intron | 5.0% |
| AACCGGTTATTCCGATGAGC+AGG | + | chr4.3:2217558-2217577 | MS.gene015759:intron | 50.0% | |
| ACCGGTTATTCCGATGAGCA+GGG | + | chr4.3:2217559-2217578 | MS.gene015759:intron | 50.0% | |
| CACACGGTTTCATACGCTCT+AGG | - | chr4.3:2217790-2217809 | None:intergenic | 50.0% | |
| CTTCTGACTGTAGCTCACGA+TGG | + | chr4.3:2218311-2218330 | MS.gene015759:CDS | 50.0% | |
| GAAGTTGAGGGAAGGGTAGA+GGG | + | chr4.3:2217436-2217455 | MS.gene015759:intron | 50.0% | |
| GATTGCTTGTGACTGAAGGG+AGG | - | chr4.3:2217838-2217857 | None:intergenic | 50.0% | |
| GGTGACCCAATTGTGAGTCT+GGG | + | chr4.3:2217287-2217306 | MS.gene015759:intron | 50.0% | |
| GTACCCCCAGACTCACAATT+GGG | - | chr4.3:2217295-2217314 | None:intergenic | 50.0% | |
| GTGACCCAATTGTGAGTCTG+GGG | + | chr4.3:2217288-2217307 | MS.gene015759:intron | 50.0% | |
| TCACGGCATAACCAAACAGG+CGG | - | chr4.3:2216816-2216835 | None:intergenic | 50.0% | |
| TGAAGTTGAGGGAAGGGTAG+AGG | + | chr4.3:2217435-2217454 | MS.gene015759:intron | 50.0% | |
| TGACCCAATTGTGAGTCTGG+GGG | + | chr4.3:2217289-2217308 | MS.gene015759:intron | 50.0% | |
| TGTACCCCCAGACTCACAAT+TGG | - | chr4.3:2217296-2217315 | None:intergenic | 50.0% | |
| AACACGGGTTCGTTGCCTGT+TGG | - | chr4.3:2218846-2218865 | None:intergenic | 55.0% | |
| CCCCTGCTCATCGGAATAAC+CGG | - | chr4.3:2217563-2217582 | None:intergenic | 55.0% | |
| CCGGTTATTCCGATGAGCAG+GGG | + | chr4.3:2217560-2217579 | MS.gene015759:intron | 55.0% | |
| CGGTTATTCCGATGAGCAGG+GGG | + | chr4.3:2217561-2217580 | MS.gene015759:intron | 55.0% | |
| GATTCAACCCCCCTGCTCAT+CGG | - | chr4.3:2217572-2217591 | None:intergenic | 55.0% | |
| GGGTGACCCAATTGTGAGTC+TGG | + | chr4.3:2217286-2217305 | MS.gene015759:intron | 55.0% | |
| GGTTATTCCGATGAGCAGGG+GGG | + | chr4.3:2217562-2217581 | MS.gene015759:intron | 55.0% | |
| TTGCTGCAAGGTTCCAGTCC+AGG | - | chr4.3:2217732-2217751 | None:intergenic | 55.0% | |
| GCAGGGGGGTTGAATCAGCA+AGG | + | chr4.3:2217576-2217595 | MS.gene015759:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 2216507 | 2219118 | 2216507 | ID=MS.gene015759 |
| chr4.3 | mRNA | 2216507 | 2219118 | 2216507 | ID=MS.gene015759.t1;Parent=MS.gene015759 |
| chr4.3 | exon | 2216507 | 2216610 | 2216507 | ID=MS.gene015759.t1.exon1;Parent=MS.gene015759.t1 |
| chr4.3 | CDS | 2216507 | 2216610 | 2216507 | ID=cds.MS.gene015759.t1;Parent=MS.gene015759.t1 |
| chr4.3 | exon | 2216753 | 2216800 | 2216753 | ID=MS.gene015759.t1.exon2;Parent=MS.gene015759.t1 |
| chr4.3 | CDS | 2216753 | 2216800 | 2216753 | ID=cds.MS.gene015759.t1;Parent=MS.gene015759.t1 |
| chr4.3 | exon | 2217580 | 2217640 | 2217580 | ID=MS.gene015759.t1.exon3;Parent=MS.gene015759.t1 |
| chr4.3 | CDS | 2217580 | 2217640 | 2217580 | ID=cds.MS.gene015759.t1;Parent=MS.gene015759.t1 |
| chr4.3 | exon | 2217749 | 2217883 | 2217749 | ID=MS.gene015759.t1.exon4;Parent=MS.gene015759.t1 |
| chr4.3 | CDS | 2217749 | 2217883 | 2217749 | ID=cds.MS.gene015759.t1;Parent=MS.gene015759.t1 |
| chr4.3 | exon | 2218298 | 2218465 | 2218298 | ID=MS.gene015759.t1.exon5;Parent=MS.gene015759.t1 |
| chr4.3 | CDS | 2218298 | 2218465 | 2218298 | ID=cds.MS.gene015759.t1;Parent=MS.gene015759.t1 |
| chr4.3 | exon | 2218969 | 2219118 | 2218969 | ID=MS.gene015759.t1.exon6;Parent=MS.gene015759.t1 |
| chr4.3 | CDS | 2218969 | 2219118 | 2218969 | ID=cds.MS.gene015759.t1;Parent=MS.gene015759.t1 |
| Gene Sequence |
| Protein sequence |
