Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50173.t1 | XP_024639073.1 | 96.1 | 414 | 12 | 1 | 1 | 414 | 1 | 410 | 1.20E-221 | 778.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50173.t1 | B0C9F4 | 53.8 | 338 | 147 | 3 | 48 | 385 | 13 | 341 | 2.5e-98 | 360.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50173.t1 | A0A396HUE3 | 96.1 | 414 | 12 | 1 | 1 | 414 | 1 | 410 | 8.7e-222 | 778.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene50173 | MS.gene40523 | PPI |
| MS.gene50173 | MS.gene046940 | PPI |
| MS.gene50173 | MS.gene92356 | PPI |
| MS.gene50173 | MS.gene024959 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50173.t1 | MTR_5g079860 | 96.602 | 412 | 10 | 1 | 1 | 412 | 1 | 408 | 0.0 | 823 |
| MS.gene50173.t1 | MTR_5g005050 | 39.510 | 286 | 157 | 6 | 121 | 394 | 86 | 367 | 6.29e-54 | 184 |
| MS.gene50173.t1 | MTR_8g064490 | 36.857 | 350 | 202 | 10 | 45 | 384 | 81 | 421 | 1.77e-50 | 176 |
| MS.gene50173.t1 | MTR_5g005050 | 35.439 | 285 | 135 | 6 | 121 | 394 | 86 | 332 | 8.95e-41 | 148 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50173.t1 | AT2G39670 | 70.370 | 405 | 111 | 4 | 8 | 404 | 17 | 420 | 0.0 | 563 |
| MS.gene50173.t1 | AT2G39670 | 69.608 | 408 | 112 | 5 | 8 | 404 | 17 | 423 | 0.0 | 555 |
| MS.gene50173.t1 | AT3G19630 | 40.690 | 290 | 152 | 8 | 119 | 392 | 74 | 359 | 2.84e-57 | 192 |
| MS.gene50173.t1 | AT1G60230 | 35.000 | 360 | 218 | 9 | 33 | 384 | 82 | 433 | 2.26e-54 | 187 |
Find 110 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAACTTCTTTATTGTATT+TGG | 0.102949 | 5.4:-62710820 | None:intergenic |
| GGTGACTAATGTAGTCTTTA+TGG | 0.145319 | 5.4:+62709815 | MS.gene50173:CDS |
| CCTCAGTCTCAGGTTCTTCT+TGG | 0.188284 | 5.4:+62707970 | MS.gene50173:CDS |
| CAATTGTCTCCCTTAGTTTC+TGG | 0.213313 | 5.4:-62711127 | None:intergenic |
| TTCTTGTAGGATATACAAAT+TGG | 0.226433 | 5.4:+62710763 | MS.gene50173:intron |
| GAGCCTTCTATTGGATTAAA+AGG | 0.231828 | 5.4:-62711440 | None:intergenic |
| GGAATCCCAGCTTCCAAATA+TGG | 0.267536 | 5.4:+62711744 | MS.gene50173:CDS |
| CTGAGTTTCGCCGTCCTTAC+AGG | 0.268932 | 5.4:+62711462 | MS.gene50173:CDS |
| GTAACTGCAAGGTCCATATT+TGG | 0.284371 | 5.4:-62711757 | None:intergenic |
| TTGCAGTGCCTCAGGCATTT+AGG | 0.286812 | 5.4:+62708649 | MS.gene50173:intron |
| AATATGGACCTTGCAGTTAC+AGG | 0.294764 | 5.4:+62711760 | MS.gene50173:CDS |
| GGCACACCATTGCTTGAATA+AGG | 0.298869 | 5.4:+62709878 | MS.gene50173:CDS |
| CGAAACTCAGAGCCTTCTAT+TGG | 0.317774 | 5.4:-62711449 | None:intergenic |
| GTGCCCCAAGTACTGCCTTC+AGG | 0.344031 | 5.4:-62709860 | None:intergenic |
| GAACCCTTCTCATCTTCATT+AGG | 0.357570 | 5.4:-62709281 | None:intergenic |
| GCAAGCATTTGTTAATGCTT+TGG | 0.362056 | 5.4:+62711600 | MS.gene50173:CDS |
| GCTAAACTACTACATGAATA+TGG | 0.366452 | 5.4:+62711392 | MS.gene50173:CDS |
| GTCTCCCTTAGTTTCTGGTT+AGG | 0.377471 | 5.4:-62711122 | None:intergenic |
| TGCTTGCATTGCAGTGCCTC+AGG | 0.385823 | 5.4:+62708641 | MS.gene50173:intron |
| GTGACTAATGTAGTCTTTAT+GGG | 0.396455 | 5.4:+62709816 | MS.gene50173:CDS |
| TTTGCAGTTGTTATTGAAGT+TGG | 0.398916 | 5.4:+62709226 | MS.gene50173:intron |
| TGCATTTGCGTCCAGTCCTC+TGG | 0.405368 | 5.4:-62711656 | None:intergenic |
| CAATTTCCAGAAAACACCTT+TGG | 0.405431 | 5.4:+62711699 | MS.gene50173:CDS |
| TTGCGTCCAGTCCTCTGGTT+TGG | 0.406021 | 5.4:-62711651 | None:intergenic |
| AAACCTGCTCAACAATTTCA+TGG | 0.407549 | 5.4:-62709532 | None:intergenic |
| TATCATACTGCTTTCCTGTA+AGG | 0.409585 | 5.4:-62711476 | None:intergenic |
| CGCAGACTCTGACAACAATC+TGG | 0.425413 | 5.4:+62711723 | MS.gene50173:CDS |
| AGGAATGAGCTTGAGGAAGC+TGG | 0.428323 | 5.4:+62708669 | MS.gene50173:CDS |
| GCAACAACAGTGTTGAAAAC+TGG | 0.434797 | 5.4:-62708711 | None:intergenic |
| ATGCTCCTAACCAGAAACTA+AGG | 0.440088 | 5.4:+62711117 | MS.gene50173:CDS |
| TTAAACCTGAAGGCAGTACT+TGG | 0.440485 | 5.4:+62709855 | MS.gene50173:CDS |
| AACACTGTTGTTGCAACGGA+TGG | 0.445377 | 5.4:+62708720 | MS.gene50173:CDS |
| CAAGGTCCATATTTGGAAGC+TGG | 0.447943 | 5.4:-62711750 | None:intergenic |
| CAGCACAATTCCTCAGTCTC+AGG | 0.454273 | 5.4:+62707960 | MS.gene50173:CDS |
| GAGCCATGAAATTGTTGAGC+AGG | 0.455181 | 5.4:+62709529 | MS.gene50173:CDS |
| AATGTAGTCTTTATGGGAAT+GGG | 0.461630 | 5.4:+62709822 | MS.gene50173:CDS |
| GTGCGAGGGGCATGGAATAG+TGG | 0.472551 | 5.4:-62707861 | None:intergenic |
| TCTTGTAGGATATACAAATT+GGG | 0.477367 | 5.4:+62710764 | MS.gene50173:intron |
| AGAAGAAGAAGAAGTTGCGA+AGG | 0.479599 | 5.4:-62707923 | None:intergenic |
| TGCAACGGATGGAACTGTTA+AGG | 0.495578 | 5.4:+62708731 | MS.gene50173:CDS |
| AAGGTCCATATTTGGAAGCT+GGG | 0.504412 | 5.4:-62711749 | None:intergenic |
| GCGGCACGTGTGCGAGGTGA+AGG | 0.504678 | 5.4:-62707895 | None:intergenic |
| CATTCACCTTATTCAAGCAA+TGG | 0.504951 | 5.4:-62709884 | None:intergenic |
| AATTTACCTGACCAAAATCA+AGG | 0.507652 | 5.4:-62708023 | None:intergenic |
| AGAAGAAGTTGCGAAGGAAA+TGG | 0.508278 | 5.4:-62707917 | None:intergenic |
| TAATGTAGTCTTTATGGGAA+TGG | 0.509539 | 5.4:+62709821 | MS.gene50173:CDS |
| CAATTACCTCACAGCTAAAG+TGG | 0.519075 | 5.4:-62710860 | None:intergenic |
| CACCACACGTGCGAGGGGCA+TGG | 0.521716 | 5.4:-62707869 | None:intergenic |
| GTTTCTGGTTAGGAGCATGT+AGG | 0.523254 | 5.4:-62711112 | None:intergenic |
| GCGTTTGAACACCTCCTCAA+TGG | 0.524945 | 5.4:-62709790 | None:intergenic |
| GACAGCATGTGTCTCATCAC+AGG | 0.527434 | 5.4:+62709313 | MS.gene50173:CDS |
| TAAACCTGAAGGCAGTACTT+GGG | 0.530652 | 5.4:+62709856 | MS.gene50173:CDS |
| TCTTCTTGGCTTATCCGAAA+CGG | 0.535280 | 5.4:+62707984 | MS.gene50173:CDS |
| TTCCATGCCCCTCGCACGTG+TGG | 0.543811 | 5.4:+62707867 | MS.gene50173:CDS |
| TTTATCATCTTATATACAAG+AGG | 0.550624 | 5.4:+62708178 | MS.gene50173:CDS |
| CTTGCATAAGTGCATCCAAT+GGG | 0.551233 | 5.4:-62711169 | None:intergenic |
| AAGTGCAAAGTCTTACCCAT+TGG | 0.552672 | 5.4:+62711154 | MS.gene50173:CDS |
| TGCACTTATGCAAGACTGCA+AGG | 0.557442 | 5.4:+62711178 | MS.gene50173:CDS |
| ATGCAGCTTGTGGTCAGCTA+CGG | 0.561024 | 5.4:+62711674 | MS.gene50173:CDS |
| ACCTAAAAGTGCATATTCAA+AGG | 0.561121 | 5.4:-62711231 | None:intergenic |
| AGATATTCAAGAGTTTACTC+AGG | 0.562671 | 5.4:+62708209 | MS.gene50173:CDS |
| TTTCAACACTGTTGTTGCAA+CGG | 0.563769 | 5.4:+62708716 | MS.gene50173:CDS |
| GGCATTTAGGAATGAGCTTG+AGG | 0.565772 | 5.4:+62708662 | MS.gene50173:CDS |
| TCTGGTTTGGCGTACACTAG+TGG | 0.566254 | 5.4:-62711638 | None:intergenic |
| CTTCCGCGAAACAAGTAGAC+GGG | 0.568795 | 5.4:+62711205 | MS.gene50173:CDS |
| TATTCCTAATGAAGATGAGA+AGG | 0.569257 | 5.4:+62709277 | MS.gene50173:CDS |
| AACAGATTGATTGAAACTGT+TGG | 0.569401 | 5.4:+62709254 | MS.gene50173:CDS |
| CCAAGAAGAACCTGAGACTG+AGG | 0.569865 | 5.4:-62707970 | None:intergenic |
| TTGTCAGAGTCTGCGGCCAA+AGG | 0.571073 | 5.4:-62711715 | None:intergenic |
| ATGAGCTTGAGGAAGCTGGA+TGG | 0.572364 | 5.4:+62708673 | MS.gene50173:CDS |
| AATGGGTAAGACTTTGCACT+TGG | 0.575944 | 5.4:-62711152 | None:intergenic |
| AAACCCGTCTACTTGTTTCG+CGG | 0.576482 | 5.4:-62711208 | None:intergenic |
| GTGATGAGACACATGCTGTC+AGG | 0.578912 | 5.4:-62709310 | None:intergenic |
| CAGATTGTTGTCAGAGTCTG+CGG | 0.584126 | 5.4:-62711722 | None:intergenic |
| GATATTCAAGAGTTTACTCA+GGG | 0.584950 | 5.4:+62708210 | MS.gene50173:CDS |
| TGTACGCCAAACCAGAGGAC+TGG | 0.586064 | 5.4:+62711645 | MS.gene50173:CDS |
| TTGAGGAGGTGTTCAAACGC+AGG | 0.587360 | 5.4:+62709793 | MS.gene50173:CDS |
| ATGATGACTATCTCCACCGT+GGG | 0.589221 | 5.4:+62710793 | MS.gene50173:CDS |
| TGAACAGGTCTTGGCCATTG+AGG | 0.590271 | 5.4:+62709776 | MS.gene50173:intron |
| TGCTCCTAACCAGAAACTAA+GGG | 0.592577 | 5.4:+62711118 | MS.gene50173:CDS |
| CTACTACATGAATATGGCAG+TGG | 0.597183 | 5.4:+62711398 | MS.gene50173:CDS |
| AAGCTGGATGGAAGGTCGGA+CGG | 0.599050 | 5.4:+62708685 | MS.gene50173:CDS |
| TCATCTTATATACAAGAGGA+AGG | 0.599803 | 5.4:+62708182 | MS.gene50173:CDS |
| TGAACCAATGTTAAACCTGA+AGG | 0.600380 | 5.4:+62709845 | MS.gene50173:CDS |
| GAGGAAGCTGGATGGAAGGT+CGG | 0.601140 | 5.4:+62708681 | MS.gene50173:CDS |
| AAGGACGCACCACACGTGCG+AGG | 0.603642 | 5.4:-62707876 | None:intergenic |
| GCTTGAGGAAGCTGGATGGA+AGG | 0.604593 | 5.4:+62708677 | MS.gene50173:CDS |
| GAAATGGCGGCACGTGTGCG+AGG | 0.604749 | 5.4:-62707901 | None:intergenic |
| ACTGCCTTCAGGTTTAACAT+TGG | 0.604771 | 5.4:-62709849 | None:intergenic |
| GGACGCACCACACGTGCGAG+GGG | 0.610180 | 5.4:-62707874 | None:intergenic |
| AGGACGCACCACACGTGCGA+GGG | 0.610726 | 5.4:-62707875 | None:intergenic |
| AAACCTGAAGGCAGTACTTG+GGG | 0.612474 | 5.4:+62709857 | MS.gene50173:CDS |
| ATTTACCTGACCAAAATCAA+GGG | 0.615901 | 5.4:-62708022 | None:intergenic |
| TGAGGAGGTGTTCAAACGCA+GGG | 0.618525 | 5.4:+62709794 | MS.gene50173:CDS |
| TTCAATCCACTTTAGCTGTG+AGG | 0.629054 | 5.4:+62710854 | MS.gene50173:CDS |
| AGCAGCTGGAATCAATGACT+CGG | 0.632061 | 5.4:+62711349 | MS.gene50173:intron |
| TCTTGCATAAGTGCATCCAA+TGG | 0.635870 | 5.4:-62711170 | None:intergenic |
| ATACTGCTTTCCTGTAAGGA+CGG | 0.636058 | 5.4:-62711472 | None:intergenic |
| ACAGGTCTTGGCCATTGAGG+AGG | 0.637192 | 5.4:+62709779 | MS.gene50173:intron |
| ATTCCTAATGAAGATGAGAA+GGG | 0.637233 | 5.4:+62709278 | MS.gene50173:CDS |
| AGCTCATTCCTAAATGCCTG+AGG | 0.647100 | 5.4:-62708657 | None:intergenic |
| GCAATCAACCTGTAACTGCA+AGG | 0.653477 | 5.4:-62711768 | None:intergenic |
| ACTTCCGCGAAACAAGTAGA+CGG | 0.656727 | 5.4:+62711204 | MS.gene50173:CDS |
| GACTGAGGAATTGTGCTGCG+AGG | 0.664759 | 5.4:-62707955 | None:intergenic |
| AGAAGTTGCGAAGGAAATGG+CGG | 0.675289 | 5.4:-62707914 | None:intergenic |
| CTGGACGCAAATGCAGCTTG+TGG | 0.692862 | 5.4:+62711664 | MS.gene50173:CDS |
| GATGACTATCTCCACCGTGG+GGG | 0.705173 | 5.4:+62710795 | MS.gene50173:CDS |
| ACTAGTGTACGCCAAACCAG+AGG | 0.706693 | 5.4:+62711640 | MS.gene50173:CDS |
| TGATGACTATCTCCACCGTG+GGG | 0.711405 | 5.4:+62710794 | MS.gene50173:CDS |
| AATGATGACTATCTCCACCG+TGG | 0.716532 | 5.4:+62710792 | MS.gene50173:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAATAAATTAATAATGA+AGG | - | chr5.4:62708068-62708087 | None:intergenic | 10.0% |
| !! | TTGAATAAATTAATAATGAA+GGG | - | chr5.4:62708067-62708086 | None:intergenic | 10.0% |
| !!! | CAATTTTATCAAATTATTAT+GGG | + | chr5.4:62708347-62708366 | MS.gene50173:intron | 10.0% |
| !!! | TAATGTTAGATTTTTATATT+GGG | - | chr5.4:62710176-62710195 | None:intergenic | 10.0% |
| !!! | TCAATTTTATCAAATTATTA+TGG | + | chr5.4:62708346-62708365 | MS.gene50173:intron | 10.0% |
| !!! | TTATTTTATCAAATTATTCA+TGG | + | chr5.4:62708541-62708560 | MS.gene50173:intron | 10.0% |
| !! | AAATAAAAATGTTAACAGAA+AGG | + | chr5.4:62709646-62709665 | MS.gene50173:intron | 15.0% |
| !! | AAATTAAAAACAACAACAAT+AGG | - | chr5.4:62708783-62708802 | None:intergenic | 15.0% |
| !! | TAAACACGATTTATAATTTA+TGG | + | chr5.4:62711521-62711540 | MS.gene50173:intron | 15.0% |
| !! | TCATCTTATCAAATTATTAT+CGG | + | chr5.4:62708431-62708450 | MS.gene50173:intron | 15.0% |
| !!! | AATTAGTTATGTTTTATGTT+TGG | + | chr5.4:62710373-62710392 | MS.gene50173:intron | 15.0% |
| !!! | GTAATGTTAGATTTTTATAT+TGG | - | chr5.4:62710177-62710196 | None:intergenic | 15.0% |
| !! | AAAATATTCATGCATACATA+TGG | + | chr5.4:62710451-62710470 | MS.gene50173:intron | 20.0% |
| !! | AACATTATCATTTAAACTCT+GGG | + | chr5.4:62710027-62710046 | MS.gene50173:intron | 20.0% |
| !! | AGTTCTATAGAAATTAAAAC+AGG | + | chr5.4:62710332-62710351 | MS.gene50173:intron | 20.0% |
| !! | TAACATTATCATTTAAACTC+TGG | + | chr5.4:62710026-62710045 | MS.gene50173:intron | 20.0% |
| !! | TTAATCCAAACTTTGTAATT+TGG | + | chr5.4:62711572-62711591 | MS.gene50173:intron | 20.0% |
| !! | TTTATCATCTTATATACAAG+AGG | + | chr5.4:62708178-62708197 | MS.gene50173:CDS | 20.0% |
| !!! | ATTCTTGTTTTTCTATTTGT+TGG | + | chr5.4:62709195-62709214 | MS.gene50173:intron | 20.0% |
| !!! | GTAGCTTTTAGTTTTTTTAA+AGG | + | chr5.4:62708955-62708974 | MS.gene50173:intron | 20.0% |
| !!! | TAAACTTATTTTGTTGTTGT+TGG | + | chr5.4:62708250-62708269 | MS.gene50173:intron | 20.0% |
| !!! | TAATTTGCTCTTTTATGTTA+TGG | - | chr5.4:62710358-62710377 | None:intergenic | 20.0% |
| !!! | TGAAAGTATTAACTTTTCAA+CGG | + | chr5.4:62708602-62708621 | MS.gene50173:intron | 20.0% |
| !!! | TGTAATATTATCTTTTCATG+CGG | + | chr5.4:62710261-62710280 | MS.gene50173:intron | 20.0% |
| !!! | TTACAAGCAAATATTTGTTA+AGG | - | chr5.4:62709936-62709955 | None:intergenic | 20.0% |
| !!! | TTGTTGTTGTTTTTAATTTC+TGG | + | chr5.4:62708784-62708803 | MS.gene50173:intron | 20.0% |
| !!! | TTTAATTTCTATAGAACTTC+TGG | - | chr5.4:62710330-62710349 | None:intergenic | 20.0% |
| ! | AAAAATGAGATCAATGTCAA+TGG | - | chr5.4:62709053-62709072 | None:intergenic | 25.0% |
| ! | AAAATGTTAACAGAAAGGAA+AGG | + | chr5.4:62709651-62709670 | MS.gene50173:intron | 25.0% |
| ! | AAACTACTCTAATGTATCTA+TGG | - | chr5.4:62709562-62709581 | None:intergenic | 25.0% |
| ! | AATTTATTTATGGATCACGT+GGG | - | chr5.4:62709597-62709616 | None:intergenic | 25.0% |
| ! | ACTTGGTATTCTTAAGAATA+AGG | + | chr5.4:62709109-62709128 | MS.gene50173:intron | 25.0% |
| ! | ATCAGTGCATAAAAAAATCA+AGG | - | chr5.4:62709177-62709196 | None:intergenic | 25.0% |
| ! | ATCCATAAATAAATTGCCTA+AGG | + | chr5.4:62709602-62709621 | MS.gene50173:intron | 25.0% |
| ! | ATGGACATAACAAAAACAAA+TGG | - | chr5.4:62709425-62709444 | None:intergenic | 25.0% |
| ! | CTAAATATCCAAATAACAGA+TGG | - | chr5.4:62709444-62709463 | None:intergenic | 25.0% |
| ! | CTTGGTATTCTTAAGAATAA+GGG | + | chr5.4:62709110-62709129 | MS.gene50173:intron | 25.0% |
| ! | GCTAACTTCTTTATTGTATT+TGG | - | chr5.4:62710823-62710842 | None:intergenic | 25.0% |
| ! | TCTTGTAGGATATACAAATT+GGG | + | chr5.4:62710764-62710783 | MS.gene50173:intron | 25.0% |
| ! | TTCTTGTAGGATATACAAAT+TGG | + | chr5.4:62710763-62710782 | MS.gene50173:intron | 25.0% |
| !! | ACATTGAATTTTATGTGAAC+AGG | + | chr5.4:62709761-62709780 | MS.gene50173:intron | 25.0% |
| !! | ATACCTTTTAATCCAATAGA+AGG | + | chr5.4:62711437-62711456 | MS.gene50173:CDS | 25.0% |
| !! | ATTTTTCTTAGCAAGGTTTT+AGG | + | chr5.4:62708145-62708164 | MS.gene50173:intron | 25.0% |
| !! | CATCTGTTATTTGGATATTT+AGG | + | chr5.4:62709442-62709461 | MS.gene50173:intron | 25.0% |
| !! | CCATCAAATGATATATTTTG+CGG | - | chr5.4:62711009-62711028 | None:intergenic | 25.0% |
| !! | TAAAGCAATGAGATCATTTT+CGG | + | chr5.4:62709686-62709705 | MS.gene50173:intron | 25.0% |
| !! | TGATTGAATTTTTCTTAGCA+AGG | + | chr5.4:62708138-62708157 | MS.gene50173:intron | 25.0% |
| !! | TGTTATTTGGATATTTAGGT+AGG | + | chr5.4:62709446-62709465 | MS.gene50173:intron | 25.0% |
| !! | TTTTTAAACTTATGTGACAC+TGG | + | chr5.4:62708898-62708917 | MS.gene50173:intron | 25.0% |
| !! | TTTTTCTTAGCAAGGTTTTA+GGG | + | chr5.4:62708146-62708165 | MS.gene50173:intron | 25.0% |
| !!! | AAAGTATTAACTTTTCAACG+GGG | + | chr5.4:62708604-62708623 | MS.gene50173:intron | 25.0% |
| !!! | ACTCATTGGTTTTTACTTAT+TGG | + | chr5.4:62710050-62710069 | MS.gene50173:intron | 25.0% |
| !!! | ATATTTTTATGCATGTGAGA+CGG | - | chr5.4:62710438-62710457 | None:intergenic | 25.0% |
| !!! | CTCATTGGTTTTTACTTATT+GGG | + | chr5.4:62710051-62710070 | MS.gene50173:intron | 25.0% |
| !!! | GAAAGTATTAACTTTTCAAC+GGG | + | chr5.4:62708603-62708622 | MS.gene50173:intron | 25.0% |
| !!! | GATATTAACTTGCTTGTTAA+AGG | + | chr5.4:62709136-62709155 | MS.gene50173:intron | 25.0% |
| !!! | TGATTCAAGTTGTTTTCTTT+TGG | + | chr5.4:62709080-62709099 | MS.gene50173:intron | 25.0% |
| !!! | TTTTCTTTTGGTGTTTTACT+TGG | + | chr5.4:62709092-62709111 | MS.gene50173:intron | 25.0% |
| AAAACAACTTGAATCATTGC+CGG | - | chr5.4:62709076-62709095 | None:intergenic | 30.0% | |
| AACAGATTGATTGAAACTGT+TGG | + | chr5.4:62709254-62709273 | MS.gene50173:CDS | 30.0% | |
| AATGTAGTCTTTATGGGAAT+GGG | + | chr5.4:62709822-62709841 | MS.gene50173:CDS | 30.0% | |
| AATTTACCTGACCAAAATCA+AGG | - | chr5.4:62708026-62708045 | None:intergenic | 30.0% | |
| ACCTACCAAATTACAAAGTT+TGG | - | chr5.4:62711580-62711599 | None:intergenic | 30.0% | |
| ACCTCTCTTTATAAACTCAT+TGG | - | chr5.4:62710112-62710131 | None:intergenic | 30.0% | |
| AGACATCTCAAGATATAAAG+TGG | - | chr5.4:62709003-62709022 | None:intergenic | 30.0% | |
| AGATATTCAAGAGTTTACTC+AGG | + | chr5.4:62708209-62708228 | MS.gene50173:CDS | 30.0% | |
| AGTTGAATCTAAATTGCCTT+AGG | - | chr5.4:62709621-62709640 | None:intergenic | 30.0% | |
| ATTCCATCTTAGTAAGTGTT+AGG | + | chr5.4:62710210-62710229 | MS.gene50173:intron | 30.0% | |
| ATTCCTAATGAAGATGAGAA+GGG | + | chr5.4:62709278-62709297 | MS.gene50173:CDS | 30.0% | |
| ATTTACCTGACCAAAATCAA+GGG | - | chr5.4:62708025-62708044 | None:intergenic | 30.0% | |
| CAAATTACATTTGCGTTTAG+AGG | - | chr5.4:62709027-62709046 | None:intergenic | 30.0% | |
| CAATTTATTTATGGATCACG+TGG | - | chr5.4:62709598-62709617 | None:intergenic | 30.0% | |
| CCGCAAAATATATCATTTGA+TGG | + | chr5.4:62711006-62711025 | MS.gene50173:intron | 30.0% | |
| CGTCAAAAGAAATCATTGAT+CGG | + | chr5.4:62710479-62710498 | MS.gene50173:intron | 30.0% | |
| GATATTCAAGAGTTTACTCA+GGG | + | chr5.4:62708210-62708229 | MS.gene50173:CDS | 30.0% | |
| GCTAAACTACTACATGAATA+TGG | + | chr5.4:62711392-62711411 | MS.gene50173:CDS | 30.0% | |
| GTATTCTTAAGAATAAGGGT+AGG | + | chr5.4:62709114-62709133 | MS.gene50173:intron | 30.0% | |
| GTGACTAATGTAGTCTTTAT+GGG | + | chr5.4:62709816-62709835 | MS.gene50173:CDS | 30.0% | |
| TAATGTAGTCTTTATGGGAA+TGG | + | chr5.4:62709821-62709840 | MS.gene50173:CDS | 30.0% | |
| TATTCCTAATGAAGATGAGA+AGG | + | chr5.4:62709277-62709296 | MS.gene50173:CDS | 30.0% | |
| TCATCTTATATACAAGAGGA+AGG | + | chr5.4:62708182-62708201 | MS.gene50173:CDS | 30.0% | |
| TCCAAACTTTGTAATTTGGT+AGG | + | chr5.4:62711576-62711595 | MS.gene50173:intron | 30.0% | |
| TGCCTTAGGCAATTTATTTA+TGG | - | chr5.4:62709607-62709626 | None:intergenic | 30.0% | |
| TGTTATGTCCATCTGTTATT+TGG | + | chr5.4:62709433-62709452 | MS.gene50173:intron | 30.0% | |
| TTGTGATACCCCATAAAAAA+TGG | - | chr5.4:62708820-62708839 | None:intergenic | 30.0% | |
| TTTACTCATTCATGTCAGTT+AGG | + | chr5.4:62708465-62708484 | MS.gene50173:intron | 30.0% | |
| ! | AAAGCAATGAGATCATTTTC+GGG | + | chr5.4:62709687-62709706 | MS.gene50173:intron | 30.0% |
| ! | AATATTATCTTTTCATGCGG+AGG | + | chr5.4:62710264-62710283 | MS.gene50173:intron | 30.0% |
| ! | AATTTTATGTGAACAGGTCT+TGG | + | chr5.4:62709767-62709786 | MS.gene50173:intron | 30.0% |
| ! | ACCTAAAAGTGCATATTCAA+AGG | - | chr5.4:62711234-62711253 | None:intergenic | 30.0% |
| ! | CGATCAATGATTTCTTTTGA+CGG | - | chr5.4:62710481-62710500 | None:intergenic | 30.0% |
| ! | GATCAGAATAAAGTTTTGCT+TGG | + | chr5.4:62710647-62710666 | MS.gene50173:intron | 30.0% |
| ! | TCCTTTGAATATGCACTTTT+AGG | + | chr5.4:62711230-62711249 | MS.gene50173:CDS | 30.0% |
| ! | TTTAGAGTTTAAACCTGCAA+CGG | + | chr5.4:62709981-62710000 | MS.gene50173:intron | 30.0% |
| ! | TTTGCAGTTGTTATTGAAGT+TGG | + | chr5.4:62709226-62709245 | MS.gene50173:intron | 30.0% |
| !! | TAACTTGCTTGTTAAAGGAT+GGG | + | chr5.4:62709141-62709160 | MS.gene50173:intron | 30.0% |
| !! | TGAATATGCACTTTTAGGTA+CGG | + | chr5.4:62711235-62711254 | MS.gene50173:intron | 30.0% |
| !! | TGACATTGATCTCATTTTTC+CGG | + | chr5.4:62709054-62709073 | MS.gene50173:intron | 30.0% |
| !! | TTAACTTGCTTGTTAAAGGA+TGG | + | chr5.4:62709140-62709159 | MS.gene50173:intron | 30.0% |
| !! | TTTTCTTAGCAAGGTTTTAG+GGG | + | chr5.4:62708147-62708166 | MS.gene50173:intron | 30.0% |
| !!! | AAGTTTTTGAAGTTCCGTTT+CGG | - | chr5.4:62708001-62708020 | None:intergenic | 30.0% |
| !!! | TCATTTGATGGCTTTTTTAG+TGG | + | chr5.4:62711018-62711037 | MS.gene50173:intron | 30.0% |
| !!! | TCCTGCTAACCATTTTTTAT+GGG | + | chr5.4:62708808-62708827 | MS.gene50173:intron | 30.0% |
| !!! | TTCCTGCTAACCATTTTTTA+TGG | + | chr5.4:62708807-62708826 | MS.gene50173:intron | 30.0% |
| AAACCTGCTCAACAATTTCA+TGG | - | chr5.4:62709535-62709554 | None:intergenic | 35.0% | |
| ACTGACAAGATCAGAATCAA+GGG | - | chr5.4:62710886-62710905 | None:intergenic | 35.0% | |
| CAAACATAATGACAGGAAAG+TGG | - | chr5.4:62711329-62711348 | None:intergenic | 35.0% | |
| CAATTTCCAGAAAACACCTT+TGG | + | chr5.4:62711699-62711718 | MS.gene50173:CDS | 35.0% | |
| CATTCACCTTATTCAAGCAA+TGG | - | chr5.4:62709887-62709906 | None:intergenic | 35.0% | |
| GAACCTAACACTTACTAAGA+TGG | - | chr5.4:62710216-62710235 | None:intergenic | 35.0% | |
| GAGCCTTCTATTGGATTAAA+AGG | - | chr5.4:62711443-62711462 | None:intergenic | 35.0% | |
| GATCTTGTCAGTCAAGAATT+AGG | + | chr5.4:62710894-62710913 | MS.gene50173:intron | 35.0% | |
| GCCAATGAGTTTATAAAGAG+AGG | + | chr5.4:62710108-62710127 | MS.gene50173:intron | 35.0% | |
| GGTGACTAATGTAGTCTTTA+TGG | + | chr5.4:62709815-62709834 | MS.gene50173:CDS | 35.0% | |
| GTATGTAAGTGTGCTAATGT+TGG | + | chr5.4:62710727-62710746 | MS.gene50173:intron | 35.0% | |
| TATCATACTGCTTTCCTGTA+AGG | - | chr5.4:62711479-62711498 | None:intergenic | 35.0% | |
| TGAACCAATGTTAAACCTGA+AGG | + | chr5.4:62709845-62709864 | MS.gene50173:CDS | 35.0% | |
| TTCAATGTTATCCTGCTTTG+TGG | - | chr5.4:62709749-62709768 | None:intergenic | 35.0% | |
| TTGCACTAAATAGCGTATCA+CGG | - | chr5.4:62710530-62710549 | None:intergenic | 35.0% | |
| TTTCAACACTGTTGTTGCAA+CGG | + | chr5.4:62708716-62708735 | MS.gene50173:CDS | 35.0% | |
| ! | AGGGACATGGATTTCTTTTA+TGG | + | chr5.4:62710287-62710306 | MS.gene50173:intron | 35.0% |
| ! | CAAAAACTTGCCCTTGATTT+TGG | + | chr5.4:62708012-62708031 | MS.gene50173:CDS | 35.0% |
| ! | GCAAGCATTTGTTAATGCTT+TGG | + | chr5.4:62711600-62711619 | MS.gene50173:CDS | 35.0% |
| !! | AAAACCGATTTGTAAGGTGA+GGG | - | chr5.4:62710137-62710156 | None:intergenic | 35.0% |
| !! | AGTTTCAGTTTAGCATTGAC+AGG | + | chr5.4:62708389-62708408 | MS.gene50173:intron | 35.0% |
| !! | ATTTAAACTCTGGGACTCAT+TGG | + | chr5.4:62710036-62710055 | MS.gene50173:intron | 35.0% |
| !! | CACAAAAAGAGCATTTCAGA+GGG | - | chr5.4:62709475-62709494 | None:intergenic | 35.0% |
| !!! | CCTGCTAACCATTTTTTATG+GGG | + | chr5.4:62708809-62708828 | MS.gene50173:intron | 35.0% |
| !!! | TTTCTTAGCAAGGTTTTAGG+GGG | + | chr5.4:62708148-62708167 | MS.gene50173:intron | 35.0% |
| AAGGTCCATATTTGGAAGCT+GGG | - | chr5.4:62711752-62711771 | None:intergenic | 40.0% | |
| AAGTGCAAAGTCTTACCCAT+TGG | + | chr5.4:62711154-62711173 | MS.gene50173:CDS | 40.0% | |
| AATATGGACCTTGCAGTTAC+AGG | + | chr5.4:62711760-62711779 | MS.gene50173:CDS | 40.0% | |
| AATGGGTAAGACTTTGCACT+TGG | - | chr5.4:62711155-62711174 | None:intergenic | 40.0% | |
| AGAAGAAGAAGAAGTTGCGA+AGG | - | chr5.4:62707926-62707945 | None:intergenic | 40.0% | |
| AGAAGAAGTTGCGAAGGAAA+TGG | - | chr5.4:62707920-62707939 | None:intergenic | 40.0% | |
| AGCTGCTCAAACATAATGAC+AGG | - | chr5.4:62711336-62711355 | None:intergenic | 40.0% | |
| AGGCTGATGGAAGATACAAA+AGG | - | chr5.4:62711095-62711114 | None:intergenic | 40.0% | |
| AGGTTCTCTTGCTACTGAAT+TGG | + | chr5.4:62710230-62710249 | MS.gene50173:intron | 40.0% | |
| AGTGTGCTAATGTTGGATTC+TGG | + | chr5.4:62710734-62710753 | MS.gene50173:intron | 40.0% | |
| ATACTGCTTTCCTGTAAGGA+CGG | - | chr5.4:62711475-62711494 | None:intergenic | 40.0% | |
| ATGCTCCTAACCAGAAACTA+AGG | + | chr5.4:62711117-62711136 | MS.gene50173:CDS | 40.0% | |
| ATGTGTAATGACACTGACAC+AGG | + | chr5.4:62708293-62708312 | MS.gene50173:intron | 40.0% | |
| CAATTACCTCACAGCTAAAG+TGG | - | chr5.4:62710863-62710882 | None:intergenic | 40.0% | |
| CAATTGTCTCCCTTAGTTTC+TGG | - | chr5.4:62711130-62711149 | None:intergenic | 40.0% | |
| CCCCATAAAAAATGGTTAGC+AGG | - | chr5.4:62708812-62708831 | None:intergenic | 40.0% | |
| CTACTACATGAATATGGCAG+TGG | + | chr5.4:62711398-62711417 | MS.gene50173:CDS | 40.0% | |
| CTTGCATAAGTGCATCCAAT+GGG | - | chr5.4:62711172-62711191 | None:intergenic | 40.0% | |
| GAACCCTTCTCATCTTCATT+AGG | - | chr5.4:62709284-62709303 | None:intergenic | 40.0% | |
| GACACAGGATATTACACACA+TGG | + | chr5.4:62708308-62708327 | MS.gene50173:intron | 40.0% | |
| GACTGACAAGATCAGAATCA+AGG | - | chr5.4:62710887-62710906 | None:intergenic | 40.0% | |
| GGCTGATGGAAGATACAAAA+GGG | - | chr5.4:62711094-62711113 | None:intergenic | 40.0% | |
| GTAACTGCAAGGTCCATATT+TGG | - | chr5.4:62711760-62711779 | None:intergenic | 40.0% | |
| GTGATTGAATGTAACCACAC+AGG | - | chr5.4:62708519-62708538 | None:intergenic | 40.0% | |
| GTTCGTGTTAGTGTTGTGTT+TGG | + | chr5.4:62708569-62708588 | MS.gene50173:intron | 40.0% | |
| TAAACCTGAAGGCAGTACTT+GGG | + | chr5.4:62709856-62709875 | MS.gene50173:CDS | 40.0% | |
| TCATTAACCTTACTGCACGA+GGG | - | chr5.4:62711287-62711306 | None:intergenic | 40.0% | |
| TCTTCTTGGCTTATCCGAAA+CGG | + | chr5.4:62707984-62708003 | MS.gene50173:CDS | 40.0% | |
| TCTTGCATAAGTGCATCCAA+TGG | - | chr5.4:62711173-62711192 | None:intergenic | 40.0% | |
| TGCTAATGTTGGATTCTGGT+TGG | + | chr5.4:62710738-62710757 | MS.gene50173:intron | 40.0% | |
| TGCTCCTAACCAGAAACTAA+GGG | + | chr5.4:62711118-62711137 | MS.gene50173:CDS | 40.0% | |
| TGTCATTATGTTTGAGCAGC+TGG | + | chr5.4:62711335-62711354 | MS.gene50173:intron | 40.0% | |
| TTAAACCTGAAGGCAGTACT+TGG | + | chr5.4:62709855-62709874 | MS.gene50173:CDS | 40.0% | |
| TTCAATCCACTTTAGCTGTG+AGG | + | chr5.4:62710854-62710873 | MS.gene50173:CDS | 40.0% | |
| TTCATTAACCTTACTGCACG+AGG | - | chr5.4:62711288-62711307 | None:intergenic | 40.0% | |
| TTCGTTCGTTGTTCATACTC+TGG | + | chr5.4:62710959-62710978 | MS.gene50173:intron | 40.0% | |
| TTCTATTCTACGCGGGATTT+GGG | - | chr5.4:62710083-62710102 | None:intergenic | 40.0% | |
| TTTCTATTCTACGCGGGATT+TGG | - | chr5.4:62710084-62710103 | None:intergenic | 40.0% | |
| TTTCTGTTTCACCACAAAGC+AGG | + | chr5.4:62709735-62709754 | MS.gene50173:intron | 40.0% | |
| ! | AAATGCTCTTTTTGTGCCAC+TGG | + | chr5.4:62709479-62709498 | MS.gene50173:CDS | 40.0% |
| ! | AACCTAGTTAAGAGCACAGA+TGG | - | chr5.4:62710007-62710026 | None:intergenic | 40.0% |
| ! | ACTGCCTTCAGGTTTAACAT+TGG | - | chr5.4:62709852-62709871 | None:intergenic | 40.0% |
| ! | ATTATCTTTTCATGCGGAGG+AGG | + | chr5.4:62710267-62710286 | MS.gene50173:intron | 40.0% |
| ! | GCAACAACAGTGTTGAAAAC+TGG | - | chr5.4:62708714-62708733 | None:intergenic | 40.0% |
| ! | GCTAATGTTGGATTCTGGTT+GGG | + | chr5.4:62710739-62710758 | MS.gene50173:intron | 40.0% |
| ! | TATTGTATTTGGAACCCCCA+CGG | - | chr5.4:62710812-62710831 | None:intergenic | 40.0% |
| ! | TTATCTTTTCATGCGGAGGA+GGG | + | chr5.4:62710268-62710287 | MS.gene50173:intron | 40.0% |
| !! | AAACCGATTTGTAAGGTGAG+GGG | - | chr5.4:62710136-62710155 | None:intergenic | 40.0% |
| !! | CAAAACCGATTTGTAAGGTG+AGG | - | chr5.4:62710138-62710157 | None:intergenic | 40.0% |
| !! | CCTTACAAATCGGTTTTGCA+AGG | + | chr5.4:62710140-62710159 | MS.gene50173:intron | 40.0% |
| !! | CCTTGCAAAACCGATTTGTA+AGG | - | chr5.4:62710143-62710162 | None:intergenic | 40.0% |
| !! | CTTTTTGTGCCACTGGAAAA+GGG | + | chr5.4:62709486-62709505 | MS.gene50173:CDS | 40.0% |
| !! | GCACAAAAAGAGCATTTCAG+AGG | - | chr5.4:62709476-62709495 | None:intergenic | 40.0% |
| !! | GCTCTATTTCTATTCTACGC+GGG | - | chr5.4:62710090-62710109 | None:intergenic | 40.0% |
| !! | GGCTCTATTTCTATTCTACG+CGG | - | chr5.4:62710091-62710110 | None:intergenic | 40.0% |
| !! | TCTTTTTGTGCCACTGGAAA+AGG | + | chr5.4:62709485-62709504 | MS.gene50173:CDS | 40.0% |
| !! | TTTTTGTGCCACTGGAAAAG+GGG | + | chr5.4:62709487-62709506 | MS.gene50173:CDS | 40.0% |
| AAACCCGTCTACTTGTTTCG+CGG | - | chr5.4:62711211-62711230 | None:intergenic | 45.0% | |
| AAACCTGAAGGCAGTACTTG+GGG | + | chr5.4:62709857-62709876 | MS.gene50173:CDS | 45.0% | |
| AACACTGTTGTTGCAACGGA+TGG | + | chr5.4:62708720-62708739 | MS.gene50173:CDS | 45.0% | |
| AATGATGACTATCTCCACCG+TGG | + | chr5.4:62710792-62710811 | MS.gene50173:CDS | 45.0% | |
| ACTTCCGCGAAACAAGTAGA+CGG | + | chr5.4:62711204-62711223 | MS.gene50173:CDS | 45.0% | |
| AGAAGTTGCGAAGGAAATGG+CGG | - | chr5.4:62707917-62707936 | None:intergenic | 45.0% | |
| AGCAGCTGGAATCAATGACT+CGG | + | chr5.4:62711349-62711368 | MS.gene50173:intron | 45.0% | |
| AGCTCATTCCTAAATGCCTG+AGG | - | chr5.4:62708660-62708679 | None:intergenic | 45.0% | |
| AGGGAGGAACAAGAATGTGT+TGG | - | chr5.4:62711268-62711287 | None:intergenic | 45.0% | |
| ATGATGACTATCTCCACCGT+GGG | + | chr5.4:62710793-62710812 | MS.gene50173:CDS | 45.0% | |
| CAAGGTCCATATTTGGAAGC+TGG | - | chr5.4:62711753-62711772 | None:intergenic | 45.0% | |
| CAGATTGTTGTCAGAGTCTG+CGG | - | chr5.4:62711725-62711744 | None:intergenic | 45.0% | |
| CGAAACTCAGAGCCTTCTAT+TGG | - | chr5.4:62711452-62711471 | None:intergenic | 45.0% | |
| GAGCCATGAAATTGTTGAGC+AGG | + | chr5.4:62709529-62709548 | MS.gene50173:CDS | 45.0% | |
| GGAATCCCAGCTTCCAAATA+TGG | + | chr5.4:62711744-62711763 | MS.gene50173:CDS | 45.0% | |
| GGCACACCATTGCTTGAATA+AGG | + | chr5.4:62709878-62709897 | MS.gene50173:CDS | 45.0% | |
| GGCATTTAGGAATGAGCTTG+AGG | + | chr5.4:62708662-62708681 | MS.gene50173:CDS | 45.0% | |
| GTACCCCTCACCTTACAAAT+CGG | + | chr5.4:62710130-62710149 | MS.gene50173:intron | 45.0% | |
| TCATACTCTGGTGTCTGATC+TGG | + | chr5.4:62710971-62710990 | MS.gene50173:intron | 45.0% | |
| TGCAACGGATGGAACTGTTA+AGG | + | chr5.4:62708731-62708750 | MS.gene50173:CDS | 45.0% | |
| TGCACTTATGCAAGACTGCA+AGG | + | chr5.4:62711178-62711197 | MS.gene50173:CDS | 45.0% | |
| ! | ATTCTGGTTGGGCTTCTTGT+AGG | + | chr5.4:62710750-62710769 | MS.gene50173:intron | 45.0% |
| ! | CGGTTTTGCAAGGATGAGTT+AGG | + | chr5.4:62710150-62710169 | MS.gene50173:intron | 45.0% |
| ! | GTCTGATCTGGTCTGATTTG+TGG | + | chr5.4:62710983-62711002 | MS.gene50173:intron | 45.0% |
| !! | ACTTGCCCTTGATTTTGGTC+AGG | + | chr5.4:62708017-62708036 | MS.gene50173:CDS | 45.0% |
| !! | GGGGCTTTTCAAGGAATCTT+CGG | + | chr5.4:62709507-62709526 | MS.gene50173:CDS | 45.0% |
| !! | GTCTCCCTTAGTTTCTGGTT+AGG | - | chr5.4:62711125-62711144 | None:intergenic | 45.0% |
| !! | GTTTCTGGTTAGGAGCATGT+AGG | - | chr5.4:62711115-62711134 | None:intergenic | 45.0% |
| !! | TTTTGTGCCACTGGAAAAGG+GGG | + | chr5.4:62709488-62709507 | MS.gene50173:CDS | 45.0% |
| !! | ATAATAAAATGAAATATAAA+AGG | - | chr5.4:62710683-62710702 | None:intergenic | 5.0% |
| ACTAGTGTACGCCAAACCAG+AGG | + | chr5.4:62711640-62711659 | MS.gene50173:CDS | 50.0% | |
| AGCGTATCACGGAGCAATAG+CGG | - | chr5.4:62710519-62710538 | None:intergenic | 50.0% | |
| AGGAATGAGCTTGAGGAAGC+TGG | + | chr5.4:62708669-62708688 | MS.gene50173:CDS | 50.0% | |
| ATGAGCTTGAGGAAGCTGGA+TGG | + | chr5.4:62708673-62708692 | MS.gene50173:CDS | 50.0% | |
| ATGCAGCTTGTGGTCAGCTA+CGG | + | chr5.4:62711674-62711693 | MS.gene50173:CDS | 50.0% | |
| CAGCACAATTCCTCAGTCTC+AGG | + | chr5.4:62707960-62707979 | MS.gene50173:CDS | 50.0% | |
| CCAAGAAGAACCTGAGACTG+AGG | - | chr5.4:62707973-62707992 | None:intergenic | 50.0% | |
| CCTCAGTCTCAGGTTCTTCT+TGG | + | chr5.4:62707970-62707989 | MS.gene50173:CDS | 50.0% | |
| CGCAGACTCTGACAACAATC+TGG | + | chr5.4:62711723-62711742 | MS.gene50173:CDS | 50.0% | |
| CTTCCGCGAAACAAGTAGAC+GGG | + | chr5.4:62711205-62711224 | MS.gene50173:CDS | 50.0% | |
| GACAGCATGTGTCTCATCAC+AGG | + | chr5.4:62709313-62709332 | MS.gene50173:CDS | 50.0% | |
| GCGTTTGAACACCTCCTCAA+TGG | - | chr5.4:62709793-62709812 | None:intergenic | 50.0% | |
| GGCCATCTGTGCTCTTAACT+AGG | + | chr5.4:62710002-62710021 | MS.gene50173:intron | 50.0% | |
| GTGATGAGACACATGCTGTC+AGG | - | chr5.4:62709313-62709332 | None:intergenic | 50.0% | |
| TGAACAGGTCTTGGCCATTG+AGG | + | chr5.4:62709776-62709795 | MS.gene50173:intron | 50.0% | |
| TGACACGACATTGACCTGTG+TGG | + | chr5.4:62708502-62708521 | MS.gene50173:intron | 50.0% | |
| TGATGACTATCTCCACCGTG+GGG | + | chr5.4:62710794-62710813 | MS.gene50173:CDS | 50.0% | |
| TTAACCTTACTGCACGAGGG+AGG | - | chr5.4:62711284-62711303 | None:intergenic | 50.0% | |
| TTGCAGTGCCTCAGGCATTT+AGG | + | chr5.4:62708649-62708668 | MS.gene50173:intron | 50.0% | |
| ! | CTGGAAAAGGGGGCTTTTCA+AGG | + | chr5.4:62709498-62709517 | MS.gene50173:CDS | 50.0% |
| ! | GTTAGGAGCATGTAGGCTGA+TGG | - | chr5.4:62711108-62711127 | None:intergenic | 50.0% |
| ! | TGAAAAGCCCCCTTTTCCAG+TGG | - | chr5.4:62709498-62709517 | None:intergenic | 50.0% |
| !! | TCTGGTTTGGCGTACACTAG+TGG | - | chr5.4:62711641-62711660 | None:intergenic | 50.0% |
| !! | TGAGGAGGTGTTCAAACGCA+GGG | + | chr5.4:62709794-62709813 | MS.gene50173:CDS | 50.0% |
| !! | TTGAGGAGGTGTTCAAACGC+AGG | + | chr5.4:62709793-62709812 | MS.gene50173:CDS | 50.0% |
| AAGCTGGATGGAAGGTCGGA+CGG | + | chr5.4:62708685-62708704 | MS.gene50173:CDS | 55.0% | |
| ACAGGTCTTGGCCATTGAGG+AGG | + | chr5.4:62709779-62709798 | MS.gene50173:intron | 55.0% | |
| CTGAGTTTCGCCGTCCTTAC+AGG | + | chr5.4:62711462-62711481 | MS.gene50173:CDS | 55.0% | |
| CTGGACGCAAATGCAGCTTG+TGG | + | chr5.4:62711664-62711683 | MS.gene50173:CDS | 55.0% | |
| GACTGAGGAATTGTGCTGCG+AGG | - | chr5.4:62707958-62707977 | None:intergenic | 55.0% | |
| GAGGAAGCTGGATGGAAGGT+CGG | + | chr5.4:62708681-62708700 | MS.gene50173:CDS | 55.0% | |
| GATGACTATCTCCACCGTGG+GGG | + | chr5.4:62710795-62710814 | MS.gene50173:CDS | 55.0% | |
| GCTTGAGGAAGCTGGATGGA+AGG | + | chr5.4:62708677-62708696 | MS.gene50173:CDS | 55.0% | |
| TGCATTTGCGTCCAGTCCTC+TGG | - | chr5.4:62711659-62711678 | None:intergenic | 55.0% | |
| TGCTTGCATTGCAGTGCCTC+AGG | + | chr5.4:62708641-62708660 | MS.gene50173:intron | 55.0% | |
| TGTACGCCAAACCAGAGGAC+TGG | + | chr5.4:62711645-62711664 | MS.gene50173:CDS | 55.0% | |
| TGTTCCTCCCTCGTGCAGTA+AGG | + | chr5.4:62711277-62711296 | MS.gene50173:intron | 55.0% | |
| TTGCGTCCAGTCCTCTGGTT+TGG | - | chr5.4:62711654-62711673 | None:intergenic | 55.0% | |
| TTGTCAGAGTCTGCGGCCAA+AGG | - | chr5.4:62711718-62711737 | None:intergenic | 55.0% | |
| TTTCATGCGGAGGAGGGACA+TGG | + | chr5.4:62710274-62710293 | MS.gene50173:intron | 55.0% | |
| ! | TGTATTTGGAACCCCCACGG+TGG | - | chr5.4:62710809-62710828 | None:intergenic | 55.0% |
| !!! | CTGCGGCCAAAGGTGTTTTC+TGG | - | chr5.4:62711708-62711727 | None:intergenic | 55.0% |
| AGAGCACAGATGGCCGTTGC+AGG | - | chr5.4:62709997-62710016 | None:intergenic | 60.0% | |
| ! | GTGCCCCAAGTACTGCCTTC+AGG | - | chr5.4:62709863-62709882 | None:intergenic | 60.0% |
| ! | GTGCGAGGGGCATGGAATAG+TGG | - | chr5.4:62707864-62707883 | None:intergenic | 60.0% |
| AAGGACGCACCACACGTGCG+AGG | - | chr5.4:62707879-62707898 | None:intergenic | 65.0% | |
| AGGACGCACCACACGTGCGA+GGG | - | chr5.4:62707878-62707897 | None:intergenic | 65.0% | |
| GAAATGGCGGCACGTGTGCG+AGG | - | chr5.4:62707904-62707923 | None:intergenic | 65.0% | |
| TTCCATGCCCCTCGCACGTG+TGG | + | chr5.4:62707867-62707886 | MS.gene50173:CDS | 65.0% | |
| CACCACACGTGCGAGGGGCA+TGG | - | chr5.4:62707872-62707891 | None:intergenic | 70.0% | |
| GCGGCACGTGTGCGAGGTGA+AGG | - | chr5.4:62707898-62707917 | None:intergenic | 70.0% | |
| GGACGCACCACACGTGCGAG+GGG | - | chr5.4:62707877-62707896 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 62707844 | 62711786 | 62707844 | ID=MS.gene50173 |
| chr5.4 | mRNA | 62707844 | 62711786 | 62707844 | ID=MS.gene50173.t1;Parent=MS.gene50173 |
| chr5.4 | exon | 62707844 | 62708038 | 62707844 | ID=MS.gene50173.t1.exon1;Parent=MS.gene50173.t1 |
| chr5.4 | CDS | 62707844 | 62708038 | 62707844 | ID=cds.MS.gene50173.t1;Parent=MS.gene50173.t1 |
| chr5.4 | exon | 62708156 | 62708231 | 62708156 | ID=MS.gene50173.t1.exon2;Parent=MS.gene50173.t1 |
| chr5.4 | CDS | 62708156 | 62708231 | 62708156 | ID=cds.MS.gene50173.t1;Parent=MS.gene50173.t1 |
| chr5.4 | exon | 62708655 | 62708752 | 62708655 | ID=MS.gene50173.t1.exon3;Parent=MS.gene50173.t1 |
| chr5.4 | CDS | 62708655 | 62708752 | 62708655 | ID=cds.MS.gene50173.t1;Parent=MS.gene50173.t1 |
| chr5.4 | exon | 62709233 | 62709334 | 62709233 | ID=MS.gene50173.t1.exon4;Parent=MS.gene50173.t1 |
| chr5.4 | CDS | 62709233 | 62709334 | 62709233 | ID=cds.MS.gene50173.t1;Parent=MS.gene50173.t1 |
| chr5.4 | exon | 62709464 | 62709550 | 62709464 | ID=MS.gene50173.t1.exon5;Parent=MS.gene50173.t1 |
| chr5.4 | CDS | 62709464 | 62709550 | 62709464 | ID=cds.MS.gene50173.t1;Parent=MS.gene50173.t1 |
| chr5.4 | exon | 62709783 | 62709899 | 62709783 | ID=MS.gene50173.t1.exon6;Parent=MS.gene50173.t1 |
| chr5.4 | CDS | 62709783 | 62709899 | 62709783 | ID=cds.MS.gene50173.t1;Parent=MS.gene50173.t1 |
| chr5.4 | exon | 62710772 | 62710875 | 62710772 | ID=MS.gene50173.t1.exon7;Parent=MS.gene50173.t1 |
| chr5.4 | CDS | 62710772 | 62710875 | 62710772 | ID=cds.MS.gene50173.t1;Parent=MS.gene50173.t1 |
| chr5.4 | exon | 62711112 | 62711251 | 62711112 | ID=MS.gene50173.t1.exon8;Parent=MS.gene50173.t1 |
| chr5.4 | CDS | 62711112 | 62711251 | 62711112 | ID=cds.MS.gene50173.t1;Parent=MS.gene50173.t1 |
| chr5.4 | exon | 62711354 | 62711490 | 62711354 | ID=MS.gene50173.t1.exon9;Parent=MS.gene50173.t1 |
| chr5.4 | CDS | 62711354 | 62711490 | 62711354 | ID=cds.MS.gene50173.t1;Parent=MS.gene50173.t1 |
| chr5.4 | exon | 62711598 | 62711786 | 62711598 | ID=MS.gene50173.t1.exon10;Parent=MS.gene50173.t1 |
| chr5.4 | CDS | 62711598 | 62711786 | 62711598 | ID=cds.MS.gene50173.t1;Parent=MS.gene50173.t1 |
| Gene Sequence |
| Protein sequence |
