Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025041.t1 | XP_024630626.1 | 98.7 | 238 | 3 | 0 | 1 | 238 | 1 | 238 | 2.00E-129 | 472.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025041.t1 | Q3SX41 | 42.0 | 231 | 123 | 5 | 7 | 232 | 7 | 231 | 6.4e-44 | 179.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025041.t1 | A0A072TKA2 | 98.7 | 238 | 3 | 0 | 1 | 238 | 1 | 238 | 1.4e-129 | 472.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene062186 | MS.gene025041 | PPI |
| MS.gene004956 | MS.gene025041 | PPI |
| MS.gene07484 | MS.gene025041 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025041.t1 | MTR_0004s0480 | 98.256 | 344 | 6 | 0 | 1 | 344 | 1 | 344 | 0.0 | 691 |
| MS.gene025041.t1 | MTR_7g080320 | 30.899 | 178 | 107 | 5 | 1 | 172 | 1 | 168 | 3.08e-15 | 76.6 |
| MS.gene025041.t1 | MTR_7g080320 | 29.078 | 141 | 93 | 3 | 135 | 269 | 209 | 348 | 1.18e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025041.t1 | AT5G51410 | 79.259 | 270 | 55 | 1 | 1 | 269 | 1 | 270 | 9.15e-155 | 437 |
| MS.gene025041.t1 | AT5G51410 | 79.259 | 270 | 55 | 1 | 1 | 269 | 1 | 270 | 9.15e-155 | 437 |
| MS.gene025041.t1 | AT5G51410 | 79.259 | 270 | 55 | 1 | 1 | 269 | 1 | 270 | 9.15e-155 | 437 |
| MS.gene025041.t1 | AT5G51410 | 79.259 | 270 | 55 | 1 | 1 | 269 | 1 | 270 | 9.15e-155 | 437 |
| MS.gene025041.t1 | AT5G51410 | 79.259 | 270 | 55 | 1 | 1 | 269 | 1 | 270 | 9.15e-155 | 437 |
| MS.gene025041.t1 | AT3G03340 | 30.526 | 190 | 115 | 5 | 1 | 186 | 1 | 177 | 7.98e-17 | 81.3 |
| MS.gene025041.t1 | AT3G03340 | 31.313 | 198 | 97 | 7 | 116 | 300 | 198 | 369 | 5.71e-12 | 66.6 |
| MS.gene025041.t1 | AT3G03340 | 30.526 | 190 | 115 | 5 | 1 | 186 | 79 | 255 | 1.92e-16 | 80.5 |
| MS.gene025041.t1 | AT3G03340 | 31.313 | 198 | 97 | 7 | 116 | 300 | 276 | 447 | 5.90e-12 | 67.0 |
| MS.gene025041.t1 | AT5G17440 | 30.159 | 189 | 115 | 5 | 1 | 185 | 1 | 176 | 3.44e-16 | 79.3 |
| MS.gene025041.t1 | AT5G17440 | 33.846 | 130 | 71 | 3 | 117 | 241 | 199 | 318 | 3.00e-13 | 70.5 |
| MS.gene025041.t1 | AT5G17440 | 35.345 | 116 | 65 | 3 | 1 | 114 | 1 | 108 | 6.46e-16 | 77.4 |
| MS.gene025041.t1 | AT3G03340 | 30.526 | 190 | 115 | 5 | 1 | 186 | 1 | 177 | 7.76e-16 | 77.8 |
| MS.gene025041.t1 | AT3G03340 | 35.537 | 121 | 61 | 4 | 116 | 230 | 198 | 307 | 7.54e-13 | 68.9 |
Find 77 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTGTAGTTATGCTTAAT+AGG | 0.142913 | 4.3:-57636276 | None:intergenic |
| GCAAGATCGGCTTCAAATTT+AGG | 0.292888 | 4.3:-57635176 | None:intergenic |
| TTCTGTAGTTATGCTTAATA+GGG | 0.331026 | 4.3:-57636275 | None:intergenic |
| GGAAGTTTGTGGTTTCTATA+TGG | 0.332001 | 4.3:+57633293 | MS.gene025041:CDS |
| GGAGAAAATAAAGAACCTTC+TGG | 0.354149 | 4.3:+57635432 | MS.gene025041:CDS |
| GTTGAATCTCTTGGTGAAGC+TGG | 0.375956 | 4.3:+57635460 | MS.gene025041:CDS |
| GCACGTATGCATCATGCCTT+GGG | 0.388877 | 4.3:-57635154 | None:intergenic |
| GGGAATCGAGATCGAGGAAG+GGG | 0.409552 | 4.3:+57636180 | MS.gene025041:CDS |
| GACGGGGTGATTCAAGTGAT+AGG | 0.410658 | 4.3:+57636064 | MS.gene025041:CDS |
| CTCGACGAACTCATGGGTTC+AGG | 0.418323 | 4.3:+57633135 | MS.gene025041:CDS |
| ATCTGAACAGTTGTCTGTCC+TGG | 0.430404 | 4.3:+57635408 | MS.gene025041:CDS |
| CTGGAACAAGTTGAATCTCT+TGG | 0.435647 | 4.3:+57635451 | MS.gene025041:CDS |
| TGGGACGATAAGGAAGTTTG+TGG | 0.435949 | 4.3:+57633282 | MS.gene025041:CDS |
| GGCACGTATGCATCATGCCT+TGG | 0.438040 | 4.3:-57635155 | None:intergenic |
| AGCTCTCCTCGACGAACTCA+TGG | 0.445844 | 4.3:+57633128 | MS.gene025041:CDS |
| CTCACAAAACTGAGCAAGAT+CGG | 0.453847 | 4.3:-57635189 | None:intergenic |
| GTCAATACGCGCAGTGATCT+CGG | 0.466186 | 4.3:+57633342 | MS.gene025041:CDS |
| AGAAGTGAGTTGGGACGATA+AGG | 0.483654 | 4.3:+57633272 | MS.gene025041:CDS |
| ACTCGGATCGTGAAAGATCT+CGG | 0.487797 | 4.3:+57636142 | MS.gene025041:CDS |
| GCAGAGACAGGTACCACAAT+CGG | 0.490454 | 4.3:+57636238 | MS.gene025041:CDS |
| ATAATCACAGGTGATGGACT+TGG | 0.491646 | 4.3:+57635306 | MS.gene025041:intron |
| TCACCCCGTCTCTTTCTCTC+AGG | 0.493705 | 4.3:-57636051 | None:intergenic |
| GGATCCTGAGAGAAAGAGAC+GGG | 0.496110 | 4.3:+57636047 | MS.gene025041:CDS |
| AGAAGAGCGAAGAAAACAAA+AGG | 0.502735 | 4.3:+57636020 | MS.gene025041:CDS |
| GCTGTCAGTGGTGGCGGTGG+TGG | 0.503620 | 4.3:-57635379 | None:intergenic |
| GCGAAGAAAACAAAAGGAGC+AGG | 0.514193 | 4.3:+57636026 | MS.gene025041:CDS |
| CTCGGATCGTGAAAGATCTC+GGG | 0.514400 | 4.3:+57636143 | MS.gene025041:CDS |
| ATCGAGATAGGCAGCGTGAT+AGG | 0.514417 | 4.3:+57636106 | MS.gene025041:CDS |
| ATCTCTTGGTGAAGCTGGGA+AGG | 0.515528 | 4.3:+57635465 | MS.gene025041:CDS |
| GGGTTACAAAGAAGTGAGTT+GGG | 0.517957 | 4.3:+57633263 | MS.gene025041:CDS |
| TTGAATCTCTTGGTGAAGCT+GGG | 0.520092 | 4.3:+57635461 | MS.gene025041:CDS |
| GAGGGAATCGAGATCGAGGA+AGG | 0.522555 | 4.3:+57636178 | MS.gene025041:CDS |
| GGAAAGCAGCATGTTGGCTA+TGG | 0.524490 | 4.3:+57635827 | MS.gene025041:CDS |
| GGGGTTACAAAGAAGTGAGT+TGG | 0.527552 | 4.3:+57633262 | MS.gene025041:CDS |
| GAGATTCAACTTGTTCCAGA+AGG | 0.534767 | 4.3:-57635447 | None:intergenic |
| AGCTGAAGCTCTTATGAGAA+AGG | 0.541211 | 4.3:+57635495 | MS.gene025041:CDS |
| TCTCGGGAATATGAAGGTAG+AGG | 0.541632 | 4.3:+57636159 | MS.gene025041:CDS |
| CTTGACTGAGGAAGAAAGAA+GGG | 0.550258 | 4.3:+57633242 | MS.gene025041:CDS |
| ACTTGACTGAGGAAGAAAGA+AGG | 0.553452 | 4.3:+57633241 | MS.gene025041:CDS |
| GATTGCTAAGGAGAAGGCTA+AGG | 0.554953 | 4.3:+57635966 | MS.gene025041:intron |
| TCAGCTGTCAGTGGTGGCGG+TGG | 0.557872 | 4.3:-57635382 | None:intergenic |
| GGAAGAAGAAAGATTGACTC+GGG | 0.558620 | 4.3:+57635987 | MS.gene025041:CDS |
| AGAACTCAGTCTCATGTCGC+AGG | 0.559633 | 4.3:+57635806 | MS.gene025041:CDS |
| GAAAGATCTCGGGAATATGA+AGG | 0.563627 | 4.3:+57636153 | MS.gene025041:CDS |
| AGGGAATCGAGATCGAGGAA+GGG | 0.568250 | 4.3:+57636179 | MS.gene025041:CDS |
| GCAGCATGTTGGCTATGGTA+TGG | 0.570060 | 4.3:+57635832 | MS.gene025041:CDS |
| ACGGGGTGATTCAAGTGATA+GGG | 0.570473 | 4.3:+57636065 | MS.gene025041:CDS |
| CTCGGGAATATGAAGGTAGA+GGG | 0.575879 | 4.3:+57636160 | MS.gene025041:CDS |
| CTATTAAGCATAACTACAGA+AGG | 0.587485 | 4.3:+57636277 | MS.gene025041:CDS |
| GCTCTCCTCGACGAACTCAT+GGG | 0.594522 | 4.3:+57633129 | MS.gene025041:CDS |
| AACGTGATCTGCTCCGATTG+TGG | 0.597216 | 4.3:-57636251 | None:intergenic |
| TGACTTCATAAATGAATACA+AGG | 0.598021 | 4.3:+57635859 | MS.gene025041:CDS |
| AGGATCCTGAGAGAAAGAGA+CGG | 0.600463 | 4.3:+57636046 | MS.gene025041:CDS |
| AGGAAGAAGAAAGATTGACT+CGG | 0.603218 | 4.3:+57635986 | MS.gene025041:CDS |
| GTCGCAGGAAAGCAGCATGT+TGG | 0.607800 | 4.3:+57635821 | MS.gene025041:CDS |
| AATGCTTCAGGAGAAGAAGA+TGG | 0.611727 | 4.3:+57635733 | MS.gene025041:CDS |
| ATCGTGATAAAGATCGAGAT+AGG | 0.617765 | 4.3:+57636094 | MS.gene025041:CDS |
| TCTGTAGTTATGCTTAATAG+GGG | 0.619225 | 4.3:-57636274 | None:intergenic |
| GGTATGTGGTTCGTTTCTCG+TGG | 0.623915 | 4.3:+57635766 | MS.gene025041:CDS |
| ATGGCACTCTGTGAGGTATG+TGG | 0.625178 | 4.3:+57635752 | MS.gene025041:CDS |
| GGAATCGAGATCGAGGAAGG+GGG | 0.629753 | 4.3:+57636181 | MS.gene025041:CDS |
| GGTAGAGGGAATCGAGATCG+AGG | 0.631592 | 4.3:+57636174 | MS.gene025041:CDS |
| GGAGACACTTAATACTGAGA+AGG | 0.634366 | 4.3:+57635676 | MS.gene025041:CDS |
| TGAACAGTTGTCTGTCCTGG+AGG | 0.636803 | 4.3:+57635411 | MS.gene025041:CDS |
| ACGAGAACGTCTTAATCAAG+AGG | 0.649224 | 4.3:+57635348 | MS.gene025041:CDS |
| ATGGTTTCTAGGTTGAGGAA+CGG | 0.651338 | 4.3:+57636204 | MS.gene025041:CDS |
| GAAGAAGATGGCACTCTGTG+AGG | 0.661944 | 4.3:+57635745 | MS.gene025041:CDS |
| AGAACGTCTTAATCAAGAGG+TGG | 0.666877 | 4.3:+57635351 | MS.gene025041:CDS |
| GTATTGACGAAGAGATCGTG+AGG | 0.671064 | 4.3:-57633327 | None:intergenic |
| TTCAGCTCGAAACTTGACTG+AGG | 0.672653 | 4.3:+57633230 | MS.gene025041:intron |
| TTGACTGAGGAAGAAAGAAG+GGG | 0.676867 | 4.3:+57633243 | MS.gene025041:CDS |
| CACGTATGCATCATGCCTTG+GGG | 0.690040 | 4.3:-57635153 | None:intergenic |
| TAGGTACAGAGATAGAGACT+CGG | 0.703615 | 4.3:+57636125 | MS.gene025041:CDS |
| TATTGACGAAGAGATCGTGA+GGG | 0.730825 | 4.3:-57633326 | None:intergenic |
| CTGAACCCATGAGTTCGTCG+AGG | 0.733418 | 4.3:-57633134 | None:intergenic |
| GATCCTGAGAGAAAGAGACG+GGG | 0.755999 | 4.3:+57636048 | MS.gene025041:CDS |
| TTGGATAGAAGAGTAAAACG+TGG | 0.775215 | 4.3:+57635325 | MS.gene025041:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTATATTAAATATA+TGG | + | chr4.3:57634084-57634103 | MS.gene025041:intron | 0.0% |
| !! | AATTATTTATAAGTATGTTA+AGG | + | chr4.3:57633499-57633518 | MS.gene025041:intron | 10.0% |
| !! | ATAAATGTATAGATTAATTT+AGG | - | chr4.3:57635895-57635914 | None:intergenic | 10.0% |
| !! | ATTGACATTCAAATTTAATA+CGG | - | chr4.3:57634780-57634799 | None:intergenic | 15.0% |
| !! | GTTCAAAAAATTATTAATCT+TGG | + | chr4.3:57634139-57634158 | MS.gene025041:intron | 15.0% |
| !! | AAGGGTTAACAAAAAAAATT+AGG | - | chr4.3:57634742-57634761 | None:intergenic | 20.0% |
| !! | AGGGTTAACAAAAAAAATTA+GGG | - | chr4.3:57634741-57634760 | None:intergenic | 20.0% |
| !! | GAAATCAAAAAACAATTTAC+TGG | - | chr4.3:57635064-57635083 | None:intergenic | 20.0% |
| !! | TTGACATTCAAATTTAATAC+GGG | - | chr4.3:57634779-57634798 | None:intergenic | 20.0% |
| !!! | AAAGGATAAGAAACTTTTAA+AGG | - | chr4.3:57634878-57634897 | None:intergenic | 20.0% |
| !!! | AAATGATTTTTTTGACGAAA+AGG | + | chr4.3:57633385-57633404 | MS.gene025041:intron | 20.0% |
| !!! | AAGGATAAGAAACTTTTAAA+GGG | - | chr4.3:57634877-57634896 | None:intergenic | 20.0% |
| !!! | ATATTTTACTTTGTCATGTA+TGG | + | chr4.3:57634900-57634919 | MS.gene025041:intron | 20.0% |
| !!! | ATTAACACTTTTTCATTTTG+AGG | - | chr4.3:57635716-57635735 | None:intergenic | 20.0% |
| !!! | GCATTTTATGCTTTATTTAT+CGG | - | chr4.3:57635042-57635061 | None:intergenic | 20.0% |
| !!! | TATGAATATACAATTTTCGT+TGG | + | chr4.3:57633720-57633739 | MS.gene025041:intron | 20.0% |
| ! | AACATATGCCTATGATAATT+TGG | + | chr4.3:57634931-57634950 | MS.gene025041:intron | 25.0% |
| ! | AATAGTATACACAAGGAAAA+GGG | - | chr4.3:57635540-57635559 | None:intergenic | 25.0% |
| ! | AATCATCAATAGTATACACA+AGG | - | chr4.3:57635547-57635566 | None:intergenic | 25.0% |
| ! | TGACAAAGTAAAATATGCAA+AGG | - | chr4.3:57634896-57634915 | None:intergenic | 25.0% |
| ! | TGACTTCATAAATGAATACA+AGG | + | chr4.3:57635859-57635878 | MS.gene025041:CDS | 25.0% |
| ! | TTCTGTAGTTATGCTTAATA+GGG | - | chr4.3:57636278-57636297 | None:intergenic | 25.0% |
| ! | TTTCAAATTATTAGCTGTGT+CGG | - | chr4.3:57633600-57633619 | None:intergenic | 25.0% |
| !! | ATGAAATAGTTTGAGATTTC+TGG | + | chr4.3:57634486-57634505 | MS.gene025041:intron | 25.0% |
| !! | TTTTTAATGTAGAATGAGGA+TGG | - | chr4.3:57635240-57635259 | None:intergenic | 25.0% |
| !!! | ACTGTTTTTAATGTAGAATG+AGG | - | chr4.3:57635244-57635263 | None:intergenic | 25.0% |
| !!! | ATTAGTTTTCTGACATAATC+AGG | - | chr4.3:57634554-57634573 | None:intergenic | 25.0% |
| !!! | TGCAATGTTTTTGAAAATCA+CGG | - | chr4.3:57633839-57633858 | None:intergenic | 25.0% |
| !!! | TTTGACTTTTTGTTCGTATT+TGG | + | chr4.3:57634014-57634033 | MS.gene025041:intron | 25.0% |
| !!! | TTTTTGTTCGTATTTGGAAT+AGG | + | chr4.3:57634020-57634039 | MS.gene025041:intron | 25.0% |
| AAACTCAGTTACACATTTAC+GGG | - | chr4.3:57635086-57635105 | None:intergenic | 30.0% | |
| AACTTATGAACTATGAAGCA+TGG | + | chr4.3:57633539-57633558 | MS.gene025041:intron | 30.0% | |
| AAGTTCATTCTGTTTCATGT+AGG | - | chr4.3:57634255-57634274 | None:intergenic | 30.0% | |
| AATTTCATGACTCGTTCAAT+TGG | + | chr4.3:57634797-57634816 | MS.gene025041:intron | 30.0% | |
| ACAAGTTCATTTCTACGATT+GGG | - | chr4.3:57635587-57635606 | None:intergenic | 30.0% | |
| ACGAACAAAAAGTCAAAGAT+TGG | - | chr4.3:57634011-57634030 | None:intergenic | 30.0% | |
| AGATGTTACAAATGAGAATG+AGG | + | chr4.3:57633408-57633427 | MS.gene025041:intron | 30.0% | |
| ATTTCATGACTCGTTCAATT+GGG | + | chr4.3:57634798-57634817 | MS.gene025041:intron | 30.0% | |
| CAATAGTATACACAAGGAAA+AGG | - | chr4.3:57635541-57635560 | None:intergenic | 30.0% | |
| CTAAAATAAGCCAATCCAAA+CGG | - | chr4.3:57633437-57633456 | None:intergenic | 30.0% | |
| CTATTAAGCATAACTACAGA+AGG | + | chr4.3:57636277-57636296 | MS.gene025041:CDS | 30.0% | |
| CTTATTAACTGTGATAGCTT+TGG | + | chr4.3:57634338-57634357 | MS.gene025041:intron | 30.0% | |
| CTTCTGTAGTTATGCTTAAT+AGG | - | chr4.3:57636279-57636298 | None:intergenic | 30.0% | |
| GAAACTCAGTTACACATTTA+CGG | - | chr4.3:57635087-57635106 | None:intergenic | 30.0% | |
| TAATACAGTAATTGACACCT+AGG | - | chr4.3:57634224-57634243 | None:intergenic | 30.0% | |
| TACGCATACCAAATTATCAT+AGG | - | chr4.3:57634942-57634961 | None:intergenic | 30.0% | |
| TATTCATAAGCTATGAAGCA+CGG | - | chr4.3:57633708-57633727 | None:intergenic | 30.0% | |
| TCTGTAGTTATGCTTAATAG+GGG | - | chr4.3:57636277-57636296 | None:intergenic | 30.0% | |
| TGAATTGACACAAAATTCCA+TGG | - | chr4.3:57633882-57633901 | None:intergenic | 30.0% | |
| TTCATAAGCTCAATCTAAAC+AGG | + | chr4.3:57633792-57633811 | MS.gene025041:intron | 30.0% | |
| ! | CTTTATTTATCGGCATATCA+TGG | - | chr4.3:57635032-57635051 | None:intergenic | 30.0% |
| ! | TTCTTCTTTTCAGATTGCTA+AGG | + | chr4.3:57635954-57635973 | MS.gene025041:intron | 30.0% |
| !! | CTTACTTTTCTTTCAACTTC+GGG | - | chr4.3:57634430-57634449 | None:intergenic | 30.0% |
| !! | CTTTTAAAGGGAAGCAATAT+TGG | - | chr4.3:57634865-57634884 | None:intergenic | 30.0% |
| !! | GCAATGTTTTTGAAAATCAC+GGG | - | chr4.3:57633838-57633857 | None:intergenic | 30.0% |
| !! | GCTTACTTTTCTTTCAACTT+CGG | - | chr4.3:57634431-57634450 | None:intergenic | 30.0% |
| !! | TAAGATCTTTAGAGTTGAAG+AGG | - | chr4.3:57634322-57634341 | None:intergenic | 30.0% |
| !! | TGAAAAAGTGTTAATGCTTC+AGG | + | chr4.3:57635721-57635740 | MS.gene025041:CDS | 30.0% |
| !! | TGTTTTCTGGTAATAATCAC+AGG | + | chr4.3:57635294-57635313 | MS.gene025041:intron | 30.0% |
| !!! | CTCGTGAATTTATTTTTTCG+CGG | + | chr4.3:57635635-57635654 | MS.gene025041:intron | 30.0% |
| !!! | TCGTGAATTTATTTTTTCGC+GGG | + | chr4.3:57635636-57635655 | MS.gene025041:intron | 30.0% |
| AAAGGGAAGCAATATTGGTA+CGG | - | chr4.3:57634860-57634879 | None:intergenic | 35.0% | |
| AGAAGAGCGAAGAAAACAAA+AGG | + | chr4.3:57636020-57636039 | MS.gene025041:CDS | 35.0% | |
| AGGAAGAAGAAAGATTGACT+CGG | + | chr4.3:57635986-57636005 | MS.gene025041:CDS | 35.0% | |
| ATCGTGATAAAGATCGAGAT+AGG | + | chr4.3:57636094-57636113 | MS.gene025041:CDS | 35.0% | |
| CAAGTTCATTTCTACGATTG+GGG | - | chr4.3:57635586-57635605 | None:intergenic | 35.0% | |
| CACAAGTTCATTTCTACGAT+TGG | - | chr4.3:57635588-57635607 | None:intergenic | 35.0% | |
| GGAAGTTTGTGGTTTCTATA+TGG | + | chr4.3:57633293-57633312 | MS.gene025041:CDS | 35.0% | |
| GGAGAAAATAAAGAACCTTC+TGG | + | chr4.3:57635432-57635451 | MS.gene025041:CDS | 35.0% | |
| TTGGATAGAAGAGTAAAACG+TGG | + | chr4.3:57635325-57635344 | MS.gene025041:CDS | 35.0% | |
| TTTCATGACTCGTTCAATTG+GGG | + | chr4.3:57634799-57634818 | MS.gene025041:intron | 35.0% | |
| ! | AACTTCGGGTCATGTATTTT+CGG | - | chr4.3:57634416-57634435 | None:intergenic | 35.0% |
| ! | CTGATGTTCTTCATGTTTTC+TGG | + | chr4.3:57635281-57635300 | MS.gene025041:intron | 35.0% |
| ! | TTTTCAGATTGCTAAGGAGA+AGG | + | chr4.3:57635960-57635979 | MS.gene025041:intron | 35.0% |
| !! | CAGTTTTGTGAGAAATTGGT+AGG | + | chr4.3:57635200-57635219 | MS.gene025041:intron | 35.0% |
| !! | TGCTCAGTTTTGTGAGAAAT+TGG | + | chr4.3:57635196-57635215 | MS.gene025041:CDS | 35.0% |
| !! | TTAACTGTGATAGCTTTGGT+TGG | + | chr4.3:57634342-57634361 | MS.gene025041:intron | 35.0% |
| AATGCTTCAGGAGAAGAAGA+TGG | + | chr4.3:57635733-57635752 | MS.gene025041:CDS | 40.0% | |
| ACGAGAACGTCTTAATCAAG+AGG | + | chr4.3:57635348-57635367 | MS.gene025041:CDS | 40.0% | |
| ACTTGACTGAGGAAGAAAGA+AGG | + | chr4.3:57633241-57633260 | MS.gene025041:CDS | 40.0% | |
| AGAACGTCTTAATCAAGAGG+TGG | + | chr4.3:57635351-57635370 | MS.gene025041:CDS | 40.0% | |
| AGCTGAAGCTCTTATGAGAA+AGG | + | chr4.3:57635495-57635514 | MS.gene025041:CDS | 40.0% | |
| AGGTTGAGGAACGGAAAAAA+TGG | + | chr4.3:57636213-57636232 | MS.gene025041:CDS | 40.0% | |
| ATTAAGCGATCTTAGTGCTG+TGG | + | chr4.3:57634690-57634709 | MS.gene025041:intron | 40.0% | |
| CTCACAAAACTGAGCAAGAT+CGG | - | chr4.3:57635192-57635211 | None:intergenic | 40.0% | |
| CTGGTAATAATCACAGGTGA+TGG | + | chr4.3:57635300-57635319 | MS.gene025041:intron | 40.0% | |
| CTTGACTGAGGAAGAAAGAA+GGG | + | chr4.3:57633242-57633261 | MS.gene025041:CDS | 40.0% | |
| GAAAAAATGGAAGCAGAGAC+AGG | + | chr4.3:57636226-57636245 | MS.gene025041:CDS | 40.0% | |
| GAAAGATCTCGGGAATATGA+AGG | + | chr4.3:57636153-57636172 | MS.gene025041:CDS | 40.0% | |
| GAACATCAGCATACAAGCAA+AGG | - | chr4.3:57635270-57635289 | None:intergenic | 40.0% | |
| GGAGACACTTAATACTGAGA+AGG | + | chr4.3:57635676-57635695 | MS.gene025041:CDS | 40.0% | |
| GGGTTACAAAGAAGTGAGTT+GGG | + | chr4.3:57633263-57633282 | MS.gene025041:CDS | 40.0% | |
| GTAGTGTGATATTGCATCCA+TGG | + | chr4.3:57633862-57633881 | MS.gene025041:intron | 40.0% | |
| TAACGTGTTTAAACCGATGC+AGG | + | chr4.3:57634383-57634402 | MS.gene025041:intron | 40.0% | |
| TACAAGTGTTAGTGTCGTGT+CGG | + | chr4.3:57633642-57633661 | MS.gene025041:intron | 40.0% | |
| TAGGTACAGAGATAGAGACT+CGG | + | chr4.3:57636125-57636144 | MS.gene025041:CDS | 40.0% | |
| TATACACAAGGAAAAGGGTG+TGG | - | chr4.3:57635535-57635554 | None:intergenic | 40.0% | |
| TATTGACGAAGAGATCGTGA+GGG | - | chr4.3:57633329-57633348 | None:intergenic | 40.0% | |
| TTGAATCTCTTGGTGAAGCT+GGG | + | chr4.3:57635461-57635480 | MS.gene025041:CDS | 40.0% | |
| TTGACTGAGGAAGAAAGAAG+GGG | + | chr4.3:57633243-57633262 | MS.gene025041:CDS | 40.0% | |
| ! | ACTTCGGGTCATGTATTTTC+GGG | - | chr4.3:57634415-57634434 | None:intergenic | 40.0% |
| ! | ATGGTTTCTAGGTTGAGGAA+CGG | + | chr4.3:57636204-57636223 | MS.gene025041:CDS | 40.0% |
| ! | CAAAAAGTCAAAGATTGGCC+AGG | - | chr4.3:57634006-57634025 | None:intergenic | 40.0% |
| ! | CGGGATATTTTTCTTTCAGG+TGG | + | chr4.3:57635655-57635674 | MS.gene025041:intron | 40.0% |
| ! | CTGGAACAAGTTGAATCTCT+TGG | + | chr4.3:57635451-57635470 | MS.gene025041:CDS | 40.0% |
| ! | GAGATTCAACTTGTTCCAGA+AGG | - | chr4.3:57635450-57635469 | None:intergenic | 40.0% |
| ! | GCAAGATCGGCTTCAAATTT+AGG | - | chr4.3:57635179-57635198 | None:intergenic | 40.0% |
| ! | GGAAGAAGAAAGATTGACTC+GGG | + | chr4.3:57635987-57636006 | MS.gene025041:CDS | 40.0% |
| ! | TCGCGGGATATTTTTCTTTC+AGG | + | chr4.3:57635652-57635671 | MS.gene025041:intron | 40.0% |
| ! | TTGGTACGGTGCACTTTTAA+TGG | - | chr4.3:57634846-57634865 | None:intergenic | 40.0% |
| !! | AAGATTGACTCGGGAAAAAG+AGG | + | chr4.3:57635996-57636015 | MS.gene025041:CDS | 40.0% |
| !! | ATAATCACAGGTGATGGACT+TGG | + | chr4.3:57635306-57635325 | MS.gene025041:intron | 40.0% |
| !! | TCAGATTTTTCAGCTGTCAG+TGG | - | chr4.3:57635394-57635413 | None:intergenic | 40.0% |
| !!! | GGTTCTTTATTTTCTCCTCC+AGG | - | chr4.3:57635429-57635448 | None:intergenic | 40.0% |
| !!! | TCAGTTTTGAGAATTCCCCA+AGG | + | chr4.3:57635138-57635157 | MS.gene025041:intron | 40.0% |
| AATGAGGAGTCCGTTTGGAT+TGG | + | chr4.3:57633424-57633443 | MS.gene025041:intron | 45.0% | |
| ACAATAGAGCAACCATGTGC+GGG | - | chr4.3:57634982-57635001 | None:intergenic | 45.0% | |
| ACGGGGTGATTCAAGTGATA+GGG | + | chr4.3:57636065-57636084 | MS.gene025041:CDS | 45.0% | |
| ACGGGTAGCATACACTCAAA+AGG | - | chr4.3:57634761-57634780 | None:intergenic | 45.0% | |
| ACTCGGATCGTGAAAGATCT+CGG | + | chr4.3:57636142-57636161 | MS.gene025041:CDS | 45.0% | |
| AGGATCCTGAGAGAAAGAGA+CGG | + | chr4.3:57636046-57636065 | MS.gene025041:CDS | 45.0% | |
| ATCTGAACAGTTGTCTGTCC+TGG | + | chr4.3:57635408-57635427 | MS.gene025041:CDS | 45.0% | |
| ATGAGAATGAGGAGTCCGTT+TGG | + | chr4.3:57633419-57633438 | MS.gene025041:intron | 45.0% | |
| CACAATAGAGCAACCATGTG+CGG | - | chr4.3:57634983-57635002 | None:intergenic | 45.0% | |
| CGGGTAGCATACACTCAAAA+GGG | - | chr4.3:57634760-57634779 | None:intergenic | 45.0% | |
| CTCGGGAATATGAAGGTAGA+GGG | + | chr4.3:57636160-57636179 | MS.gene025041:CDS | 45.0% | |
| GAATGAGGATGGCAACAGAT+AGG | - | chr4.3:57635229-57635248 | None:intergenic | 45.0% | |
| GATTAGGTGTGTCCTGTAGT+CGG | - | chr4.3:57633675-57633694 | None:intergenic | 45.0% | |
| GATTGCTAAGGAGAAGGCTA+AGG | + | chr4.3:57635966-57635985 | MS.gene025041:intron | 45.0% | |
| GCGAAGAAAACAAAAGGAGC+AGG | + | chr4.3:57636026-57636045 | MS.gene025041:CDS | 45.0% | |
| GGGGTTACAAAGAAGTGAGT+TGG | + | chr4.3:57633262-57633281 | MS.gene025041:CDS | 45.0% | |
| GTTGAATCTCTTGGTGAAGC+TGG | + | chr4.3:57635460-57635479 | MS.gene025041:CDS | 45.0% | |
| TACTGTGTCAGTGTCAACCT+AGG | + | chr4.3:57633906-57633925 | MS.gene025041:intron | 45.0% | |
| TATGAAGCACGGATACTCCT+CGG | - | chr4.3:57633697-57633716 | None:intergenic | 45.0% | |
| TCTCGGGAATATGAAGGTAG+AGG | + | chr4.3:57636159-57636178 | MS.gene025041:CDS | 45.0% | |
| TGAAGCATGGATACAGACAC+TGG | + | chr4.3:57633552-57633571 | MS.gene025041:intron | 45.0% | |
| TGGGACGATAAGGAAGTTTG+TGG | + | chr4.3:57633282-57633301 | MS.gene025041:CDS | 45.0% | |
| TTCAGCTCGAAACTTGACTG+AGG | + | chr4.3:57633230-57633249 | MS.gene025041:intron | 45.0% | |
| ! | AGAAGTGAGTTGGGACGATA+AGG | + | chr4.3:57633272-57633291 | MS.gene025041:CDS | 45.0% |
| ! | CGATCGATTTATCGAGTGAG+TGG | - | chr4.3:57633189-57633208 | None:intergenic | 45.0% |
| ! | GGGCTGCAGTTGATTTCAAA+GGG | - | chr4.3:57633818-57633837 | None:intergenic | 45.0% |
| ! | GTATTGACGAAGAGATCGTG+AGG | - | chr4.3:57633330-57633349 | None:intergenic | 45.0% |
| !! | AATTGTTGACTCAGCCACTG+AGG | + | chr4.3:57634611-57634630 | MS.gene025041:intron | 45.0% |
| !! | GATTTTTCAGCTGTCAGTGG+TGG | - | chr4.3:57635391-57635410 | None:intergenic | 45.0% |
| AACGTGATCTGCTCCGATTG+TGG | - | chr4.3:57636254-57636273 | None:intergenic | 50.0% | |
| ACGCACATGTGAAACCTCAG+TGG | - | chr4.3:57634628-57634647 | None:intergenic | 50.0% | |
| AGAACTCAGTCTCATGTCGC+AGG | + | chr4.3:57635806-57635825 | MS.gene025041:CDS | 50.0% | |
| AGGGAATCGAGATCGAGGAA+GGG | + | chr4.3:57636179-57636198 | MS.gene025041:CDS | 50.0% | |
| AGGTAGTCAATCCCGGATAG+CGG | - | chr4.3:57634204-57634223 | None:intergenic | 50.0% | |
| ATCGAGATAGGCAGCGTGAT+AGG | + | chr4.3:57636106-57636125 | MS.gene025041:CDS | 50.0% | |
| ATCTCTTGGTGAAGCTGGGA+AGG | + | chr4.3:57635465-57635484 | MS.gene025041:CDS | 50.0% | |
| ATGGCACTCTGTGAGGTATG+TGG | + | chr4.3:57635752-57635771 | MS.gene025041:CDS | 50.0% | |
| CACGTATGCATCATGCCTTG+GGG | - | chr4.3:57635156-57635175 | None:intergenic | 50.0% | |
| CCTGGCAAATCCCAAAGTAG+CGG | + | chr4.3:57633937-57633956 | MS.gene025041:intron | 50.0% | |
| CTATCCGGGATTGACTACCT+AGG | + | chr4.3:57634204-57634223 | MS.gene025041:intron | 50.0% | |
| CTCGGATCGTGAAAGATCTC+GGG | + | chr4.3:57636143-57636162 | MS.gene025041:CDS | 50.0% | |
| GAAGAAGATGGCACTCTGTG+AGG | + | chr4.3:57635745-57635764 | MS.gene025041:CDS | 50.0% | |
| GACACCTAGGTAGTCAATCC+CGG | - | chr4.3:57634211-57634230 | None:intergenic | 50.0% | |
| GACGGGGTGATTCAAGTGAT+AGG | + | chr4.3:57636064-57636083 | MS.gene025041:CDS | 50.0% | |
| GACTCGTTCAATTGGGGCTA+TGG | + | chr4.3:57634805-57634824 | MS.gene025041:intron | 50.0% | |
| GATCCTGAGAGAAAGAGACG+GGG | + | chr4.3:57636048-57636067 | MS.gene025041:CDS | 50.0% | |
| GCACGTATGCATCATGCCTT+GGG | - | chr4.3:57635157-57635176 | None:intergenic | 50.0% | |
| GCAGAGACAGGTACCACAAT+CGG | + | chr4.3:57636238-57636257 | MS.gene025041:CDS | 50.0% | |
| GGATCCTGAGAGAAAGAGAC+GGG | + | chr4.3:57636047-57636066 | MS.gene025041:CDS | 50.0% | |
| GGTATGTGGTTCGTTTCTCG+TGG | + | chr4.3:57635766-57635785 | MS.gene025041:CDS | 50.0% | |
| GTCAATACGCGCAGTGATCT+CGG | + | chr4.3:57633342-57633361 | MS.gene025041:CDS | 50.0% | |
| TACAGGACACACCTAATCCG+AGG | + | chr4.3:57633677-57633696 | MS.gene025041:intron | 50.0% | |
| TCAACCTAGGCAGTCAATCC+TGG | + | chr4.3:57633919-57633938 | MS.gene025041:intron | 50.0% | |
| TGAACAGTTGTCTGTCCTGG+AGG | + | chr4.3:57635411-57635430 | MS.gene025041:CDS | 50.0% | |
| TGAGGATGGCAACAGATAGG+TGG | - | chr4.3:57635226-57635245 | None:intergenic | 50.0% | |
| TTTGCCAGGATTGACTGCCT+AGG | - | chr4.3:57633926-57633945 | None:intergenic | 50.0% | |
| ! | CGGGCTGCAGTTGATTTCAA+AGG | - | chr4.3:57633819-57633838 | None:intergenic | 50.0% |
| ! | GCAGCATGTTGGCTATGGTA+TGG | + | chr4.3:57635832-57635851 | MS.gene025041:CDS | 50.0% |
| ! | GGAAAGCAGCATGTTGGCTA+TGG | + | chr4.3:57635827-57635846 | MS.gene025041:CDS | 50.0% |
| ! | TCAGGCTGATCCGCTACTTT+GGG | - | chr4.3:57633950-57633969 | None:intergenic | 50.0% |
| ! | TTTTCAGCTGTCAGTGGTGG+CGG | - | chr4.3:57635388-57635407 | None:intergenic | 50.0% |
| !! | AAAGTAGCGGATCAGCCTGA+GGG | + | chr4.3:57633950-57633969 | MS.gene025041:intron | 50.0% |
| AGAGGATTTCGTCGCGATCC+TGG | + | chr4.3:57633985-57634004 | MS.gene025041:intron | 55.0% | |
| AGCTCTCCTCGACGAACTCA+TGG | + | chr4.3:57633128-57633147 | MS.gene025041:CDS | 55.0% | |
| CAGCCTGAGGGAAATTGCGA+CGG | + | chr4.3:57633962-57633981 | MS.gene025041:intron | 55.0% | |
| CTCAGGCTGATCCGCTACTT+TGG | - | chr4.3:57633951-57633970 | None:intergenic | 55.0% | |
| CTCGACGAACTCATGGGTTC+AGG | + | chr4.3:57633135-57633154 | MS.gene025041:CDS | 55.0% | |
| CTGAACCCATGAGTTCGTCG+AGG | - | chr4.3:57633137-57633156 | None:intergenic | 55.0% | |
| GAGGAAGGGGGATGGTTTCT+AGG | + | chr4.3:57636193-57636212 | MS.gene025041:CDS | 55.0% | |
| GAGGGAATCGAGATCGAGGA+AGG | + | chr4.3:57636178-57636197 | MS.gene025041:CDS | 55.0% | |
| GCACGGATACTCCTCGGATT+AGG | - | chr4.3:57633691-57633710 | None:intergenic | 55.0% | |
| GCTCTCCTCGACGAACTCAT+GGG | + | chr4.3:57633129-57633148 | MS.gene025041:CDS | 55.0% | |
| GGAATCGAGATCGAGGAAGG+GGG | + | chr4.3:57636181-57636200 | MS.gene025041:CDS | 55.0% | |
| GGCACGTATGCATCATGCCT+TGG | - | chr4.3:57635158-57635177 | None:intergenic | 55.0% | |
| GGGAATCGAGATCGAGGAAG+GGG | + | chr4.3:57636180-57636199 | MS.gene025041:CDS | 55.0% | |
| GGTAGAGGGAATCGAGATCG+AGG | + | chr4.3:57636174-57636193 | MS.gene025041:CDS | 55.0% | |
| GTCGCAGGAAAGCAGCATGT+TGG | + | chr4.3:57635821-57635840 | MS.gene025041:CDS | 55.0% | |
| TCACCCCGTCTCTTTCTCTC+AGG | - | chr4.3:57636054-57636073 | None:intergenic | 55.0% | |
| TCTCCGTCGCAATTTCCCTC+AGG | - | chr4.3:57633968-57633987 | None:intergenic | 55.0% | |
| TGAGGGAAATTGCGACGGAG+AGG | + | chr4.3:57633967-57633986 | MS.gene025041:intron | 55.0% | |
| TTTCGGGCAAGCTCCTGCAT+CGG | - | chr4.3:57634399-57634418 | None:intergenic | 55.0% | |
| ! | AGATCCCGCTACCCCACTTT+TGG | + | chr4.3:57634162-57634181 | MS.gene025041:intron | 55.0% |
| ! | GGGGGATGGTTTCTAGGTTG+AGG | + | chr4.3:57636199-57636218 | MS.gene025041:CDS | 55.0% |
| !! | ATCCCGCTACCCCACTTTTG+GGG | + | chr4.3:57634164-57634183 | MS.gene025041:intron | 55.0% |
| !! | CAAAGTAGCGGATCAGCCTG+AGG | + | chr4.3:57633949-57633968 | MS.gene025041:intron | 55.0% |
| !! | CCGCTACTTTGGGATTTGCC+AGG | - | chr4.3:57633940-57633959 | None:intergenic | 55.0% |
| !! | GATCCCGCTACCCCACTTTT+GGG | + | chr4.3:57634163-57634182 | MS.gene025041:intron | 55.0% |
| AGGGTGGTCGACCCCAAAAG+TGG | - | chr4.3:57634178-57634197 | None:intergenic | 60.0% | |
| CGACCCCAAAAGTGGGGTAG+CGG | - | chr4.3:57634170-57634189 | None:intergenic | 60.0% | |
| GACCCCAAAAGTGGGGTAGC+GGG | - | chr4.3:57634169-57634188 | None:intergenic | 60.0% | |
| GGGTGGTCGACCCCAAAAGT+GGG | - | chr4.3:57634177-57634196 | None:intergenic | 60.0% | |
| GGTGGTCGACCCCAAAAGTG+GGG | - | chr4.3:57634176-57634195 | None:intergenic | 60.0% | |
| GTCGGTGCATGTCCGACTAC+AGG | + | chr4.3:57633660-57633679 | MS.gene025041:intron | 60.0% | |
| TAGAGCAACCATGTGCGGGC+AGG | - | chr4.3:57634978-57634997 | None:intergenic | 60.0% | |
| TCGAGATCGAGGAAGGGGGA+TGG | + | chr4.3:57636185-57636204 | MS.gene025041:CDS | 60.0% | |
| !! | CAATCCCGGATAGCGGAGCA+GGG | - | chr4.3:57634197-57634216 | None:intergenic | 60.0% |
| !! | TCAATCCCGGATAGCGGAGC+AGG | - | chr4.3:57634198-57634217 | None:intergenic | 60.0% |
| ACCACCCTGCTCCGCTATCC+GGG | + | chr4.3:57634190-57634209 | MS.gene025041:intron | 65.0% | |
| ATGTGCGGGCAGGCAACTGC+AGG | - | chr4.3:57634968-57634987 | None:intergenic | 65.0% | |
| GACCACCCTGCTCCGCTATC+CGG | + | chr4.3:57634189-57634208 | MS.gene025041:intron | 65.0% | |
| TGCAGTTGCCTGCCCGCACA+TGG | + | chr4.3:57634967-57634986 | MS.gene025041:intron | 65.0% | |
| !! | TCAGCTGTCAGTGGTGGCGG+TGG | - | chr4.3:57635385-57635404 | None:intergenic | 65.0% |
| !! | GCTGTCAGTGGTGGCGGTGG+TGG | - | chr4.3:57635382-57635401 | None:intergenic | 70.0% |
| !! | TCCCGGATAGCGGAGCAGGG+TGG | - | chr4.3:57634194-57634213 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 57633114 | 57636305 | 57633114 | ID=MS.gene025041 |
| chr4.3 | mRNA | 57633114 | 57636305 | 57633114 | ID=MS.gene025041.t1;Parent=MS.gene025041 |
| chr4.3 | exon | 57633114 | 57633156 | 57633114 | ID=MS.gene025041.t1.exon1;Parent=MS.gene025041.t1 |
| chr4.3 | CDS | 57633114 | 57633156 | 57633114 | ID=cds.MS.gene025041.t1;Parent=MS.gene025041.t1 |
| chr4.3 | exon | 57633235 | 57633363 | 57633235 | ID=MS.gene025041.t1.exon2;Parent=MS.gene025041.t1 |
| chr4.3 | CDS | 57633235 | 57633363 | 57633235 | ID=cds.MS.gene025041.t1;Parent=MS.gene025041.t1 |
| chr4.3 | exon | 57634405 | 57634444 | 57634405 | ID=MS.gene025041.t1.exon3;Parent=MS.gene025041.t1 |
| chr4.3 | CDS | 57634405 | 57634444 | 57634405 | ID=cds.MS.gene025041.t1;Parent=MS.gene025041.t1 |
| chr4.3 | exon | 57635142 | 57635217 | 57635142 | ID=MS.gene025041.t1.exon4;Parent=MS.gene025041.t1 |
| chr4.3 | CDS | 57635142 | 57635217 | 57635142 | ID=cds.MS.gene025041.t1;Parent=MS.gene025041.t1 |
| chr4.3 | exon | 57635316 | 57635516 | 57635316 | ID=MS.gene025041.t1.exon5;Parent=MS.gene025041.t1 |
| chr4.3 | CDS | 57635316 | 57635516 | 57635316 | ID=cds.MS.gene025041.t1;Parent=MS.gene025041.t1 |
| chr4.3 | exon | 57635674 | 57635880 | 57635674 | ID=MS.gene025041.t1.exon6;Parent=MS.gene025041.t1 |
| chr4.3 | CDS | 57635674 | 57635880 | 57635674 | ID=cds.MS.gene025041.t1;Parent=MS.gene025041.t1 |
| chr4.3 | exon | 57635967 | 57636305 | 57635967 | ID=MS.gene025041.t1.exon7;Parent=MS.gene025041.t1 |
| chr4.3 | CDS | 57635967 | 57636305 | 57635967 | ID=cds.MS.gene025041.t1;Parent=MS.gene025041.t1 |
| Gene Sequence |
| Protein sequence |
