Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024815.t1 | XP_003610788.1 | 98.9 | 436 | 5 | 0 | 1 | 436 | 1 | 436 | 3.20E-257 | 897.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024815.t1 | Q8R1R3 | 28.4 | 194 | 128 | 5 | 149 | 338 | 136 | 322 | 9.4e-16 | 86.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024815.t1 | G7K527 | 98.9 | 436 | 5 | 0 | 1 | 436 | 1 | 436 | 2.3e-257 | 897.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024815 | MS.gene21791 | PPI |
| MS.gene024815 | MS.gene40498 | PPI |
| MS.gene058074 | MS.gene024815 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024815.t1 | MTR_5g007030 | 98.853 | 436 | 5 | 0 | 1 | 436 | 1 | 436 | 0.0 | 895 |
| MS.gene024815.t1 | MTR_5g007030 | 98.403 | 313 | 5 | 0 | 124 | 436 | 14 | 326 | 0.0 | 643 |
| MS.gene024815.t1 | MTR_3g092640 | 43.256 | 430 | 224 | 8 | 12 | 434 | 1 | 417 | 8.38e-120 | 356 |
| MS.gene024815.t1 | MTR_1g078030 | 43.230 | 421 | 198 | 8 | 17 | 435 | 9 | 390 | 4.88e-117 | 348 |
| MS.gene024815.t1 | MTR_4g005140 | 29.018 | 224 | 150 | 4 | 126 | 347 | 62 | 278 | 1.89e-31 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024815.t1 | AT4G14500 | 66.364 | 440 | 137 | 6 | 1 | 436 | 1 | 433 | 0.0 | 595 |
| MS.gene024815.t1 | AT3G23080 | 65.197 | 431 | 131 | 6 | 9 | 436 | 5 | 419 | 0.0 | 560 |
| MS.gene024815.t1 | AT3G23080 | 64.604 | 404 | 124 | 6 | 36 | 436 | 1 | 388 | 0.0 | 514 |
| MS.gene024815.t1 | AT3G23080 | 64.604 | 404 | 124 | 6 | 36 | 436 | 1 | 388 | 0.0 | 514 |
| MS.gene024815.t1 | AT1G64720 | 43.855 | 415 | 182 | 5 | 21 | 435 | 17 | 380 | 7.87e-121 | 357 |
| MS.gene024815.t1 | AT5G54170 | 45.327 | 428 | 213 | 6 | 23 | 434 | 6 | 428 | 1.61e-120 | 358 |
| MS.gene024815.t1 | AT4G14500 | 60.932 | 279 | 102 | 4 | 1 | 274 | 1 | 277 | 1.75e-116 | 343 |
| MS.gene024815.t1 | AT3G13062 | 29.934 | 304 | 189 | 9 | 136 | 431 | 84 | 371 | 3.90e-36 | 137 |
| MS.gene024815.t1 | AT3G13062 | 29.934 | 304 | 189 | 9 | 136 | 431 | 84 | 371 | 9.04e-36 | 137 |
| MS.gene024815.t1 | AT3G13062 | 29.167 | 312 | 189 | 9 | 136 | 431 | 84 | 379 | 9.02e-35 | 134 |
| MS.gene024815.t1 | AT1G55960 | 31.727 | 249 | 156 | 6 | 128 | 369 | 75 | 316 | 3.15e-30 | 121 |
| MS.gene024815.t1 | AT1G55960 | 28.829 | 222 | 121 | 6 | 128 | 344 | 75 | 264 | 1.82e-18 | 87.0 |
Find 122 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGCTTTGTATTGCATATT+TGG | 0.148571 | 5.4:-2610485 | None:intergenic |
| TGGGACTGTTGCTGTGGTTT+TGG | 0.168770 | 5.4:+2612002 | MS.gene024815:CDS |
| CCTAACTTTGCAACATCTTT+TGG | 0.178743 | 5.4:-2611733 | None:intergenic |
| AGTTAGTGAGGGATTTCTTC+TGG | 0.188486 | 5.4:+2610851 | MS.gene024815:CDS |
| TTCCCGATCACTACAGAAAA+AGG | 0.209070 | 5.4:-2611055 | None:intergenic |
| AATTGTTCACTGGATTAAAA+AGG | 0.263893 | 5.4:+2610954 | MS.gene024815:CDS |
| CCAAAAGATGTTGCAAAGTT+AGG | 0.281442 | 5.4:+2611733 | MS.gene024815:CDS |
| GGAGCAAGTTTCGTTTCTTA+TGG | 0.297226 | 5.4:+2608635 | MS.gene024815:CDS |
| TCCAGTTACAGAAGCTGATT+TGG | 0.305745 | 5.4:+2610391 | MS.gene024815:CDS |
| CGTCTGGGCTTATCGCGTTT+TGG | 0.309096 | 5.4:-2611505 | None:intergenic |
| GGATTATTTATTCGATGTTA+TGG | 0.311579 | 5.4:+2608468 | MS.gene024815:CDS |
| ATACATTAGGTCCGGTGATA+TGG | 0.313982 | 5.4:+2610349 | MS.gene024815:intron |
| ACAACCAGGCTTTCTTCTAA+TGG | 0.315169 | 5.4:+2611871 | MS.gene024815:CDS |
| TGCTATGTGCGGTTCCGATT+TGG | 0.329919 | 5.4:+2608536 | MS.gene024815:CDS |
| TCCAAATCAGCTTCTGTAAC+TGG | 0.335837 | 5.4:-2610392 | None:intergenic |
| TCTCTATTTGTCGCAGATAT+TGG | 0.336013 | 5.4:+2608719 | MS.gene024815:CDS |
| TGGAAACTTGCATTCGTTAG+AGG | 0.346382 | 5.4:+2611891 | MS.gene024815:CDS |
| AAAGTAGAGGTCTACGCGTC+TGG | 0.348134 | 5.4:-2611521 | None:intergenic |
| ATATTATCGCTCGAAGGATT+TGG | 0.353269 | 5.4:+2611079 | MS.gene024815:CDS |
| CATCTTCTTCATCTTCTTGA+AGG | 0.364952 | 5.4:+2610416 | MS.gene024815:CDS |
| CGAGCATTGTTGTTGGGAGC+AGG | 0.370322 | 5.4:+2612048 | MS.gene024815:CDS |
| GTTAGTGAGGGATTTCTTCT+GGG | 0.373539 | 5.4:+2610852 | MS.gene024815:CDS |
| TTTGTCGAGATGTGCATTGA+TGG | 0.384886 | 5.4:+2611840 | MS.gene024815:CDS |
| TGGACGGTTCCGCCGGGATT+CGG | 0.387516 | 5.4:+2608655 | MS.gene024815:CDS |
| TTGGAGGAATGCCCTCATAA+TGG | 0.394374 | 5.4:+2610925 | MS.gene024815:CDS |
| AATCTGCCGGGCATTGTTGA+TGG | 0.394962 | 5.4:-2611944 | None:intergenic |
| GTTAGAGGATGCGTCTTTGA+TGG | 0.400725 | 5.4:+2611906 | MS.gene024815:CDS |
| GATTCGGTGCTCGCCGTCTC+TGG | 0.407752 | 5.4:+2608671 | MS.gene024815:CDS |
| GACTTCTCTTCATCGGTCTT+CGG | 0.414196 | 5.4:+2608614 | MS.gene024815:CDS |
| GGCGTCATCAGAACACGAAT+TGG | 0.416015 | 5.4:-2608782 | None:intergenic |
| TGCGAGCATAGGATCCCATT+TGG | 0.417922 | 5.4:-2610890 | None:intergenic |
| GATTGGAAGTGGGTGGCCTT+AGG | 0.424995 | 5.4:+2611979 | MS.gene024815:CDS |
| CCATGTCTTCGTGATGCAAA+AGG | 0.428688 | 5.4:-2611705 | None:intergenic |
| TTTCTTATGGACGGTTCCGC+CGG | 0.430105 | 5.4:+2608648 | MS.gene024815:CDS |
| TGGAGGAATGCCCTCATAAT+GGG | 0.431673 | 5.4:+2610926 | MS.gene024815:CDS |
| GTAGGGCGAGCATTGTTGTT+GGG | 0.436511 | 5.4:+2612042 | MS.gene024815:CDS |
| ACAATTGATGTCCCATTATG+AGG | 0.437523 | 5.4:-2610937 | None:intergenic |
| GAATTACCGAGCAGCGTGTT+TGG | 0.438126 | 5.4:-2608815 | None:intergenic |
| CATCTTCTTGAAGGGAAAGA+TGG | 0.441427 | 5.4:+2610425 | MS.gene024815:CDS |
| ATCATGACCGCAAGCCAAAT+CGG | 0.444905 | 5.4:-2608550 | None:intergenic |
| TATGAAGAAACCTTCAATAA+CGG | 0.462966 | 5.4:+2608495 | MS.gene024815:CDS |
| ATCAACAATGCCCGGCAGAT+TGG | 0.463318 | 5.4:+2611946 | MS.gene024815:CDS |
| TGGAAGTGGGTGGCCTTAGG+TGG | 0.465831 | 5.4:+2611982 | MS.gene024815:CDS |
| GTCACGGCGTGGATTGGAAG+TGG | 0.467705 | 5.4:+2611968 | MS.gene024815:CDS |
| AGCAAGCCATCAACAATGCC+CGG | 0.473125 | 5.4:+2611938 | MS.gene024815:CDS |
| ATTTGGCTTGCGGTCATGAT+CGG | 0.474486 | 5.4:+2608553 | MS.gene024815:CDS |
| ACGAATGTTTCCGTTATTGA+AGG | 0.481101 | 5.4:-2608505 | None:intergenic |
| GTGGAATCTCGCAAAGGAGA+TGG | 0.484870 | 5.4:+2611658 | MS.gene024815:intron |
| GTTTGGTGATCGGTTGGTCA+TGG | 0.485828 | 5.4:+2608575 | MS.gene024815:CDS |
| GGTATTCACAGTGGTGCAGT+AGG | 0.489086 | 5.4:+2612024 | MS.gene024815:CDS |
| AGACGGCGAGCACCGAATCC+CGG | 0.489608 | 5.4:-2608667 | None:intergenic |
| GCGAGCATAGGATCCCATTT+GGG | 0.491899 | 5.4:-2610889 | None:intergenic |
| GCTCGAAGGATTTGGCAGGC+TGG | 0.494594 | 5.4:+2611087 | MS.gene024815:CDS |
| TGACAGCTCCCCACATTCCA+TGG | 0.497311 | 5.4:-2611762 | None:intergenic |
| AGATTGGTCACGGCGTGGAT+TGG | 0.502606 | 5.4:+2611962 | MS.gene024815:CDS |
| TGCGGTTCCGATTTGGCTTG+CGG | 0.503029 | 5.4:+2608543 | MS.gene024815:CDS |
| GTCATGATCGGTTTGGTGAT+CGG | 0.504723 | 5.4:+2608565 | MS.gene024815:CDS |
| AGTAGGGCGAGCATTGTTGT+TGG | 0.504978 | 5.4:+2612041 | MS.gene024815:CDS |
| TTCTTATGGACGGTTCCGCC+GGG | 0.508895 | 5.4:+2608649 | MS.gene024815:CDS |
| ATGGGACATCAATTGTTCAC+TGG | 0.510323 | 5.4:+2610944 | MS.gene024815:CDS |
| GCTTGCGGTCATGATCGGTT+TGG | 0.517226 | 5.4:+2608558 | MS.gene024815:CDS |
| CAAATATGCAATACAAAGCT+TGG | 0.518060 | 5.4:+2610486 | MS.gene024815:CDS |
| CAAGTTTCGTTTCTTATGGA+CGG | 0.518083 | 5.4:+2608639 | MS.gene024815:CDS |
| TCTAGTTGGGTAATCAAACC+TGG | 0.518454 | 5.4:+2611544 | MS.gene024815:CDS |
| TGATCGGTTTGGTGATCGGT+TGG | 0.518750 | 5.4:+2608569 | MS.gene024815:CDS |
| GGAAGTGGGTGGCCTTAGGT+GGG | 0.520331 | 5.4:+2611983 | MS.gene024815:CDS |
| GTTTCCATTAGAAGAAAGCC+TGG | 0.520462 | 5.4:-2611875 | None:intergenic |
| TAGGAGTTCGCCATGGAATG+TGG | 0.521492 | 5.4:+2611752 | MS.gene024815:CDS |
| CGCACACTGCAAAGTGTTGG+AGG | 0.521745 | 5.4:+2610909 | MS.gene024815:CDS |
| GAGCATTGTTGTTGGGAGCA+GGG | 0.522764 | 5.4:+2612049 | MS.gene024815:CDS |
| ATCTTCTTCATCTTCTTGAA+GGG | 0.522948 | 5.4:+2610417 | MS.gene024815:CDS |
| GGAAAGATGGAGAGATTGAC+TGG | 0.525971 | 5.4:+2610438 | MS.gene024815:CDS |
| TGGAATCTCGCAAAGGAGAT+GGG | 0.527938 | 5.4:+2611659 | MS.gene024815:CDS |
| TCATGGCGTCCACGGTGGAC+CGG | 0.529717 | 5.4:+2608592 | MS.gene024815:CDS |
| CATGTCTTCGTGATGCAAAA+GGG | 0.535250 | 5.4:-2611704 | None:intergenic |
| TGAGAGCATACCAGAATGCT+AGG | 0.537126 | 5.4:+2611803 | MS.gene024815:CDS |
| TCACGGCGTGGATTGGAAGT+GGG | 0.539745 | 5.4:+2611969 | MS.gene024815:CDS |
| CCACGCCGTGACCAATCTGC+CGG | 0.541108 | 5.4:-2611957 | None:intergenic |
| TCGGTTGGTCATGGCGTCCA+CGG | 0.546920 | 5.4:+2608584 | MS.gene024815:CDS |
| TATCGCTCGAAGGATTTGGC+AGG | 0.548320 | 5.4:+2611083 | MS.gene024815:CDS |
| AAGTAGAGGTCTACGCGTCT+GGG | 0.548459 | 5.4:-2611520 | None:intergenic |
| CTTAGGTGGGACTGTTGCTG+TGG | 0.550839 | 5.4:+2611996 | MS.gene024815:CDS |
| GCTCGCACACTGCAAAGTGT+TGG | 0.555461 | 5.4:+2610906 | MS.gene024815:CDS |
| AAGAAATCCCTCACTAACTC+AGG | 0.556254 | 5.4:-2610847 | None:intergenic |
| ACTTTGCAGTGTGCGAGCAT+AGG | 0.560803 | 5.4:-2610901 | None:intergenic |
| TCAGAACACGAATTGGAAGA+AGG | 0.560879 | 5.4:-2608775 | None:intergenic |
| ACGCTACCAAACACGCTGCT+CGG | 0.561108 | 5.4:+2608809 | MS.gene024815:CDS |
| AGGAGTTCGCCATGGAATGT+GGG | 0.565387 | 5.4:+2611753 | MS.gene024815:CDS |
| CACGCCGTGACCAATCTGCC+GGG | 0.572316 | 5.4:-2611956 | None:intergenic |
| CACAGCAACAGTCCCACCTA+AGG | 0.583165 | 5.4:-2611995 | None:intergenic |
| CAATTGATGTCCCATTATGA+GGG | 0.583701 | 5.4:-2610936 | None:intergenic |
| AATGCCCGGCAGATTGGTCA+CGG | 0.585401 | 5.4:+2611952 | MS.gene024815:CDS |
| TGCGTCTTTGATGGAAGAGA+GGG | 0.591648 | 5.4:+2611915 | MS.gene024815:CDS |
| ATGCAACTCCTGAGTTAGTG+AGG | 0.591962 | 5.4:+2610839 | MS.gene024815:CDS |
| AGCGTGTTTGGTAGCGTCGG+TGG | 0.595717 | 5.4:-2608803 | None:intergenic |
| CTTCAAATACAGTTCTACTA+CGG | 0.596069 | 5.4:-2610816 | None:intergenic |
| TGGGCAGTTGTCTGCATGCG+AGG | 0.601567 | 5.4:+2611678 | MS.gene024815:CDS |
| AAGACCGATGAAGAGAAGTC+CGG | 0.606267 | 5.4:-2608611 | None:intergenic |
| CGGTGAACGCTAACCAGAGA+CGG | 0.606502 | 5.4:-2608684 | None:intergenic |
| AGCAGCGTGTTTGGTAGCGT+CGG | 0.608295 | 5.4:-2608806 | None:intergenic |
| ATGCGTCTTTGATGGAAGAG+AGG | 0.608772 | 5.4:+2611914 | MS.gene024815:CDS |
| TGCATACTACTGTGTGACAA+AGG | 0.612553 | 5.4:+2611113 | MS.gene024815:CDS |
| CGGCGTGGATTGGAAGTGGG+TGG | 0.613955 | 5.4:+2611972 | MS.gene024815:CDS |
| AATAGAGAAAGCAGAAAGAG+CGG | 0.618635 | 5.4:-2608704 | None:intergenic |
| TGGACCGGACTTCTCTTCAT+CGG | 0.622743 | 5.4:+2608607 | MS.gene024815:CDS |
| TCTCTCGTCAGCCATATCAC+CGG | 0.623742 | 5.4:-2610360 | None:intergenic |
| TGCAACTCCTGAGTTAGTGA+GGG | 0.625852 | 5.4:+2610840 | MS.gene024815:CDS |
| GAGCAGGGCATAGATTTGCA+CGG | 0.635579 | 5.4:+2612064 | MS.gene024815:CDS |
| TTACCCAACTAGAAAAGTAG+AGG | 0.644640 | 5.4:-2611534 | None:intergenic |
| GTATTCACAGTGGTGCAGTA+GGG | 0.646375 | 5.4:+2612025 | MS.gene024815:CDS |
| GCTGTCAAGAAATTGCACTC+TGG | 0.647856 | 5.4:+2611778 | MS.gene024815:CDS |
| GGAGTTCGCCATGGAATGTG+GGG | 0.655861 | 5.4:+2611754 | MS.gene024815:CDS |
| GGGAATATATTATCGCTCGA+AGG | 0.662198 | 5.4:+2611073 | MS.gene024815:CDS |
| CCGGCAGATTGGTCACGGCG+TGG | 0.663135 | 5.4:+2611957 | MS.gene024815:CDS |
| TATGGCTGACGAGAGAGACA+AGG | 0.666989 | 5.4:+2610367 | MS.gene024815:CDS |
| TGATGGCAAGTAAAACAACC+AGG | 0.673260 | 5.4:+2611857 | MS.gene024815:CDS |
| AGCTTGGCGTTATGACTCTG+AGG | 0.673296 | 5.4:+2610502 | MS.gene024815:CDS |
| GCAAAGTTAGGAGTTCGCCA+TGG | 0.689467 | 5.4:+2611745 | MS.gene024815:CDS |
| GTTGGTCATGGCGTCCACGG+TGG | 0.693217 | 5.4:+2608587 | MS.gene024815:CDS |
| GATGCAGTGGAATCTCGCAA+AGG | 0.695128 | 5.4:+2611652 | MS.gene024815:intron |
| AAGAGAAGTCCGGTCCACCG+TGG | 0.715281 | 5.4:-2608601 | None:intergenic |
| CGGCGAGCACCGAATCCCGG+CGG | 0.734938 | 5.4:-2608664 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATTATATATAATGTATT+AGG | + | chr5.4:2608904-2608923 | MS.gene024815:intron | 10.0% |
| !! | ACAAAAAGAAATATAAGAAA+CGG | - | chr5.4:2611352-2611371 | None:intergenic | 15.0% |
| !! | TACAACATTAACTATTTATT+TGG | - | chr5.4:2610988-2611007 | None:intergenic | 15.0% |
| !! | AAAAAGAAATATAAGAAACG+GGG | - | chr5.4:2611350-2611369 | None:intergenic | 20.0% |
| !! | AGGTTTATGAAAAATTAGAT+TGG | - | chr5.4:2611377-2611396 | None:intergenic | 20.0% |
| !! | AGTATTATAACAACATAGAT+TGG | - | chr5.4:2609886-2609905 | None:intergenic | 20.0% |
| !! | ATTTAATCTTCAATGTTGTA+GGG | + | chr5.4:2611463-2611482 | MS.gene024815:intron | 20.0% |
| !! | CAAAAAGAAATATAAGAAAC+GGG | - | chr5.4:2611351-2611370 | None:intergenic | 20.0% |
| !! | TAGCATCAACTATTTAATAA+TGG | + | chr5.4:2611602-2611621 | MS.gene024815:intron | 20.0% |
| !! | TATTTAATCTTCAATGTTGT+AGG | + | chr5.4:2611462-2611481 | MS.gene024815:intron | 20.0% |
| !! | TTAAATAGTAAACAACCTTA+CGG | - | chr5.4:2611449-2611468 | None:intergenic | 20.0% |
| !! | TTGGTCTAATTTCAAAAATA+AGG | + | chr5.4:2608738-2608757 | MS.gene024815:CDS | 20.0% |
| !!! | AGACTATTAACTAATTTTGT+TGG | + | chr5.4:2609342-2609361 | MS.gene024815:intron | 20.0% |
| !!! | ATATTATACTGTATTTCTAG+CGG | + | chr5.4:2610283-2610302 | MS.gene024815:intron | 20.0% |
| !!! | GACTATTAACTAATTTTGTT+GGG | + | chr5.4:2609343-2609362 | MS.gene024815:intron | 20.0% |
| !!! | GTAATTCACTATCATTTTTT+TGG | + | chr5.4:2608831-2608850 | MS.gene024815:intron | 20.0% |
| !!! | TATACTTTTTCAGCATTTTT+AGG | + | chr5.4:2608963-2608982 | MS.gene024815:intron | 20.0% |
| !!! | TTTTTATTTAGCTACCTTTT+AGG | + | chr5.4:2609408-2609427 | MS.gene024815:intron | 20.0% |
| ! | AAAACACTCTTTCAAAAATG+TGG | - | chr5.4:2609508-2609527 | None:intergenic | 25.0% |
| ! | AATAAAAAATGAGATGTGTG+AGG | - | chr5.4:2609396-2609415 | None:intergenic | 25.0% |
| ! | AATTGTTCACTGGATTAAAA+AGG | + | chr5.4:2610954-2610973 | MS.gene024815:CDS | 25.0% |
| ! | ACATAAATCCACTTTAAACT+AGG | - | chr5.4:2610653-2610672 | None:intergenic | 25.0% |
| ! | GGATTATTTATTCGATGTTA+TGG | + | chr5.4:2608468-2608487 | MS.gene024815:CDS | 25.0% |
| ! | TATGAAGAAACCTTCAATAA+CGG | + | chr5.4:2608495-2608514 | MS.gene024815:CDS | 25.0% |
| ! | TGATACAAAATACCCTAATT+TGG | + | chr5.4:2609790-2609809 | MS.gene024815:intron | 25.0% |
| ! | TTTAATCTTCAATGTTGTAG+GGG | + | chr5.4:2611464-2611483 | MS.gene024815:intron | 25.0% |
| !! | AGCTTCTTTTTATTGTATGA+TGG | + | chr5.4:2610175-2610194 | MS.gene024815:intron | 25.0% |
| !! | GTAGTTATGATTTTTCTACT+TGG | + | chr5.4:2610070-2610089 | MS.gene024815:intron | 25.0% |
| !! | TAACTAATTTTGTTGGGTTA+AGG | + | chr5.4:2609349-2609368 | MS.gene024815:intron | 25.0% |
| !! | TTTTACTTCCTAGTTTAAAG+TGG | + | chr5.4:2610642-2610661 | MS.gene024815:intron | 25.0% |
| !!! | ATGAAGCGTTTTATTCATTT+TGG | + | chr5.4:2610310-2610329 | MS.gene024815:intron | 25.0% |
| !!! | GTTTTATTCATTTTGGAACT+TGG | + | chr5.4:2610317-2610336 | MS.gene024815:intron | 25.0% |
| !!! | TGTTTAATTTTCATCTTGTG+CGG | + | chr5.4:2610535-2610554 | MS.gene024815:intron | 25.0% |
| AACAGCTATAGTAGAAAAGA+TGG | + | chr5.4:2609070-2609089 | MS.gene024815:intron | 30.0% | |
| AAGGAACTCAAACATTGTAT+TGG | - | chr5.4:2609636-2609655 | None:intergenic | 30.0% | |
| AATAAATCAGCATCTGATCT+TGG | + | chr5.4:2610764-2610783 | MS.gene024815:intron | 30.0% | |
| AATATATCAAACAACCATCC+AGG | - | chr5.4:2610268-2610287 | None:intergenic | 30.0% | |
| AATCAAACCTGGTAAGAAAT+AGG | + | chr5.4:2611555-2611574 | MS.gene024815:intron | 30.0% | |
| AATTGATGTTCCTATGTAAG+TGG | + | chr5.4:2610230-2610249 | MS.gene024815:intron | 30.0% | |
| AGAAAATCCTGTTAATCTGA+AGG | + | chr5.4:2611231-2611250 | MS.gene024815:intron | 30.0% | |
| ATCTTCTTCATCTTCTTGAA+GGG | + | chr5.4:2610417-2610436 | MS.gene024815:CDS | 30.0% | |
| ATTAGACACACTGAAGAAAT+TGG | - | chr5.4:2610136-2610155 | None:intergenic | 30.0% | |
| CAAATATGCAATACAAAGCT+TGG | + | chr5.4:2610486-2610505 | MS.gene024815:CDS | 30.0% | |
| CTCAAAAATTGTATCACAAC+TGG | + | chr5.4:2609818-2609837 | MS.gene024815:intron | 30.0% | |
| CTTCAAATACAGTTCTACTA+CGG | - | chr5.4:2610819-2610838 | None:intergenic | 30.0% | |
| GATTATACAATGTAACCGTA+AGG | + | chr5.4:2611431-2611450 | MS.gene024815:intron | 30.0% | |
| GTATTTAATGTACACTGACA+TGG | + | chr5.4:2611005-2611024 | MS.gene024815:intron | 30.0% | |
| TACAAAATACCCTAATTTGG+AGG | + | chr5.4:2609793-2609812 | MS.gene024815:intron | 30.0% | |
| TAGAAAAGATGGTAGAAACT+AGG | + | chr5.4:2609081-2609100 | MS.gene024815:intron | 30.0% | |
| TGATCTAGAGATTAATGAGT+TGG | + | chr5.4:2609237-2609256 | MS.gene024815:intron | 30.0% | |
| TTAATCTTCAATGTTGTAGG+GGG | + | chr5.4:2611465-2611484 | MS.gene024815:intron | 30.0% | |
| TTATCTCGTTTCTTTCTCAA+TGG | + | chr5.4:2611180-2611199 | MS.gene024815:intron | 30.0% | |
| TTGGTTATTGCACATACATT+AGG | + | chr5.4:2610336-2610355 | MS.gene024815:intron | 30.0% | |
| ! | AGTAAAGAGAGTTGATCAAA+TGG | + | chr5.4:2609148-2609167 | MS.gene024815:intron | 30.0% |
| ! | CAAGCTTTGTATTGCATATT+TGG | - | chr5.4:2610488-2610507 | None:intergenic | 30.0% |
| ! | GGTTTTCTACATGTATGAAT+TGG | + | chr5.4:2609309-2609328 | MS.gene024815:intron | 30.0% |
| ! | TATCACAACTGGATTTTGAA+GGG | + | chr5.4:2609829-2609848 | MS.gene024815:intron | 30.0% |
| !! | TAAAAGTGCCTCAAATAGAA+AGG | - | chr5.4:2610627-2610646 | None:intergenic | 30.0% |
| !! | TGTGTAGTATTGATATGTGA+TGG | + | chr5.4:2608929-2608948 | MS.gene024815:intron | 30.0% |
| !! | TTTTCAGCATTTTTAGGAAC+TGG | + | chr5.4:2608969-2608988 | MS.gene024815:intron | 30.0% |
| !!! | TTTTGAGTTCCTCCAAATTA+GGG | - | chr5.4:2609805-2609824 | None:intergenic | 30.0% |
| !!! | TTTTTGAGTTCCTCCAAATT+AGG | - | chr5.4:2609806-2609825 | None:intergenic | 30.0% |
| AATAGAGAAAGCAGAAAGAG+CGG | - | chr5.4:2608707-2608726 | None:intergenic | 35.0% | |
| ACAATTGATGTCCCATTATG+AGG | - | chr5.4:2610940-2610959 | None:intergenic | 35.0% | |
| ACGAATGTTTCCGTTATTGA+AGG | - | chr5.4:2608508-2608527 | None:intergenic | 35.0% | |
| ACTCTCAAACAAAGCCTAAA+AGG | - | chr5.4:2609425-2609444 | None:intergenic | 35.0% | |
| AGATCCTACACATAGAATCA+CGG | - | chr5.4:2610109-2610128 | None:intergenic | 35.0% | |
| ATATGTGTGGCAAGATTAGA+TGG | + | chr5.4:2608995-2609014 | MS.gene024815:intron | 35.0% | |
| ATATTATCGCTCGAAGGATT+TGG | + | chr5.4:2611079-2611098 | MS.gene024815:CDS | 35.0% | |
| CAAGTTTCGTTTCTTATGGA+CGG | + | chr5.4:2608639-2608658 | MS.gene024815:CDS | 35.0% | |
| CAATTGATGTCCCATTATGA+GGG | - | chr5.4:2610939-2610958 | None:intergenic | 35.0% | |
| CATCTTCTTCATCTTCTTGA+AGG | + | chr5.4:2610416-2610435 | MS.gene024815:CDS | 35.0% | |
| CCAAAAGATGTTGCAAAGTT+AGG | + | chr5.4:2611733-2611752 | MS.gene024815:CDS | 35.0% | |
| CTCTTTACTACAGAATCTAG+AGG | - | chr5.4:2609137-2609156 | None:intergenic | 35.0% | |
| TATGTGTGGCAAGATTAGAT+GGG | + | chr5.4:2608996-2609015 | MS.gene024815:intron | 35.0% | |
| TATTGCACATACATTAGGTC+CGG | + | chr5.4:2610341-2610360 | MS.gene024815:intron | 35.0% | |
| TCTCTATTTGTCGCAGATAT+TGG | + | chr5.4:2608719-2608738 | MS.gene024815:CDS | 35.0% | |
| TTACCCAACTAGAAAAGTAG+AGG | - | chr5.4:2611537-2611556 | None:intergenic | 35.0% | |
| TTCCATATTTGACACCCAAA+AGG | + | chr5.4:2610685-2610704 | MS.gene024815:intron | 35.0% | |
| TTGGACATCCTTTCTATTTG+AGG | + | chr5.4:2610616-2610635 | MS.gene024815:intron | 35.0% | |
| ! | AACTTTGCCTATTTCTTACC+AGG | - | chr5.4:2611565-2611584 | None:intergenic | 35.0% |
| ! | ATGATGATTTTCGTCCCAAA+TGG | + | chr5.4:2610875-2610894 | MS.gene024815:CDS | 35.0% |
| ! | CAAAAATAAGGAGAAAGTGC+TGG | + | chr5.4:2608750-2608769 | MS.gene024815:CDS | 35.0% |
| ! | CCTAACTTTGCAACATCTTT+TGG | - | chr5.4:2611736-2611755 | None:intergenic | 35.0% |
| ! | CTTTGTTTGAGAGTTTGAAG+GGG | + | chr5.4:2609431-2609450 | MS.gene024815:intron | 35.0% |
| ! | GACTATGTAATGAGCCTTTT+GGG | - | chr5.4:2610702-2610721 | None:intergenic | 35.0% |
| ! | GATTGACTGGCAAAGTTTTA+TGG | + | chr5.4:2610451-2610470 | MS.gene024815:CDS | 35.0% |
| ! | GTATCACAACTGGATTTTGA+AGG | + | chr5.4:2609828-2609847 | MS.gene024815:intron | 35.0% |
| ! | GTTTGAGTTCCTTCAAAGTA+GGG | + | chr5.4:2609643-2609662 | MS.gene024815:intron | 35.0% |
| ! | TAATGAGTTGGAGAAAGACA+TGG | + | chr5.4:2609249-2609268 | MS.gene024815:intron | 35.0% |
| ! | TAGGAACTGGTTTATATGTG+TGG | + | chr5.4:2608982-2609001 | MS.gene024815:intron | 35.0% |
| ! | TGACTATGTAATGAGCCTTT+TGG | - | chr5.4:2610703-2610722 | None:intergenic | 35.0% |
| ! | TGATGATTTTCGTCCCAAAT+GGG | + | chr5.4:2610876-2610895 | MS.gene024815:CDS | 35.0% |
| ! | TGTTTGAGTTCCTTCAAAGT+AGG | + | chr5.4:2609642-2609661 | MS.gene024815:intron | 35.0% |
| ! | TTTGAGTTCCTTCAAAGTAG+GGG | + | chr5.4:2609644-2609663 | MS.gene024815:intron | 35.0% |
| ! | TTTTCTGACATCACATACAC+AGG | - | chr5.4:2611397-2611416 | None:intergenic | 35.0% |
| !! | ACTGGCAAAGTTTTATGGAA+AGG | + | chr5.4:2610456-2610475 | MS.gene024815:CDS | 35.0% |
| !! | CTTTTCTAGTGACAGAAGAA+TGG | - | chr5.4:2611213-2611232 | None:intergenic | 35.0% |
| !! | GCTTTGTTTGAGAGTTTGAA+GGG | + | chr5.4:2609430-2609449 | MS.gene024815:intron | 35.0% |
| !! | TAGACCTCTACTTTTCTAGT+TGG | + | chr5.4:2611530-2611549 | MS.gene024815:CDS | 35.0% |
| !!! | AGACCTCTACTTTTCTAGTT+GGG | + | chr5.4:2611531-2611550 | MS.gene024815:CDS | 35.0% |
| !!! | TGCTTCTTCCTTTTTTGAGA+GGG | + | chr5.4:2609738-2609757 | MS.gene024815:intron | 35.0% |
| AAGAAATCCCTCACTAACTC+AGG | - | chr5.4:2610850-2610869 | None:intergenic | 40.0% | |
| ACAACCAGGCTTTCTTCTAA+TGG | + | chr5.4:2611871-2611890 | MS.gene024815:CDS | 40.0% | |
| ACATTAGAGAGAGAGAGAGT+TGG | + | chr5.4:2609044-2609063 | MS.gene024815:intron | 40.0% | |
| AGAGTCAAATCACTAGAGGT+AGG | + | chr5.4:2609174-2609193 | MS.gene024815:intron | 40.0% | |
| AGGAATAGAAGACTTCGGAA+TGG | - | chr5.4:2609712-2609731 | None:intergenic | 40.0% | |
| AGTCAAATCACTAGAGGTAG+GGG | + | chr5.4:2609176-2609195 | MS.gene024815:intron | 40.0% | |
| AGTTAGTGAGGGATTTCTTC+TGG | + | chr5.4:2610851-2610870 | MS.gene024815:CDS | 40.0% | |
| ATACATTAGGTCCGGTGATA+TGG | + | chr5.4:2610349-2610368 | MS.gene024815:intron | 40.0% | |
| ATGGGACATCAATTGTTCAC+TGG | + | chr5.4:2610944-2610963 | MS.gene024815:CDS | 40.0% | |
| ATTAGAGAGAGAGAGAGTTG+GGG | + | chr5.4:2609046-2609065 | MS.gene024815:intron | 40.0% | |
| CATCTTCTTGAAGGGAAAGA+TGG | + | chr5.4:2610425-2610444 | MS.gene024815:CDS | 40.0% | |
| CATGTCTTCGTGATGCAAAA+GGG | - | chr5.4:2611707-2611726 | None:intergenic | 40.0% | |
| CATTAGAGAGAGAGAGAGTT+GGG | + | chr5.4:2609045-2609064 | MS.gene024815:intron | 40.0% | |
| CTACAGAAAAAGGGGAACTA+TGG | - | chr5.4:2611048-2611067 | None:intergenic | 40.0% | |
| CTAGAAGTGACCACTTACAT+AGG | - | chr5.4:2610243-2610262 | None:intergenic | 40.0% | |
| CTCTCAAAAAAGGAAGAAGC+AGG | - | chr5.4:2609739-2609758 | None:intergenic | 40.0% | |
| GAGATTCCACTGCATCAATT+TGG | - | chr5.4:2611648-2611667 | None:intergenic | 40.0% | |
| GAGTCAAATCACTAGAGGTA+GGG | + | chr5.4:2609175-2609194 | MS.gene024815:intron | 40.0% | |
| GATGAGAGTCAAATCACTAG+AGG | + | chr5.4:2609170-2609189 | MS.gene024815:intron | 40.0% | |
| GGAATAGAAGACTTCGGAAT+GGG | - | chr5.4:2609711-2609730 | None:intergenic | 40.0% | |
| GGAGCAAGTTTCGTTTCTTA+TGG | + | chr5.4:2608635-2608654 | MS.gene024815:CDS | 40.0% | |
| GGGAATATATTATCGCTCGA+AGG | + | chr5.4:2611073-2611092 | MS.gene024815:CDS | 40.0% | |
| GTGACGTTGTTCGATATAAC+TGG | + | chr5.4:2609288-2609307 | MS.gene024815:intron | 40.0% | |
| GTGGAAGGAATAGAAGACTT+CGG | - | chr5.4:2609717-2609736 | None:intergenic | 40.0% | |
| GTTAGTGAGGGATTTCTTCT+GGG | + | chr5.4:2610852-2610871 | MS.gene024815:CDS | 40.0% | |
| GTTAGTGCCTTCAGATTAAC+AGG | - | chr5.4:2611241-2611260 | None:intergenic | 40.0% | |
| GTTTCCATTAGAAGAAAGCC+TGG | - | chr5.4:2611878-2611897 | None:intergenic | 40.0% | |
| TCAAAAAAGGAAGAAGCAGG+TGG | - | chr5.4:2609736-2609755 | None:intergenic | 40.0% | |
| TCAAAATCCCCCTACTTTGA+AGG | - | chr5.4:2609655-2609674 | None:intergenic | 40.0% | |
| TCAGAACACGAATTGGAAGA+AGG | - | chr5.4:2608778-2608797 | None:intergenic | 40.0% | |
| TCCAAATCAGCTTCTGTAAC+TGG | - | chr5.4:2610395-2610414 | None:intergenic | 40.0% | |
| TCCAGTTACAGAAGCTGATT+TGG | + | chr5.4:2610391-2610410 | MS.gene024815:CDS | 40.0% | |
| TCCCGATCACTACAGAAAAA+GGG | - | chr5.4:2611057-2611076 | None:intergenic | 40.0% | |
| TCTAGTTGGGTAATCAAACC+TGG | + | chr5.4:2611544-2611563 | MS.gene024815:CDS | 40.0% | |
| TGATGGCAAGTAAAACAACC+AGG | + | chr5.4:2611857-2611876 | MS.gene024815:CDS | 40.0% | |
| TGCATACTACTGTGTGACAA+AGG | + | chr5.4:2611113-2611132 | MS.gene024815:CDS | 40.0% | |
| TGCGGATATTGTCTGTAATC+TGG | + | chr5.4:2610553-2610572 | MS.gene024815:intron | 40.0% | |
| TGGAAACTTGCATTCGTTAG+AGG | + | chr5.4:2611891-2611910 | MS.gene024815:CDS | 40.0% | |
| TTCCCGATCACTACAGAAAA+AGG | - | chr5.4:2611058-2611077 | None:intergenic | 40.0% | |
| TTCTAGTGACAGAAGAATGG+AGG | - | chr5.4:2611210-2611229 | None:intergenic | 40.0% | |
| TTGAGTTCCTTCAAAGTAGG+GGG | + | chr5.4:2609645-2609664 | MS.gene024815:intron | 40.0% | |
| TTTGTCGAGATGTGCATTGA+TGG | + | chr5.4:2611840-2611859 | MS.gene024815:CDS | 40.0% | |
| ! | CATCTGTTTTCCTAGCATTC+TGG | - | chr5.4:2611816-2611835 | None:intergenic | 40.0% |
| ! | CTTGGAGCTTTTAACAGACA+GGG | + | chr5.4:2610782-2610801 | MS.gene024815:intron | 40.0% |
| ! | CTTTTGCATCACGAAGACAT+GGG | + | chr5.4:2611706-2611725 | MS.gene024815:CDS | 40.0% |
| ! | TCCCCTTTTTCTGTAGTGAT+CGG | + | chr5.4:2611052-2611071 | MS.gene024815:CDS | 40.0% |
| ! | TCTTGGAGCTTTTAACAGAC+AGG | + | chr5.4:2610781-2610800 | MS.gene024815:intron | 40.0% |
| ! | TTGGAGCTTTTAACAGACAG+GGG | + | chr5.4:2610783-2610802 | MS.gene024815:intron | 40.0% |
| ! | TTTTGCATCACGAAGACATG+GGG | + | chr5.4:2611707-2611726 | MS.gene024815:CDS | 40.0% |
| !! | AGCCTTTTGGGTGTCAAATA+TGG | - | chr5.4:2610690-2610709 | None:intergenic | 40.0% |
| !! | CGTCGATATTTTGCTATGTG+CGG | + | chr5.4:2608525-2608544 | MS.gene024815:CDS | 40.0% |
| !! | CGTTTTGGCAAACTTGGATA+GGG | - | chr5.4:2611493-2611512 | None:intergenic | 40.0% |
| !! | GATTTTGAAGGGTTTTCGTG+TGG | + | chr5.4:2609840-2609859 | MS.gene024815:intron | 40.0% |
| !! | GGCTTTGTTTGAGAGTTTGA+AGG | + | chr5.4:2609429-2609448 | MS.gene024815:intron | 40.0% |
| !! | TTATCGCGTTTTGGCAAACT+TGG | - | chr5.4:2611499-2611518 | None:intergenic | 40.0% |
| !!! | CTGCTTCTTCCTTTTTTGAG+AGG | + | chr5.4:2609737-2609756 | MS.gene024815:intron | 40.0% |
| !!! | CTTCCTTTTTTGAGAGGGAA+GGG | + | chr5.4:2609743-2609762 | MS.gene024815:intron | 40.0% |
| !!! | TCTTCCTTTTTTGAGAGGGA+AGG | + | chr5.4:2609742-2609761 | MS.gene024815:intron | 40.0% |
| AAAAGGAAGAAGCAGGTGGA+AGG | - | chr5.4:2609732-2609751 | None:intergenic | 45.0% | |
| AAGACCGATGAAGAGAAGTC+CGG | - | chr5.4:2608614-2608633 | None:intergenic | 45.0% | |
| AAGCCCTTCCCTCTCAAAAA+AGG | - | chr5.4:2609749-2609768 | None:intergenic | 45.0% | |
| AATGCTGCAACCATGCTCTA+AGG | - | chr5.4:2610038-2610057 | None:intergenic | 45.0% | |
| AGTGTGCCAAATTGATGCAG+TGG | + | chr5.4:2611639-2611658 | MS.gene024815:intron | 45.0% | |
| AGTTTGGAGGGGAGATTAGA+GGG | - | chr5.4:2610004-2610023 | None:intergenic | 45.0% | |
| ATAGAAGACTTCGGAATGGG+AGG | - | chr5.4:2609708-2609727 | None:intergenic | 45.0% | |
| ATCATGACCGCAAGCCAAAT+CGG | - | chr5.4:2608553-2608572 | None:intergenic | 45.0% | |
| ATGCAACTCCTGAGTTAGTG+AGG | + | chr5.4:2610839-2610858 | MS.gene024815:CDS | 45.0% | |
| ATGCGTCTTTGATGGAAGAG+AGG | + | chr5.4:2611914-2611933 | MS.gene024815:CDS | 45.0% | |
| CCATGTCTTCGTGATGCAAA+AGG | - | chr5.4:2611708-2611727 | None:intergenic | 45.0% | |
| CCCGATCACTACAGAAAAAG+GGG | - | chr5.4:2611056-2611075 | None:intergenic | 45.0% | |
| GACTTCTCTTCATCGGTCTT+CGG | + | chr5.4:2608614-2608633 | MS.gene024815:CDS | 45.0% | |
| GCAAGATTAGATGGGTCATG+GGG | + | chr5.4:2609004-2609023 | MS.gene024815:intron | 45.0% | |
| GCTGTCAAGAAATTGCACTC+TGG | + | chr5.4:2611778-2611797 | MS.gene024815:CDS | 45.0% | |
| GGAAAGATGGAGAGATTGAC+TGG | + | chr5.4:2610438-2610457 | MS.gene024815:CDS | 45.0% | |
| GGCAAGATTAGATGGGTCAT+GGG | + | chr5.4:2609003-2609022 | MS.gene024815:intron | 45.0% | |
| GTATTCACAGTGGTGCAGTA+GGG | + | chr5.4:2612025-2612044 | MS.gene024815:CDS | 45.0% | |
| GTTAGAGGATGCGTCTTTGA+TGG | + | chr5.4:2611906-2611925 | MS.gene024815:CDS | 45.0% | |
| GTTTGAGAGTTTGAAGGGGA+GGG | + | chr5.4:2609435-2609454 | MS.gene024815:intron | 45.0% | |
| TAGAAGACTTCGGAATGGGA+GGG | - | chr5.4:2609707-2609726 | None:intergenic | 45.0% | |
| TGCAACTCCTGAGTTAGTGA+GGG | + | chr5.4:2610840-2610859 | MS.gene024815:CDS | 45.0% | |
| TGCGTCTTTGATGGAAGAGA+GGG | + | chr5.4:2611915-2611934 | MS.gene024815:CDS | 45.0% | |
| TGGAATCTCGCAAAGGAGAT+GGG | + | chr5.4:2611659-2611678 | MS.gene024815:CDS | 45.0% | |
| TGGAGGAATGCCCTCATAAT+GGG | + | chr5.4:2610926-2610945 | MS.gene024815:CDS | 45.0% | |
| TGGCAAGATTAGATGGGTCA+TGG | + | chr5.4:2609002-2609021 | MS.gene024815:intron | 45.0% | |
| TGGTAGAAACTAGGCTCATG+TGG | + | chr5.4:2609090-2609109 | MS.gene024815:intron | 45.0% | |
| TGTTTGAGAGTTTGAAGGGG+AGG | + | chr5.4:2609434-2609453 | MS.gene024815:intron | 45.0% | |
| TTCGCCGTGATTCTATGTGT+AGG | + | chr5.4:2610102-2610121 | MS.gene024815:intron | 45.0% | |
| TTGGAGGAATGCCCTCATAA+TGG | + | chr5.4:2610925-2610944 | MS.gene024815:CDS | 45.0% | |
| ! | CCCCTTTTTCTGTAGTGATC+GGG | + | chr5.4:2611053-2611072 | MS.gene024815:CDS | 45.0% |
| ! | CCTTTTGCATCACGAAGACA+TGG | + | chr5.4:2611705-2611724 | MS.gene024815:CDS | 45.0% |
| ! | TGAGAGCATACCAGAATGCT+AGG | + | chr5.4:2611803-2611822 | MS.gene024815:CDS | 45.0% |
| !! | AAGTGGTCACTTCTAGTTCC+TGG | + | chr5.4:2610247-2610266 | MS.gene024815:intron | 45.0% |
| !! | ATTTGGCTTGCGGTCATGAT+CGG | + | chr5.4:2608553-2608572 | MS.gene024815:CDS | 45.0% |
| !! | CATGCTCTAAGGCTTGGTTT+GGG | - | chr5.4:2610027-2610046 | None:intergenic | 45.0% |
| !! | GCGTTTTGGCAAACTTGGAT+AGG | - | chr5.4:2611494-2611513 | None:intergenic | 45.0% |
| !! | GTCATGATCGGTTTGGTGAT+CGG | + | chr5.4:2608565-2608584 | MS.gene024815:CDS | 45.0% |
| !! | TAAGGCTTGGTTTGGGAGTT+TGG | - | chr5.4:2610020-2610039 | None:intergenic | 45.0% |
| !! | TTTTGAGAGGGAAGGGCTTT+GGG | + | chr5.4:2609750-2609769 | MS.gene024815:intron | 45.0% |
| !! | TTTTTGAGAGGGAAGGGCTT+TGG | + | chr5.4:2609749-2609768 | MS.gene024815:intron | 45.0% |
| !!! | GTGGTTTTGGGTATTCACAG+TGG | + | chr5.4:2612015-2612034 | MS.gene024815:CDS | 45.0% |
| !!! | TACAAAATAAATAATTTTTT+TGG | + | chr5.4:2610597-2610616 | MS.gene024815:intron | 5.0% |
| AAAGTAGAGGTCTACGCGTC+TGG | - | chr5.4:2611524-2611543 | None:intergenic | 50.0% | |
| AAGTAGAGGTCTACGCGTCT+GGG | - | chr5.4:2611523-2611542 | None:intergenic | 50.0% | |
| ACTTTGCAGTGTGCGAGCAT+AGG | - | chr5.4:2610904-2610923 | None:intergenic | 50.0% | |
| AGCAAGCCATCAACAATGCC+CGG | + | chr5.4:2611938-2611957 | MS.gene024815:CDS | 50.0% | |
| AGCTTGGCGTTATGACTCTG+AGG | + | chr5.4:2610502-2610521 | MS.gene024815:CDS | 50.0% | |
| AGGAGTTCGCCATGGAATGT+GGG | + | chr5.4:2611753-2611772 | MS.gene024815:CDS | 50.0% | |
| ATCAACAATGCCCGGCAGAT+TGG | + | chr5.4:2611946-2611965 | MS.gene024815:CDS | 50.0% | |
| CCAAACCAAGCCTTAGAGCA+TGG | + | chr5.4:2610025-2610044 | MS.gene024815:intron | 50.0% | |
| GAATTACCGAGCAGCGTGTT+TGG | - | chr5.4:2608818-2608837 | None:intergenic | 50.0% | |
| GAGCAGGGCATAGATTTGCA+CGG | + | chr5.4:2612064-2612083 | MS.gene024815:CDS | 50.0% | |
| GAGTTTGGAGGGGAGATTAG+AGG | - | chr5.4:2610005-2610024 | None:intergenic | 50.0% | |
| GATGCAGTGGAATCTCGCAA+AGG | + | chr5.4:2611652-2611671 | MS.gene024815:intron | 50.0% | |
| GCAAAGTTAGGAGTTCGCCA+TGG | + | chr5.4:2611745-2611764 | MS.gene024815:CDS | 50.0% | |
| GCGAGCATAGGATCCCATTT+GGG | - | chr5.4:2610892-2610911 | None:intergenic | 50.0% | |
| GGCGTCATCAGAACACGAAT+TGG | - | chr5.4:2608785-2608804 | None:intergenic | 50.0% | |
| GGTATTCACAGTGGTGCAGT+AGG | + | chr5.4:2612024-2612043 | MS.gene024815:CDS | 50.0% | |
| GTGGAATCTCGCAAAGGAGA+TGG | + | chr5.4:2611658-2611677 | MS.gene024815:intron | 50.0% | |
| GTTTGGAGGGGAGATTAGAG+GGG | - | chr5.4:2610003-2610022 | None:intergenic | 50.0% | |
| TAGGAGTTCGCCATGGAATG+TGG | + | chr5.4:2611752-2611771 | MS.gene024815:CDS | 50.0% | |
| TATCGCTCGAAGGATTTGGC+AGG | + | chr5.4:2611083-2611102 | MS.gene024815:CDS | 50.0% | |
| TATGGCTGACGAGAGAGACA+AGG | + | chr5.4:2610367-2610386 | MS.gene024815:CDS | 50.0% | |
| TCTCTCGTCAGCCATATCAC+CGG | - | chr5.4:2610363-2610382 | None:intergenic | 50.0% | |
| TGCGAGCATAGGATCCCATT+TGG | - | chr5.4:2610893-2610912 | None:intergenic | 50.0% | |
| TGCTATGTGCGGTTCCGATT+TGG | + | chr5.4:2608536-2608555 | MS.gene024815:CDS | 50.0% | |
| TGGACCGGACTTCTCTTCAT+CGG | + | chr5.4:2608607-2608626 | MS.gene024815:CDS | 50.0% | |
| TTTCTTATGGACGGTTCCGC+CGG | + | chr5.4:2608648-2608667 | MS.gene024815:CDS | 50.0% | |
| TTTGAGAGGGAAGGGCTTTG+GGG | + | chr5.4:2609751-2609770 | MS.gene024815:intron | 50.0% | |
| ! | AATCTGCCGGGCATTGTTGA+TGG | - | chr5.4:2611947-2611966 | None:intergenic | 50.0% |
| ! | AGTAGGGCGAGCATTGTTGT+TGG | + | chr5.4:2612041-2612060 | MS.gene024815:CDS | 50.0% |
| ! | GAGCATTGTTGTTGGGAGCA+GGG | + | chr5.4:2612049-2612068 | MS.gene024815:CDS | 50.0% |
| ! | GGGACTGTTGCTGTGGTTTT+GGG | + | chr5.4:2612003-2612022 | MS.gene024815:CDS | 50.0% |
| ! | GTAGGGCGAGCATTGTTGTT+GGG | + | chr5.4:2612042-2612061 | MS.gene024815:CDS | 50.0% |
| ! | GTTTGGTGATCGGTTGGTCA+TGG | + | chr5.4:2608575-2608594 | MS.gene024815:CDS | 50.0% |
| ! | TGAAGGGTTTTCGTGTGGCT+TGG | + | chr5.4:2609845-2609864 | MS.gene024815:intron | 50.0% |
| ! | TGGGACTGTTGCTGTGGTTT+TGG | + | chr5.4:2612002-2612021 | MS.gene024815:CDS | 50.0% |
| !! | CCATGCTCTAAGGCTTGGTT+TGG | - | chr5.4:2610028-2610047 | None:intergenic | 50.0% |
| !! | CTTGGTTTGGGAGTTTGGAG+GGG | - | chr5.4:2610015-2610034 | None:intergenic | 50.0% |
| !! | GCTTGGTTTGGGAGTTTGGA+GGG | - | chr5.4:2610016-2610035 | None:intergenic | 50.0% |
| !! | GGTCACTTCTAGTTCCTGGA+TGG | + | chr5.4:2610251-2610270 | MS.gene024815:intron | 50.0% |
| !! | TGATCGGTTTGGTGATCGGT+TGG | + | chr5.4:2608569-2608588 | MS.gene024815:CDS | 50.0% |
| !! | TGCAACCATGCTCTAAGGCT+TGG | - | chr5.4:2610033-2610052 | None:intergenic | 50.0% |
| ACGCTACCAAACACGCTGCT+CGG | + | chr5.4:2608809-2608828 | MS.gene024815:CDS | 55.0% | |
| ACTTCGGAATGGGAGGGCTT+TGG | - | chr5.4:2609701-2609720 | None:intergenic | 55.0% | |
| AGAGTTTGAAGGGGAGGGTG+AGG | + | chr5.4:2609440-2609459 | MS.gene024815:intron | 55.0% | |
| CACAGCAACAGTCCCACCTA+AGG | - | chr5.4:2611998-2612017 | None:intergenic | 55.0% | |
| CGGTGAACGCTAACCAGAGA+CGG | - | chr5.4:2608687-2608706 | None:intergenic | 55.0% | |
| CTTAGGTGGGACTGTTGCTG+TGG | + | chr5.4:2611996-2612015 | MS.gene024815:CDS | 55.0% | |
| GAGTTTGAAGGGGAGGGTGA+GGG | + | chr5.4:2609441-2609460 | MS.gene024815:intron | 55.0% | |
| GATTGGAAGTGGGTGGCCTT+AGG | + | chr5.4:2611979-2611998 | MS.gene024815:CDS | 55.0% | |
| GCTCGCACACTGCAAAGTGT+TGG | + | chr5.4:2610906-2610925 | MS.gene024815:CDS | 55.0% | |
| GCTTGCGGTCATGATCGGTT+TGG | + | chr5.4:2608558-2608577 | MS.gene024815:CDS | 55.0% | |
| GGAGTTCGCCATGGAATGTG+GGG | + | chr5.4:2611754-2611773 | MS.gene024815:CDS | 55.0% | |
| TGACAGCTCCCCACATTCCA+TGG | - | chr5.4:2611765-2611784 | None:intergenic | 55.0% | |
| TTCTTATGGACGGTTCCGCC+GGG | + | chr5.4:2608649-2608668 | MS.gene024815:CDS | 55.0% | |
| ! | AATGCCCGGCAGATTGGTCA+CGG | + | chr5.4:2611952-2611971 | MS.gene024815:CDS | 55.0% |
| ! | AGATTGGTCACGGCGTGGAT+TGG | + | chr5.4:2611962-2611981 | MS.gene024815:CDS | 55.0% |
| ! | CGAGCATTGTTGTTGGGAGC+AGG | + | chr5.4:2612048-2612067 | MS.gene024815:CDS | 55.0% |
| ! | CGTCTGGGCTTATCGCGTTT+TGG | - | chr5.4:2611508-2611527 | None:intergenic | 55.0% |
| ! | CTTTGGGGGGAGAGGAATAG+AGG | + | chr5.4:2609464-2609483 | MS.gene024815:intron | 55.0% |
| ! | TTGAGAGGGAAGGGCTTTGG+GGG | + | chr5.4:2609752-2609771 | MS.gene024815:intron | 55.0% |
| !! | AGCAGCGTGTTTGGTAGCGT+CGG | - | chr5.4:2608809-2608828 | None:intergenic | 55.0% |
| !! | CGCACACTGCAAAGTGTTGG+AGG | + | chr5.4:2610909-2610928 | MS.gene024815:CDS | 55.0% |
| !! | GGCTTGGTTTGGGAGTTTGG+AGG | - | chr5.4:2610017-2610036 | None:intergenic | 55.0% |
| !! | TCACGGCGTGGATTGGAAGT+GGG | + | chr5.4:2611969-2611988 | MS.gene024815:CDS | 55.0% |
| !! | TGCGGTTCCGATTTGGCTTG+CGG | + | chr5.4:2608543-2608562 | MS.gene024815:CDS | 55.0% |
| AAGAGAAGTCCGGTCCACCG+TGG | - | chr5.4:2608604-2608623 | None:intergenic | 60.0% | |
| AAGGGGAGGGTGAGGGCTTT+GGG | + | chr5.4:2609448-2609467 | MS.gene024815:intron | 60.0% | |
| GCTCGAAGGATTTGGCAGGC+TGG | + | chr5.4:2611087-2611106 | MS.gene024815:CDS | 60.0% | |
| TGGGCAGTTGTCTGCATGCG+AGG | + | chr5.4:2611678-2611697 | MS.gene024815:CDS | 60.0% | |
| ! | GGAAGTGGGTGGCCTTAGGT+GGG | + | chr5.4:2611983-2612002 | MS.gene024815:CDS | 60.0% |
| ! | TCGGTTGGTCATGGCGTCCA+CGG | + | chr5.4:2608584-2608603 | MS.gene024815:CDS | 60.0% |
| ! | TGGAAGTGGGTGGCCTTAGG+TGG | + | chr5.4:2611982-2612001 | MS.gene024815:CDS | 60.0% |
| !! | AGCGTGTTTGGTAGCGTCGG+TGG | - | chr5.4:2608806-2608825 | None:intergenic | 60.0% |
| !! | GTCACGGCGTGGATTGGAAG+TGG | + | chr5.4:2611968-2611987 | MS.gene024815:CDS | 60.0% |
| AGGGGAGGGTGAGGGCTTTG+GGG | + | chr5.4:2609449-2609468 | MS.gene024815:intron | 65.0% | |
| CACGCCGTGACCAATCTGCC+GGG | - | chr5.4:2611959-2611978 | None:intergenic | 65.0% | |
| CCACGCCGTGACCAATCTGC+CGG | - | chr5.4:2611960-2611979 | None:intergenic | 65.0% | |
| GAAGGGGAGGGTGAGGGCTT+TGG | + | chr5.4:2609447-2609466 | MS.gene024815:intron | 65.0% | |
| GTTGGTCATGGCGTCCACGG+TGG | + | chr5.4:2608587-2608606 | MS.gene024815:CDS | 65.0% | |
| TCATGGCGTCCACGGTGGAC+CGG | + | chr5.4:2608592-2608611 | MS.gene024815:CDS | 65.0% | |
| TGGACGGTTCCGCCGGGATT+CGG | + | chr5.4:2608655-2608674 | MS.gene024815:CDS | 65.0% | |
| !! | AGACGGCGAGCACCGAATCC+CGG | - | chr5.4:2608670-2608689 | None:intergenic | 65.0% |
| !! | CGGCGTGGATTGGAAGTGGG+TGG | + | chr5.4:2611972-2611991 | MS.gene024815:CDS | 65.0% |
| !! | GATTCGGTGCTCGCCGTCTC+TGG | + | chr5.4:2608671-2608690 | MS.gene024815:CDS | 65.0% |
| ! | CCGGCAGATTGGTCACGGCG+TGG | + | chr5.4:2611957-2611976 | MS.gene024815:CDS | 70.0% |
| ! | GGGGAGGGTGAGGGCTTTGG+GGG | + | chr5.4:2609450-2609469 | MS.gene024815:intron | 70.0% |
| !! | GGGAGGGTGAGGGCTTTGGG+GGG | + | chr5.4:2609451-2609470 | MS.gene024815:intron | 70.0% |
| !! | GGTGAGGGCTTTGGGGGGAG+AGG | + | chr5.4:2609456-2609475 | MS.gene024815:intron | 70.0% |
| !! | CGGCGAGCACCGAATCCCGG+CGG | - | chr5.4:2608667-2608686 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 2608463 | 2612092 | 2608463 | ID=MS.gene024815 |
| chr5.4 | mRNA | 2608463 | 2612092 | 2608463 | ID=MS.gene024815.t1;Parent=MS.gene024815 |
| chr5.4 | exon | 2608463 | 2608830 | 2608463 | ID=MS.gene024815.t1.exon1;Parent=MS.gene024815.t1 |
| chr5.4 | CDS | 2608463 | 2608830 | 2608463 | ID=cds.MS.gene024815.t1;Parent=MS.gene024815.t1 |
| chr5.4 | exon | 2610358 | 2610523 | 2610358 | ID=MS.gene024815.t1.exon2;Parent=MS.gene024815.t1 |
| chr5.4 | CDS | 2610358 | 2610523 | 2610358 | ID=cds.MS.gene024815.t1;Parent=MS.gene024815.t1 |
| chr5.4 | exon | 2610799 | 2610975 | 2610799 | ID=MS.gene024815.t1.exon3;Parent=MS.gene024815.t1 |
| chr5.4 | CDS | 2610799 | 2610975 | 2610799 | ID=cds.MS.gene024815.t1;Parent=MS.gene024815.t1 |
| chr5.4 | exon | 2611051 | 2611134 | 2611051 | ID=MS.gene024815.t1.exon4;Parent=MS.gene024815.t1 |
| chr5.4 | CDS | 2611051 | 2611134 | 2611051 | ID=cds.MS.gene024815.t1;Parent=MS.gene024815.t1 |
| chr5.4 | exon | 2611484 | 2611565 | 2611484 | ID=MS.gene024815.t1.exon5;Parent=MS.gene024815.t1 |
| chr5.4 | CDS | 2611484 | 2611565 | 2611484 | ID=cds.MS.gene024815.t1;Parent=MS.gene024815.t1 |
| chr5.4 | exon | 2611659 | 2612092 | 2611659 | ID=MS.gene024815.t1.exon6;Parent=MS.gene024815.t1 |
| chr5.4 | CDS | 2611659 | 2612092 | 2611659 | ID=cds.MS.gene024815.t1;Parent=MS.gene024815.t1 |
| Gene Sequence |
| Protein sequence |
