Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024959.t1 | XP_003610615.1 | 95.8 | 381 | 10 | 2 | 1 | 376 | 1 | 380 | 3.00E-203 | 717.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024959.t1 | A9A3L9 | 39.3 | 313 | 172 | 8 | 48 | 353 | 44 | 345 | 1.2e-54 | 215.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024959.t1 | G7K0W5 | 95.8 | 381 | 10 | 2 | 1 | 376 | 1 | 380 | 2.2e-203 | 717.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene64663 | MS.gene024959 | PPI |
| MS.gene024959 | MS.gene32566 | PPI |
| MS.gene29482 | MS.gene024959 | PPI |
| MS.gene50173 | MS.gene024959 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024959.t1 | MTR_5g005050 | 95.801 | 381 | 10 | 2 | 1 | 376 | 1 | 380 | 0.0 | 748 |
| MS.gene024959.t1 | MTR_5g005050 | 86.877 | 381 | 9 | 3 | 1 | 376 | 1 | 345 | 0.0 | 661 |
| MS.gene024959.t1 | MTR_5g079860 | 40.357 | 280 | 151 | 6 | 82 | 357 | 117 | 384 | 5.14e-55 | 187 |
| MS.gene024959.t1 | MTR_8g064490 | 34.078 | 358 | 193 | 11 | 11 | 353 | 92 | 421 | 3.89e-48 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024959.t1 | AT3G19630 | 71.353 | 377 | 102 | 4 | 1 | 376 | 1 | 372 | 0.0 | 541 |
| MS.gene024959.t1 | AT2G39670 | 42.149 | 242 | 133 | 6 | 116 | 353 | 163 | 401 | 1.63e-51 | 177 |
| MS.gene024959.t1 | AT2G39670 | 42.149 | 242 | 133 | 6 | 116 | 353 | 166 | 404 | 1.89e-51 | 177 |
| MS.gene024959.t1 | AT1G60230 | 35.159 | 347 | 186 | 11 | 20 | 353 | 113 | 433 | 5.61e-50 | 174 |
Find 81 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCAGGTTGGATGCAAAA+TGG | 0.233494 | 5.3:+538925 | MS.gene024959:CDS |
| CAAAGTTCATTCCAATTATA+TGG | 0.237394 | 5.3:+538618 | MS.gene024959:CDS |
| AAGAGATGCTTCCATATAAT+TGG | 0.240823 | 5.3:-538629 | None:intergenic |
| ATTCTGTGCAACTGGAAGTA+TGG | 0.286571 | 5.3:+538955 | MS.gene024959:CDS |
| TTAATACCTTTCAACTCTAT+TGG | 0.301051 | 5.3:+540499 | MS.gene024959:CDS |
| CACGGGCAGCAGGCATTATC+TGG | 0.316832 | 5.3:-540016 | None:intergenic |
| TGCTGCCCGTGCTTTCCCTT+TGG | 0.319573 | 5.3:+540028 | MS.gene024959:CDS |
| TTCAAGCTTGATCACAAGTT+TGG | 0.320954 | 5.3:-538798 | None:intergenic |
| GACTGTTGTTCGAATATTAT+AGG | 0.343108 | 5.3:-540590 | None:intergenic |
| TACTTTATGTATTTCTTCTC+AGG | 0.346947 | 5.3:+538910 | MS.gene024959:CDS |
| CATATAATTGGAATGAACTT+TGG | 0.355589 | 5.3:-538617 | None:intergenic |
| TATCCGTAATGTTGTCTTCA+TGG | 0.357605 | 5.3:+539045 | MS.gene024959:CDS |
| GAAGAAACAATAATTCTGAT+TGG | 0.377330 | 5.3:+538654 | MS.gene024959:CDS |
| GAATCTGTGCGCATCATGAC+TGG | 0.379358 | 5.3:+539187 | MS.gene024959:CDS |
| TGTCCTCACCCATCTGCTTC+CGG | 0.386591 | 5.3:-540612 | None:intergenic |
| TATGAGATATGATACTCGTT+TGG | 0.402274 | 5.3:+538847 | MS.gene024959:CDS |
| ATTGAATACATAATGCTTGA+TGG | 0.402824 | 5.3:+540198 | MS.gene024959:CDS |
| ATGAGATATGATACTCGTTT+GGG | 0.407618 | 5.3:+538848 | MS.gene024959:CDS |
| GGTTGTAAATTCTGTGCAAC+TGG | 0.417325 | 5.3:+538947 | MS.gene024959:CDS |
| AAGATCTTCTATATCCGTTA+GGG | 0.419980 | 5.3:-540698 | None:intergenic |
| TTATCTGGCAACGGATGTCT+TGG | 0.422082 | 5.3:-540001 | None:intergenic |
| CAAGATCTTCTATATCCGTT+AGG | 0.423990 | 5.3:-540699 | None:intergenic |
| TCTCAGGTTGGATGCAAAAT+GGG | 0.425113 | 5.3:+538926 | MS.gene024959:CDS |
| CATTTCAGTTGTCATTGAAA+AGG | 0.427528 | 5.3:+539215 | MS.gene024959:CDS |
| AAGAAACAATAATTCTGATT+GGG | 0.429002 | 5.3:+538655 | MS.gene024959:CDS |
| TTATGTATTTCTTCTCAGGT+TGG | 0.448424 | 5.3:+538914 | MS.gene024959:CDS |
| AAAGGGAAAGCACGGGCAGC+AGG | 0.451798 | 5.3:-540026 | None:intergenic |
| GAGCAGCATGCCCACCTACT+AGG | 0.453566 | 5.3:+540234 | MS.gene024959:CDS |
| ACAATAATTCTGATTGGGAA+TGG | 0.456253 | 5.3:+538660 | MS.gene024959:CDS |
| TCTCCAGCAGCTTTCCTAGT+AGG | 0.463335 | 5.3:-540248 | None:intergenic |
| CAATAATTCTGATTGGGAAT+GGG | 0.463962 | 5.3:+538661 | MS.gene024959:CDS |
| TGCAAGAATATCAAAGGAAA+AGG | 0.469220 | 5.3:+540069 | MS.gene024959:CDS |
| TTCTGTGCAACTGGAAGTAT+GGG | 0.477827 | 5.3:+538956 | MS.gene024959:CDS |
| GATACTCGTTTGGGTAAATA+CGG | 0.499611 | 5.3:+538857 | MS.gene024959:CDS |
| CCAGCAGCTTTCCTAGTAGG+TGG | 0.502107 | 5.3:-540245 | None:intergenic |
| TATCTGGCAACGGATGTCTT+GGG | 0.508433 | 5.3:-540000 | None:intergenic |
| ATGAAGAGAAGAAGAGAGAG+GGG | 0.513472 | 5.3:-538744 | None:intergenic |
| AAGTGGTGCGTGCGGACAAT+TGG | 0.513561 | 5.3:+540636 | MS.gene024959:CDS |
| TTTAAAAGTAACTTATCCTC+TGG | 0.519468 | 5.3:+538980 | MS.gene024959:CDS |
| TTACCATGAAGACAACATTA+CGG | 0.521555 | 5.3:-539048 | None:intergenic |
| CTTGTGATCAAGCTTGAAAA+CGG | 0.521991 | 5.3:+538803 | MS.gene024959:CDS |
| TGACGTGCCTGGTTTGAACT+TGG | 0.522727 | 5.3:+539956 | MS.gene024959:CDS |
| GCATTTCCGAGAGACTTGTC+AGG | 0.526946 | 5.3:-540670 | None:intergenic |
| AATGAAGAGAAGAAGAGAGA+GGG | 0.528611 | 5.3:-538745 | None:intergenic |
| AAGCTTCATAATGACGTGCC+TGG | 0.529075 | 5.3:+539945 | MS.gene024959:CDS |
| TAAGCTGAAGAAGGCAGAGA+AGG | 0.540953 | 5.3:-538695 | None:intergenic |
| TACGGTGGTCAACCTCGTCC+TGG | 0.541461 | 5.3:+538875 | MS.gene024959:CDS |
| TGGTGCGTGCGGACAATTGG+TGG | 0.546775 | 5.3:+540639 | MS.gene024959:CDS |
| TGGCAACGGATGTCTTGGGC+TGG | 0.557842 | 5.3:-539996 | None:intergenic |
| CAGCAGCTTTCCTAGTAGGT+GGG | 0.560215 | 5.3:-540244 | None:intergenic |
| CTTCACTGCAAGAATATCAA+AGG | 0.561777 | 5.3:+540063 | MS.gene024959:CDS |
| AACAACAGTCCGGAAGCAGA+TGG | 0.563846 | 5.3:+540603 | MS.gene024959:CDS |
| AACTTACCTGACAAGTCTCT+CGG | 0.568451 | 5.3:+540664 | MS.gene024959:CDS |
| AGTCCGGAAGCAGATGGGTG+AGG | 0.575221 | 5.3:+540609 | MS.gene024959:CDS |
| TGGTGAAATTGTCGAGCAGT+TGG | 0.575340 | 5.3:+539000 | MS.gene024959:CDS |
| GAATGAAGAGAAGAAGAGAG+AGG | 0.577552 | 5.3:-538746 | None:intergenic |
| AATGTACCAATAGAGTTGAA+AGG | 0.587561 | 5.3:-540505 | None:intergenic |
| ATAATATTCGAACAACAGTC+CGG | 0.589378 | 5.3:+540593 | MS.gene024959:CDS |
| AGGAATGAATAAGCTGAAGA+AGG | 0.591039 | 5.3:-538704 | None:intergenic |
| CCACCTACTAGGAAAGCTGC+TGG | 0.593678 | 5.3:+540245 | MS.gene024959:CDS |
| GAAAAGGATTACCGTCTCAA+CGG | 0.598039 | 5.3:+539231 | MS.gene024959:CDS |
| CAGCAGGCATTATCTGGCAA+CGG | 0.603912 | 5.3:-540010 | None:intergenic |
| AAAGTAGCTCTCAGACCACC+AGG | 0.606040 | 5.3:-538893 | None:intergenic |
| ACAACAGTCCGGAAGCAGAT+GGG | 0.608173 | 5.3:+540604 | MS.gene024959:CDS |
| GATCTTCTATATCCGTTAGG+GGG | 0.613539 | 5.3:-540696 | None:intergenic |
| ACAGCAGAATAGTTGTTCAA+AGG | 0.614724 | 5.3:-539160 | None:intergenic |
| AATCTGTGCGCATCATGACT+GGG | 0.616777 | 5.3:+539188 | MS.gene024959:CDS |
| AAGTGACGTTATCAGAAGAG+TGG | 0.616950 | 5.3:-538775 | None:intergenic |
| GCTCTCAGACCACCAGGACG+AGG | 0.621474 | 5.3:-538887 | None:intergenic |
| GAGACTGCCAAGTTCAAACC+AGG | 0.629568 | 5.3:-539963 | None:intergenic |
| TTTGAACAACTATTCTGCTG+TGG | 0.630303 | 5.3:+539162 | MS.gene024959:CDS |
| AGATCTTCTATATCCGTTAG+GGG | 0.635379 | 5.3:-540697 | None:intergenic |
| AAAATCCGATCGGTATTCGA+CGG | 0.647476 | 5.3:+538554 | MS.gene024959:CDS |
| GCTGCTGGAGACATTTGAAG+TGG | 0.655494 | 5.3:+540260 | MS.gene024959:CDS |
| CGACGCCGTCGAATACCGAT+CGG | 0.667352 | 5.3:-538559 | None:intergenic |
| CAGATGGGTGAGGACATAAG+TGG | 0.670930 | 5.3:+540619 | MS.gene024959:CDS |
| GAGGACATAAGTGGTGCGTG+CGG | 0.673751 | 5.3:+540628 | MS.gene024959:CDS |
| GGTGGTCAACCTCGTCCTGG+TGG | 0.679750 | 5.3:+538878 | MS.gene024959:CDS |
| AGTAAGAATGAAAATCCGAT+CGG | 0.681003 | 5.3:+538544 | None:intergenic |
| CTGCTCGACAATTTCACCAG+AGG | 0.696718 | 5.3:-538996 | None:intergenic |
| ACTCGTTTGGGTAAATACGG+TGG | 0.734631 | 5.3:+538860 | MS.gene024959:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAAAGAAGATATGATT+TGG | - | chr5.3:539360-539379 | None:intergenic | 15.0% |
| !!! | TAAGTTTCAGAAAATTTTAA+GGG | + | chr5.3:540564-540583 | MS.gene024959:CDS | 15.0% |
| !!! | TTGTTTTTATTCCATTAATT+GGG | + | chr5.3:539283-539302 | MS.gene024959:intron | 15.0% |
| !!! | TTTGTTTTTATTCCATTAAT+TGG | + | chr5.3:539282-539301 | MS.gene024959:intron | 15.0% |
| !!! | TTTTTTTTTTTTCTACTACA+GGG | + | chr5.3:539127-539146 | MS.gene024959:intron | 15.0% |
| !!! | TTTTTTTTTTTTTCTACTAC+AGG | + | chr5.3:539126-539145 | MS.gene024959:intron | 15.0% |
| !! | AAGAAACAATAATTCTGATT+GGG | + | chr5.3:538655-538674 | MS.gene024959:CDS | 20.0% |
| !!! | AAGTTTCAGAAAATTTTAAG+GGG | + | chr5.3:540565-540584 | MS.gene024959:CDS | 20.0% |
| !!! | ACATTTTAAAGTTTTTCAAG+TGG | + | chr5.3:539507-539526 | MS.gene024959:intron | 20.0% |
| !!! | AGATAAGTTAATTTTGTGTT+TGG | - | chr5.3:539677-539696 | None:intergenic | 20.0% |
| !!! | CTAAGTTTCAGAAAATTTTA+AGG | + | chr5.3:540563-540582 | MS.gene024959:CDS | 20.0% |
| ! | AACAAATTAATGCAAGTCAA+TGG | - | chr5.3:539268-539287 | None:intergenic | 25.0% |
| ! | ATTGAATACATAATGCTTGA+TGG | + | chr5.3:540198-540217 | MS.gene024959:CDS | 25.0% |
| ! | CAAAGTTCATTCCAATTATA+TGG | + | chr5.3:538618-538637 | MS.gene024959:CDS | 25.0% |
| ! | CATATAATTGGAATGAACTT+TGG | - | chr5.3:538620-538639 | None:intergenic | 25.0% |
| ! | GAAGAAACAATAATTCTGAT+TGG | + | chr5.3:538654-538673 | MS.gene024959:CDS | 25.0% |
| ! | TACTTCAAAATTCAAACTTC+AGG | - | chr5.3:540331-540350 | None:intergenic | 25.0% |
| ! | TACTTTATGTATTTCTTCTC+AGG | + | chr5.3:538910-538929 | MS.gene024959:CDS | 25.0% |
| ! | TTAATACCTTTCAACTCTAT+TGG | + | chr5.3:540499-540518 | MS.gene024959:CDS | 25.0% |
| ! | TTTAAAAGTAACTTATCCTC+TGG | + | chr5.3:538980-538999 | MS.gene024959:CDS | 25.0% |
| !! | CATTGTTAAGTCATTTCTTT+TGG | + | chr5.3:539837-539856 | MS.gene024959:intron | 25.0% |
| !! | TTTTGGTAAAAGTTCTTGAA+CGG | + | chr5.3:539854-539873 | MS.gene024959:intron | 25.0% |
| !!! | TATACCGATTTTTGAGAATT+CGG | - | chr5.3:538594-538613 | None:intergenic | 25.0% |
| AAGAGATGCTTCCATATAAT+TGG | - | chr5.3:538632-538651 | None:intergenic | 30.0% | |
| AAGATCTTCTATATCCGTTA+GGG | - | chr5.3:540701-540720 | None:intergenic | 30.0% | |
| AATGTACCAATAGAGTTGAA+AGG | - | chr5.3:540508-540527 | None:intergenic | 30.0% | |
| ACAATAATTCTGATTGGGAA+TGG | + | chr5.3:538660-538679 | MS.gene024959:CDS | 30.0% | |
| ATAATATTCGAACAACAGTC+CGG | + | chr5.3:540593-540612 | MS.gene024959:CDS | 30.0% | |
| ATGAGATATGATACTCGTTT+GGG | + | chr5.3:538848-538867 | MS.gene024959:CDS | 30.0% | |
| CAATAATTCTGATTGGGAAT+GGG | + | chr5.3:538661-538680 | MS.gene024959:CDS | 30.0% | |
| CACTGAAATAGTAATTGCTA+TGG | - | chr5.3:539383-539402 | None:intergenic | 30.0% | |
| CATTTCAGTTGTCATTGAAA+AGG | + | chr5.3:539215-539234 | MS.gene024959:CDS | 30.0% | |
| CATTTGCATCTATAATAGGT+TGG | + | chr5.3:539903-539922 | MS.gene024959:intron | 30.0% | |
| GACTGTTGTTCGAATATTAT+AGG | - | chr5.3:540593-540612 | None:intergenic | 30.0% | |
| GGTACATTTGCATCTATAAT+AGG | + | chr5.3:539899-539918 | MS.gene024959:intron | 30.0% | |
| TATGAGATATGATACTCGTT+TGG | + | chr5.3:538847-538866 | MS.gene024959:CDS | 30.0% | |
| TATTGTCTGAATTGTTATGC+AGG | + | chr5.3:540468-540487 | MS.gene024959:intron | 30.0% | |
| TGCAAGAATATCAAAGGAAA+AGG | + | chr5.3:540069-540088 | MS.gene024959:CDS | 30.0% | |
| TTACCATGAAGACAACATTA+CGG | - | chr5.3:539051-539070 | None:intergenic | 30.0% | |
| TTATGTATTTCTTCTCAGGT+TGG | + | chr5.3:538914-538933 | MS.gene024959:CDS | 30.0% | |
| ! | CATATGAAAAATCCTTTTCC+TGG | - | chr5.3:539733-539752 | None:intergenic | 30.0% |
| ! | CTTTTCAATGACAACTGAAA+TGG | - | chr5.3:539217-539236 | None:intergenic | 30.0% |
| ! | TAAAGAAGATATGATTTGGC+TGG | - | chr5.3:539356-539375 | None:intergenic | 30.0% |
| ! | TTGATATTTTACCGTTGAGA+CGG | - | chr5.3:539245-539264 | None:intergenic | 30.0% |
| ! | TTTCCCTTTGGAAAAACTAA+TGG | + | chr5.3:540040-540059 | MS.gene024959:CDS | 30.0% |
| !! | AAGAAATTTCTGGCTTATGA+AGG | + | chr5.3:539877-539896 | MS.gene024959:intron | 30.0% |
| !! | AGAAATTTCTGGCTTATGAA+GGG | + | chr5.3:539878-539897 | MS.gene024959:intron | 30.0% |
| !!! | AAAGTTTTTCAAGTGGTGTT+TGG | + | chr5.3:539514-539533 | MS.gene024959:intron | 30.0% |
| !!! | AAGCCATTAGTTTTTCCAAA+GGG | - | chr5.3:540046-540065 | None:intergenic | 30.0% |
| !!! | TTTTTTCTACTACAGGGAAT+GGG | + | chr5.3:539133-539152 | MS.gene024959:intron | 30.0% |
| !!! | TTTTTTTCTACTACAGGGAA+TGG | + | chr5.3:539132-539151 | MS.gene024959:intron | 30.0% |
| AATGAAGAGAAGAAGAGAGA+GGG | - | chr5.3:538748-538767 | None:intergenic | 35.0% | |
| ACAGCAGAATAGTTGTTCAA+AGG | - | chr5.3:539163-539182 | None:intergenic | 35.0% | |
| AGATCTTCTATATCCGTTAG+GGG | - | chr5.3:540700-540719 | None:intergenic | 35.0% | |
| AGGAATGAATAAGCTGAAGA+AGG | - | chr5.3:538707-538726 | None:intergenic | 35.0% | |
| ATGCTTGATCATAAGCTCTT+GGG | - | chr5.3:539651-539670 | None:intergenic | 35.0% | |
| CAAGATCTTCTATATCCGTT+AGG | - | chr5.3:540702-540721 | None:intergenic | 35.0% | |
| CGAACCGAATTCTCAAAAAT+CGG | + | chr5.3:538587-538606 | MS.gene024959:CDS | 35.0% | |
| CTTCACTGCAAGAATATCAA+AGG | + | chr5.3:540063-540082 | MS.gene024959:CDS | 35.0% | |
| CTTGTGATCAAGCTTGAAAA+CGG | + | chr5.3:538803-538822 | MS.gene024959:CDS | 35.0% | |
| GATACTCGTTTGGGTAAATA+CGG | + | chr5.3:538857-538876 | MS.gene024959:CDS | 35.0% | |
| TATCCGTAATGTTGTCTTCA+TGG | + | chr5.3:539045-539064 | MS.gene024959:CDS | 35.0% | |
| TCTTGAACGGAAGAAATTTC+TGG | + | chr5.3:539867-539886 | MS.gene024959:intron | 35.0% | |
| TTCAAGCTTGATCACAAGTT+TGG | - | chr5.3:538801-538820 | None:intergenic | 35.0% | |
| TTTGAACAACTATTCTGCTG+TGG | + | chr5.3:539162-539181 | MS.gene024959:CDS | 35.0% | |
| ! | GTGAACAGTTTCAGTGATTT+TGG | + | chr5.3:540141-540160 | MS.gene024959:intron | 35.0% |
| !! | TCTATTGCGAAAGCTAGTTT+TGG | - | chr5.3:539706-539725 | None:intergenic | 35.0% |
| !!! | GAAGCCATTAGTTTTTCCAA+AGG | - | chr5.3:540047-540066 | None:intergenic | 35.0% |
| AAAATCCGATCGGTATTCGA+CGG | + | chr5.3:538554-538573 | MS.gene024959:CDS | 40.0% | |
| AACTTACCTGACAAGTCTCT+CGG | + | chr5.3:540664-540683 | MS.gene024959:CDS | 40.0% | |
| AAGTGACGTTATCAGAAGAG+TGG | - | chr5.3:538778-538797 | None:intergenic | 40.0% | |
| AGAATCATGCAGAAGAGCTT+AGG | + | chr5.3:539570-539589 | MS.gene024959:intron | 40.0% | |
| ATGAAGAGAAGAAGAGAGAG+GGG | - | chr5.3:538747-538766 | None:intergenic | 40.0% | |
| ATTCTGTGCAACTGGAAGTA+TGG | + | chr5.3:538955-538974 | MS.gene024959:CDS | 40.0% | |
| CAAGAGTTTGCGACATTAAC+AGG | + | chr5.3:539446-539465 | MS.gene024959:intron | 40.0% | |
| CTGTTAATGTCGCAAACTCT+TGG | - | chr5.3:539448-539467 | None:intergenic | 40.0% | |
| GAAAAGGATTACCGTCTCAA+CGG | + | chr5.3:539231-539250 | MS.gene024959:CDS | 40.0% | |
| GAATGAAGAGAAGAAGAGAG+AGG | - | chr5.3:538749-538768 | None:intergenic | 40.0% | |
| GATCTTCTATATCCGTTAGG+GGG | - | chr5.3:540699-540718 | None:intergenic | 40.0% | |
| GATGCTTGATCATAAGCTCT+TGG | - | chr5.3:539652-539671 | None:intergenic | 40.0% | |
| GCAATAGAACTTCCAGGAAA+AGG | + | chr5.3:539718-539737 | MS.gene024959:intron | 40.0% | |
| GCTTCTCTATTCTCAACCAA+TGG | + | chr5.3:539616-539635 | MS.gene024959:intron | 40.0% | |
| GGTTGTAAATTCTGTGCAAC+TGG | + | chr5.3:538947-538966 | MS.gene024959:CDS | 40.0% | |
| GTGCAGTTCAACCCAATTAA+TGG | - | chr5.3:539297-539316 | None:intergenic | 40.0% | |
| TGAAATCTGAGAATTCCCTG+AGG | + | chr5.3:539401-539420 | MS.gene024959:intron | 40.0% | |
| TGCGACATTAACAGGTCTTA+GGG | + | chr5.3:539454-539473 | MS.gene024959:intron | 40.0% | |
| TGCTTGATCATAAGCTCTTG+GGG | - | chr5.3:539650-539669 | None:intergenic | 40.0% | |
| TTGCGACATTAACAGGTCTT+AGG | + | chr5.3:539453-539472 | MS.gene024959:intron | 40.0% | |
| TTTAATAGCACTGCGCAACA+AGG | - | chr5.3:540440-540459 | None:intergenic | 40.0% | |
| ! | ACATAATCTGCATTAGCCTC+AGG | - | chr5.3:539420-539439 | None:intergenic | 40.0% |
| ! | CATAATCTGCATTAGCCTCA+GGG | - | chr5.3:539419-539438 | None:intergenic | 40.0% |
| ! | GTTTTTCCAAAGGGAAAGCA+CGG | - | chr5.3:540037-540056 | None:intergenic | 40.0% |
| ! | TTCTGTGCAACTGGAAGTAT+GGG | + | chr5.3:538956-538975 | MS.gene024959:CDS | 40.0% |
| !! | TCTCAGGTTGGATGCAAAAT+GGG | + | chr5.3:538926-538945 | MS.gene024959:CDS | 40.0% |
| !! | TTCTCAGGTTGGATGCAAAA+TGG | + | chr5.3:538925-538944 | MS.gene024959:CDS | 40.0% |
| !! | TTTTTCCAAAGGGAAAGCAC+GGG | - | chr5.3:540036-540055 | None:intergenic | 40.0% |
| !!! | GAGGGGTTTTGAAGTTTGAA+CGG | - | chr5.3:538730-538749 | None:intergenic | 40.0% |
| AAGCTTCATAATGACGTGCC+TGG | + | chr5.3:539945-539964 | MS.gene024959:CDS | 45.0% | |
| AATCTGTGCGCATCATGACT+GGG | + | chr5.3:539188-539207 | MS.gene024959:CDS | 45.0% | |
| ACTCGTTTGGGTAAATACGG+TGG | + | chr5.3:538860-538879 | MS.gene024959:CDS | 45.0% | |
| CATGCAGAAGAGCTTAGGTT+AGG | + | chr5.3:539575-539594 | MS.gene024959:intron | 45.0% | |
| GCTTTCGCAATAGAACTTCC+AGG | + | chr5.3:539712-539731 | MS.gene024959:intron | 45.0% | |
| TAAGCTGAAGAAGGCAGAGA+AGG | - | chr5.3:538698-538717 | None:intergenic | 45.0% | |
| TATCTGGCAACGGATGTCTT+GGG | - | chr5.3:540003-540022 | None:intergenic | 45.0% | |
| TGGTGAAATTGTCGAGCAGT+TGG | + | chr5.3:539000-539019 | MS.gene024959:CDS | 45.0% | |
| TTATCTGGCAACGGATGTCT+TGG | - | chr5.3:540004-540023 | None:intergenic | 45.0% | |
| !!! | GGGTTTTGAAGTTTGAACGG+AGG | - | chr5.3:538727-538746 | None:intergenic | 45.0% |
| AAAGTAGCTCTCAGACCACC+AGG | - | chr5.3:538896-538915 | None:intergenic | 50.0% | |
| AACAACAGTCCGGAAGCAGA+TGG | + | chr5.3:540603-540622 | MS.gene024959:CDS | 50.0% | |
| ACAACAGTCCGGAAGCAGAT+GGG | + | chr5.3:540604-540623 | MS.gene024959:CDS | 50.0% | |
| CAGATGGGTGAGGACATAAG+TGG | + | chr5.3:540619-540638 | MS.gene024959:CDS | 50.0% | |
| CAGCAGCTTTCCTAGTAGGT+GGG | - | chr5.3:540247-540266 | None:intergenic | 50.0% | |
| CAGCAGGCATTATCTGGCAA+CGG | - | chr5.3:540013-540032 | None:intergenic | 50.0% | |
| CGGAAATGCTAACCCCCTAA+CGG | + | chr5.3:540684-540703 | MS.gene024959:CDS | 50.0% | |
| CTGCTCGACAATTTCACCAG+AGG | - | chr5.3:538999-539018 | None:intergenic | 50.0% | |
| GAATCTGTGCGCATCATGAC+TGG | + | chr5.3:539187-539206 | MS.gene024959:CDS | 50.0% | |
| GAGACTGCCAAGTTCAAACC+AGG | - | chr5.3:539966-539985 | None:intergenic | 50.0% | |
| GCAGAAGAGCTTAGGTTAGG+TGG | + | chr5.3:539578-539597 | MS.gene024959:intron | 50.0% | |
| GCATTTCCGAGAGACTTGTC+AGG | - | chr5.3:540673-540692 | None:intergenic | 50.0% | |
| GCTGCTGGAGACATTTGAAG+TGG | + | chr5.3:540260-540279 | MS.gene024959:CDS | 50.0% | |
| TCTCCAGCAGCTTTCCTAGT+AGG | - | chr5.3:540251-540270 | None:intergenic | 50.0% | |
| TCTTGGGGAAGCTGTTCCAT+TGG | - | chr5.3:539635-539654 | None:intergenic | 50.0% | |
| ! | TGACGTGCCTGGTTTGAACT+TGG | + | chr5.3:539956-539975 | MS.gene024959:CDS | 50.0% |
| AAGTGGTGCGTGCGGACAAT+TGG | + | chr5.3:540636-540655 | MS.gene024959:CDS | 55.0% | |
| CCACCTACTAGGAAAGCTGC+TGG | + | chr5.3:540245-540264 | MS.gene024959:CDS | 55.0% | |
| CCAGCAGCTTTCCTAGTAGG+TGG | - | chr5.3:540248-540267 | None:intergenic | 55.0% | |
| GAGGACATAAGTGGTGCGTG+CGG | + | chr5.3:540628-540647 | MS.gene024959:CDS | 55.0% | |
| TGTCCTCACCCATCTGCTTC+CGG | - | chr5.3:540615-540634 | None:intergenic | 55.0% | |
| AGTCCGGAAGCAGATGGGTG+AGG | + | chr5.3:540609-540628 | MS.gene024959:CDS | 60.0% | |
| CACGGGCAGCAGGCATTATC+TGG | - | chr5.3:540019-540038 | None:intergenic | 60.0% | |
| CGACGCCGTCGAATACCGAT+CGG | - | chr5.3:538562-538581 | None:intergenic | 60.0% | |
| GAGCAGCATGCCCACCTACT+AGG | + | chr5.3:540234-540253 | MS.gene024959:CDS | 60.0% | |
| TACGGTGGTCAACCTCGTCC+TGG | + | chr5.3:538875-538894 | MS.gene024959:CDS | 60.0% | |
| TGCTGCCCGTGCTTTCCCTT+TGG | + | chr5.3:540028-540047 | MS.gene024959:CDS | 60.0% | |
| TGGCAACGGATGTCTTGGGC+TGG | - | chr5.3:539999-540018 | None:intergenic | 60.0% | |
| TGGTGCGTGCGGACAATTGG+TGG | + | chr5.3:540639-540658 | MS.gene024959:CDS | 60.0% | |
| ! | AAAGGGAAAGCACGGGCAGC+AGG | - | chr5.3:540029-540048 | None:intergenic | 60.0% |
| GCTCTCAGACCACCAGGACG+AGG | - | chr5.3:538890-538909 | None:intergenic | 65.0% | |
| GGTGGTCAACCTCGTCCTGG+TGG | + | chr5.3:538878-538897 | MS.gene024959:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 538551 | 540729 | 538551 | ID=MS.gene024959 |
| chr5.3 | mRNA | 538551 | 540729 | 538551 | ID=MS.gene024959.t1;Parent=MS.gene024959 |
| chr5.3 | exon | 538551 | 539066 | 538551 | ID=MS.gene024959.t1.exon1;Parent=MS.gene024959.t1 |
| chr5.3 | CDS | 538551 | 539066 | 538551 | ID=cds.MS.gene024959.t1;Parent=MS.gene024959.t1 |
| chr5.3 | exon | 539148 | 539252 | 539148 | ID=MS.gene024959.t1.exon2;Parent=MS.gene024959.t1 |
| chr5.3 | CDS | 539148 | 539252 | 539148 | ID=cds.MS.gene024959.t1;Parent=MS.gene024959.t1 |
| chr5.3 | exon | 539921 | 540090 | 539921 | ID=MS.gene024959.t1.exon3;Parent=MS.gene024959.t1 |
| chr5.3 | CDS | 539921 | 540090 | 539921 | ID=cds.MS.gene024959.t1;Parent=MS.gene024959.t1 |
| chr5.3 | exon | 540182 | 540281 | 540182 | ID=MS.gene024959.t1.exon4;Parent=MS.gene024959.t1 |
| chr5.3 | CDS | 540182 | 540281 | 540182 | ID=cds.MS.gene024959.t1;Parent=MS.gene024959.t1 |
| chr5.3 | exon | 540490 | 540729 | 540490 | ID=MS.gene024959.t1.exon5;Parent=MS.gene024959.t1 |
| chr5.3 | CDS | 540490 | 540729 | 540490 | ID=cds.MS.gene024959.t1;Parent=MS.gene024959.t1 |
| Gene Sequence |
| Protein sequence |
