AlfalfaGEDB | MS.gene21791

M. sativa cultivar XinJiangDaYe / MS.gene21791

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008289
PFAM: PF01852.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21791.t1	XP_003610788.1	98.9	436	5	0	1	436	1	436	9.30E-257	895.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21791.t1	Q8R1R3	28.4	194	128	5	149	338	136	322	9.4e-16	86.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21791.t1	G7K527	98.9	436	5	0	1	436	1	436	6.7e-257	895.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049580	MS.gene21791	0.80518	1.51E-49	-1.69E-46
MS.gene050838	MS.gene21791	0.803176	3.95E-49	-1.69E-46
MS.gene051902	MS.gene21791	0.818248	2.16E-52	-1.69E-46
MS.gene051903	MS.gene21791	0.834236	3.37E-56	-1.69E-46
MS.gene052818	MS.gene21791	-0.80441	2.19E-49	-1.69E-46
MS.gene052947	MS.gene21791	0.807365	5.24E-50	-1.69E-46
MS.gene055174	MS.gene21791	0.815622	8.41E-52	-1.69E-46
MS.gene055424	MS.gene21791	0.82438	8.33E-54	-1.69E-46
MS.gene057094	MS.gene21791	0.828738	7.61E-55	-1.69E-46
MS.gene057234	MS.gene21791	0.830065	3.62E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene024815	MS.gene21791	PPI
MS.gene058074	MS.gene21791	PPI
MS.gene40498	MS.gene21791	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21791.t1	MTR_5g007030	98.853	436	5	0	1	436	1	436	0.0	894
MS.gene21791.t1	MTR_5g007030	99.042	313	3	0	124	436	14	326	0.0	646
MS.gene21791.t1	MTR_3g092640	42.657	429	228	7	12	434	1	417	3.13e-121	359
MS.gene21791.t1	MTR_1g078030	42.755	421	200	8	17	435	9	390	9.26e-117	347
MS.gene21791.t1	MTR_4g005140	29.018	224	150	4	126	347	62	278	1.03e-31	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21791.t1	AT4G14500	65.831	439	141	5	1	436	1	433	0.0	597
MS.gene21791.t1	AT3G23080	65.429	431	130	7	9	436	5	419	0.0	558
MS.gene21791.t1	AT3G23080	64.851	404	123	7	36	436	1	388	0.0	512
MS.gene21791.t1	AT3G23080	64.851	404	123	7	36	436	1	388	0.0	512
MS.gene21791.t1	AT1G64720	44.096	415	181	6	21	435	17	380	1.11e-121	359
MS.gene21791.t1	AT5G54170	45.561	428	212	6	23	434	6	428	1.35e-120	358
MS.gene21791.t1	AT4G14500	60.072	278	106	3	1	274	1	277	8.27e-117	343
MS.gene21791.t1	AT3G13062	29.934	304	189	9	136	431	84	371	4.97e-36	137
MS.gene21791.t1	AT3G13062	31.250	304	185	10	136	431	84	371	1.02e-35	137
MS.gene21791.t1	AT3G13062	29.167	312	189	9	136	431	84	379	1.30e-34	133

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Find 124 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTAGAGGTCTACGCGTC+TGG	0.348134	5.2:-1580901	None:intergenic
AAGAAATCCCTCACTAACTC+AGG	0.556254	5.2:-1580228	None:intergenic
AAGACCGATGAAGAGAAGTC+CGG	0.606267	5.2:-1577925	None:intergenic
AAGAGAAGTCCGGTCCACCG+TGG	0.703241	5.2:-1577915	None:intergenic
AAGTAGAGGTCTACGCGTCT+GGG	0.548459	5.2:-1580900	None:intergenic
AATAGAGAAAGCAGAAAGAG+CGG	0.618635	5.2:-1578018	None:intergenic
AATCTGTCGGGCATTGTTGA+TGG	0.394962	5.2:-1581324	None:intergenic
AATGCCCGACAGATTGGTCA+CGG	0.651595	5.2:+1581332	MS.gene21791:CDS
AATTGTTCACTGGATTAAAA+AGG	0.263893	5.2:+1580335	MS.gene21791:CDS
ACAACCAGGCTTTCTTCTAA+TGG	0.315169	5.2:+1581251	MS.gene21791:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTTGCAAACAAAGCCTT+AGG	+	chr5.2:1579040-1579059	MS.gene21791:intron	30.0%
AAGGAACTCAAACATTGTAT+TGG	-	chr5.2:1578900-1578919	None:intergenic	30.0%
AATAAATCAGCATCTGATCT+TGG	+	chr5.2:1580145-1580164	MS.gene21791:intron	30.0%
AATAGATTCTCTACCTCTAA+AGG	-	chr5.2:1578460-1578479	None:intergenic	30.0%
AATATATCAAACAACCATCC+AGG	-	chr5.2:1579650-1579669	None:intergenic	30.0%
AATCAAACCTGGTAAGAAAT+AGG	+	chr5.2:1580935-1580954	MS.gene21791:intron	30.0%
AATTGATGTTCCTATGTAAG+TGG	+	chr5.2:1579612-1579631	MS.gene21791:intron	30.0%
AATTTGCAAACAAAGCCTTA+GGG	+	chr5.2:1579041-1579060	MS.gene21791:intron	30.0%
ACGAATGTTTCAGTTATTGA+AGG	-	chr5.2:1577822-1577841	None:intergenic	30.0%
AGAAAATCCTGTTAATCTGA+AGG	+	chr5.2:1580612-1580631	MS.gene21791:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	1577777	1581472	1577777	ID=MS.gene21791
chr5.2	mRNA	1577777	1581472	1577777	ID=MS.gene21791.t1;Parent=MS.gene21791
chr5.2	exon	1577777	1578144	1577777	ID=MS.gene21791.t1.exon1;Parent=MS.gene21791.t1
chr5.2	CDS	1577777	1578144	1577777	ID=cds.MS.gene21791.t1;Parent=MS.gene21791.t1
chr5.2	exon	1579740	1579905	1579740	ID=MS.gene21791.t1.exon2;Parent=MS.gene21791.t1
chr5.2	CDS	1579740	1579905	1579740	ID=cds.MS.gene21791.t1;Parent=MS.gene21791.t1
chr5.2	exon	1580180	1580356	1580180	ID=MS.gene21791.t1.exon3;Parent=MS.gene21791.t1
chr5.2	CDS	1580180	1580356	1580180	ID=cds.MS.gene21791.t1;Parent=MS.gene21791.t1
chr5.2	exon	1580432	1580515	1580432	ID=MS.gene21791.t1.exon4;Parent=MS.gene21791.t1
chr5.2	CDS	1580432	1580515	1580432	ID=cds.MS.gene21791.t1;Parent=MS.gene21791.t1
chr5.2	exon	1580864	1580945	1580864	ID=MS.gene21791.t1.exon5;Parent=MS.gene21791.t1
chr5.2	CDS	1580864	1580945	1580864	ID=cds.MS.gene21791.t1;Parent=MS.gene21791.t1
chr5.2	exon	1581039	1581472	1581039	ID=MS.gene21791.t1.exon6;Parent=MS.gene21791.t1
chr5.2	CDS	1581039	1581472	1581039	ID=cds.MS.gene21791.t1;Parent=MS.gene21791.t1

Gene Sequence

>MS.gene21791

ATGGAGGATTATTTATTCGATGTTATGGAGTTTATGAAGAAACCTTCAATAACTGAAACATTCGTCGATATTTTGCTATGCGCGGTTCCGATTTGGCTTGCGGTCATGATCGGTTTGGTGATCGGTTGGTCATGGCGCCCACGGTGGACCGGACTTCTCTTCATCGGTCTTCGGAGCAAGTTTCGTTTCTTATGGACGGTTCCGCCGGGATTCGGTGCTCGCCGTCTCTGGTTAGCGTTCACCGCTCTTTCTGCTTTCTCTATTTGTCGCAGATATTGGTCTAATTTCAAAATTAAGGAGAAAGTGCTGGATCCTTCTTCCAATTCGTGTTCTGATGACGCCACCGACGCTACCAAACACGCTTCTCGGTAATTCACTACATTATTTTTGGTTTCAATTCAAGTTATTAGGTTTTTTTTTTTTATTTATTGAAATTTATCTGGTTTATTGAAATATTGAAATATATATAATGTATCAGGTGTGTCTAGTATTGACATGTGATGGTTGATTTTTCATATACTTTTTCAGCATTTGTAGGAACTGGTTATATGTGTGGTAAGATTAGACAGAATACAATTATAAATGAGAACATTAGAGAGATAGAGAGAGTTGGGGTAGAACTTATAGTAGAAAATATGGTACAAACTAGACTTAGGTGGTTTGGGCATGTAGAGAGAAAACCTTTAGAGGTAGAGAATCTATTAAGAAGGATCTAGAGATTAATGAGTTGGATAAAGACATGGTTTTTGATATAACACTATGGCGTTGTTTAATTGATGCCGCTGACCCTGTTTAGTGGGATAAAACTTGATTTTTATTGTTGTTGTTAAGGAACTGGTTTTCTACATGTATGAATTAGTTTAGAGTTTAGACTATATATAATTTTGTTGGGTTAAGGATAGAGAGATATTTTAGTTGCTATCTTGCGCATCTCATTTTTTACTTAGCTACCTTTTAGGCTTTGTTTGAGAGTTTGAAGGGGAGGGTGAGGGCTTTGGGGGGAGAGGAATAGAGGATAAAATAGAGAAATCTTCCACATTTTTGAAAGAGTGTTTTTAATATTGAGATTTGAGAATATTACAACAACATAGATTGAATTTAAAGATTTCGAAATCTTTCTCCAATACAATGTTTGAGTTCCTTCAAAGTAGGGGGATTTTGAATTATGAAAAAAAACCTTCCAAAGCCCTCCCATTCCAAAGTCTTCTATTCCTTCCACCTGCTTCTTCCTTTTTTCCAAAGCCCTCCCCTCCCTTCCCTTCCAAATTTGCAAACAAAGCCTTAGGGTCTGTTTGAGAGTTTAGGAAGGGAGGACTTTGAAAGAAAGGAAGGATGAAGTGGAATGAATGAAGGGTTTTGAGAGGGGAGGGCTTTGGGGAATTGATTTTTCTTCGTGATACAAAATACCCTAATTTGGAGGAACTCAAAAATTGTATCACAACTGGATTTTGGAGGGTTTTGGTGTGGCTTGGATAAATTTTTCAATTCCAATCTATGTTGTTATAATACTCTCATTATTAAAAATATATTAATCATAAACATTCATTTATCATTCTCTAGAAAAATACTCTCAAAAAAGTTGAAAGATTTATTTATTTTTTCCCCTCTAATCTCCCCTCCAAACTCCCAAACCAAGCCTTAGAGTATGGTTGCAGCATTGATAATCTTGTAGTAGTTTGTTATGATTTTTCTACTTGGCACTTTACGTTCGCCGTGATTCTATGTGTAGGATCTTTTTCCAATTTCTTCTGTGTGTCTAATTTCCTTAAATATGACAATCAGCTTCTTTTTACTGTATCATGGATTTCATAAATGCGCACAAACATTAATTATCAAATTGATGTTCCTATGTAAGTGGGCACTTCTAGTTCCTGGATGGTTGTTTGATATATTATACTGTATTTCTAGCGGAAGAATGAAGCGTTTTATTCATTTTGGAACTTGGTTATTGCACATACATTAGGTCCGGTGATATGGCTGACGAGAGAGACAAGGATACAGTTACAGAGGCTGATTTGGAACATCTTCTTCATCTTCTTGAAGGGAAAGATGGAGAGATTGACTGGCAAAGTTTTATGGAAAGGTCAACACCAAATATGCAATACAAAGCTTGGCGTTATGACTCTGAGGTAGATTTTGATGTTCAATTTTCATCTTGTGCGGATATTGTCTGTAATCTGGCAAAAAAATAACAACGCATGTTACAAATAAATAATTTTTTTGGATATCCTTTCTATTTGAGGCACTTTTACTTCCTAGTTTAAAGTGGATTTATGTGAGTTATCTATATTCCATATTTGACACCCAAAAGGCTCATTACATAGTCATCATCTATGTTGATGATTATTTCTCTTTGTAGTTTGACTAAAATAAATCAGCATCTGATCTTGGAGCTTTTAACAGACAGGGGCTACAGTTTACCGTAGTAGAACTGTATTTGAAGATGCAACTCCTGAGTTAGTGAGGGATTTCTTCTGGGATGATGATTTTCGTCCCAAATGGGATCCTATGCTCGCACACTGCAAAGTGTTGGAGGAATGCCCTCATAATGGGACATCAATTGTTCACTGGATTAAAAAGGTATTTAAACCAAATAAATAGTTAATGTTGTATTTAATGTACACTGACATGGTTCACTTACTTTTCTATCCATAGTTCCCCTTTTTCTGCAGTGATCGGGAATATATTATTGCTCGAAGGATTTGGCAGGCTGGAAATGCATACTACTGTGTGACAAAGGTATGACTATAAGTTGTGACATAATTCATGCAATTTTGTGACATTTTATCTCGTTTCTTTCCCAATGGCTAGCCTCCATTCTTCTGTCACTAGAAAAGAAAATCCTGTTAATCTGAAGGCACTAACAGCGAAAGTTTCAATTTATCACTAGAAACAATTGAGCTTAAATTGTCATGCTAAGAATTTGTTAATACGAGTTTGCTATTACTCGACCCTGTTTCTTATATTTCTTTTTGTAGCCAATCTAATTTTTCATAAACCTGTGTATGTGTTGTCAGAAAAGACAATTCATATCTGATTATACAGTGTAAACGTAAGGTTTTTACTATTTAGTCTTCAATGTTGTAGGGGGTTCCCTATCCAAGTTTGCCAAAACGCGATAAGCCCAGACGCGTAGACCTCTACTTTTCTAGTTGGGTAATCAAACCTGGTAAGAAATAGGCAAAGTTCATTCTTATTTGCTTGTTAGCATCAACTATTTAATAATGGCGTTTTAACAATTGAGTGTGCGAAATTGATGCAGTGGAATCTCGCAAAGGAGATGGGCAGTTGTCTGCATGCGAGGTTACCCTTTTGCATCACGAAGACATGGGGATTCCAAAAGATGTTGCAAAGTTAGGAGTTCGCCATGGAATGTGGGGAGCTGTCAAGAAATTGCACTCTGGTATGAGAGCATACCAGAATGCTAGGAAAACAGATGCTTCTTTGTCGAGATGTGCGTTGATGGCAAGTAAAACAACCAGGCTTTCTTCTAATGGAAACTTGCATTCGTTAGAGGATGCGTCTTTGATGGAAGAGAGGGAGCAAGCCATCAACAATGCCCGACAGATTGGTCACGGCCTGGATTGGAAGTGGGTGGCCTTAGGTGGGACTGTTGCTGTGGTTTTGGGTATACACAGTGGTGCAGTAGGGCGAGCATTGTTGTTGGGAGCAGGGCATAGATTTGCACGGAGATGA

Protein sequence

>MS.gene21791.t1

MEDYLFDVMEFMKKPSITETFVDILLCAVPIWLAVMIGLVIGWSWRPRWTGLLFIGLRSKFRFLWTVPPGFGARRLWLAFTALSAFSICRRYWSNFKIKEKVLDPSSNSCSDDATDATKHASRSGDMADERDKDTVTEADLEHLLHLLEGKDGEIDWQSFMERSTPNMQYKAWRYDSETGATVYRSRTVFEDATPELVRDFFWDDDFRPKWDPMLAHCKVLEECPHNGTSIVHWIKKFPFFCSDREYIIARRIWQAGNAYYCVTKGVPYPSLPKRDKPRRVDLYFSSWVIKPVESRKGDGQLSACEVTLLHHEDMGIPKDVAKLGVRHGMWGAVKKLHSGMRAYQNARKTDASLSRCALMASKTTRLSSNGNLHSLEDASLMEEREQAINNARQIGHGLDWKWVALGGTVAVVLGIHSGAVGRALLLGAGHRFARR