Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062186.t1 | XP_013468845.1 | 92.9 | 169 | 12 | 0 | 1 | 169 | 1 | 169 | 3.80E-49 | 204.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062186.t1 | Q8R344 | 39.0 | 105 | 58 | 2 | 71 | 169 | 57 | 161 | 1.8e-10 | 67.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062186.t1 | A0A072VM63 | 92.9 | 169 | 12 | 0 | 1 | 169 | 1 | 169 | 2.8e-49 | 204.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene63961 | MS.gene062186 | PPI |
| MS.gene062186 | MS.gene34840 | PPI |
| MS.gene062186 | MS.gene025041 | PPI |
| MS.gene025434 | MS.gene062186 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062186.t1 | MTR_1g077570 | 96.450 | 169 | 6 | 0 | 1 | 169 | 1 | 169 | 1.21e-114 | 322 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062186.t1 | AT3G05070 | 56.173 | 162 | 47 | 2 | 1 | 162 | 1 | 138 | 1.14e-51 | 162 |
Find 47 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAACAGGATCTTCAAATT+TGG | 0.167763 | 1.1:-58051966 | None:intergenic |
| CAGGTCCCAGTTGGGTTTCT+TGG | 0.181003 | 1.1:-58052914 | None:intergenic |
| TTGTTCTTCGTCTTGATTAT+TGG | 0.250780 | 1.1:-58051703 | None:intergenic |
| GATGATCAACAAGAAGAAAA+AGG | 0.261290 | 1.1:+58051759 | MS.gene062186:CDS |
| TGTTCTTCGTCTTGATTATT+GGG | 0.276709 | 1.1:-58051702 | None:intergenic |
| AGAGTTGAACTAACCTCTTT+AGG | 0.296239 | 1.1:-58052010 | None:intergenic |
| TTCGTCTTGATTATTGGGTT+CGG | 0.316915 | 1.1:-58051697 | None:intergenic |
| ACAAGTTACAACCTAATCTT+TGG | 0.319987 | 1.1:-58054158 | None:intergenic |
| GAAACAGGATCTTCAAATTT+GGG | 0.329561 | 1.1:-58051965 | None:intergenic |
| TTGATTATTGGGTTCGGGTT+CGG | 0.333205 | 1.1:-58051691 | None:intergenic |
| TCGTCTTGATTATTGGGTTC+GGG | 0.338669 | 1.1:-58051696 | None:intergenic |
| AGGTCCCAGTTGGGTTTCTT+GGG | 0.368404 | 1.1:-58052913 | None:intergenic |
| TTGCTCAATTGATTCGTCTT+CGG | 0.383425 | 1.1:-58051604 | None:intergenic |
| GGGTTCGGGTTCGGAGGAAT+TGG | 0.388909 | 1.1:-58051682 | None:intergenic |
| TCCTCATGATAAGCATCTTC+AGG | 0.395486 | 1.1:+58051916 | MS.gene062186:CDS |
| GAAGAAGTGGGTGGTGGTTG+TGG | 0.407660 | 1.1:-58051726 | None:intergenic |
| TCAGGCTCAGGAACAGAAAC+AGG | 0.420107 | 1.1:-58051980 | None:intergenic |
| TTGTTGTAGTGAAGAGGGAG+AGG | 0.423111 | 1.1:+58051862 | MS.gene062186:intron |
| TTGTTGATCATCATCGTCTT+CGG | 0.439513 | 1.1:-58051748 | None:intergenic |
| ATCTCTTCGCAGGTCCCAGT+TGG | 0.451641 | 1.1:-58052923 | None:intergenic |
| TTGCTCCCAAGAAACCCAAC+TGG | 0.478538 | 1.1:+58052908 | MS.gene062186:CDS |
| TCAAATTTGGGAAGAACAGC+AGG | 0.488113 | 1.1:-58051953 | None:intergenic |
| GAAGGCTCTCTATCAACTCA+TGG | 0.498657 | 1.1:+58052984 | MS.gene062186:CDS |
| TACAAACGGCGCCAAAGATT+AGG | 0.500555 | 1.1:+58054147 | MS.gene062186:CDS |
| TCTCTTCGCAGGTCCCAGTT+GGG | 0.501022 | 1.1:-58052922 | None:intergenic |
| TTGGGAGCAATATTGAGAAA+CGG | 0.510040 | 1.1:-58052895 | None:intergenic |
| AGCTAGGAGTCTTTCACGGC+GGG | 0.515574 | 1.1:-58051637 | None:intergenic |
| TCTTTCACGGCGGGAAGCGA+CGG | 0.522634 | 1.1:-58051628 | None:intergenic |
| GTTGAGCGGCGCGAAGAGCT+AGG | 0.534647 | 1.1:-58051653 | None:intergenic |
| GCTTGAGAAGCGAACTCAGA+AGG | 0.553904 | 1.1:+58052966 | MS.gene062186:CDS |
| ATCATCGTCTTCGGAAGAAG+TGG | 0.558826 | 1.1:-58051739 | None:intergenic |
| CATGATAAGCATCTTCAGGA+AGG | 0.566793 | 1.1:+58051920 | MS.gene062186:CDS |
| ATTATTGGGTTCGGGTTCGG+AGG | 0.580289 | 1.1:-58051688 | None:intergenic |
| GAAGAGCTAGGAGTCTTTCA+CGG | 0.584484 | 1.1:-58051641 | None:intergenic |
| TGTTTCTGTTCCTGAGCCTG+AGG | 0.588746 | 1.1:+58051982 | MS.gene062186:CDS |
| TCTTCGGAAGAAGTGGGTGG+TGG | 0.588852 | 1.1:-58051732 | None:intergenic |
| AAGGCTCTCTATCAACTCAT+GGG | 0.591229 | 1.1:+58052985 | MS.gene062186:CDS |
| GAAGCAAAATCAGTTAGCTG+AGG | 0.593540 | 1.1:+58054117 | MS.gene062186:CDS |
| GCTGAGGGAGATGATACAAA+CGG | 0.608436 | 1.1:+58054133 | MS.gene062186:CDS |
| TGCTCCCAAGAAACCCAACT+GGG | 0.615079 | 1.1:+58052909 | MS.gene062186:CDS |
| ATGATAAGCATCTTCAGGAA+GGG | 0.624291 | 1.1:+58051921 | MS.gene062186:CDS |
| TCCTGAAGATGCTTATCATG+AGG | 0.624871 | 1.1:-58051917 | None:intergenic |
| GGAATTGGATAATTGTTGAG+CGG | 0.629730 | 1.1:-58051667 | None:intergenic |
| AAGCAAAATCAGTTAGCTGA+GGG | 0.635647 | 1.1:+58054118 | MS.gene062186:CDS |
| TCATCGTCTTCGGAAGAAGT+GGG | 0.638207 | 1.1:-58051738 | None:intergenic |
| GAGCTAGGAGTCTTTCACGG+CGG | 0.702871 | 1.1:-58051638 | None:intergenic |
| TCGTCTTCGGAAGAAGTGGG+TGG | 0.708061 | 1.1:-58051735 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTTTTATTATAATAGAAA+TGG | + | chr1.1:58052589-58052608 | MS.gene062186:intron | 10.0% |
| !! | ATTAATAAATTAAGAATCCA+TGG | + | chr1.1:58052355-58052374 | MS.gene062186:intron | 15.0% |
| !! | CTAATAGTACTAAAAAATTA+CGG | - | chr1.1:58053961-58053980 | None:intergenic | 15.0% |
| !! | GTCATATTTATAATTTATGA+TGG | + | chr1.1:58053509-58053528 | MS.gene062186:intron | 15.0% |
| !! | TTAATAAATTAAGAATCCAT+GGG | + | chr1.1:58052356-58052375 | MS.gene062186:intron | 15.0% |
| !!! | GATTCTAAAATAGAAATAAT+TGG | + | chr1.1:58053746-58053765 | MS.gene062186:intron | 15.0% |
| !!! | TTTCTTATTTTCTTACTATT+TGG | + | chr1.1:58053056-58053075 | MS.gene062186:intron | 15.0% |
| !!! | TTTTTTGAATTGAATTGAAT+TGG | + | chr1.1:58051829-58051848 | MS.gene062186:intron | 15.0% |
| !!! | TTTTTTTAATTTTTCAACAG+TGG | + | chr1.1:58054087-58054106 | MS.gene062186:intron | 15.0% |
| !! | AAATACTCATAAAATTGCTT+GGG | - | chr1.1:58052788-58052807 | None:intergenic | 20.0% |
| !! | AGAAACATTATTGTAAATGT+AGG | - | chr1.1:58053041-58053060 | None:intergenic | 20.0% |
| !! | ATAAGCTATAAGATCAAAAA+AGG | + | chr1.1:58052515-58052534 | MS.gene062186:intron | 20.0% |
| !! | CCTAATAAAAAGTAGTTAAA+AGG | - | chr1.1:58052873-58052892 | None:intergenic | 20.0% |
| !! | TAAATACTCATAAAATTGCT+TGG | - | chr1.1:58052789-58052808 | None:intergenic | 20.0% |
| !! | TGACTAATGAATTAGTATTA+GGG | + | chr1.1:58053688-58053707 | MS.gene062186:intron | 20.0% |
| !! | TTTGCTTAACTAATAATATC+TGG | + | chr1.1:58053632-58053651 | MS.gene062186:intron | 20.0% |
| !!! | ATTGTTTTTGTATAAGCTAT+AGG | - | chr1.1:58052556-58052575 | None:intergenic | 20.0% |
| !!! | CCTTTTAACTACTTTTTATT+AGG | + | chr1.1:58052870-58052889 | MS.gene062186:intron | 20.0% |
| !!! | CGTAATTTTTTAGTACTATT+AGG | + | chr1.1:58053959-58053978 | MS.gene062186:intron | 20.0% |
| !!! | GGTGTTTTTATAAGTTATTA+TGG | + | chr1.1:58052699-58052718 | MS.gene062186:intron | 20.0% |
| !!! | TTGTTTTTGTATAAGCTATA+GGG | - | chr1.1:58052555-58052574 | None:intergenic | 20.0% |
| ! | AAAAGTAGTTAAAAGGTAAG+AGG | - | chr1.1:58052866-58052885 | None:intergenic | 25.0% |
| ! | AAACAGAGTTAGAACAAAAT+TGG | + | chr1.1:58053538-58053557 | MS.gene062186:intron | 25.0% |
| ! | ATATTCAAGAGAAAGAAAGT+AGG | + | chr1.1:58053145-58053164 | MS.gene062186:intron | 25.0% |
| ! | ATGATCAACAAGAAGAAAAA+GGG | + | chr1.1:58051760-58051779 | MS.gene062186:CDS | 25.0% |
| ! | ATTAAGCTGTTTATACAAAC+AGG | + | chr1.1:58052645-58052664 | MS.gene062186:intron | 25.0% |
| ! | CTGACTAATGAATTAGTATT+AGG | + | chr1.1:58053687-58053706 | MS.gene062186:intron | 25.0% |
| ! | GAAATTGGCAATAATACTTA+GGG | - | chr1.1:58053868-58053887 | None:intergenic | 25.0% |
| ! | TAACTTATAAAAACACCTTC+CGG | - | chr1.1:58052696-58052715 | None:intergenic | 25.0% |
| ! | TACTTAAGTTAATCGAAACA+AGG | - | chr1.1:58052044-58052063 | None:intergenic | 25.0% |
| ! | TAGCTTATGGAAATAGATTA+TGG | + | chr1.1:58052179-58052198 | MS.gene062186:intron | 25.0% |
| ! | TATGGATAGTCTATAGAAAT+AGG | + | chr1.1:58052717-58052736 | MS.gene062186:intron | 25.0% |
| ! | TATTCAAGAGAAAGAAAGTA+GGG | + | chr1.1:58053146-58053165 | MS.gene062186:intron | 25.0% |
| ! | TGAAATTGGCAATAATACTT+AGG | - | chr1.1:58053869-58053888 | None:intergenic | 25.0% |
| ! | TGTAATCATAGAATCAGAAA+TGG | - | chr1.1:58053323-58053342 | None:intergenic | 25.0% |
| ! | TTTGACTAAAAAGACAAGTT+TGG | - | chr1.1:58052481-58052500 | None:intergenic | 25.0% |
| !! | CTTATCATTAATTTTACCCA+TGG | - | chr1.1:58052375-58052394 | None:intergenic | 25.0% |
| !! | TTTGACACATTTTCAATGAA+TGG | + | chr1.1:58053088-58053107 | MS.gene062186:intron | 25.0% |
| !! | TTTTTGCAATCAGTATTTCA+TGG | - | chr1.1:58053352-58053371 | None:intergenic | 25.0% |
| !!! | AAATAGATTATGGCTTTGTT+TGG | + | chr1.1:58052189-58052208 | MS.gene062186:intron | 25.0% |
| !!! | TCAAATTGTTTTATACAAGC+CGG | + | chr1.1:58052674-58052693 | MS.gene062186:intron | 25.0% |
| AGAAACAGGATCTTCAAATT+TGG | - | chr1.1:58051969-58051988 | None:intergenic | 30.0% | |
| AGAACTTAAGCTGTTATGAA+CGG | + | chr1.1:58053235-58053254 | MS.gene062186:intron | 30.0% | |
| AGTACATACTCAGAAATCTA+TGG | - | chr1.1:58053451-58053470 | None:intergenic | 30.0% | |
| CAAGACAAAATTTCTTCTGT+AGG | + | chr1.1:58053828-58053847 | MS.gene062186:intron | 30.0% | |
| GAAACAGGATCTTCAAATTT+GGG | - | chr1.1:58051968-58051987 | None:intergenic | 30.0% | |
| GATGATCAACAAGAAGAAAA+AGG | + | chr1.1:58051759-58051778 | MS.gene062186:CDS | 30.0% | |
| GCTAGTTGATTGAATTTGTA+GGG | + | chr1.1:58052269-58052288 | MS.gene062186:intron | 30.0% | |
| GCTTATGTTATGTGTATTTC+TGG | + | chr1.1:58052085-58052104 | MS.gene062186:intron | 30.0% | |
| GTACATACTCAGAAATCTAT+GGG | - | chr1.1:58053450-58053469 | None:intergenic | 30.0% | |
| TATACAAGCAGTTAATGACA+TGG | - | chr1.1:58052759-58052778 | None:intergenic | 30.0% | |
| TGTTCTTCGTCTTGATTATT+GGG | - | chr1.1:58051705-58051724 | None:intergenic | 30.0% | |
| TTGATTGAATTTGTAGGGTT+TGG | + | chr1.1:58052274-58052293 | MS.gene062186:intron | 30.0% | |
| TTGTTCTTCGTCTTGATTAT+TGG | - | chr1.1:58051706-58051725 | None:intergenic | 30.0% | |
| TTTGTTCTAACTCTGTTTCA+TGG | - | chr1.1:58053536-58053555 | None:intergenic | 30.0% | |
| ! | ATTTTCAATGAATGGTGAGT+TGG | + | chr1.1:58053096-58053115 | MS.gene062186:intron | 30.0% |
| ! | GAACTTGTGAGATTTGAAAT+TGG | - | chr1.1:58053883-58053902 | None:intergenic | 30.0% |
| ! | GTAGGGTTTGGTAAAATTAA+CGG | + | chr1.1:58052286-58052305 | MS.gene062186:intron | 30.0% |
| ! | TTGAGTGATTTGAAATCTGT+CGG | + | chr1.1:58053393-58053412 | MS.gene062186:intron | 30.0% |
| ! | TTGATTTTGTTCCATGAATG+TGG | + | chr1.1:58054042-58054061 | MS.gene062186:intron | 30.0% |
| ! | TTTTCAATGAATGGTGAGTT+GGG | + | chr1.1:58053097-58053116 | MS.gene062186:intron | 30.0% |
| !!! | TTTTGTTGTTGTAGTGAAGA+GGG | + | chr1.1:58051857-58051876 | MS.gene062186:intron | 30.0% |
| !!! | TTTTTGTTGTTGTAGTGAAG+AGG | + | chr1.1:58051856-58051875 | MS.gene062186:intron | 30.0% |
| AAAACTGTTGGATGAGGATT+AGG | + | chr1.1:58053261-58053280 | MS.gene062186:intron | 35.0% | |
| AAGCAAAATCAGTTAGCTGA+GGG | + | chr1.1:58054118-58054137 | MS.gene062186:CDS | 35.0% | |
| AATCCTTAACAAGTGCTCTA+AGG | - | chr1.1:58053730-58053749 | None:intergenic | 35.0% | |
| AGAGTTGAACTAACCTCTTT+AGG | - | chr1.1:58052013-58052032 | None:intergenic | 35.0% | |
| ATAAGCAGTTGTGACTGTTT+GGG | + | chr1.1:58052109-58052128 | MS.gene062186:intron | 35.0% | |
| ATGATAAGCATCTTCAGGAA+GGG | + | chr1.1:58051921-58051940 | MS.gene062186:CDS | 35.0% | |
| ATTCAGAGTAAGGTCATGTT+TGG | - | chr1.1:58052841-58052860 | None:intergenic | 35.0% | |
| CTAGATAGAATAACTTCACC+TGG | + | chr1.1:58053198-58053217 | MS.gene062186:intron | 35.0% | |
| CTATGAAAAACTATAGCCAG+CGG | - | chr1.1:58053914-58053933 | None:intergenic | 35.0% | |
| GGAATTGGATAATTGTTGAG+CGG | - | chr1.1:58051670-58051689 | None:intergenic | 35.0% | |
| TATAAGCTATAGGGTCTGTT+TGG | - | chr1.1:58052546-58052565 | None:intergenic | 35.0% | |
| TATGAACGGATCAAAACTGT+TGG | + | chr1.1:58053249-58053268 | MS.gene062186:intron | 35.0% | |
| TTCGTCTTGATTATTGGGTT+CGG | - | chr1.1:58051700-58051719 | None:intergenic | 35.0% | |
| TTGGGAGCAATATTGAGAAA+CGG | - | chr1.1:58052898-58052917 | None:intergenic | 35.0% | |
| TTGTTGATCATCATCGTCTT+CGG | - | chr1.1:58051751-58051770 | None:intergenic | 35.0% | |
| ! | GGACTTTGGAGACATTATAA+TGG | + | chr1.1:58054063-58054082 | MS.gene062186:intron | 35.0% |
| ! | GGCTAGTTGATTGAATTTGT+AGG | + | chr1.1:58052268-58052287 | MS.gene062186:intron | 35.0% |
| ! | TATCCTTAGAGCACTTGTTA+AGG | + | chr1.1:58053724-58053743 | MS.gene062186:intron | 35.0% |
| !! | ACAAGTTCTTTTATTTCCGC+TGG | + | chr1.1:58053895-58053914 | MS.gene062186:intron | 35.0% |
| !! | ATTGTTTTATACAAGCCGGA+AGG | + | chr1.1:58052678-58052697 | MS.gene062186:intron | 35.0% |
| !! | TTGCTCAATTGATTCGTCTT+CGG | - | chr1.1:58051607-58051626 | None:intergenic | 35.0% |
| !!! | GCAAAAACACTGATTTTCTC+TGG | + | chr1.1:58053365-58053384 | MS.gene062186:intron | 35.0% |
| AAGCTCTCGAAGATAGCTTA+TGG | + | chr1.1:58052166-58052185 | MS.gene062186:intron | 40.0% | |
| AAGGCTCTCTATCAACTCAT+GGG | + | chr1.1:58052985-58053004 | MS.gene062186:CDS | 40.0% | |
| ATCAGCTCATGAGAAAGTGA+TGG | + | chr1.1:58052452-58052471 | MS.gene062186:intron | 40.0% | |
| ATGACAGTGACAATGACTTG+AGG | - | chr1.1:58053477-58053496 | None:intergenic | 40.0% | |
| CATAAGCAGTTGTGACTGTT+TGG | + | chr1.1:58052108-58052127 | MS.gene062186:intron | 40.0% | |
| CATGATAAGCATCTTCAGGA+AGG | + | chr1.1:58051920-58051939 | MS.gene062186:CDS | 40.0% | |
| CTCATAAAATTGCTTGGGAG+AGG | - | chr1.1:58052783-58052802 | None:intergenic | 40.0% | |
| GAAGCAAAATCAGTTAGCTG+AGG | + | chr1.1:58054117-58054136 | MS.gene062186:CDS | 40.0% | |
| GTAAGAGGCAATTCAGAGTA+AGG | - | chr1.1:58052851-58052870 | None:intergenic | 40.0% | |
| TCAAATTTGGGAAGAACAGC+AGG | - | chr1.1:58051956-58051975 | None:intergenic | 40.0% | |
| TCAAGAGAAAGAAAGTAGGG+AGG | + | chr1.1:58053149-58053168 | MS.gene062186:intron | 40.0% | |
| TCCTCATGATAAGCATCTTC+AGG | + | chr1.1:58051916-58051935 | MS.gene062186:CDS | 40.0% | |
| TCCTGAAGATGCTTATCATG+AGG | - | chr1.1:58051920-58051939 | None:intergenic | 40.0% | |
| TCGTCTTGATTATTGGGTTC+GGG | - | chr1.1:58051699-58051718 | None:intergenic | 40.0% | |
| TGAAAGAACCTGCAAAGACA+TGG | - | chr1.1:58053937-58053956 | None:intergenic | 40.0% | |
| TGACAGTGACAATGACTTGA+GGG | - | chr1.1:58053476-58053495 | None:intergenic | 40.0% | |
| TGTTCCATGAATGTGGACTT+TGG | + | chr1.1:58054049-58054068 | MS.gene062186:intron | 40.0% | |
| TTCTAAACTACAGCGAATCC+AGG | - | chr1.1:58053219-58053238 | None:intergenic | 40.0% | |
| TTTCATAGCCATGTCTTTGC+AGG | + | chr1.1:58053926-58053945 | MS.gene062186:intron | 40.0% | |
| ! | ATGAATGGTGAGTTGGGAAA+TGG | + | chr1.1:58053103-58053122 | MS.gene062186:intron | 40.0% |
| ! | GTTGATAAGCTAGCTTACAG+TGG | + | chr1.1:58052235-58052254 | MS.gene062186:intron | 40.0% |
| ! | TGAATGGTGAGTTGGGAAAT+GGG | + | chr1.1:58053104-58053123 | MS.gene062186:intron | 40.0% |
| ! | TTGATTATTGGGTTCGGGTT+CGG | - | chr1.1:58051694-58051713 | None:intergenic | 40.0% |
| !! | ACCTCTTTAGGTTTTTCCTC+AGG | - | chr1.1:58052001-58052020 | None:intergenic | 40.0% |
| ATCATCGTCTTCGGAAGAAG+TGG | - | chr1.1:58051742-58051761 | None:intergenic | 45.0% | |
| CGGATCAAAACTGTTGGATG+AGG | + | chr1.1:58053255-58053274 | MS.gene062186:intron | 45.0% | |
| GAAGAGCTAGGAGTCTTTCA+CGG | - | chr1.1:58051644-58051663 | None:intergenic | 45.0% | |
| GAAGGCTCTCTATCAACTCA+TGG | + | chr1.1:58052984-58053003 | MS.gene062186:CDS | 45.0% | |
| GCCTGAGGAAAAACCTAAAG+AGG | + | chr1.1:58051997-58052016 | MS.gene062186:CDS | 45.0% | |
| GCTGAGGGAGATGATACAAA+CGG | + | chr1.1:58054133-58054152 | MS.gene062186:CDS | 45.0% | |
| GCTTACAGTGGATAGCGAAT+TGG | + | chr1.1:58052247-58052266 | MS.gene062186:intron | 45.0% | |
| GTCTCCAAAGTCCACATTCA+TGG | - | chr1.1:58054056-58054075 | None:intergenic | 45.0% | |
| TCATCGTCTTCGGAAGAAGT+GGG | - | chr1.1:58051741-58051760 | None:intergenic | 45.0% | |
| TTGTTGTAGTGAAGAGGGAG+AGG | + | chr1.1:58051862-58051881 | MS.gene062186:intron | 45.0% | |
| ! | TTAGGTTTTTCCTCAGGCTC+AGG | - | chr1.1:58051995-58052014 | None:intergenic | 45.0% |
| ! | TTTTCTGCACATCTCTTCGC+AGG | - | chr1.1:58052936-58052955 | None:intergenic | 45.0% |
| !! | TTATAATAAAAGATAAAATA+TGG | - | chr1.1:58052583-58052602 | None:intergenic | 5.0% |
| AGGTCCCAGTTGGGTTTCTT+GGG | - | chr1.1:58052916-58052935 | None:intergenic | 50.0% | |
| GCTTGAGAAGCGAACTCAGA+AGG | + | chr1.1:58052966-58052985 | MS.gene062186:CDS | 50.0% | |
| TCAGGCTCAGGAACAGAAAC+AGG | - | chr1.1:58051983-58052002 | None:intergenic | 50.0% | |
| TGCTCCCAAGAAACCCAACT+GGG | + | chr1.1:58052909-58052928 | MS.gene062186:CDS | 50.0% | |
| TTGCTCCCAAGAAACCCAAC+TGG | + | chr1.1:58052908-58052927 | MS.gene062186:CDS | 50.0% | |
| ! | ATTATTGGGTTCGGGTTCGG+AGG | - | chr1.1:58051691-58051710 | None:intergenic | 50.0% |
| ! | TGTTTCTGTTCCTGAGCCTG+AGG | + | chr1.1:58051982-58052001 | MS.gene062186:CDS | 50.0% |
| AGCTAGGAGTCTTTCACGGC+GGG | - | chr1.1:58051640-58051659 | None:intergenic | 55.0% | |
| ATCTCTTCGCAGGTCCCAGT+TGG | - | chr1.1:58052926-58052945 | None:intergenic | 55.0% | |
| CAGGTCCCAGTTGGGTTTCT+TGG | - | chr1.1:58052917-58052936 | None:intergenic | 55.0% | |
| GAGCTAGGAGTCTTTCACGG+CGG | - | chr1.1:58051641-58051660 | None:intergenic | 55.0% | |
| TCGTCTTCGGAAGAAGTGGG+TGG | - | chr1.1:58051738-58051757 | None:intergenic | 55.0% | |
| TCTCTTCGCAGGTCCCAGTT+GGG | - | chr1.1:58052925-58052944 | None:intergenic | 55.0% | |
| TCTTCGGAAGAAGTGGGTGG+TGG | - | chr1.1:58051735-58051754 | None:intergenic | 55.0% | |
| ! | GAAGAAGTGGGTGGTGGTTG+TGG | - | chr1.1:58051729-58051748 | None:intergenic | 55.0% |
| TCTTTCACGGCGGGAAGCGA+CGG | - | chr1.1:58051631-58051650 | None:intergenic | 60.0% | |
| ! | GGGTTCGGGTTCGGAGGAAT+TGG | - | chr1.1:58051685-58051704 | None:intergenic | 60.0% |
| GTTGAGCGGCGCGAAGAGCT+AGG | - | chr1.1:58051656-58051675 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 58051597 | 58054168 | 58051597 | ID=MS.gene062186 |
| chr1.1 | mRNA | 58051597 | 58054168 | 58051597 | ID=MS.gene062186.t1;Parent=MS.gene062186 |
| chr1.1 | exon | 58051597 | 58051781 | 58051597 | ID=MS.gene062186.t1.exon1;Parent=MS.gene062186.t1 |
| chr1.1 | CDS | 58051597 | 58051781 | 58051597 | ID=cds.MS.gene062186.t1;Parent=MS.gene062186.t1 |
| chr1.1 | exon | 58051871 | 58052018 | 58051871 | ID=MS.gene062186.t1.exon2;Parent=MS.gene062186.t1 |
| chr1.1 | CDS | 58051871 | 58052018 | 58051871 | ID=cds.MS.gene062186.t1;Parent=MS.gene062186.t1 |
| chr1.1 | exon | 58052892 | 58053006 | 58052892 | ID=MS.gene062186.t1.exon3;Parent=MS.gene062186.t1 |
| chr1.1 | CDS | 58052892 | 58053006 | 58052892 | ID=cds.MS.gene062186.t1;Parent=MS.gene062186.t1 |
| chr1.1 | exon | 58054107 | 58054168 | 58054107 | ID=MS.gene062186.t1.exon4;Parent=MS.gene062186.t1 |
| chr1.1 | CDS | 58054107 | 58054168 | 58054107 | ID=cds.MS.gene062186.t1;Parent=MS.gene062186.t1 |
| Gene Sequence |
| Protein sequence |