Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40498.t1 | XP_003610788.1 | 98.9 | 436 | 5 | 0 | 1 | 436 | 1 | 436 | 2.40E-257 | 897.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40498.t1 | Q8R1R3 | 28.4 | 194 | 128 | 5 | 149 | 338 | 136 | 322 | 9.4e-16 | 86.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40498.t1 | G7K527 | 98.9 | 436 | 5 | 0 | 1 | 436 | 1 | 436 | 1.8e-257 | 897.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050838 | MS.gene40498 | 0.821822 | 3.29E-53 | -1.69E-46 |
| MS.gene051903 | MS.gene40498 | 0.808361 | 3.22E-50 | -1.69E-46 |
| MS.gene052072 | MS.gene40498 | 0.806316 | 8.73E-50 | -1.69E-46 |
| MS.gene052296 | MS.gene40498 | 0.802281 | 6.04E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene40498 | 0.80572 | 1.16E-49 | -1.69E-46 |
| MS.gene055424 | MS.gene40498 | 0.82718 | 1.80E-54 | -1.69E-46 |
| MS.gene057094 | MS.gene40498 | 0.810044 | 1.40E-50 | -1.69E-46 |
| MS.gene057234 | MS.gene40498 | 0.814796 | 1.28E-51 | -1.69E-46 |
| MS.gene058054 | MS.gene40498 | 0.816233 | 6.15E-52 | -1.69E-46 |
| MS.gene058055 | MS.gene40498 | 0.811641 | 6.33E-51 | -1.69E-46 |
| MS.gene058074 | MS.gene40498 | 0.977967 | 7.51E-145 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024815 | MS.gene40498 | PPI |
| MS.gene40498 | MS.gene21791 | PPI |
| MS.gene058074 | MS.gene40498 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40498.t1 | MTR_5g007030 | 98.853 | 436 | 5 | 0 | 1 | 436 | 1 | 436 | 0.0 | 895 |
| MS.gene40498.t1 | MTR_5g007030 | 98.722 | 313 | 4 | 0 | 124 | 436 | 14 | 326 | 0.0 | 644 |
| MS.gene40498.t1 | MTR_3g092640 | 43.023 | 430 | 225 | 8 | 12 | 434 | 1 | 417 | 2.86e-119 | 354 |
| MS.gene40498.t1 | MTR_1g078030 | 43.230 | 421 | 198 | 8 | 17 | 435 | 9 | 390 | 1.20e-116 | 347 |
| MS.gene40498.t1 | MTR_4g005140 | 29.018 | 224 | 150 | 4 | 126 | 347 | 62 | 278 | 1.16e-31 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40498.t1 | AT4G14500 | 66.364 | 440 | 137 | 6 | 1 | 436 | 1 | 433 | 0.0 | 595 |
| MS.gene40498.t1 | AT3G23080 | 65.197 | 431 | 131 | 6 | 9 | 436 | 5 | 419 | 0.0 | 560 |
| MS.gene40498.t1 | AT3G23080 | 64.604 | 404 | 124 | 6 | 36 | 436 | 1 | 388 | 0.0 | 514 |
| MS.gene40498.t1 | AT3G23080 | 64.604 | 404 | 124 | 6 | 36 | 436 | 1 | 388 | 0.0 | 514 |
| MS.gene40498.t1 | AT1G64720 | 43.990 | 416 | 180 | 6 | 21 | 435 | 17 | 380 | 1.61e-120 | 356 |
| MS.gene40498.t1 | AT5G54170 | 45.327 | 428 | 213 | 6 | 23 | 434 | 6 | 428 | 5.25e-120 | 357 |
| MS.gene40498.t1 | AT4G14500 | 61.290 | 279 | 101 | 4 | 1 | 274 | 1 | 277 | 3.14e-117 | 344 |
| MS.gene40498.t1 | AT3G13062 | 29.605 | 304 | 190 | 8 | 136 | 431 | 84 | 371 | 6.46e-36 | 137 |
| MS.gene40498.t1 | AT3G13062 | 29.605 | 304 | 190 | 8 | 136 | 431 | 84 | 371 | 1.51e-35 | 136 |
| MS.gene40498.t1 | AT3G13062 | 28.846 | 312 | 190 | 8 | 136 | 431 | 84 | 379 | 1.90e-34 | 133 |
| MS.gene40498.t1 | AT1G55960 | 31.727 | 249 | 156 | 6 | 128 | 369 | 75 | 316 | 2.72e-30 | 121 |
| MS.gene40498.t1 | AT1G55960 | 28.829 | 222 | 121 | 6 | 128 | 344 | 75 | 264 | 1.72e-18 | 87.0 |
Find 119 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGCTTTGTATTGCATATT+TGG | 0.148571 | 5.3:-2000567 | None:intergenic |
| TGGGACTGTTGCTGTGGTTT+TGG | 0.168770 | 5.3:+2002083 | MS.gene40498:CDS |
| CCTAACTTTGCAACATCTTT+TGG | 0.178743 | 5.3:-2001814 | None:intergenic |
| AGTTAGTGAGGGATTTCTTC+TGG | 0.188486 | 5.3:+2000933 | MS.gene40498:CDS |
| TTCCCGATCACTGCAGAAAA+AGG | 0.234946 | 5.3:-2001137 | None:intergenic |
| AATTGTTCACTGGATTAAAA+AGG | 0.263893 | 5.3:+2001036 | MS.gene40498:CDS |
| CCAAAAGATGTTGCAAAGTT+AGG | 0.281442 | 5.3:+2001814 | MS.gene40498:CDS |
| GGAGCAAGTTTCGTTTCTTA+TGG | 0.297226 | 5.3:+1998596 | MS.gene40498:CDS |
| CGTCTGGGCTTATCGCGTTT+TGG | 0.309096 | 5.3:-2001586 | None:intergenic |
| GGATTATTTATTCGATGTTA+TGG | 0.311579 | 5.3:+1998429 | MS.gene40498:CDS |
| ATACATTAGGTCCGGTGATA+TGG | 0.313982 | 5.3:+2000431 | MS.gene40498:intron |
| ACAACCAGGCTTTCTTCTAA+TGG | 0.315169 | 5.3:+2001952 | MS.gene40498:CDS |
| TACAGTTACAGAGGCTGATT+TGG | 0.318868 | 5.3:+2000473 | MS.gene40498:CDS |
| TGCTATGTGCGGTTCCGATT+TGG | 0.329919 | 5.3:+1998497 | MS.gene40498:CDS |
| TCTCTATTTGTCGCAGATAT+TGG | 0.336013 | 5.3:+1998680 | MS.gene40498:CDS |
| TGGAAACTTGCATTCGTTAG+AGG | 0.346382 | 5.3:+2001972 | MS.gene40498:CDS |
| AAAGTAGAGGTCTACGCGTC+TGG | 0.348134 | 5.3:-2001602 | None:intergenic |
| CATCTTCTTCATCTTCTTGA+AGG | 0.364952 | 5.3:+2000498 | MS.gene40498:CDS |
| GATTGGAAGTGGGTGGCCTT+AGG | 0.367105 | 5.3:+2002060 | MS.gene40498:CDS |
| CGAGCATTGTTGTTGGGAGC+AGG | 0.370322 | 5.3:+2002129 | MS.gene40498:CDS |
| GTTAGTGAGGGATTTCTTCT+GGG | 0.373539 | 5.3:+2000934 | MS.gene40498:CDS |
| ATATTATTGCTCGAAGGATT+TGG | 0.373822 | 5.3:+2001161 | MS.gene40498:CDS |
| TGGACGGTTCCGCCGGGATT+CGG | 0.387516 | 5.3:+1998616 | MS.gene40498:CDS |
| TTGGAGGAATGCCCTCATAA+TGG | 0.394374 | 5.3:+2001007 | MS.gene40498:CDS |
| AATCTGTCGGGCATTGTTGA+TGG | 0.394962 | 5.3:-2002025 | None:intergenic |
| TTTGTCGAGATGTGCGTTGA+TGG | 0.403304 | 5.3:+2001921 | MS.gene40498:CDS |
| GATTCGGTGCTCGCCGTCTC+TGG | 0.407752 | 5.3:+1998632 | MS.gene40498:CDS |
| ACGCTACCAAACACGCTTCT+CGG | 0.411331 | 5.3:+1998770 | MS.gene40498:CDS |
| GACTTCTCTTCATCGGTCTT+CGG | 0.414196 | 5.3:+1998575 | MS.gene40498:CDS |
| GGCGTCATCAGAACACGAAT+TGG | 0.416015 | 5.3:-1998743 | None:intergenic |
| TGCGAGCATAGGATCCCATT+TGG | 0.417922 | 5.3:-2000972 | None:intergenic |
| CCATGTCTTCGTGATGCAAA+AGG | 0.428688 | 5.3:-2001786 | None:intergenic |
| TTTCTTATGGACGGTTCCGC+CGG | 0.430105 | 5.3:+1998609 | MS.gene40498:CDS |
| TGGAGGAATGCCCTCATAAT+GGG | 0.431673 | 5.3:+2001008 | MS.gene40498:CDS |
| GTAGGGCGAGCATTGTTGTT+GGG | 0.436511 | 5.3:+2002123 | MS.gene40498:CDS |
| ACAATTGATGTCCCATTATG+AGG | 0.437523 | 5.3:-2001019 | None:intergenic |
| CATCTTCTTGAAGGGAAAGA+TGG | 0.441427 | 5.3:+2000507 | MS.gene40498:CDS |
| ATCATGACCGCAAGCCAAAT+CGG | 0.444905 | 5.3:-1998511 | None:intergenic |
| GAATTACCGAGAAGCGTGTT+TGG | 0.447476 | 5.3:-1998776 | None:intergenic |
| AGGCCACCCACTTCCAATCC+AGG | 0.453527 | 5.3:-2002056 | None:intergenic |
| TATGAAGAAACCTTCAATAA+CGG | 0.462966 | 5.3:+1998456 | MS.gene40498:CDS |
| TGGAAGTGGGTGGCCTTAGG+TGG | 0.465831 | 5.3:+2002063 | MS.gene40498:CDS |
| AGATTGGTCACGGCCTGGAT+TGG | 0.468477 | 5.3:+2002043 | MS.gene40498:CDS |
| ATTTGGCTTGCGGTCATGAT+CGG | 0.474486 | 5.3:+1998514 | MS.gene40498:CDS |
| GTCACGGCCTGGATTGGAAG+TGG | 0.475906 | 5.3:+2002049 | MS.gene40498:CDS |
| ACGAATGTTTCCGTTATTGA+AGG | 0.481101 | 5.3:-1998466 | None:intergenic |
| GTGGAATCTCGCAAAGGAGA+TGG | 0.484870 | 5.3:+2001739 | MS.gene40498:intron |
| ATCAACAATGCCCGACAGAT+TGG | 0.485079 | 5.3:+2002027 | MS.gene40498:CDS |
| GTTTGGTGATCGGTTGGTCA+TGG | 0.485828 | 5.3:+1998536 | MS.gene40498:CDS |
| AGACGGCGAGCACCGAATCC+CGG | 0.489608 | 5.3:-1998628 | None:intergenic |
| GCGAGCATAGGATCCCATTT+GGG | 0.491899 | 5.3:-2000971 | None:intergenic |
| TGACAGCTCCCCACATTCCA+TGG | 0.497311 | 5.3:-2001843 | None:intergenic |
| TGCGGTTCCGATTTGGCTTG+CGG | 0.503029 | 5.3:+1998504 | MS.gene40498:CDS |
| GTCATGATCGGTTTGGTGAT+CGG | 0.504723 | 5.3:+1998526 | MS.gene40498:CDS |
| AGTAGGGCGAGCATTGTTGT+TGG | 0.504978 | 5.3:+2002122 | MS.gene40498:CDS |
| TTCTTATGGACGGTTCCGCC+GGG | 0.508895 | 5.3:+1998610 | MS.gene40498:CDS |
| ATGGGACATCAATTGTTCAC+TGG | 0.510323 | 5.3:+2001026 | MS.gene40498:CDS |
| TATTGCTCGAAGGATTTGGC+AGG | 0.516863 | 5.3:+2001165 | MS.gene40498:CDS |
| GCTTGCGGTCATGATCGGTT+TGG | 0.517226 | 5.3:+1998519 | MS.gene40498:CDS |
| CAAATATGCAATACAAAGCT+TGG | 0.518060 | 5.3:+2000568 | MS.gene40498:CDS |
| CAAGTTTCGTTTCTTATGGA+CGG | 0.518083 | 5.3:+1998600 | MS.gene40498:CDS |
| TCTAGTTGGGTAATCAAACC+TGG | 0.518454 | 5.3:+2001625 | MS.gene40498:CDS |
| TGATCGGTTTGGTGATCGGT+TGG | 0.518750 | 5.3:+1998530 | MS.gene40498:CDS |
| GGAAGTGGGTGGCCTTAGGT+GGG | 0.520331 | 5.3:+2002064 | MS.gene40498:CDS |
| GTTTCCATTAGAAGAAAGCC+TGG | 0.520462 | 5.3:-2001956 | None:intergenic |
| TAGGAGTTCGCCATGGAATG+TGG | 0.521492 | 5.3:+2001833 | MS.gene40498:CDS |
| CGCACACTGCAAAGTGTTGG+AGG | 0.521745 | 5.3:+2000991 | MS.gene40498:CDS |
| GAGCATTGTTGTTGGGAGCA+GGG | 0.522764 | 5.3:+2002130 | MS.gene40498:CDS |
| ATCTTCTTCATCTTCTTGAA+GGG | 0.522948 | 5.3:+2000499 | MS.gene40498:CDS |
| GGAAAGATGGAGAGATTGAC+TGG | 0.525971 | 5.3:+2000520 | MS.gene40498:CDS |
| TGGAATCTCGCAAAGGAGAT+GGG | 0.527938 | 5.3:+2001740 | MS.gene40498:CDS |
| TCATGGCGTCCACGGTGGAC+CGG | 0.529717 | 5.3:+1998553 | MS.gene40498:CDS |
| CATGTCTTCGTGATGCAAAA+GGG | 0.535250 | 5.3:-2001785 | None:intergenic |
| TGAGAGCATACCAGAATGCT+AGG | 0.537126 | 5.3:+2001884 | MS.gene40498:CDS |
| GGTATACACAGTGGTGCAGT+AGG | 0.538233 | 5.3:+2002105 | MS.gene40498:CDS |
| CCGACAGATTGGTCACGGCC+TGG | 0.540884 | 5.3:+2002038 | MS.gene40498:CDS |
| GCTCGAAGGATTTGGCAGGC+TGG | 0.543160 | 5.3:+2001169 | MS.gene40498:CDS |
| TCGGTTGGTCATGGCGTCCA+CGG | 0.546920 | 5.3:+1998545 | MS.gene40498:CDS |
| AAGTAGAGGTCTACGCGTCT+GGG | 0.548459 | 5.3:-2001601 | None:intergenic |
| CTTAGGTGGGACTGTTGCTG+TGG | 0.550839 | 5.3:+2002077 | MS.gene40498:CDS |
| TCACGGCCTGGATTGGAAGT+GGG | 0.553226 | 5.3:+2002050 | MS.gene40498:CDS |
| GCTCGCACACTGCAAAGTGT+TGG | 0.555461 | 5.3:+2000988 | MS.gene40498:CDS |
| AAGAAATCCCTCACTAACTC+AGG | 0.556254 | 5.3:-2000929 | None:intergenic |
| ACTTTGCAGTGTGCGAGCAT+AGG | 0.560803 | 5.3:-2000983 | None:intergenic |
| TCAGAACACGAATTGGAAGA+AGG | 0.560879 | 5.3:-1998736 | None:intergenic |
| AGGAGTTCGCCATGGAATGT+GGG | 0.565387 | 5.3:+2001834 | MS.gene40498:CDS |
| CAGGCCGTGACCAATCTGTC+GGG | 0.566688 | 5.3:-2002037 | None:intergenic |
| CCAGGCCGTGACCAATCTGT+CGG | 0.568274 | 5.3:-2002038 | None:intergenic |
| AGCGTGTTTGGTAGCGTCGG+TGG | 0.579757 | 5.3:-1998764 | None:intergenic |
| CACAGCAACAGTCCCACCTA+AGG | 0.583165 | 5.3:-2002076 | None:intergenic |
| CAATTGATGTCCCATTATGA+GGG | 0.583701 | 5.3:-2001018 | None:intergenic |
| ATGCAACTCCTGAGTTAGTG+AGG | 0.591962 | 5.3:+2000921 | MS.gene40498:CDS |
| CTTCAAATACAGTTCTACTA+CGG | 0.596069 | 5.3:-2000898 | None:intergenic |
| TGGGCAGTTGTCTGCATGCG+AGG | 0.601567 | 5.3:+2001759 | MS.gene40498:CDS |
| CGGCCTGGATTGGAAGTGGG+TGG | 0.605735 | 5.3:+2002053 | MS.gene40498:CDS |
| AAGACCGATGAAGAGAAGTC+CGG | 0.606267 | 5.3:-1998572 | None:intergenic |
| CGGTGAACGCTAACCAGAGA+CGG | 0.606502 | 5.3:-1998645 | None:intergenic |
| TGCATACTACTGTGTGACAA+AGG | 0.612553 | 5.3:+2001195 | MS.gene40498:CDS |
| AATAGAGAAAGCAGAAAGAG+CGG | 0.618635 | 5.3:-1998665 | None:intergenic |
| GGGAATATATTATTGCTCGA+AGG | 0.619326 | 5.3:+2001155 | MS.gene40498:CDS |
| TGGACCGGACTTCTCTTCAT+CGG | 0.622743 | 5.3:+1998568 | MS.gene40498:CDS |
| TCTCTCGTCAGCCATATCAC+CGG | 0.623742 | 5.3:-2000442 | None:intergenic |
| TGCAACTCCTGAGTTAGTGA+GGG | 0.625852 | 5.3:+2000922 | MS.gene40498:CDS |
| GAGCAGGGCATAGATTTGCA+CGG | 0.635579 | 5.3:+2002145 | MS.gene40498:CDS |
| AGAAGCGTGTTTGGTAGCGT+CGG | 0.637843 | 5.3:-1998767 | None:intergenic |
| AGACAAGGATACAGTTACAG+AGG | 0.641279 | 5.3:+2000464 | MS.gene40498:CDS |
| TTACCCAACTAGAAAAGTAG+AGG | 0.644640 | 5.3:-2001615 | None:intergenic |
| GCTGTCAAGAAATTGCACTC+TGG | 0.647856 | 5.3:+2001859 | MS.gene40498:CDS |
| AATGCCCGACAGATTGGTCA+CGG | 0.651595 | 5.3:+2002033 | MS.gene40498:CDS |
| GGAGTTCGCCATGGAATGTG+GGG | 0.655861 | 5.3:+2001835 | MS.gene40498:CDS |
| TGATGGCAAGTAAAACAACC+AGG | 0.673260 | 5.3:+2001938 | MS.gene40498:CDS |
| AGCTTGGCGTTATGACTCTG+AGG | 0.673296 | 5.3:+2000584 | MS.gene40498:CDS |
| TATGGCTGACGAGAGAGACA+AGG | 0.679529 | 5.3:+2000449 | MS.gene40498:CDS |
| GTATACACAGTGGTGCAGTA+GGG | 0.686841 | 5.3:+2002106 | MS.gene40498:CDS |
| GCAAAGTTAGGAGTTCGCCA+TGG | 0.689467 | 5.3:+2001826 | MS.gene40498:CDS |
| GTTGGTCATGGCGTCCACGG+TGG | 0.693217 | 5.3:+1998548 | MS.gene40498:CDS |
| GATGCAGTGGAATCTCGCAA+AGG | 0.695128 | 5.3:+2001733 | MS.gene40498:intron |
| AAGAGAAGTCCGGTCCACCG+TGG | 0.715281 | 5.3:-1998562 | None:intergenic |
| CGGCGAGCACCGAATCCCGG+CGG | 0.734938 | 5.3:-1998625 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTGAAATTTATC+TGG | + | chr5.3:1998845-1998864 | MS.gene40498:intron | 10.0% |
| !! | AAAAAGAAATATAAGAAACA+GGG | - | chr5.3:2001432-2001451 | None:intergenic | 15.0% |
| !! | TACAACATTAACTATTTATT+TGG | - | chr5.3:2001070-2001089 | None:intergenic | 15.0% |
| !! | TGAAATATATATAATGTATC+AGG | + | chr5.3:1998881-1998900 | MS.gene40498:intron | 15.0% |
| !!! | AGACTATATATAATTTTGTT+GGG | + | chr5.3:1999346-1999365 | MS.gene40498:intron | 15.0% |
| !!! | TAGACTATATATAATTTTGT+TGG | + | chr5.3:1999345-1999364 | MS.gene40498:intron | 15.0% |
| !! | ACTTATAGTAGTAGAAAATA+TGG | + | chr5.3:1999045-1999064 | MS.gene40498:intron | 20.0% |
| !! | AGGTTTATGAAAAATTAGAT+TGG | - | chr5.3:2001459-2001478 | None:intergenic | 20.0% |
| !! | AGTATTATAACAACATAGAT+TGG | - | chr5.3:1999967-1999986 | None:intergenic | 20.0% |
| !! | ATTTAATCTTCAATGTTGTA+GGG | + | chr5.3:2001544-2001563 | MS.gene40498:intron | 20.0% |
| !! | CAAAAAGAAATATAAGAAAC+AGG | - | chr5.3:2001433-2001452 | None:intergenic | 20.0% |
| !! | TAGCATCAACTATTTAATAA+TGG | + | chr5.3:2001683-2001702 | MS.gene40498:intron | 20.0% |
| !! | TATTTAATCTTCAATGTTGT+AGG | + | chr5.3:2001543-2001562 | MS.gene40498:intron | 20.0% |
| !! | TTGGTCTAATTTCAAAAATA+AGG | + | chr5.3:1998699-1998718 | MS.gene40498:CDS | 20.0% |
| !!! | ATATTATACTGTATTTCTAG+CGG | + | chr5.3:2000365-2000384 | MS.gene40498:intron | 20.0% |
| !!! | GATTTTTATTGTTGTTGTTA+AGG | + | chr5.3:1999286-1999305 | MS.gene40498:intron | 20.0% |
| !!! | GTAATTCACTACATTATTTT+TGG | + | chr5.3:1998792-1998811 | MS.gene40498:intron | 20.0% |
| !!! | TATACTTTTTCAGCATTTTT+AGG | + | chr5.3:1998940-1998959 | MS.gene40498:intron | 20.0% |
| !!! | TATATAATTTTGTTGGGTTA+AGG | + | chr5.3:1999352-1999371 | MS.gene40498:intron | 20.0% |
| !!! | TTTGTTATGATTTTTCTACT+TGG | + | chr5.3:2000152-2000171 | MS.gene40498:intron | 20.0% |
| ! | AAAACACTCTTTCAAAAATG+TGG | - | chr5.3:1999513-1999532 | None:intergenic | 25.0% |
| ! | AATTGTTCACTGGATTAAAA+AGG | + | chr5.3:2001036-2001055 | MS.gene40498:CDS | 25.0% |
| ! | ACATAAATCCACTTTAAACT+AGG | - | chr5.3:2000735-2000754 | None:intergenic | 25.0% |
| ! | GGATTATTTATTCGATGTTA+TGG | + | chr5.3:1998429-1998448 | MS.gene40498:CDS | 25.0% |
| ! | TATGAAGAAACCTTCAATAA+CGG | + | chr5.3:1998456-1998475 | MS.gene40498:CDS | 25.0% |
| ! | TGATACAAAATACCCTAATT+TGG | + | chr5.3:1999871-1999890 | MS.gene40498:intron | 25.0% |
| ! | TTTAATCTTCAATGTTGTAG+GGG | + | chr5.3:2001545-2001564 | MS.gene40498:intron | 25.0% |
| !! | GGTTTCAATTCAAGTTATTA+GGG | + | chr5.3:1998813-1998832 | MS.gene40498:intron | 25.0% |
| !! | TGGTTTCAATTCAAGTTATT+AGG | + | chr5.3:1998812-1998831 | MS.gene40498:intron | 25.0% |
| !! | TGGTTTTTGATATAACACTA+TGG | + | chr5.3:1999217-1999236 | MS.gene40498:intron | 25.0% |
| !! | TTTTACTTCCTAGTTTAAAG+TGG | + | chr5.3:2000724-2000743 | MS.gene40498:intron | 25.0% |
| !!! | ATGAAGCGTTTTATTCATTT+TGG | + | chr5.3:2000392-2000411 | MS.gene40498:intron | 25.0% |
| !!! | GTTTTATTCATTTTGGAACT+TGG | + | chr5.3:2000399-2000418 | MS.gene40498:intron | 25.0% |
| AAATTTGCAAACATAGCCTT+AGG | + | chr5.3:1999740-1999759 | MS.gene40498:intron | 30.0% | |
| AAGAGAGTAGATCAGATAAA+TGG | + | chr5.3:1999127-1999146 | MS.gene40498:intron | 30.0% | |
| AAGGAACTCAAACATTGTAT+TGG | - | chr5.3:1999600-1999619 | None:intergenic | 30.0% | |
| AATAAATCAGCATCTGATCT+TGG | + | chr5.3:2000846-2000865 | MS.gene40498:intron | 30.0% | |
| AATATATCAAACAACCATCC+AGG | - | chr5.3:2000350-2000369 | None:intergenic | 30.0% | |
| AATCAAACCTGGTAAGAAAT+AGG | + | chr5.3:2001636-2001655 | MS.gene40498:intron | 30.0% | |
| AATTGATGTTCCTATGTAAG+TGG | + | chr5.3:2000312-2000331 | MS.gene40498:intron | 30.0% | |
| AGAAAATCCTGTTAATCTGA+AGG | + | chr5.3:2001313-2001332 | MS.gene40498:intron | 30.0% | |
| AGGTAGAGAATCTATTAAGA+AGG | + | chr5.3:1999164-1999183 | MS.gene40498:intron | 30.0% | |
| ATATGGTACAAACTAGACTT+AGG | + | chr5.3:1999062-1999081 | MS.gene40498:intron | 30.0% | |
| ATATTATTGCTCGAAGGATT+TGG | + | chr5.3:2001161-2001180 | MS.gene40498:CDS | 30.0% | |
| ATCTTCTTCATCTTCTTGAA+GGG | + | chr5.3:2000499-2000518 | MS.gene40498:CDS | 30.0% | |
| ATTAGACACACAGAAGAAAT+TGG | - | chr5.3:2000218-2000237 | None:intergenic | 30.0% | |
| CAAATATGCAATACAAAGCT+TGG | + | chr5.3:2000568-2000587 | MS.gene40498:CDS | 30.0% | |
| CTATGTTTGCAAATTTGGAA+GGG | - | chr5.3:1999736-1999755 | None:intergenic | 30.0% | |
| CTCAAAAATTGTATCACAAC+TGG | + | chr5.3:1999899-1999918 | MS.gene40498:intron | 30.0% | |
| CTTCAAATACAGTTCTACTA+CGG | - | chr5.3:2000901-2000920 | None:intergenic | 30.0% | |
| GAAGCTGATTGTCATATTTA+AGG | - | chr5.3:2000243-2000262 | None:intergenic | 30.0% | |
| GATTATACAGTGTAAACGTA+AGG | + | chr5.3:2001513-2001532 | MS.gene40498:intron | 30.0% | |
| GTATTTAATGTACACTGACA+TGG | + | chr5.3:2001087-2001106 | MS.gene40498:intron | 30.0% | |
| TAAGGCTATGTTTGCAAATT+TGG | - | chr5.3:1999741-1999760 | None:intergenic | 30.0% | |
| TACAAAATACCCTAATTTGG+AGG | + | chr5.3:1999874-1999893 | MS.gene40498:intron | 30.0% | |
| TTAATCTTCAATGTTGTAGG+GGG | + | chr5.3:2001546-2001565 | MS.gene40498:intron | 30.0% | |
| TTGGATATCCTTTCTATTTG+AGG | + | chr5.3:2000698-2000717 | MS.gene40498:intron | 30.0% | |
| TTGGTTATTGCACATACATT+AGG | + | chr5.3:2000418-2000437 | MS.gene40498:intron | 30.0% | |
| ! | AATTTGCAAACATAGCCTTA+GGG | + | chr5.3:1999741-1999760 | MS.gene40498:intron | 30.0% |
| ! | AGCTTCTTTTTACTGTAACA+TGG | + | chr5.3:2000257-2000276 | MS.gene40498:intron | 30.0% |
| ! | ATTGTATCACAACTGGATTT+TGG | + | chr5.3:1999906-1999925 | MS.gene40498:intron | 30.0% |
| ! | CAAGCTTTGTATTGCATATT+TGG | - | chr5.3:2000570-2000589 | None:intergenic | 30.0% |
| ! | TAATGAGTTGGATAAAGACA+TGG | + | chr5.3:1999197-1999216 | MS.gene40498:intron | 30.0% |
| ! | TATTGTTGTTGTTAAGGAAC+TGG | + | chr5.3:1999292-1999311 | MS.gene40498:intron | 30.0% |
| ! | TGTTCAATTTTCATCTTGTG+CGG | + | chr5.3:2000617-2000636 | MS.gene40498:intron | 30.0% |
| !! | AAGTTTTATCCCACTAAACA+GGG | - | chr5.3:1999266-1999285 | None:intergenic | 30.0% |
| !! | TAAAAGTGCCTCAAATAGAA+AGG | - | chr5.3:2000709-2000728 | None:intergenic | 30.0% |
| !! | TTTTCAGCATTTTTAGGAAC+TGG | + | chr5.3:1998946-1998965 | MS.gene40498:intron | 30.0% |
| !!! | TTTTGAGTTCCTCCAAATTA+GGG | - | chr5.3:1999886-1999905 | None:intergenic | 30.0% |
| !!! | TTTTTGAGTTCCTCCAAATT+AGG | - | chr5.3:1999887-1999906 | None:intergenic | 30.0% |
| AAACTAGACTTAGGTGGTTT+GGG | + | chr5.3:1999071-1999090 | MS.gene40498:intron | 35.0% | |
| AAATGGAGTCAAATCACTAG+AGG | + | chr5.3:1999144-1999163 | MS.gene40498:intron | 35.0% | |
| AATAGAGAAAGCAGAAAGAG+CGG | - | chr5.3:1998668-1998687 | None:intergenic | 35.0% | |
| ACAATTGATGTCCCATTATG+AGG | - | chr5.3:2001022-2001041 | None:intergenic | 35.0% | |
| ACGAATGTTTCCGTTATTGA+AGG | - | chr5.3:1998469-1998488 | None:intergenic | 35.0% | |
| ACTCTCAAACAAAGCCTAAA+AGG | - | chr5.3:1999430-1999449 | None:intergenic | 35.0% | |
| AGATCCTACACATAGAATCA+CGG | - | chr5.3:2000191-2000210 | None:intergenic | 35.0% | |
| ATTAGAGAGATAGAGAGAGT+TGG | + | chr5.3:1999016-1999035 | MS.gene40498:intron | 35.0% | |
| CAAGTTTCGTTTCTTATGGA+CGG | + | chr5.3:1998600-1998619 | MS.gene40498:CDS | 35.0% | |
| CAATTGATGTCCCATTATGA+GGG | - | chr5.3:2001021-2001040 | None:intergenic | 35.0% | |
| CATCTTCTTCATCTTCTTGA+AGG | + | chr5.3:2000498-2000517 | MS.gene40498:CDS | 35.0% | |
| CCAAAAGATGTTGCAAAGTT+AGG | + | chr5.3:2001814-2001833 | MS.gene40498:CDS | 35.0% | |
| CTCTTTACTACAGAATCCAA+AGG | - | chr5.3:1999112-1999131 | None:intergenic | 35.0% | |
| GCTATGTTTGCAAATTTGGA+AGG | - | chr5.3:1999737-1999756 | None:intergenic | 35.0% | |
| GGATCTAGAGATTAATGAGT+TGG | + | chr5.3:1999185-1999204 | MS.gene40498:intron | 35.0% | |
| GGGAATATATTATTGCTCGA+AGG | + | chr5.3:2001155-2001174 | MS.gene40498:CDS | 35.0% | |
| TATTGCACATACATTAGGTC+CGG | + | chr5.3:2000423-2000442 | MS.gene40498:intron | 35.0% | |
| TCTCTATTTGTCGCAGATAT+TGG | + | chr5.3:1998680-1998699 | MS.gene40498:CDS | 35.0% | |
| TCTGTTTGAGAGTTTAGGAA+GGG | + | chr5.3:1999764-1999783 | MS.gene40498:intron | 35.0% | |
| TTACCCAACTAGAAAAGTAG+AGG | - | chr5.3:2001618-2001637 | None:intergenic | 35.0% | |
| TTAGAGAGATAGAGAGAGTT+GGG | + | chr5.3:1999017-1999036 | MS.gene40498:intron | 35.0% | |
| TTATCTCGTTTCTTTCCCAA+TGG | + | chr5.3:2001262-2001281 | MS.gene40498:intron | 35.0% | |
| TTCCATATTTGACACCCAAA+AGG | + | chr5.3:2000767-2000786 | MS.gene40498:intron | 35.0% | |
| TTTGCAAATTTGGAAGGGAA+GGG | - | chr5.3:1999731-1999750 | None:intergenic | 35.0% | |
| TTTGGAAAAAAGGAAGAAGC+AGG | - | chr5.3:1999698-1999717 | None:intergenic | 35.0% | |
| ! | AACTTTGCCTATTTCTTACC+AGG | - | chr5.3:2001646-2001665 | None:intergenic | 35.0% |
| ! | ATGATGATTTTCGTCCCAAA+TGG | + | chr5.3:2000957-2000976 | MS.gene40498:CDS | 35.0% |
| ! | CAAAAATAAGGAGAAAGTGC+TGG | + | chr5.3:1998711-1998730 | MS.gene40498:CDS | 35.0% |
| ! | CCTAACTTTGCAACATCTTT+TGG | - | chr5.3:2001817-2001836 | None:intergenic | 35.0% |
| ! | CTTTGTTTGAGAGTTTGAAG+GGG | + | chr5.3:1999436-1999455 | MS.gene40498:intron | 35.0% |
| ! | GACTATGTAATGAGCCTTTT+GGG | - | chr5.3:2000784-2000803 | None:intergenic | 35.0% |
| ! | GATTGACTGGCAAAGTTTTA+TGG | + | chr5.3:2000533-2000552 | MS.gene40498:CDS | 35.0% |
| ! | GTTTGAGTTCCTTCAAAGTA+GGG | + | chr5.3:1999607-1999626 | MS.gene40498:intron | 35.0% |
| ! | TAGGAACTGGTTTATATGTG+TGG | + | chr5.3:1998959-1998978 | MS.gene40498:intron | 35.0% |
| ! | TATCACAACTGGATTTTGGA+GGG | + | chr5.3:1999910-1999929 | MS.gene40498:intron | 35.0% |
| ! | TGACTATGTAATGAGCCTTT+TGG | - | chr5.3:2000785-2000804 | None:intergenic | 35.0% |
| ! | TGATGATTTTCGTCCCAAAT+GGG | + | chr5.3:2000958-2000977 | MS.gene40498:CDS | 35.0% |
| ! | TGTTTGAGTTCCTTCAAAGT+AGG | + | chr5.3:1999606-1999625 | MS.gene40498:intron | 35.0% |
| ! | TTTGAGTTCCTTCAAAGTAG+GGG | + | chr5.3:1999608-1999627 | MS.gene40498:intron | 35.0% |
| ! | TTTTCTGACAACACATACAC+AGG | - | chr5.3:2001479-2001498 | None:intergenic | 35.0% |
| ! | TTTTTACTTCGCTGCCTTTT+AGG | + | chr5.3:1999413-1999432 | MS.gene40498:intron | 35.0% |
| !! | ACTGGCAAAGTTTTATGGAA+AGG | + | chr5.3:2000538-2000557 | MS.gene40498:CDS | 35.0% |
| !! | CAAGTTTTATCCCACTAAAC+AGG | - | chr5.3:1999267-1999286 | None:intergenic | 35.0% |
| !! | CTTTTCTAGTGACAGAAGAA+TGG | - | chr5.3:2001295-2001314 | None:intergenic | 35.0% |
| !! | GCTTTGTTTGAGAGTTTGAA+GGG | + | chr5.3:1999435-1999454 | MS.gene40498:intron | 35.0% |
| !! | TAGACCTCTACTTTTCTAGT+TGG | + | chr5.3:2001611-2001630 | MS.gene40498:CDS | 35.0% |
| !! | TGTCTAGTATTGACATGTGA+TGG | + | chr5.3:1998906-1998925 | MS.gene40498:intron | 35.0% |
| !!! | AGACCTCTACTTTTCTAGTT+GGG | + | chr5.3:2001612-2001631 | MS.gene40498:CDS | 35.0% |
| AAACTCTCAAACAGACCCTA+AGG | - | chr5.3:1999759-1999778 | None:intergenic | 40.0% | |
| AAGAAATCCCTCACTAACTC+AGG | - | chr5.3:2000932-2000951 | None:intergenic | 40.0% | |
| AATGCTGCAACCATACTCTA+AGG | - | chr5.3:2000116-2000135 | None:intergenic | 40.0% | |
| ACAACCAGGCTTTCTTCTAA+TGG | + | chr5.3:2001952-2001971 | MS.gene40498:CDS | 40.0% | |
| AGACAAGGATACAGTTACAG+AGG | + | chr5.3:2000464-2000483 | MS.gene40498:CDS | 40.0% | |
| AGGAATAGAAGACTTCGGAA+TGG | - | chr5.3:1999671-1999690 | None:intergenic | 40.0% | |
| AGTTAGTGAGGGATTTCTTC+TGG | + | chr5.3:2000933-2000952 | MS.gene40498:CDS | 40.0% | |
| ATACATTAGGTCCGGTGATA+TGG | + | chr5.3:2000431-2000450 | MS.gene40498:intron | 40.0% | |
| ATGGGACATCAATTGTTCAC+TGG | + | chr5.3:2001026-2001045 | MS.gene40498:CDS | 40.0% | |
| CAAACTAGACTTAGGTGGTT+TGG | + | chr5.3:1999070-1999089 | MS.gene40498:intron | 40.0% | |
| CATCTTCTTGAAGGGAAAGA+TGG | + | chr5.3:2000507-2000526 | MS.gene40498:CDS | 40.0% | |
| CATGTCTTCGTGATGCAAAA+GGG | - | chr5.3:2001788-2001807 | None:intergenic | 40.0% | |
| CTAGAAGTGACCACTTACAT+AGG | - | chr5.3:2000325-2000344 | None:intergenic | 40.0% | |
| GAAAGAAAGGAAGGATGAAG+TGG | + | chr5.3:1999795-1999814 | MS.gene40498:intron | 40.0% | |
| GATGAAGTGGAAGGAATGAA+GGG | + | chr5.3:1999808-1999827 | MS.gene40498:intron | 40.0% | |
| GCATGTAGAGAGATAACCTT+TGG | + | chr5.3:1999093-1999112 | MS.gene40498:intron | 40.0% | |
| GGAATAGAAGACTTCGGAAT+GGG | - | chr5.3:1999670-1999689 | None:intergenic | 40.0% | |
| GGAGCAAGTTTCGTTTCTTA+TGG | + | chr5.3:1998596-1998615 | MS.gene40498:CDS | 40.0% | |
| GTCTGTTTGAGAGTTTAGGA+AGG | + | chr5.3:1999763-1999782 | MS.gene40498:intron | 40.0% | |
| GTGGAAGGAATAGAAGACTT+CGG | - | chr5.3:1999676-1999695 | None:intergenic | 40.0% | |
| GTTAGTGAGGGATTTCTTCT+GGG | + | chr5.3:2000934-2000953 | MS.gene40498:CDS | 40.0% | |
| GTTAGTGCCTTCAGATTAAC+AGG | - | chr5.3:2001323-2001342 | None:intergenic | 40.0% | |
| GTTTCCATTAGAAGAAAGCC+TGG | - | chr5.3:2001959-2001978 | None:intergenic | 40.0% | |
| GTTTGCAAATTTGGAAGGGA+AGG | - | chr5.3:1999732-1999751 | None:intergenic | 40.0% | |
| TACAGTTACAGAGGCTGATT+TGG | + | chr5.3:2000473-2000492 | MS.gene40498:CDS | 40.0% | |
| TAGAGAGATAGAGAGAGTTG+GGG | + | chr5.3:1999018-1999037 | MS.gene40498:intron | 40.0% | |
| TAGGGTCTGTTTGAGAGTTT+AGG | + | chr5.3:1999759-1999778 | MS.gene40498:intron | 40.0% | |
| TCAAAATCCCCCTACTTTGA+AGG | - | chr5.3:1999619-1999638 | None:intergenic | 40.0% | |
| TCAGAACACGAATTGGAAGA+AGG | - | chr5.3:1998739-1998758 | None:intergenic | 40.0% | |
| TCTAGTTGGGTAATCAAACC+TGG | + | chr5.3:2001625-2001644 | MS.gene40498:CDS | 40.0% | |
| TGATGGCAAGTAAAACAACC+AGG | + | chr5.3:2001938-2001957 | MS.gene40498:CDS | 40.0% | |
| TGCATACTACTGTGTGACAA+AGG | + | chr5.3:2001195-2001214 | MS.gene40498:CDS | 40.0% | |
| TGCGGATATTGTCTGTAATC+TGG | + | chr5.3:2000635-2000654 | MS.gene40498:intron | 40.0% | |
| TGGAAACTTGCATTCGTTAG+AGG | + | chr5.3:2001972-2001991 | MS.gene40498:CDS | 40.0% | |
| TGGTACAAACTAGACTTAGG+TGG | + | chr5.3:1999065-1999084 | MS.gene40498:intron | 40.0% | |
| TTCTAGTGACAGAAGAATGG+AGG | - | chr5.3:2001292-2001311 | None:intergenic | 40.0% | |
| TTGAGTTCCTTCAAAGTAGG+GGG | + | chr5.3:1999609-1999628 | MS.gene40498:intron | 40.0% | |
| ! | AAGGGAGGACTTTGAAAGAA+AGG | + | chr5.3:1999782-1999801 | MS.gene40498:intron | 40.0% |
| ! | ATGCGTTTTTGATGGAAGAG+AGG | + | chr5.3:2001995-2002014 | MS.gene40498:CDS | 40.0% |
| ! | CATCTGTTTTCCTAGCATTC+TGG | - | chr5.3:2001897-2001916 | None:intergenic | 40.0% |
| ! | CTTGGAGCTTTTAACAGACA+GGG | + | chr5.3:2000864-2000883 | MS.gene40498:intron | 40.0% |
| ! | CTTTTGCATCACGAAGACAT+GGG | + | chr5.3:2001787-2001806 | MS.gene40498:CDS | 40.0% |
| ! | GAGGACTTTGAAAGAAAGGA+AGG | + | chr5.3:1999786-1999805 | MS.gene40498:intron | 40.0% |
| ! | GTATCACAACTGGATTTTGG+AGG | + | chr5.3:1999909-1999928 | MS.gene40498:intron | 40.0% |
| ! | GTTAGAGGATGCGTTTTTGA+TGG | + | chr5.3:2001987-2002006 | MS.gene40498:CDS | 40.0% |
| ! | TCTTGGAGCTTTTAACAGAC+AGG | + | chr5.3:2000863-2000882 | MS.gene40498:intron | 40.0% |
| ! | TGCGTTTTTGATGGAAGAGA+GGG | + | chr5.3:2001996-2002015 | MS.gene40498:CDS | 40.0% |
| ! | TTGGAGCTTTTAACAGACAG+GGG | + | chr5.3:2000865-2000884 | MS.gene40498:intron | 40.0% |
| ! | TTTTGCATCACGAAGACATG+GGG | + | chr5.3:2001788-2001807 | MS.gene40498:CDS | 40.0% |
| !! | AACTGGATTTTGGAGGGTTT+TGG | + | chr5.3:1999916-1999935 | MS.gene40498:intron | 40.0% |
| !! | AGCCTTTTGGGTGTCAAATA+TGG | - | chr5.3:2000772-2000791 | None:intergenic | 40.0% |
| !! | CATACTCTAAGGCTTGGTTT+GGG | - | chr5.3:2000105-2000124 | None:intergenic | 40.0% |
| !! | CGTCGATATTTTGCTATGTG+CGG | + | chr5.3:1998486-1998505 | MS.gene40498:CDS | 40.0% |
| !! | CGTTTTGGCAAACTTGGATA+GGG | - | chr5.3:2001574-2001593 | None:intergenic | 40.0% |
| !! | GGCTTTGTTTGAGAGTTTGA+AGG | + | chr5.3:1999434-1999453 | MS.gene40498:intron | 40.0% |
| !! | TTATCGCGTTTTGGCAAACT+TGG | - | chr5.3:2001580-2001599 | None:intergenic | 40.0% |
| !!! | AAGGAATGAAGGGTTTTGAG+AGG | + | chr5.3:1999818-1999837 | MS.gene40498:intron | 40.0% |
| !!! | AGGAATGAAGGGTTTTGAGA+GGG | + | chr5.3:1999819-1999838 | MS.gene40498:intron | 40.0% |
| AAAAGGAAGAAGCAGGTGGA+AGG | - | chr5.3:1999691-1999710 | None:intergenic | 45.0% | |
| AAATTTGGAAGGGAAGGGAG+GGG | - | chr5.3:1999726-1999745 | None:intergenic | 45.0% | |
| AAGACCGATGAAGAGAAGTC+CGG | - | chr5.3:1998575-1998594 | None:intergenic | 45.0% | |
| AGTGTGCGAAATTGATGCAG+TGG | + | chr5.3:2001720-2001739 | MS.gene40498:intron | 45.0% | |
| AGTTTGGAGGGGAGATTAGA+GGG | - | chr5.3:2000082-2000101 | None:intergenic | 45.0% | |
| ATAGAAGACTTCGGAATGGG+AGG | - | chr5.3:1999667-1999686 | None:intergenic | 45.0% | |
| ATCAACAATGCCCGACAGAT+TGG | + | chr5.3:2002027-2002046 | MS.gene40498:CDS | 45.0% | |
| ATCATGACCGCAAGCCAAAT+CGG | - | chr5.3:1998514-1998533 | None:intergenic | 45.0% | |
| ATGCAACTCCTGAGTTAGTG+AGG | + | chr5.3:2000921-2000940 | MS.gene40498:CDS | 45.0% | |
| CAAATTTGGAAGGGAAGGGA+GGG | - | chr5.3:1999727-1999746 | None:intergenic | 45.0% | |
| CCAAACCAAGCCTTAGAGTA+TGG | + | chr5.3:2000103-2000122 | MS.gene40498:intron | 45.0% | |
| CCATGTCTTCGTGATGCAAA+AGG | - | chr5.3:2001789-2001808 | None:intergenic | 45.0% | |
| CTGCAGAAAAAGGGGAACTA+TGG | - | chr5.3:2001130-2001149 | None:intergenic | 45.0% | |
| GAAAGGAAGGATGAAGTGGA+AGG | + | chr5.3:1999799-1999818 | MS.gene40498:intron | 45.0% | |
| GACTTCTCTTCATCGGTCTT+CGG | + | chr5.3:1998575-1998594 | MS.gene40498:CDS | 45.0% | |
| GCTGTCAAGAAATTGCACTC+TGG | + | chr5.3:2001859-2001878 | MS.gene40498:CDS | 45.0% | |
| GGAAAAAAGGAAGAAGCAGG+TGG | - | chr5.3:1999695-1999714 | None:intergenic | 45.0% | |
| GGAAAGATGGAGAGATTGAC+TGG | + | chr5.3:2000520-2000539 | MS.gene40498:CDS | 45.0% | |
| GGATGAAGTGGAAGGAATGA+AGG | + | chr5.3:1999807-1999826 | MS.gene40498:intron | 45.0% | |
| GTATACACAGTGGTGCAGTA+GGG | + | chr5.3:2002106-2002125 | MS.gene40498:CDS | 45.0% | |
| GTTTGAGAGTTTAGGAAGGG+AGG | + | chr5.3:1999767-1999786 | MS.gene40498:intron | 45.0% | |
| GTTTGAGAGTTTGAAGGGGA+GGG | + | chr5.3:1999440-1999459 | MS.gene40498:intron | 45.0% | |
| TAGAAGACTTCGGAATGGGA+GGG | - | chr5.3:1999666-1999685 | None:intergenic | 45.0% | |
| TATTGCTCGAAGGATTTGGC+AGG | + | chr5.3:2001165-2001184 | MS.gene40498:CDS | 45.0% | |
| TCCCGATCACTGCAGAAAAA+GGG | - | chr5.3:2001139-2001158 | None:intergenic | 45.0% | |
| TGCAACTCCTGAGTTAGTGA+GGG | + | chr5.3:2000922-2000941 | MS.gene40498:CDS | 45.0% | |
| TGGAATCTCGCAAAGGAGAT+GGG | + | chr5.3:2001740-2001759 | MS.gene40498:CDS | 45.0% | |
| TGGAGGAATGCCCTCATAAT+GGG | + | chr5.3:2001008-2001027 | MS.gene40498:CDS | 45.0% | |
| TGTTTGAGAGTTTGAAGGGG+AGG | + | chr5.3:1999439-1999458 | MS.gene40498:intron | 45.0% | |
| TTCCCGATCACTGCAGAAAA+AGG | - | chr5.3:2001140-2001159 | None:intergenic | 45.0% | |
| TTCGCCGTGATTCTATGTGT+AGG | + | chr5.3:2000184-2000203 | MS.gene40498:intron | 45.0% | |
| TTGGAGGAATGCCCTCATAA+TGG | + | chr5.3:2001007-2001026 | MS.gene40498:CDS | 45.0% | |
| TTTGTCGAGATGTGCGTTGA+TGG | + | chr5.3:2001921-2001940 | MS.gene40498:CDS | 45.0% | |
| ! | AAGAATGGAGGCTAGCCATT+GGG | - | chr5.3:2001280-2001299 | None:intergenic | 45.0% |
| ! | AATCTGTCGGGCATTGTTGA+TGG | - | chr5.3:2002028-2002047 | None:intergenic | 45.0% |
| ! | CCTTTTGCATCACGAAGACA+TGG | + | chr5.3:2001786-2001805 | MS.gene40498:CDS | 45.0% |
| ! | GAATTACCGAGAAGCGTGTT+TGG | - | chr5.3:1998779-1998798 | None:intergenic | 45.0% |
| ! | TCCCCTTTTTCTGCAGTGAT+CGG | + | chr5.3:2001134-2001153 | MS.gene40498:CDS | 45.0% |
| ! | TGAGAGCATACCAGAATGCT+AGG | + | chr5.3:2001884-2001903 | MS.gene40498:CDS | 45.0% |
| !! | AAGTGGTCACTTCTAGTTCC+TGG | + | chr5.3:2000329-2000348 | MS.gene40498:intron | 45.0% |
| !! | ATTTGGCTTGCGGTCATGAT+CGG | + | chr5.3:1998514-1998533 | MS.gene40498:CDS | 45.0% |
| !! | CCATACTCTAAGGCTTGGTT+TGG | - | chr5.3:2000106-2000125 | None:intergenic | 45.0% |
| !! | GATTTTGGAGGGTTTTGGTG+TGG | + | chr5.3:1999921-1999940 | MS.gene40498:intron | 45.0% |
| !! | GCGTTTTGGCAAACTTGGAT+AGG | - | chr5.3:2001575-2001594 | None:intergenic | 45.0% |
| !! | GTCATGATCGGTTTGGTGAT+CGG | + | chr5.3:1998526-1998545 | MS.gene40498:CDS | 45.0% |
| !! | TAAGGCTTGGTTTGGGAGTT+TGG | - | chr5.3:2000098-2000117 | None:intergenic | 45.0% |
| !! | TGCAACCATACTCTAAGGCT+TGG | - | chr5.3:2000111-2000130 | None:intergenic | 45.0% |
| !!! | GGAATGAAGGGTTTTGAGAG+GGG | + | chr5.3:1999820-1999839 | MS.gene40498:intron | 45.0% |
| !!! | GTGGTTTTGGGTATACACAG+TGG | + | chr5.3:2002096-2002115 | MS.gene40498:CDS | 45.0% |
| !!! | TACAAATAAATAATTTTTTT+TGG | + | chr5.3:2000679-2000698 | MS.gene40498:intron | 5.0% |
| AAAGTAGAGGTCTACGCGTC+TGG | - | chr5.3:2001605-2001624 | None:intergenic | 50.0% | |
| AAGTAGAGGTCTACGCGTCT+GGG | - | chr5.3:2001604-2001623 | None:intergenic | 50.0% | |
| ACGCTACCAAACACGCTTCT+CGG | + | chr5.3:1998770-1998789 | MS.gene40498:CDS | 50.0% | |
| ACTTTGCAGTGTGCGAGCAT+AGG | - | chr5.3:2000986-2001005 | None:intergenic | 50.0% | |
| AGCTTGGCGTTATGACTCTG+AGG | + | chr5.3:2000584-2000603 | MS.gene40498:CDS | 50.0% | |
| AGGAGTTCGCCATGGAATGT+GGG | + | chr5.3:2001834-2001853 | MS.gene40498:CDS | 50.0% | |
| ATGCAGCTGACCCTGTTTAG+TGG | + | chr5.3:1999253-1999272 | MS.gene40498:intron | 50.0% | |
| CCCGATCACTGCAGAAAAAG+GGG | - | chr5.3:2001138-2001157 | None:intergenic | 50.0% | |
| GAGCAGGGCATAGATTTGCA+CGG | + | chr5.3:2002145-2002164 | MS.gene40498:CDS | 50.0% | |
| GAGTTTGGAGGGGAGATTAG+AGG | - | chr5.3:2000083-2000102 | None:intergenic | 50.0% | |
| GATGCAGTGGAATCTCGCAA+AGG | + | chr5.3:2001733-2001752 | MS.gene40498:intron | 50.0% | |
| GCAAAGTTAGGAGTTCGCCA+TGG | + | chr5.3:2001826-2001845 | MS.gene40498:CDS | 50.0% | |
| GCAAATTTGGAAGGGAAGGG+AGG | - | chr5.3:1999728-1999747 | None:intergenic | 50.0% | |
| GCGAGCATAGGATCCCATTT+GGG | - | chr5.3:2000974-2000993 | None:intergenic | 50.0% | |
| GGCGTCATCAGAACACGAAT+TGG | - | chr5.3:1998746-1998765 | None:intergenic | 50.0% | |
| GGTATACACAGTGGTGCAGT+AGG | + | chr5.3:2002105-2002124 | MS.gene40498:CDS | 50.0% | |
| GTGGAATCTCGCAAAGGAGA+TGG | + | chr5.3:2001739-2001758 | MS.gene40498:intron | 50.0% | |
| GTTTGGAGGGGAGATTAGAG+GGG | - | chr5.3:2000081-2000100 | None:intergenic | 50.0% | |
| TAGGAGTTCGCCATGGAATG+TGG | + | chr5.3:2001833-2001852 | MS.gene40498:CDS | 50.0% | |
| TATGGCTGACGAGAGAGACA+AGG | + | chr5.3:2000449-2000468 | MS.gene40498:CDS | 50.0% | |
| TCTCTCGTCAGCCATATCAC+CGG | - | chr5.3:2000445-2000464 | None:intergenic | 50.0% | |
| TGCAGCTGACCCTGTTTAGT+GGG | + | chr5.3:1999254-1999273 | MS.gene40498:intron | 50.0% | |
| TGCGAGCATAGGATCCCATT+TGG | - | chr5.3:2000975-2000994 | None:intergenic | 50.0% | |
| TGCTATGTGCGGTTCCGATT+TGG | + | chr5.3:1998497-1998516 | MS.gene40498:CDS | 50.0% | |
| TGGACCGGACTTCTCTTCAT+CGG | + | chr5.3:1998568-1998587 | MS.gene40498:CDS | 50.0% | |
| TTTCTTATGGACGGTTCCGC+CGG | + | chr5.3:1998609-1998628 | MS.gene40498:CDS | 50.0% | |
| ! | AATGCCCGACAGATTGGTCA+CGG | + | chr5.3:2002033-2002052 | MS.gene40498:CDS | 50.0% |
| ! | AGTAGGGCGAGCATTGTTGT+TGG | + | chr5.3:2002122-2002141 | MS.gene40498:CDS | 50.0% |
| ! | CCCCTTTTTCTGCAGTGATC+GGG | + | chr5.3:2001135-2001154 | MS.gene40498:CDS | 50.0% |
| ! | GAAGAATGGAGGCTAGCCAT+TGG | - | chr5.3:2001281-2001300 | None:intergenic | 50.0% |
| ! | GAGCATTGTTGTTGGGAGCA+GGG | + | chr5.3:2002130-2002149 | MS.gene40498:CDS | 50.0% |
| ! | GGGACTGTTGCTGTGGTTTT+GGG | + | chr5.3:2002084-2002103 | MS.gene40498:CDS | 50.0% |
| ! | GTAGGGCGAGCATTGTTGTT+GGG | + | chr5.3:2002123-2002142 | MS.gene40498:CDS | 50.0% |
| ! | GTTTGGTGATCGGTTGGTCA+TGG | + | chr5.3:1998536-1998555 | MS.gene40498:CDS | 50.0% |
| ! | TGGGACTGTTGCTGTGGTTT+TGG | + | chr5.3:2002083-2002102 | MS.gene40498:CDS | 50.0% |
| !! | AGAAGCGTGTTTGGTAGCGT+CGG | - | chr5.3:1998770-1998789 | None:intergenic | 50.0% |
| !! | AGGGGAGGGCTTTGGAAAAA+AGG | - | chr5.3:1999708-1999727 | None:intergenic | 50.0% |
| !! | CTTGGTTTGGGAGTTTGGAG+GGG | - | chr5.3:2000093-2000112 | None:intergenic | 50.0% |
| !! | GCTTGGTTTGGGAGTTTGGA+GGG | - | chr5.3:2000094-2000113 | None:intergenic | 50.0% |
| !! | GGTCACTTCTAGTTCCTGGA+TGG | + | chr5.3:2000333-2000352 | MS.gene40498:intron | 50.0% |
| !! | TGATCGGTTTGGTGATCGGT+TGG | + | chr5.3:1998530-1998549 | MS.gene40498:CDS | 50.0% |
| !! | TTTTGAGAGGGGAGGGCTTT+GGG | + | chr5.3:1999831-1999850 | MS.gene40498:intron | 50.0% |
| !!! | ATGAAGGGTTTTGAGAGGGG+AGG | + | chr5.3:1999823-1999842 | MS.gene40498:intron | 50.0% |
| !!! | TGAAGGGTTTTGAGAGGGGA+GGG | + | chr5.3:1999824-1999843 | MS.gene40498:intron | 50.0% |
| ACTTCGGAATGGGAGGGCTT+TGG | - | chr5.3:1999660-1999679 | None:intergenic | 55.0% | |
| AGAGTTTGAAGGGGAGGGTG+AGG | + | chr5.3:1999445-1999464 | MS.gene40498:intron | 55.0% | |
| CACAGCAACAGTCCCACCTA+AGG | - | chr5.3:2002079-2002098 | None:intergenic | 55.0% | |
| CGGTGAACGCTAACCAGAGA+CGG | - | chr5.3:1998648-1998667 | None:intergenic | 55.0% | |
| CTTAGGTGGGACTGTTGCTG+TGG | + | chr5.3:2002077-2002096 | MS.gene40498:CDS | 55.0% | |
| GAGTTTGAAGGGGAGGGTGA+GGG | + | chr5.3:1999446-1999465 | MS.gene40498:intron | 55.0% | |
| GATTGGAAGTGGGTGGCCTT+AGG | + | chr5.3:2002060-2002079 | MS.gene40498:CDS | 55.0% | |
| GCTCGCACACTGCAAAGTGT+TGG | + | chr5.3:2000988-2001007 | MS.gene40498:CDS | 55.0% | |
| GCTTGCGGTCATGATCGGTT+TGG | + | chr5.3:1998519-1998538 | MS.gene40498:CDS | 55.0% | |
| GGAGTTCGCCATGGAATGTG+GGG | + | chr5.3:2001835-2001854 | MS.gene40498:CDS | 55.0% | |
| TGACAGCTCCCCACATTCCA+TGG | - | chr5.3:2001846-2001865 | None:intergenic | 55.0% | |
| TTCTTATGGACGGTTCCGCC+GGG | + | chr5.3:1998610-1998629 | MS.gene40498:CDS | 55.0% | |
| TTTGAGAGGGGAGGGCTTTG+GGG | + | chr5.3:1999832-1999851 | MS.gene40498:intron | 55.0% | |
| ! | AGATTGGTCACGGCCTGGAT+TGG | + | chr5.3:2002043-2002062 | MS.gene40498:CDS | 55.0% |
| ! | CGAGCATTGTTGTTGGGAGC+AGG | + | chr5.3:2002129-2002148 | MS.gene40498:CDS | 55.0% |
| ! | CGTCTGGGCTTATCGCGTTT+TGG | - | chr5.3:2001589-2001608 | None:intergenic | 55.0% |
| ! | CTTTGGGGGGAGAGGAATAG+AGG | + | chr5.3:1999469-1999488 | MS.gene40498:intron | 55.0% |
| ! | TCACGGCCTGGATTGGAAGT+GGG | + | chr5.3:2002050-2002069 | MS.gene40498:CDS | 55.0% |
| !! | CGCACACTGCAAAGTGTTGG+AGG | + | chr5.3:2000991-2001010 | MS.gene40498:CDS | 55.0% |
| !! | GGCTTGGTTTGGGAGTTTGG+AGG | - | chr5.3:2000095-2000114 | None:intergenic | 55.0% |
| !! | TGCGGTTCCGATTTGGCTTG+CGG | + | chr5.3:1998504-1998523 | MS.gene40498:CDS | 55.0% |
| !! | TGGAGGGTTTTGGTGTGGCT+TGG | + | chr5.3:1999926-1999945 | MS.gene40498:intron | 55.0% |
| !!! | GTTTTGAGAGGGGAGGGCTT+TGG | + | chr5.3:1999830-1999849 | MS.gene40498:intron | 55.0% |
| AAGAGAAGTCCGGTCCACCG+TGG | - | chr5.3:1998565-1998584 | None:intergenic | 60.0% | |
| AAGGGGAGGGTGAGGGCTTT+GGG | + | chr5.3:1999453-1999472 | MS.gene40498:intron | 60.0% | |
| AGGCCACCCACTTCCAATCC+AGG | - | chr5.3:2002059-2002078 | None:intergenic | 60.0% | |
| CAGGCCGTGACCAATCTGTC+GGG | - | chr5.3:2002040-2002059 | None:intergenic | 60.0% | |
| CCAGGCCGTGACCAATCTGT+CGG | - | chr5.3:2002041-2002060 | None:intergenic | 60.0% | |
| GCTCGAAGGATTTGGCAGGC+TGG | + | chr5.3:2001169-2001188 | MS.gene40498:CDS | 60.0% | |
| TGGGCAGTTGTCTGCATGCG+AGG | + | chr5.3:2001759-2001778 | MS.gene40498:CDS | 60.0% | |
| TTGGAAGGGAAGGGAGGGGA+GGG | - | chr5.3:1999722-1999741 | None:intergenic | 60.0% | |
| TTTGGAAGGGAAGGGAGGGG+AGG | - | chr5.3:1999723-1999742 | None:intergenic | 60.0% | |
| ! | GGAAGTGGGTGGCCTTAGGT+GGG | + | chr5.3:2002064-2002083 | MS.gene40498:CDS | 60.0% |
| ! | GTCACGGCCTGGATTGGAAG+TGG | + | chr5.3:2002049-2002068 | MS.gene40498:CDS | 60.0% |
| ! | TCGGTTGGTCATGGCGTCCA+CGG | + | chr5.3:1998545-1998564 | MS.gene40498:CDS | 60.0% |
| ! | TGGAAGTGGGTGGCCTTAGG+TGG | + | chr5.3:2002063-2002082 | MS.gene40498:CDS | 60.0% |
| !! | AGCGTGTTTGGTAGCGTCGG+TGG | - | chr5.3:1998767-1998786 | None:intergenic | 60.0% |
| !! | CGGAATGGGAGGGCTTTGGA+AGG | - | chr5.3:1999656-1999675 | None:intergenic | 60.0% |
| AGGGGAGGGTGAGGGCTTTG+GGG | + | chr5.3:1999454-1999473 | MS.gene40498:intron | 65.0% | |
| GAAGGGGAGGGTGAGGGCTT+TGG | + | chr5.3:1999452-1999471 | MS.gene40498:intron | 65.0% | |
| GTTGGTCATGGCGTCCACGG+TGG | + | chr5.3:1998548-1998567 | MS.gene40498:CDS | 65.0% | |
| TCATGGCGTCCACGGTGGAC+CGG | + | chr5.3:1998553-1998572 | MS.gene40498:CDS | 65.0% | |
| TGGACGGTTCCGCCGGGATT+CGG | + | chr5.3:1998616-1998635 | MS.gene40498:CDS | 65.0% | |
| ! | CCGACAGATTGGTCACGGCC+TGG | + | chr5.3:2002038-2002057 | MS.gene40498:CDS | 65.0% |
| ! | CGGCCTGGATTGGAAGTGGG+TGG | + | chr5.3:2002053-2002072 | MS.gene40498:CDS | 65.0% |
| !! | AGACGGCGAGCACCGAATCC+CGG | - | chr5.3:1998631-1998650 | None:intergenic | 65.0% |
| !! | GATTCGGTGCTCGCCGTCTC+TGG | + | chr5.3:1998632-1998651 | MS.gene40498:CDS | 65.0% |
| GGGAAGGGAGGGGAGGGCTT+TGG | - | chr5.3:1999716-1999735 | None:intergenic | 70.0% | |
| ! | GGGGAGGGTGAGGGCTTTGG+GGG | + | chr5.3:1999455-1999474 | MS.gene40498:intron | 70.0% |
| !! | GGGAGGGTGAGGGCTTTGGG+GGG | + | chr5.3:1999456-1999475 | MS.gene40498:intron | 70.0% |
| !! | GGTGAGGGCTTTGGGGGGAG+AGG | + | chr5.3:1999461-1999480 | MS.gene40498:intron | 70.0% |
| !! | CGGCGAGCACCGAATCCCGG+CGG | - | chr5.3:1998628-1998647 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 1998424 | 2002173 | 1998424 | ID=MS.gene40498 |
| chr5.3 | mRNA | 1998424 | 2002173 | 1998424 | ID=MS.gene40498.t1;Parent=MS.gene40498 |
| chr5.3 | exon | 1998424 | 1998791 | 1998424 | ID=MS.gene40498.t1.exon1;Parent=MS.gene40498.t1 |
| chr5.3 | CDS | 1998424 | 1998791 | 1998424 | ID=cds.MS.gene40498.t1;Parent=MS.gene40498.t1 |
| chr5.3 | exon | 2000440 | 2000605 | 2000440 | ID=MS.gene40498.t1.exon2;Parent=MS.gene40498.t1 |
| chr5.3 | CDS | 2000440 | 2000605 | 2000440 | ID=cds.MS.gene40498.t1;Parent=MS.gene40498.t1 |
| chr5.3 | exon | 2000881 | 2001057 | 2000881 | ID=MS.gene40498.t1.exon3;Parent=MS.gene40498.t1 |
| chr5.3 | CDS | 2000881 | 2001057 | 2000881 | ID=cds.MS.gene40498.t1;Parent=MS.gene40498.t1 |
| chr5.3 | exon | 2001133 | 2001216 | 2001133 | ID=MS.gene40498.t1.exon4;Parent=MS.gene40498.t1 |
| chr5.3 | CDS | 2001133 | 2001216 | 2001133 | ID=cds.MS.gene40498.t1;Parent=MS.gene40498.t1 |
| chr5.3 | exon | 2001565 | 2001646 | 2001565 | ID=MS.gene40498.t1.exon5;Parent=MS.gene40498.t1 |
| chr5.3 | CDS | 2001565 | 2001646 | 2001565 | ID=cds.MS.gene40498.t1;Parent=MS.gene40498.t1 |
| chr5.3 | exon | 2001740 | 2002173 | 2001740 | ID=MS.gene40498.t1.exon6;Parent=MS.gene40498.t1 |
| chr5.3 | CDS | 2001740 | 2002173 | 2001740 | ID=cds.MS.gene40498.t1;Parent=MS.gene40498.t1 |
| Gene Sequence |
| Protein sequence |
