AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene024879

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024879.t1 MTR_5g006180 95.455 572 12 1 1 572 1 558 0.0 1113
MS.gene024879.t1 MTR_5g090110 78.483 567 71 5 8 572 7 524 0.0 884
MS.gene024879.t1 MTR_4g115780 61.176 595 202 8 1 571 101 690 0.0 662
MS.gene024879.t1 MTR_4g107920 56.863 561 207 13 19 569 10 545 0.0 572
MS.gene024879.t1 MTR_7g024390 37.228 505 290 10 29 523 9 496 1.69e-98 313
MS.gene024879.t1 MTR_4g130540 36.853 502 296 10 29 523 8 495 3.50e-98 312
MS.gene024879.t1 MTR_7g024580 37.426 505 289 10 29 523 9 496 3.92e-98 312
MS.gene024879.t1 MTR_4g063720 36.634 505 293 10 29 523 9 496 1.52e-96 308
MS.gene024879.t1 MTR_7g099680 36.170 517 279 11 29 523 9 496 3.00e-96 307
MS.gene024879.t1 MTR_4g063710 36.832 505 292 10 29 523 9 496 3.44e-96 307
MS.gene024879.t1 MTR_4g103780 40.351 456 152 7 118 569 1 340 4.30e-93 289
MS.gene024879.t1 MTR_2g038260 35.317 521 293 14 29 530 9 504 6.25e-87 282
MS.gene024879.t1 MTR_7g025770 34.308 513 308 12 29 530 9 503 1.81e-86 280
MS.gene024879.t1 MTR_2g437440 35.798 514 300 12 29 530 9 504 2.80e-86 280
MS.gene024879.t1 MTR_8g032650 35.078 516 303 14 28 531 8 503 5.12e-86 280
MS.gene024879.t1 MTR_2g032550 35.897 507 295 13 29 523 10 498 2.80e-85 278
MS.gene024879.t1 MTR_7g451380 35.882 510 307 10 29 531 9 505 4.77e-85 277
MS.gene024879.t1 MTR_7g026170 35.882 510 304 13 29 530 9 503 1.59e-84 276
MS.gene024879.t1 MTR_7g025620 33.704 540 328 13 29 557 9 529 2.08e-84 275
MS.gene024879.t1 MTR_8g099945 33.779 524 298 12 19 523 29 522 1.34e-83 274
MS.gene024879.t1 MTR_7g026090 33.456 544 324 14 29 554 9 532 1.82e-83 273
MS.gene024879.t1 MTR_7g026110 34.291 522 316 13 28 539 8 512 3.53e-83 272
MS.gene024879.t1 MTR_8g099795 33.015 524 308 10 16 523 26 522 8.03e-83 272
MS.gene024879.t1 MTR_2g017730 33.138 513 306 11 29 523 8 501 1.11e-82 270
MS.gene024879.t1 MTR_7g025760 34.653 505 305 11 28 523 8 496 2.75e-82 270
MS.gene024879.t1 MTR_7g021440 35.714 504 299 11 29 523 9 496 8.24e-82 268
MS.gene024879.t1 MTR_7g074460 33.463 514 305 12 28 535 8 490 3.00e-81 266
MS.gene024879.t1 MTR_7g029415 35.340 515 299 17 29 530 16 509 3.77e-81 267
MS.gene024879.t1 MTR_5g066800 35.135 518 294 15 29 523 9 507 4.38e-80 264
MS.gene024879.t1 MTR_7g025820 33.789 512 314 11 29 531 9 504 1.06e-79 262
MS.gene024879.t1 MTR_2g022050 36.893 515 295 13 28 530 8 504 2.76e-79 261
MS.gene024879.t1 MTR_1g017130 33.595 509 277 15 29 530 9 463 8.03e-79 260
MS.gene024879.t1 MTR_7g026030 33.270 523 317 14 29 539 9 511 8.73e-79 260
MS.gene024879.t1 MTR_7g026130 35.271 516 298 17 29 529 9 503 1.74e-78 262
MS.gene024879.t1 MTR_7g025790 33.268 514 313 15 29 531 9 503 2.48e-78 259
MS.gene024879.t1 MTR_7g025720 33.465 508 306 11 28 523 8 495 1.78e-77 257
MS.gene024879.t1 MTR_2g038270 32.946 516 320 13 30 531 10 513 4.79e-77 256
MS.gene024879.t1 MTR_7g026140 35.283 513 287 16 29 530 9 487 5.66e-77 255
MS.gene024879.t1 MTR_4g079590 33.399 506 308 13 29 523 9 496 1.20e-75 252
MS.gene024879.t1 MTR_6g033850 31.898 511 308 11 27 521 7 493 2.11e-75 253
MS.gene024879.t1 MTR_7g025630 34.165 521 303 14 28 539 8 497 1.20e-74 249
MS.gene024879.t1 MTR_6g033760 32.495 517 301 14 27 523 7 495 1.85e-74 249
MS.gene024879.t1 MTR_7g025260 36.034 469 259 12 79 523 17 468 5.71e-74 247
MS.gene024879.t1 MTR_2g032580 33.140 516 301 13 28 532 8 490 1.95e-73 245
MS.gene024879.t1 MTR_7g078210 34.884 516 303 17 29 531 9 504 4.37e-73 245
MS.gene024879.t1 MTR_7g011590 33.333 510 304 12 29 530 9 490 5.92e-73 244
MS.gene024879.t1 MTR_7g024030 32.879 514 315 14 29 531 9 503 6.68e-73 244
MS.gene024879.t1 MTR_4g027145 33.333 519 317 14 29 530 9 515 7.58e-73 245
MS.gene024879.t1 MTR_8g103930 32.588 537 284 16 27 530 9 500 4.16e-72 243
MS.gene024879.t1 MTR_6g033955 32.277 505 319 12 27 521 7 498 1.97e-71 241
MS.gene024879.t1 MTR_6g033820 33.268 508 310 14 27 521 7 498 1.18e-70 240
MS.gene024879.t1 MTR_7g078190 33.786 515 311 16 29 531 9 505 1.28e-70 239
MS.gene024879.t1 MTR_2g010020 31.335 517 292 11 30 523 57 533 9.81e-70 238
MS.gene024879.t1 MTR_2g010020 31.335 517 292 11 30 523 58 534 9.99e-70 238
MS.gene024879.t1 MTR_4g092920 29.433 547 314 12 5 523 29 531 7.39e-69 235
MS.gene024879.t1 MTR_6g033870 32.759 522 295 16 27 521 8 500 1.11e-68 235
MS.gene024879.t1 MTR_7g025740 32.039 515 313 12 28 523 8 504 1.69e-68 234
MS.gene024879.t1 MTR_7g451360 33.268 511 260 13 29 531 9 446 5.81e-66 225
MS.gene024879.t1 MTR_7g007000 32.427 515 272 18 29 530 9 460 6.25e-62 214
MS.gene024879.t1 MTR_2g005690 31.827 509 308 15 27 523 69 550 2.12e-61 216
MS.gene024879.t1 MTR_4g092920 32.570 393 234 7 141 523 26 397 5.78e-61 211
MS.gene024879.t1 MTR_6g033800 31.796 412 268 7 112 521 2 402 2.79e-60 210
MS.gene024879.t1 MTR_2g040160 33.753 397 233 12 29 414 1109 1486 1.73e-52 194
MS.gene024879.t1 MTR_2g032160 32.648 389 233 11 28 409 8 374 2.43e-51 183
MS.gene024879.t1 MTR_2g040370 32.836 402 224 10 29 411 1029 1403 2.73e-51 191
MS.gene024879.t1 MTR_2g040370 33.498 406 223 11 29 414 1413 1791 5.08e-50 187
MS.gene024879.t1 MTR_2g040370 32.836 402 224 10 29 411 1029 1403 3.18e-51 190
MS.gene024879.t1 MTR_2g040370 33.248 391 214 11 29 399 1413 1776 8.51e-50 186
MS.gene024879.t1 MTR_2g040220 32.398 392 239 11 30 410 1019 1395 7.20e-51 189
MS.gene024879.t1 MTR_2g040220 59.184 49 20 0 475 523 1399 1447 1.05e-11 68.6
MS.gene024879.t1 MTR_7g035155 31.128 514 269 19 29 530 9 449 3.61e-50 182
MS.gene024879.t1 MTR_4g063720 43.689 206 109 2 321 523 224 425 2.49e-48 177
MS.gene024879.t1 MTR_4g063720 32.287 223 141 4 29 250 9 222 4.52e-25 109
MS.gene024879.t1 MTR_2g040260 31.807 393 246 9 29 414 1038 1415 1.14e-47 179
MS.gene024879.t1 MTR_1g041565 29.175 497 266 15 29 521 5 419 1.84e-46 171
MS.gene024879.t1 MTR_2g040350 32.242 397 241 11 30 414 1039 1419 2.58e-46 176
MS.gene024879.t1 MTR_2g040350 32.242 397 241 11 30 414 821 1201 2.85e-46 175
MS.gene024879.t1 MTR_4g115870 42.000 250 76 7 92 338 57 240 2.12e-45 160
MS.gene024879.t1 MTR_4g115860 67.480 123 40 0 395 517 1 123 3.21e-45 156
MS.gene024879.t1 MTR_6g034005 29.384 422 273 10 104 521 4 404 1.18e-44 169
MS.gene024879.t1 MTR_7g026080 33.865 251 148 8 29 273 9 247 1.81e-35 134
MS.gene024879.t1 MTR_1g077230 31.944 288 173 9 29 307 9 282 1.15e-30 121
MS.gene024879.t1 MTR_7g026050 30.769 260 140 8 270 523 1 226 2.68e-28 116
MS.gene024879.t1 MTR_1g077240 36.216 185 113 3 348 531 3 183 2.64e-27 112
MS.gene024879.t1 MTR_2g031670 33.878 245 141 9 41 275 43 276 4.12e-27 112
MS.gene024879.t1 MTR_4g115785 65.789 76 26 0 467 542 7 82 6.50e-27 104
MS.gene024879.t1 MTR_4g012050 25.105 474 316 11 30 476 4 465 9.21e-27 115
MS.gene024879.t1 MTR_6g033855 25.781 384 190 9 108 488 8 299 1.93e-26 110
MS.gene024879.t1 MTR_4g088515 30.573 314 177 10 29 333 276 557 5.20e-26 112
MS.gene024879.t1 MTR_4g088515 34.091 132 73 4 333 463 501 619 6.62e-11 65.5
MS.gene024879.t1 MTR_3g051300 25.571 438 292 13 30 455 4 419 3.50e-25 110
MS.gene024879.t1 MTR_5g005870 32.487 197 125 3 329 523 75 265 7.31e-24 104
MS.gene024879.t1 MTR_2g102180 23.385 449 313 10 30 461 4 438 1.40e-22 102
MS.gene024879.t1 MTR_5g092570 24.494 445 302 13 30 459 4 429 1.73e-20 96.3
MS.gene024879.t1 MTR_6g033810 27.632 228 156 5 221 440 63 289 3.16e-19 89.0
MS.gene024879.t1 MTR_3g081170 22.846 499 313 15 23 479 20 488 4.95e-18 88.6
MS.gene024879.t1 MTR_7g074540 46.667 90 47 1 446 535 4 92 2.14e-16 78.6
MS.gene024879.t1 MTR_6g478100 30.097 206 115 7 90 293 39 217 2.59e-15 77.8
MS.gene024879.t1 MTR_1207s0010 32.168 143 89 2 134 275 7 142 4.61e-15 73.9
MS.gene024879.t1 MTR_5g097190 30.396 227 115 9 29 240 158 356 1.06e-13 73.2
MS.gene024879.t1 MTR_7g026180 34.959 123 78 2 98 219 23 144 8.78e-13 70.1
MS.gene024879.t1 MTR_7g451390 44.928 69 37 1 455 523 2 69 2.85e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024879.t1 AT2G32120 73.684 570 136 2 5 571 3 561 0.0 895
MS.gene024879.t1 AT2G32120 73.684 570 136 2 5 571 3 561 0.0 895
MS.gene024879.t1 AT3G12580 38.020 505 286 11 29 523 9 496 6.74e-102 322
MS.gene024879.t1 AT5G02500 37.030 505 291 10 29 523 9 496 3.64e-99 315
MS.gene024879.t1 AT3G09440 36.750 517 276 11 29 523 9 496 6.62e-98 311
MS.gene024879.t1 AT3G09440 36.750 517 276 11 29 523 9 496 6.62e-98 311
MS.gene024879.t1 AT3G09440 36.750 517 276 11 29 523 9 496 6.62e-98 311
MS.gene024879.t1 AT3G09440 36.750 517 276 11 29 523 9 496 6.62e-98 311
MS.gene024879.t1 AT1G16030 36.047 516 285 10 27 523 6 495 1.17e-97 311
MS.gene024879.t1 AT1G56410 37.030 505 291 10 29 523 9 496 1.53e-94 301
MS.gene024879.t1 AT5G02490 35.842 505 297 10 29 523 9 496 4.47e-94 301
MS.gene024879.t1 AT1G09080 34.469 499 306 8 30 523 43 525 9.08e-86 280
MS.gene024879.t1 AT1G09080 34.469 499 306 8 30 523 53 535 1.56e-85 280
MS.gene024879.t1 AT5G42020 33.074 514 321 10 16 523 25 521 8.39e-84 275
MS.gene024879.t1 AT5G42020 33.074 514 321 10 16 523 30 526 1.22e-83 275
MS.gene024879.t1 AT5G42020 33.268 511 317 11 16 519 25 518 1.16e-82 270
MS.gene024879.t1 AT5G28540 33.600 500 310 9 30 523 38 521 1.23e-82 272
MS.gene024879.t1 AT5G09590 30.550 527 300 11 22 523 52 537 5.13e-67 230
MS.gene024879.t1 AT4G37910 30.755 530 295 12 22 523 47 532 4.47e-64 223
MS.gene024879.t1 AT4G37910 30.755 530 295 12 22 523 47 532 4.47e-64 223
MS.gene024879.t1 AT5G02500 34.097 393 239 8 29 414 9 388 9.38e-63 215
MS.gene024879.t1 AT5G49910 31.299 508 312 14 27 523 78 559 2.17e-60 213
MS.gene024879.t1 AT4G24280 31.434 509 310 15 27 523 78 559 4.53e-59 209
MS.gene024879.t1 AT1G11660 26.247 461 306 16 30 476 4 444 8.74e-27 115
MS.gene024879.t1 AT1G11660 26.247 461 306 16 30 476 4 444 8.74e-27 115
MS.gene024879.t1 AT1G11660 26.247 461 306 16 30 476 4 444 8.74e-27 115
MS.gene024879.t1 AT1G79930 24.944 449 306 10 30 461 4 438 4.26e-26 114
MS.gene024879.t1 AT1G79930 24.944 449 306 10 30 461 4 438 4.78e-26 113
MS.gene024879.t1 AT1G79920 24.499 449 308 10 30 461 4 438 7.64e-24 106
MS.gene024879.t1 AT1G79920 24.499 449 308 10 30 461 4 438 8.96e-24 106
MS.gene024879.t1 AT1G79920 24.499 449 308 10 30 461 4 438 8.96e-24 106
MS.gene024879.t1 AT1G79920 24.499 449 308 10 30 461 4 438 8.96e-24 106
MS.gene024879.t1 AT1G11660 27.000 400 260 15 91 476 26 407 2.72e-23 105
MS.gene024879.t1 AT4G16660 25.000 360 237 10 143 480 164 512 6.13e-19 91.7
MS.gene024879.t1 AT4G16660 25.000 360 237 10 143 480 140 488 8.40e-19 90.9

Find 163 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAGGATATTTCAAGATAA+TGG 0.182846 5.3:+1391446 MS.gene024879:CDS
TGGCACCATAGGTCCTATTT+AGG 0.200225 5.3:-1391647 None:intergenic
AGAAGTCCTTGCAATGTTTC+TGG 0.201625 5.3:+1390411 MS.gene024879:CDS
TCCATGCACACACTGATTTC+AGG 0.246998 5.3:-1391495 None:intergenic
TTCACTAACGCAGCAATAAA+TGG 0.261599 5.3:-1390361 None:intergenic
CAGTGATCCCTTTGGAAACT+TGG 0.262026 5.3:+1391227 MS.gene024879:CDS
TCAATTCCAATCGCTATTTC+AGG 0.266817 5.3:-1390058 None:intergenic
GTGGTGTTCCTTGGAATTAC+AGG 0.282170 5.3:-1391315 None:intergenic
CTGATTTCAGGAACTCCTTT+TGG 0.283375 5.3:-1391483 None:intergenic
TTCAAAGACGAAGCTCCTTC+TGG 0.283594 5.3:+1390181 MS.gene024879:CDS
GAAAGCTTCTCAAGAAACTA+TGG 0.285521 5.3:+1390624 MS.gene024879:CDS
TGTTCAGGTTGATGTAGATT+TGG 0.316072 5.3:+1390918 MS.gene024879:CDS
CTATGGTGCCACAATGGATT+TGG 0.318656 5.3:+1391659 MS.gene024879:CDS
AACATTGCAAGGACTTCTTC+TGG 0.325894 5.3:-1390406 None:intergenic
AAATGTGGTGCTTACTGTTC+CGG 0.327314 5.3:+1390480 MS.gene024879:CDS
TTAGGATATTTCAAGATAAT+GGG 0.332403 5.3:+1391447 MS.gene024879:CDS
ACAGCAGTGGCGTTATTATA+TGG 0.334823 5.3:+1390589 MS.gene024879:CDS
ATAGCGATTGGAATTGATAT+TGG 0.340874 5.3:+1390064 MS.gene024879:CDS
TAACAGGCACCACAGGTATA+CGG 0.347738 5.3:-1391572 None:intergenic
AACTTCTGTTATTATGCATA+AGG 0.352864 5.3:-1391133 None:intergenic
GGCACCATAGGTCCTATTTA+GGG 0.356331 5.3:-1391646 None:intergenic
TACCATCGGTGGAGAAGATT+TGG 0.359082 5.3:+1390759 MS.gene024879:CDS
GTTCAGGTTGATGTAGATTT+GGG 0.369664 5.3:+1390919 MS.gene024879:CDS
GGCATCCTCACTTCCATAAC+AGG 0.369992 5.3:-1391588 None:intergenic
AACGCCACTGCTGTTGGTTC+AGG 0.370548 5.3:-1390580 None:intergenic
ATCAACCTGAACACTGCTTT+GGG 0.377089 5.3:-1390908 None:intergenic
ATGGAAGGAGCTGTTGCTTC+AGG 0.378268 5.3:+1391201 MS.gene024879:CDS
CATCAACCTGAACACTGCTT+TGG 0.383070 5.3:-1390909 None:intergenic
TTCCACCCAAAGCAGTGTTC+AGG 0.388302 5.3:+1390903 MS.gene024879:CDS
GTAAGCACCACATTTCTTAT+CGG 0.392583 5.3:-1390472 None:intergenic
CACGACCATGAGATGCTGTT+TGG 0.393050 5.3:+1390226 MS.gene024879:CDS
TCGCACAAGCACGCTCTAAA+CGG 0.395103 5.3:-1390528 None:intergenic
TATACCTGTGGTGCCTGTTA+TGG 0.395756 5.3:+1391575 MS.gene024879:CDS
CATGTAAACATTGGATGATA+AGG 0.397163 5.3:-1391023 None:intergenic
TCCAAGGTCTGCACCAGAAA+TGG 0.397431 5.3:-1390325 None:intergenic
GCAGAAGAAAACCACTTGTT+AGG 0.403341 5.3:+1391429 MS.gene024879:CDS
TGGCTGGTCTTCATGTTCTC+AGG 0.414478 5.3:+1390551 MS.gene024879:CDS
TTATAAAGGTATAAACCCTT+TGG 0.418915 5.3:+1391155 MS.gene024879:CDS
TGGAAACGACTGAACGAAAC+CGG 0.426040 5.3:-1390499 None:intergenic
CATGATGCAAAGGTAGAAGT+TGG 0.434870 5.3:+1391042 MS.gene024879:CDS
CCTTTGGAAGGTGCGGTTTG+TGG 0.435575 5.3:+1391171 MS.gene024879:CDS
CACGCTCTAAACGGGTCAGC+TGG 0.440361 5.3:-1390519 None:intergenic
ATAATAACAGAAGTTTATAA+AGG 0.443225 5.3:+1391141 MS.gene024879:CDS
GGTGTGCTGAGGCCCTAAAT+AGG 0.444919 5.3:+1391634 MS.gene024879:CDS
GCCATTTCTGGTGCAGACCT+TGG 0.447888 5.3:+1390324 MS.gene024879:CDS
ATGATGCAAAGGTAGAAGTT+GGG 0.448859 5.3:+1391043 MS.gene024879:CDS
GCTGGCATTGTGGTGTTCCT+TGG 0.449119 5.3:-1391324 None:intergenic
GCATCTGACAGTGAAACAAC+TGG 0.449771 5.3:+1390013 MS.gene024879:CDS
ATCAATTTATGCCTTCTTGA+GGG 0.450343 5.3:-1391685 None:intergenic
CTGCGTTAGTGAACAATGTC+TGG 0.455549 5.3:+1390371 MS.gene024879:CDS
TCAGGCATCAGTGATCCCTT+TGG 0.456587 5.3:+1391219 MS.gene024879:CDS
TGTTGACAGGGCGGAGTTTG+AGG 0.457797 5.3:+1390966 MS.gene024879:CDS
CTGGTGCAGACCTTGGACAT+TGG 0.457903 5.3:+1390331 MS.gene024879:CDS
GCCATTGGAATTCGAGCTGA+TGG 0.458770 5.3:+1391279 MS.gene024879:CDS
AAAATATATTCAAGCGTCAT+GGG 0.460640 5.3:+1390818 MS.gene024879:CDS
ATAAATGATGTGATACTTGT+TGG 0.460986 5.3:+1391069 MS.gene024879:CDS
CGCACAAGCACGCTCTAAAC+GGG 0.463935 5.3:-1390527 None:intergenic
GTAACAAGATTCTCCACCCT+TGG 0.466538 5.3:-1391108 None:intergenic
GAGCGTGCTTGTGCGATGGC+TGG 0.467592 5.3:+1390535 MS.gene024879:CDS
TTAGCCGGTGTTGTGATGCC+TGG 0.471501 5.3:+1391546 MS.gene024879:CDS
CAAGCCACTCCTCTTGCCAT+TGG 0.482744 5.3:+1391264 MS.gene024879:CDS
CCAATCGCTATTTCAGGAAG+AGG 0.484412 5.3:-1390052 None:intergenic
GTTGATGTAGATTTGGGAGA+TGG 0.485617 5.3:+1390925 MS.gene024879:CDS
TATAATAACGCCACTGCTGT+TGG 0.489694 5.3:-1390586 None:intergenic
GGTCAAAGAAATTAAATCAA+TGG 0.491607 5.3:+1390840 MS.gene024879:CDS
TAACAAGATTCTCCACCCTT+GGG 0.492275 5.3:-1391107 None:intergenic
GAAAATATATTCAAGCGTCA+TGG 0.496398 5.3:+1390817 MS.gene024879:CDS
CAAATCCATTGTGGCACCAT+AGG 0.497810 5.3:-1391658 None:intergenic
AAAGCTGATGAATTGCATCC+TGG 0.503417 5.3:-1390882 None:intergenic
CCTCTTCCTGAAATAGCGAT+TGG 0.506297 5.3:+1390052 MS.gene024879:CDS
GTTGCTGTGACTGCTACCGC+CGG 0.506470 5.3:+1390703 MS.gene024879:CDS
TTGCTGTGACTGCTACCGCC+GGG 0.511136 5.3:+1390704 MS.gene024879:CDS
AACAAGTCCAAGTTTCCAAA+GGG 0.511681 5.3:-1391234 None:intergenic
AGATATGCAAGGTTGTTGAC+AGG 0.512232 5.3:+1390953 MS.gene024879:CDS
TATCAATTTATGCCTTCTTG+AGG 0.516603 5.3:-1391686 None:intergenic
AACAGGCACCACAGGTATAC+GGG 0.517047 5.3:-1391571 None:intergenic
GGAATACCTGCAGCACCAAA+AGG 0.524506 5.3:+1391468 MS.gene024879:CDS
CAAACAGCATCTCATGGTCG+TGG 0.528773 5.3:-1390225 None:intergenic
CACAAACCGCACCTTCCAAA+GGG 0.529952 5.3:-1391170 None:intergenic
TTCAATATGAAACGCTTGAT+CGG 0.530493 5.3:+1390259 MS.gene024879:CDS
CCTTTGCATCATGTAAACAT+TGG 0.531721 5.3:-1391032 None:intergenic
GAGGCCCTAAATAGGACCTA+TGG 0.533257 5.3:+1391642 MS.gene024879:CDS
TGCGGTTTGTGGTGCAGCAA+TGG 0.533347 5.3:+1391182 MS.gene024879:CDS
ACCACAGGTATACGGGATCC+AGG 0.535468 5.3:-1391564 None:intergenic
TCCTGAAATCAGTGTGTGCA+TGG 0.540172 5.3:+1391494 MS.gene024879:CDS
TCTTGAAATATCCTAACAAG+TGG 0.545629 5.3:-1391440 None:intergenic
AAAAGTAGATCTTTACGTGC+TGG 0.548488 5.3:-1391342 None:intergenic
AACCTGAACACTGCTTTGGG+TGG 0.551609 5.3:-1390905 None:intergenic
AAGGACTTCTTCTGGAGTGG+TGG 0.559811 5.3:-1390398 None:intergenic
TGCAAGGACTTCTTCTGGAG+TGG 0.559852 5.3:-1390401 None:intergenic
TCCCAGATAAAAGCATTGGC+AGG 0.560848 5.3:+1390733 MS.gene024879:CDS
TCTCAAGAAACTATGGGCAG+TGG 0.563843 5.3:+1390631 MS.gene024879:CDS
GGATTTGGTTACCCTCAAGA+AGG 0.565408 5.3:+1391674 MS.gene024879:CDS
AACCAAATCTTCTCCACCGA+TGG 0.568389 5.3:-1390761 None:intergenic
TGGACGAACGCCAATGTCCA+AGG 0.570950 5.3:-1390341 None:intergenic
GTACGAAGGTGAGGGAAAGA+AGG 0.571023 5.3:+1391407 MS.gene024879:CDS
TTTAGAGCGTGCTTGTGCGA+TGG 0.572607 5.3:+1390531 MS.gene024879:CDS
TCAGATGCAACGGTATATGC+AGG 0.578112 5.3:-1389998 None:intergenic
GATACTTGTGTACGAAGGTG+AGG 0.578994 5.3:+1391398 MS.gene024879:CDS
AAAGGTATAAACCCTTTGGA+AGG 0.581870 5.3:+1391159 MS.gene024879:CDS
TGTTTCACTGTCAGATGCAA+CGG 0.582470 5.3:-1390008 None:intergenic
CCCATCAGCTCGAATTCCAA+TGG 0.583989 5.3:-1391280 None:intergenic
TAACAAGTCCAAGTTTCCAA+AGG 0.584586 5.3:-1391235 None:intergenic
GAGGATGTTCTTATATCCCA+AGG 0.584781 5.3:+1391091 MS.gene024879:CDS
CCATGACCATCATCAACCAT+TGG 0.585720 5.3:-1391609 None:intergenic
AGTCCTTGCAATGTTTCTGG+TGG 0.586924 5.3:+1390414 MS.gene024879:CDS
AAGCTGATGAATTGCATCCT+GGG 0.587754 5.3:-1390881 None:intergenic
AGTATCCCAGATAAAAGCAT+TGG 0.589832 5.3:+1390729 MS.gene024879:CDS
ATTGCTTCGAGTTGCAACCC+AGG 0.590200 5.3:+1390864 MS.gene024879:CDS
CCACAAACCGCACCTTCCAA+AGG 0.591096 5.3:-1391171 None:intergenic
TGTAGTGTTGCTGTGTGGAA+TGG 0.591608 5.3:+1390097 MS.gene024879:CDS
TGATGCAAAGGTAGAAGTTG+GGG 0.591780 5.3:+1391044 MS.gene024879:CDS
ACTTCCATAACAGGCACCAC+AGG 0.592348 5.3:-1391579 None:intergenic
CCAATGTTTACATGATGCAA+AGG 0.592560 5.3:+1391032 MS.gene024879:CDS
TGCTGTGACTGCTACCGCCG+GGG 0.595836 5.3:+1390705 MS.gene024879:CDS
CACAGCAACACTACATTGTG+AGG 0.598044 5.3:-1390089 None:intergenic
CATCTGACAGTGAAACAACT+GGG 0.598563 5.3:+1390014 MS.gene024879:CDS
ATGGTCGTGGGAGAATTGAC+TGG 0.601519 5.3:-1390212 None:intergenic
CCATTGGAATTCGAGCTGAT+GGG 0.601553 5.3:+1391280 MS.gene024879:CDS
AGTTTGTACCTGTAATTCCA+AGG 0.609145 5.3:+1391307 MS.gene024879:CDS
AAAGACGAAGCTCCTTCTGG+AGG 0.611357 5.3:+1390184 MS.gene024879:CDS
ATCTTTACGTGCTGGCATTG+TGG 0.613475 5.3:-1391334 None:intergenic
AATTCCAATGGCAAGAGGAG+TGG 0.613750 5.3:-1391268 None:intergenic
AAACAGCATCTCATGGTCGT+GGG 0.616728 5.3:-1390224 None:intergenic
TATCTCCAAACAGCATCTCA+TGG 0.617418 5.3:-1390231 None:intergenic
GTTTGTGGTGCAGCAATGGA+AGG 0.619096 5.3:+1391186 MS.gene024879:CDS
TGGTCATGGTTGGTGTGCTG+AGG 0.620833 5.3:+1391623 MS.gene024879:CDS
AAAGCTTCTCAAGAAACTAT+GGG 0.624225 5.3:+1390625 MS.gene024879:CDS
AATGATGTGATACTTGTTGG+AGG 0.629718 5.3:+1391072 MS.gene024879:CDS
TAGGACCTATGGTGCCACAA+TGG 0.630018 5.3:+1391653 MS.gene024879:CDS
TGGTGCCTGTTATGGAAGTG+AGG 0.631903 5.3:+1391583 MS.gene024879:CDS
TGACAGGGCGGAGTTTGAGG+AGG 0.633647 5.3:+1390969 MS.gene024879:CDS
TATAAACCCTTTGGAAGGTG+CGG 0.634750 5.3:+1391164 MS.gene024879:CDS
GCATTGGCAGGAAGTACCAT+CGG 0.637875 5.3:+1390745 MS.gene024879:CDS
AGGATGCCAATGGTTGATGA+TGG 0.639984 5.3:+1391603 MS.gene024879:CDS
GGATCCAGGCATCACAACAC+CGG 0.644727 5.3:-1391550 None:intergenic
GATATGCAAGGTTGTTGACA+GGG 0.644837 5.3:+1390954 MS.gene024879:CDS
ATACTTGTGTACGAAGGTGA+GGG 0.646011 5.3:+1391399 MS.gene024879:CDS
AGGATGTTCTTATATCCCAA+GGG 0.646556 5.3:+1391092 MS.gene024879:CDS
GTTTGAGGAGGTGAACAAAG+AGG 0.649304 5.3:+1390981 MS.gene024879:CDS
GCTCGAATTCCAATGGCAAG+AGG 0.649760 5.3:-1391273 None:intergenic
TGGTTGATGATGGTCATGGT+TGG 0.651359 5.3:+1391613 MS.gene024879:CDS
CAAACGACCGATAAGAAATG+TGG 0.653357 5.3:+1390465 MS.gene024879:CDS
TGACAGTGAAACAACTGGGG+AGG 0.653527 5.3:+1390018 MS.gene024879:CDS
ACTCCACCAGAAACATTGCA+AGG 0.653765 5.3:-1390417 None:intergenic
GCCTGGATCCCGTATACCTG+TGG 0.656774 5.3:+1391563 MS.gene024879:CDS
CCAATGGTTGATGATGGTCA+TGG 0.660629 5.3:+1391609 MS.gene024879:CDS
ATGTTCTTATATCCCAAGGG+TGG 0.662483 5.3:+1391095 MS.gene024879:CDS
TGACTGGTAACTCCTCCAGA+AGG 0.672347 5.3:-1390196 None:intergenic
GAGGGTAACCAAATCCATTG+TGG 0.675212 5.3:-1391667 None:intergenic
GATGCCTGAACCAACAGCAG+TGG 0.675835 5.3:+1390576 MS.gene024879:CDS
CAGAGTTGATACTGACCCTG+TGG 0.678557 5.3:+1390282 MS.gene024879:CDS
TATTCATGATAATCAAACTG+AGG 0.679559 5.3:+1391371 MS.gene024879:CDS
GCTGTGACTGCTACCGCCGG+GGG 0.681642 5.3:+1390706 MS.gene024879:CDS
AAATATATTCAAGCGTCATG+GGG 0.682975 5.3:+1390819 MS.gene024879:CDS
CACAATGTAGTGTTGCTGTG+TGG 0.686328 5.3:+1390092 MS.gene024879:CDS
AGATGGTTTGAAGATATGCA+AGG 0.687926 5.3:+1390942 MS.gene024879:CDS
TTGGCAGGAAGTACCATCGG+TGG 0.690515 5.3:+1390748 MS.gene024879:CDS
ATGCAAGGTTGTTGACAGGG+CGG 0.708122 5.3:+1390957 MS.gene024879:CDS
TGTGTGGAATGGCTCCGAAG+TGG 0.718800 5.3:+1390108 MS.gene024879:CDS
TATGGAAGTGAGGATGCCAA+TGG 0.723950 5.3:+1391593 MS.gene024879:CDS
ATCTGACAGTGAAACAACTG+GGG 0.741112 5.3:+1390015 MS.gene024879:CDS
GCATTGATACTTGTGTACGA+AGG 0.792141 5.3:+1391393 MS.gene024879:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAACAGAAGTTTATAA+AGG + chr5.3:1391141-1391160 MS.gene024879:CDS 15.0%
!! TTAGGATATTTCAAGATAAT+GGG + chr5.3:1391447-1391466 MS.gene024879:CDS 20.0%
!!! TTGAATATATTTTCAGAATC+TGG - chr5.3:1390811-1390830 None:intergenic 20.0%
! AAAATATATTCAAGCGTCAT+GGG + chr5.3:1390818-1390837 MS.gene024879:CDS 25.0%
! AACTTCTGTTATTATGCATA+AGG - chr5.3:1391136-1391155 None:intergenic 25.0%
! ATAAATGATGTGATACTTGT+TGG + chr5.3:1391069-1391088 MS.gene024879:CDS 25.0%
! GGTCAAAGAAATTAAATCAA+TGG + chr5.3:1390840-1390859 MS.gene024879:CDS 25.0%
! GTTAGGATATTTCAAGATAA+TGG + chr5.3:1391446-1391465 MS.gene024879:CDS 25.0%
! TATTCATGATAATCAAACTG+AGG + chr5.3:1391371-1391390 MS.gene024879:CDS 25.0%
!! AATTGCTCTCATTTTCAATA+TGG + chr5.3:1390663-1390682 MS.gene024879:CDS 25.0%
!! ATTGCTCTCATTTTCAATAT+GGG + chr5.3:1390664-1390683 MS.gene024879:CDS 25.0%
!! TTATAAAGGTATAAACCCTT+TGG + chr5.3:1391155-1391174 MS.gene024879:CDS 25.0%
AAAGCTTCTCAAGAAACTAT+GGG + chr5.3:1390625-1390644 MS.gene024879:CDS 30.0%
AAATATATTCAAGCGTCATG+GGG + chr5.3:1390819-1390838 MS.gene024879:CDS 30.0%
ATAGCGATTGGAATTGATAT+TGG + chr5.3:1390064-1390083 MS.gene024879:CDS 30.0%
CATGTAAACATTGGATGATA+AGG - chr5.3:1391026-1391045 None:intergenic 30.0%
GAAAATATATTCAAGCGTCA+TGG + chr5.3:1390817-1390836 MS.gene024879:CDS 30.0%
TCTTGAAATATCCTAACAAG+TGG - chr5.3:1391443-1391462 None:intergenic 30.0%
TTCAATATGAAACGCTTGAT+CGG + chr5.3:1390259-1390278 MS.gene024879:CDS 30.0%
! AAGTAAAAATCTGCCATTTC+TGG + chr5.3:1390312-1390331 MS.gene024879:CDS 30.0%
AAAAGTAGATCTTTACGTGC+TGG - chr5.3:1391345-1391364 None:intergenic 35.0%
AACAAGTCCAAGTTTCCAAA+GGG - chr5.3:1391237-1391256 None:intergenic 35.0%
AGATGGTTTGAAGATATGCA+AGG + chr5.3:1390942-1390961 MS.gene024879:CDS 35.0%
AGGATGTTCTTATATCCCAA+GGG + chr5.3:1391092-1391111 MS.gene024879:CDS 35.0%
AGTTTGTACCTGTAATTCCA+AGG + chr5.3:1391307-1391326 MS.gene024879:CDS 35.0%
ATGATGCAAAGGTAGAAGTT+GGG + chr5.3:1391043-1391062 MS.gene024879:CDS 35.0%
CCAATGTTTACATGATGCAA+AGG + chr5.3:1391032-1391051 MS.gene024879:CDS 35.0%
CCTTTGCATCATGTAAACAT+TGG - chr5.3:1391035-1391054 None:intergenic 35.0%
GAAAGCTTCTCAAGAAACTA+TGG + chr5.3:1390624-1390643 MS.gene024879:CDS 35.0%
GTAAGCACCACATTTCTTAT+CGG - chr5.3:1390475-1390494 None:intergenic 35.0%
TAACAAGTCCAAGTTTCCAA+AGG - chr5.3:1391238-1391257 None:intergenic 35.0%
TTCACTAACGCAGCAATAAA+TGG - chr5.3:1390364-1390383 None:intergenic 35.0%
! AAAGGTATAAACCCTTTGGA+AGG + chr5.3:1391159-1391178 MS.gene024879:CDS 35.0%
! AATGATGTGATACTTGTTGG+AGG + chr5.3:1391072-1391091 MS.gene024879:CDS 35.0%
! AGTATCCCAGATAAAAGCAT+TGG + chr5.3:1390729-1390748 MS.gene024879:CDS 35.0%
! TCAATTCCAATCGCTATTTC+AGG - chr5.3:1390061-1390080 None:intergenic 35.0%
! TTTTACTTGCATGAACCACA+GGG - chr5.3:1390300-1390319 None:intergenic 35.0%
! TTTTTACTTGCATGAACCAC+AGG - chr5.3:1390301-1390320 None:intergenic 35.0%
!! GTTCAGGTTGATGTAGATTT+GGG + chr5.3:1390919-1390938 MS.gene024879:CDS 35.0%
!! GTTTTTCAAAAGCTCCACTT+CGG - chr5.3:1390125-1390144 None:intergenic 35.0%
!! TGTTCAGGTTGATGTAGATT+TGG + chr5.3:1390918-1390937 MS.gene024879:CDS 35.0%
AAAGCTGATGAATTGCATCC+TGG - chr5.3:1390885-1390904 None:intergenic 40.0%
AAATGTGGTGCTTACTGTTC+CGG + chr5.3:1390480-1390499 MS.gene024879:CDS 40.0%
AACATTGCAAGGACTTCTTC+TGG - chr5.3:1390409-1390428 None:intergenic 40.0%
AAGCTGATGAATTGCATCCT+GGG - chr5.3:1390884-1390903 None:intergenic 40.0%
ACAGCAGTGGCGTTATTATA+TGG + chr5.3:1390589-1390608 MS.gene024879:CDS 40.0%
AGAAGTCCTTGCAATGTTTC+TGG + chr5.3:1390411-1390430 MS.gene024879:CDS 40.0%
AGATATGCAAGGTTGTTGAC+AGG + chr5.3:1390953-1390972 MS.gene024879:CDS 40.0%
ATACTTGTGTACGAAGGTGA+GGG + chr5.3:1391399-1391418 MS.gene024879:CDS 40.0%
ATCAACCTGAACACTGCTTT+GGG - chr5.3:1390911-1390930 None:intergenic 40.0%
ATCTGACAGTGAAACAACTG+GGG + chr5.3:1390015-1390034 MS.gene024879:CDS 40.0%
ATGTTCTTATATCCCAAGGG+TGG + chr5.3:1391095-1391114 MS.gene024879:CDS 40.0%
CAAACGACCGATAAGAAATG+TGG + chr5.3:1390465-1390484 MS.gene024879:CDS 40.0%
CATCTGACAGTGAAACAACT+GGG + chr5.3:1390014-1390033 MS.gene024879:CDS 40.0%
CATGATGCAAAGGTAGAAGT+TGG + chr5.3:1391042-1391061 MS.gene024879:CDS 40.0%
GAGGATGTTCTTATATCCCA+AGG + chr5.3:1391091-1391110 MS.gene024879:CDS 40.0%
GATATGCAAGGTTGTTGACA+GGG + chr5.3:1390954-1390973 MS.gene024879:CDS 40.0%
GCAGAAGAAAACCACTTGTT+AGG + chr5.3:1391429-1391448 MS.gene024879:CDS 40.0%
GTTGATGTAGATTTGGGAGA+TGG + chr5.3:1390925-1390944 MS.gene024879:CDS 40.0%
TAACAAGATTCTCCACCCTT+GGG - chr5.3:1391110-1391129 None:intergenic 40.0%
TATAATAACGCCACTGCTGT+TGG - chr5.3:1390589-1390608 None:intergenic 40.0%
TATCTCCAAACAGCATCTCA+TGG - chr5.3:1390234-1390253 None:intergenic 40.0%
TGATGCAAAGGTAGAAGTTG+GGG + chr5.3:1391044-1391063 MS.gene024879:CDS 40.0%
TGTTTCACTGTCAGATGCAA+CGG - chr5.3:1390011-1390030 None:intergenic 40.0%
! CTCATTTTCAATATGGGTGC+TGG + chr5.3:1390670-1390689 MS.gene024879:CDS 40.0%
! CTGATTTCAGGAACTCCTTT+TGG - chr5.3:1391486-1391505 None:intergenic 40.0%
! GCATTGATACTTGTGTACGA+AGG + chr5.3:1391393-1391412 MS.gene024879:CDS 40.0%
! TATAAACCCTTTGGAAGGTG+CGG + chr5.3:1391164-1391183 MS.gene024879:CDS 40.0%
! TCCTGCCAATGCTTTTATCT+GGG - chr5.3:1390737-1390756 None:intergenic 40.0%
! TTCCTGCCAATGCTTTTATC+TGG - chr5.3:1390738-1390757 None:intergenic 40.0%
AAACAGCATCTCATGGTCGT+GGG - chr5.3:1390227-1390246 None:intergenic 45.0%
AACCAAATCTTCTCCACCGA+TGG - chr5.3:1390764-1390783 None:intergenic 45.0%
AATTCCAATGGCAAGAGGAG+TGG - chr5.3:1391271-1391290 None:intergenic 45.0%
ACTCCACCAGAAACATTGCA+AGG - chr5.3:1390420-1390439 None:intergenic 45.0%
CAAATCCATTGTGGCACCAT+AGG - chr5.3:1391661-1391680 None:intergenic 45.0%
CACAGCAACACTACATTGTG+AGG - chr5.3:1390092-1390111 None:intergenic 45.0%
CATCAACCTGAACACTGCTT+TGG - chr5.3:1390912-1390931 None:intergenic 45.0%
CCATGACCATCATCAACCAT+TGG - chr5.3:1391612-1391631 None:intergenic 45.0%
CCATTGGAATTCGAGCTGAT+GGG + chr5.3:1391280-1391299 MS.gene024879:CDS 45.0%
CCTCTTCCTGAAATAGCGAT+TGG + chr5.3:1390052-1390071 MS.gene024879:CDS 45.0%
CTGCGTTAGTGAACAATGTC+TGG + chr5.3:1390371-1390390 MS.gene024879:CDS 45.0%
GAGGGTAACCAAATCCATTG+TGG - chr5.3:1391670-1391689 None:intergenic 45.0%
GATACTTGTGTACGAAGGTG+AGG + chr5.3:1391398-1391417 MS.gene024879:CDS 45.0%
GCATCTGACAGTGAAACAAC+TGG + chr5.3:1390013-1390032 MS.gene024879:CDS 45.0%
GGCACCATAGGTCCTATTTA+GGG - chr5.3:1391649-1391668 None:intergenic 45.0%
GTAACAAGATTCTCCACCCT+TGG - chr5.3:1391111-1391130 None:intergenic 45.0%
GTGGTGTTCCTTGGAATTAC+AGG - chr5.3:1391318-1391337 None:intergenic 45.0%
GTTTGAGGAGGTGAACAAAG+AGG + chr5.3:1390981-1391000 MS.gene024879:CDS 45.0%
TAACAGGCACCACAGGTATA+CGG - chr5.3:1391575-1391594 None:intergenic 45.0%
TACCATCGGTGGAGAAGATT+TGG + chr5.3:1390759-1390778 MS.gene024879:CDS 45.0%
TATACCTGTGGTGCCTGTTA+TGG + chr5.3:1391575-1391594 MS.gene024879:CDS 45.0%
TATGGAAGTGAGGATGCCAA+TGG + chr5.3:1391593-1391612 MS.gene024879:CDS 45.0%
TCAGATGCAACGGTATATGC+AGG - chr5.3:1390001-1390020 None:intergenic 45.0%
TCCTGAAATCAGTGTGTGCA+TGG + chr5.3:1391494-1391513 MS.gene024879:CDS 45.0%
TCTCAAGAAACTATGGGCAG+TGG + chr5.3:1390631-1390650 MS.gene024879:CDS 45.0%
TGGAAACGACTGAACGAAAC+CGG - chr5.3:1390502-1390521 None:intergenic 45.0%
TGGCACCATAGGTCCTATTT+AGG - chr5.3:1391650-1391669 None:intergenic 45.0%
TTCAAAGACGAAGCTCCTTC+TGG + chr5.3:1390181-1390200 MS.gene024879:CDS 45.0%
! ATCTTTACGTGCTGGCATTG+TGG - chr5.3:1391337-1391356 None:intergenic 45.0%
! CACAATGTAGTGTTGCTGTG+TGG + chr5.3:1390092-1390111 MS.gene024879:CDS 45.0%
! CAGTGATCCCTTTGGAAACT+TGG + chr5.3:1391227-1391246 MS.gene024879:CDS 45.0%
! CCAATCGCTATTTCAGGAAG+AGG - chr5.3:1390055-1390074 None:intergenic 45.0%
! GGATTTGGTTACCCTCAAGA+AGG + chr5.3:1391674-1391693 MS.gene024879:CDS 45.0%
! TGTAGTGTTGCTGTGTGGAA+TGG + chr5.3:1390097-1390116 MS.gene024879:CDS 45.0%
!! AGGATGCCAATGGTTGATGA+TGG + chr5.3:1391603-1391622 MS.gene024879:CDS 45.0%
!! AGTCCTTGCAATGTTTCTGG+TGG + chr5.3:1390414-1390433 MS.gene024879:CDS 45.0%
!! CCAATGGTTGATGATGGTCA+TGG + chr5.3:1391609-1391628 MS.gene024879:CDS 45.0%
!! CTATGGTGCCACAATGGATT+TGG + chr5.3:1391659-1391678 MS.gene024879:CDS 45.0%
!! TCCATGCACACACTGATTTC+AGG - chr5.3:1391498-1391517 None:intergenic 45.0%
!! TCCCAGATAAAAGCATTGGC+AGG + chr5.3:1390733-1390752 MS.gene024879:CDS 45.0%
!! TGGTTGATGATGGTCATGGT+TGG + chr5.3:1391613-1391632 MS.gene024879:CDS 45.0%
!! TTTTATCTGGGATACTCCCC+CGG - chr5.3:1390725-1390744 None:intergenic 45.0%
AAAGACGAAGCTCCTTCTGG+AGG + chr5.3:1390184-1390203 MS.gene024879:CDS 50.0%
AACAGGCACCACAGGTATAC+GGG - chr5.3:1391574-1391593 None:intergenic 50.0%
ACTTCCATAACAGGCACCAC+AGG - chr5.3:1391582-1391601 None:intergenic 50.0%
ATGCAAGGTTGTTGACAGGG+CGG + chr5.3:1390957-1390976 MS.gene024879:CDS 50.0%
ATGGTCGTGGGAGAATTGAC+TGG - chr5.3:1390215-1390234 None:intergenic 50.0%
CAAACAGCATCTCATGGTCG+TGG - chr5.3:1390228-1390247 None:intergenic 50.0%
CACAAACCGCACCTTCCAAA+GGG - chr5.3:1391173-1391192 None:intergenic 50.0%
CACGACCATGAGATGCTGTT+TGG + chr5.3:1390226-1390245 MS.gene024879:CDS 50.0%
CCCATCAGCTCGAATTCCAA+TGG - chr5.3:1391283-1391302 None:intergenic 50.0%
GAGGCCCTAAATAGGACCTA+TGG + chr5.3:1391642-1391661 MS.gene024879:CDS 50.0%
GCCATTGGAATTCGAGCTGA+TGG + chr5.3:1391279-1391298 MS.gene024879:CDS 50.0%
GCTCGAATTCCAATGGCAAG+AGG - chr5.3:1391276-1391295 None:intergenic 50.0%
GGAATACCTGCAGCACCAAA+AGG + chr5.3:1391468-1391487 MS.gene024879:CDS 50.0%
GGCATCCTCACTTCCATAAC+AGG - chr5.3:1391591-1391610 None:intergenic 50.0%
GTACGAAGGTGAGGGAAAGA+AGG + chr5.3:1391407-1391426 MS.gene024879:CDS 50.0%
GTTTGTGGTGCAGCAATGGA+AGG + chr5.3:1391186-1391205 MS.gene024879:CDS 50.0%
TCAGGCATCAGTGATCCCTT+TGG + chr5.3:1391219-1391238 MS.gene024879:CDS 50.0%
TCCAAGGTCTGCACCAGAAA+TGG - chr5.3:1390328-1390347 None:intergenic 50.0%
TGACAGTGAAACAACTGGGG+AGG + chr5.3:1390018-1390037 MS.gene024879:CDS 50.0%
TGACTGGTAACTCCTCCAGA+AGG - chr5.3:1390199-1390218 None:intergenic 50.0%
TGGTGCCTGTTATGGAAGTG+AGG + chr5.3:1391583-1391602 MS.gene024879:CDS 50.0%
TTCCACCCAAAGCAGTGTTC+AGG + chr5.3:1390903-1390922 MS.gene024879:CDS 50.0%
! AACCTGAACACTGCTTTGGG+TGG - chr5.3:1390908-1390927 None:intergenic 50.0%
! ATGGAAGGAGCTGTTGCTTC+AGG + chr5.3:1391201-1391220 MS.gene024879:CDS 50.0%
! TCGCACAAGCACGCTCTAAA+CGG - chr5.3:1390531-1390550 None:intergenic 50.0%
! TGCAAGGACTTCTTCTGGAG+TGG - chr5.3:1390404-1390423 None:intergenic 50.0%
! TTTAGAGCGTGCTTGTGCGA+TGG + chr5.3:1390531-1390550 MS.gene024879:CDS 50.0%
!! AACGTGCTGCGAGTTTTAGC+CGG + chr5.3:1391531-1391550 MS.gene024879:CDS 50.0%
!! AAGGACTTCTTCTGGAGTGG+TGG - chr5.3:1390401-1390420 None:intergenic 50.0%
!! ATTGCTTCGAGTTGCAACCC+AGG + chr5.3:1390864-1390883 MS.gene024879:CDS 50.0%
!! CAGAGTTGATACTGACCCTG+TGG + chr5.3:1390282-1390301 MS.gene024879:CDS 50.0%
!! GCATTGGCAGGAAGTACCAT+CGG + chr5.3:1390745-1390764 MS.gene024879:CDS 50.0%
!! TAGGACCTATGGTGCCACAA+TGG + chr5.3:1391653-1391672 MS.gene024879:CDS 50.0%
!! TGGCTGGTCTTCATGTTCTC+AGG + chr5.3:1390551-1390570 MS.gene024879:CDS 50.0%
ACCACAGGTATACGGGATCC+AGG - chr5.3:1391567-1391586 None:intergenic 55.0%
CAAGCCACTCCTCTTGCCAT+TGG + chr5.3:1391264-1391283 MS.gene024879:CDS 55.0%
CCACAAACCGCACCTTCCAA+AGG - chr5.3:1391174-1391193 None:intergenic 55.0%
CTGGTGCAGACCTTGGACAT+TGG + chr5.3:1390331-1390350 MS.gene024879:CDS 55.0%
GATGCCTGAACCAACAGCAG+TGG + chr5.3:1390576-1390595 MS.gene024879:CDS 55.0%
GCTGGCATTGTGGTGTTCCT+TGG - chr5.3:1391327-1391346 None:intergenic 55.0%
GGATCCAGGCATCACAACAC+CGG - chr5.3:1391553-1391572 None:intergenic 55.0%
GGTGTGCTGAGGCCCTAAAT+AGG + chr5.3:1391634-1391653 MS.gene024879:CDS 55.0%
TGCGGTTTGTGGTGCAGCAA+TGG + chr5.3:1391182-1391201 MS.gene024879:CDS 55.0%
TGGACGAACGCCAATGTCCA+AGG - chr5.3:1390344-1390363 None:intergenic 55.0%
TGTGTGGAATGGCTCCGAAG+TGG + chr5.3:1390108-1390127 MS.gene024879:CDS 55.0%
TGTTGACAGGGCGGAGTTTG+AGG + chr5.3:1390966-1390985 MS.gene024879:CDS 55.0%
! CCTTTGGAAGGTGCGGTTTG+TGG + chr5.3:1391171-1391190 MS.gene024879:CDS 55.0%
! CGCACAAGCACGCTCTAAAC+GGG - chr5.3:1390530-1390549 None:intergenic 55.0%
! TGGTCATGGTTGGTGTGCTG+AGG + chr5.3:1391623-1391642 MS.gene024879:CDS 55.0%
!! AACGCCACTGCTGTTGGTTC+AGG - chr5.3:1390583-1390602 None:intergenic 55.0%
!! GCCATTTCTGGTGCAGACCT+TGG + chr5.3:1390324-1390343 MS.gene024879:CDS 55.0%
!! TTAGCCGGTGTTGTGATGCC+TGG + chr5.3:1391546-1391565 MS.gene024879:CDS 55.0%
!! TTGGCAGGAAGTACCATCGG+TGG + chr5.3:1390748-1390767 MS.gene024879:CDS 55.0%
!!! GGAACTCCTTTTGGTGCTGC+AGG - chr5.3:1391477-1391496 None:intergenic 55.0%
GCCTGGATCCCGTATACCTG+TGG + chr5.3:1391563-1391582 MS.gene024879:CDS 60.0%
GTTGCTGTGACTGCTACCGC+CGG + chr5.3:1390703-1390722 MS.gene024879:CDS 60.0%
TGACAGGGCGGAGTTTGAGG+AGG + chr5.3:1390969-1390988 MS.gene024879:CDS 60.0%
TTGCTGTGACTGCTACCGCC+GGG + chr5.3:1390704-1390723 MS.gene024879:CDS 60.0%
! CACGCTCTAAACGGGTCAGC+TGG - chr5.3:1390522-1390541 None:intergenic 60.0%
! TATCTGGGATACTCCCCCGG+CGG - chr5.3:1390722-1390741 None:intergenic 60.0%
GAGCGTGCTTGTGCGATGGC+TGG + chr5.3:1390535-1390554 MS.gene024879:CDS 65.0%
TGCTGTGACTGCTACCGCCG+GGG + chr5.3:1390705-1390724 MS.gene024879:CDS 65.0%
GCTGTGACTGCTACCGCCGG+GGG + chr5.3:1390706-1390725 MS.gene024879:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 1389983 1391701 1389983 ID=MS.gene024879
chr5.3 mRNA 1389983 1391701 1389983 ID=MS.gene024879.t1;Parent=MS.gene024879
chr5.3 exon 1389983 1391701 1389983 ID=MS.gene024879.t1.exon1;Parent=MS.gene024879.t1
chr5.3 CDS 1389983 1391701 1389983 ID=cds.MS.gene024879.t1;Parent=MS.gene024879.t1
Gene Sequence

>MS.gene024879

ATGGCAGAACGAGAACCTGCATATACCGTTGCATCTGACAGTGAAACAACTGGGGAGGAAAAATCATCACCTCTTCCTGAAATAGCGATTGGAATTGATATTGGCACCTCACAATGTAGTGTTGCTGTGTGGAATGGCTCCGAAGTGGAGCTTTTGAAAAACAAAAGAAATCAGAAGCTTATGAAGTCATTTGTGACTTTCAAAGACGAAGCTCCTTCTGGAGGAGTTACCAGTCAATTCTCCCACGACCATGAGATGCTGTTTGGAGATACAATTTTCAATATGAAACGCTTGATCGGCAGAGTTGATACTGACCCTGTGGTTCATGCAAGTAAAAATCTGCCATTTCTGGTGCAGACCTTGGACATTGGCGTTCGTCCATTTATTGCTGCGTTAGTGAACAATGTCTGGAGATCCACCACTCCAGAAGAAGTCCTTGCAATGTTTCTGGTGGAGTTAAGACTGATGACTGAAACTCATCTCAAACGACCGATAAGAAATGTGGTGCTTACTGTTCCGGTTTCGTTCAGTCGTTTCCAGCTGACCCGTTTAGAGCGTGCTTGTGCGATGGCTGGTCTTCATGTTCTCAGGTTGATGCCTGAACCAACAGCAGTGGCGTTATTATATGGACAACAACAACAGAAAGCTTCTCAAGAAACTATGGGCAGTGGAAGTGAGAAAATTGCTCTCATTTTCAATATGGGTGCTGGTTATTGTGATGTTGCTGTGACTGCTACCGCCGGGGGAGTATCCCAGATAAAAGCATTGGCAGGAAGTACCATCGGTGGAGAAGATTTGGTTCAGAATATGATGTGTTATCTCTTACCAGATTCTGAAAATATATTCAAGCGTCATGGGGTCAAAGAAATTAAATCAATGGCATTGCTTCGAGTTGCAACCCAGGATGCAATTCATCAGCTTTCCACCCAAAGCAGTGTTCAGGTTGATGTAGATTTGGGAGATGGTTTGAAGATATGCAAGGTTGTTGACAGGGCGGAGTTTGAGGAGGTGAACAAAGAGGTGTTCGAAAAGTGTGAAAGCCTTATCATCCAATGTTTACATGATGCAAAGGTAGAAGTTGGGGATATAAATGATGTGATACTTGTTGGAGGATGTTCTTATATCCCAAGGGTGGAGAATCTTGTTACAACCTTATGCATAATAACAGAAGTTTATAAAGGTATAAACCCTTTGGAAGGTGCGGTTTGTGGTGCAGCAATGGAAGGAGCTGTTGCTTCAGGCATCAGTGATCCCTTTGGAAACTTGGACTTGTTAACGATTCAAGCCACTCCTCTTGCCATTGGAATTCGAGCTGATGGGAACAAGTTTGTACCTGTAATTCCAAGGAACACCACAATGCCAGCACGTAAAGATCTACTTTTCACAACTATTCATGATAATCAAACTGAGGCATTGATACTTGTGTACGAAGGTGAGGGAAAGAAGGCAGAAGAAAACCACTTGTTAGGATATTTCAAGATAATGGGAATACCTGCAGCACCAAAAGGAGTTCCTGAAATCAGTGTGTGCATGGACATAGATGCTGCAAACGTGCTGCGAGTTTTAGCCGGTGTTGTGATGCCTGGATCCCGTATACCTGTGGTGCCTGTTATGGAAGTGAGGATGCCAATGGTTGATGATGGTCATGGTTGGTGTGCTGAGGCCCTAAATAGGACCTATGGTGCCACAATGGATTTGGTTACCCTCAAGAAGGCATAA
Protein sequence

>MS.gene024879.t1

MAEREPAYTVASDSETTGEEKSSPLPEIAIGIDIGTSQCSVAVWNGSEVELLKNKRNQKLMKSFVTFKDEAPSGGVTSQFSHDHEMLFGDTIFNMKRLIGRVDTDPVVHASKNLPFLVQTLDIGVRPFIAALVNNVWRSTTPEEVLAMFLVELRLMTETHLKRPIRNVVLTVPVSFSRFQLTRLERACAMAGLHVLRLMPEPTAVALLYGQQQQKASQETMGSGSEKIALIFNMGAGYCDVAVTATAGGVSQIKALAGSTIGGEDLVQNMMCYLLPDSENIFKRHGVKEIKSMALLRVATQDAIHQLSTQSSVQVDVDLGDGLKICKVVDRAEFEEVNKEVFEKCESLIIQCLHDAKVEVGDINDVILVGGCSYIPRVENLVTTLCIITEVYKGINPLEGAVCGAAMEGAVASGISDPFGNLDLLTIQATPLAIGIRADGNKFVPVIPRNTTMPARKDLLFTTIHDNQTEALILVYEGEGKKAEENHLLGYFKIMGIPAAPKGVPEISVCMDIDAANVLRVLAGVVMPGSRIPVVPVMEVRMPMVDDGHGWCAEALNRTYGATMDLVTLKKA