Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004956.t1 | XP_013468845.1 | 92.9 | 169 | 12 | 0 | 1 | 169 | 1 | 169 | 1.90E-48 | 202.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004956.t1 | Q8R344 | 43.2 | 88 | 46 | 1 | 71 | 154 | 57 | 144 | 1.3e-10 | 67.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004956.t1 | A0A072VM63 | 92.9 | 169 | 12 | 0 | 1 | 169 | 1 | 169 | 1.4e-48 | 202.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene34840 | MS.gene004956 | PPI |
| MS.gene025434 | MS.gene004956 | PPI |
| MS.gene63961 | MS.gene004956 | PPI |
| MS.gene004956 | MS.gene025041 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004956.t1 | MTR_1g077570 | 96.450 | 169 | 6 | 0 | 1 | 169 | 1 | 169 | 4.75e-114 | 321 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004956.t1 | AT3G05070 | 56.790 | 162 | 46 | 2 | 1 | 162 | 1 | 138 | 4.89e-51 | 160 |
Find 40 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGTCCCAGTTGGGTTTCT+TGG | 0.181003 | 1.4:-63567124 | None:intergenic |
| AAACCCTAACTAACCTCTTT+AGG | 0.236065 | 1.4:-63566078 | None:intergenic |
| TTGTTCTTCGTCTTGATTAT+TGG | 0.250780 | 1.4:-63565747 | None:intergenic |
| GATGAACAACAAGAAGAAAA+AGG | 0.265883 | 1.4:+63565803 | MS.gene004956:CDS |
| TGTTCTTCGTCTTGATTATT+GGG | 0.276709 | 1.4:-63565746 | None:intergenic |
| TCGTCTTGATTATTGGGTTC+AGG | 0.316855 | 1.4:-63565740 | None:intergenic |
| ACAAGTTACAACCTAATCTT+TGG | 0.321549 | 1.4:-63568330 | None:intergenic |
| AGGTCCCAGTTGGGTTTCTT+GGG | 0.368404 | 1.4:-63567123 | None:intergenic |
| GGGTTCAGGTTCGGAAGAAT+TGG | 0.407733 | 1.4:-63565726 | None:intergenic |
| TTGATTATTGGGTTCAGGTT+CGG | 0.417711 | 1.4:-63565735 | None:intergenic |
| TTGTTGTTCATCATCATCTT+CGG | 0.433434 | 1.4:-63565792 | None:intergenic |
| GAAGAAGTGGGTGGTGGATG+TGG | 0.437483 | 1.4:-63565770 | None:intergenic |
| ATCTCTTCGCAGGTCCCAGT+TGG | 0.451641 | 1.4:-63567133 | None:intergenic |
| TTGCTCCCAAGAAACCCAAC+TGG | 0.478538 | 1.4:+63567118 | MS.gene004956:CDS |
| GTGTTGTAGTGAAGAGGGAG+AGG | 0.494992 | 1.4:+63565930 | MS.gene004956:intron |
| TCAAACTTCGGAAGCACAGC+AGG | 0.496338 | 1.4:-63566021 | None:intergenic |
| CACGATAAGAATCTTCAAGA+AGG | 0.496542 | 1.4:+63565988 | MS.gene004956:CDS |
| GAAGGCTCTCTATCAACTCA+TGG | 0.498657 | 1.4:+63567194 | MS.gene004956:CDS |
| TCTCTTCGCAGGTCCCAGTT+GGG | 0.501022 | 1.4:-63567132 | None:intergenic |
| TACAAATGGTACCAAAGATT+AGG | 0.501814 | 1.4:+63568319 | MS.gene004956:CDS |
| TTGCTCGATTGATTCGTCTT+CGG | 0.505346 | 1.4:-63565648 | None:intergenic |
| TCTTCTGCACATCTCTTCGC+AGG | 0.509218 | 1.4:-63567143 | None:intergenic |
| TTGGGAGCAATATTGAGAAA+CGG | 0.510040 | 1.4:-63567105 | None:intergenic |
| TCAGGCTCAGGAACAGAAGC+AGG | 0.522945 | 1.4:-63566048 | None:intergenic |
| ATCATCATCTTCGGAAGAAG+TGG | 0.530874 | 1.4:-63565783 | None:intergenic |
| GAAGAGCTAAGAGTCTTTCA+CGG | 0.546896 | 1.4:-63565685 | None:intergenic |
| GCTTGAGAAGCGAACTCAGA+AGG | 0.553904 | 1.4:+63567176 | MS.gene004956:CDS |
| GCTGAGGAAGATGATACAAA+TGG | 0.556701 | 1.4:+63568305 | MS.gene004956:CDS |
| TCTTTCACGGCGAGAAGCGA+CGG | 0.560293 | 1.4:-63565672 | None:intergenic |
| TCTTGAAGATTCTTATCGTG+AGG | 0.568643 | 1.4:-63565985 | None:intergenic |
| TCTTCGGAAGAAGTGGGTGG+TGG | 0.571293 | 1.4:-63565776 | None:intergenic |
| TGCTTCTGTTCCTGAGCCTG+AGG | 0.572422 | 1.4:+63566050 | MS.gene004956:CDS |
| GAAGCAGGATCTTCAAACTT+CGG | 0.580530 | 1.4:-63566033 | None:intergenic |
| ACGATAAGAATCTTCAAGAA+GGG | 0.581031 | 1.4:+63565989 | MS.gene004956:CDS |
| AAGGCTCTCTATCAACTCAT+GGG | 0.591229 | 1.4:+63567195 | MS.gene004956:CDS |
| TGCTCCCAAGAAACCCAACT+GGG | 0.615079 | 1.4:+63567119 | MS.gene004956:CDS |
| GAAGCAAAATCAGTTAGCTG+AGG | 0.616037 | 1.4:+63568289 | MS.gene004956:CDS |
| TCATCATCTTCGGAAGAAGT+GGG | 0.638207 | 1.4:-63565782 | None:intergenic |
| AGAATTGGATAATTGTTGAG+CGG | 0.667826 | 1.4:-63565711 | None:intergenic |
| TCATCTTCGGAAGAAGTGGG+TGG | 0.710080 | 1.4:-63565779 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAGTGTTTATTATATAA+TGG | + | chr1.4:63566150-63566169 | MS.gene004956:intron | 15.0% |
| !! | ATCAGTGTTTATTATATAAT+GGG | + | chr1.4:63566151-63566170 | MS.gene004956:intron | 15.0% |
| !! | CTATAAGAAAAGATAAAATA+AGG | - | chr1.4:63566855-63566874 | None:intergenic | 15.0% |
| !! | GTCATATTTACAATTTATAA+TGG | + | chr1.4:63567719-63567738 | MS.gene004956:intron | 15.0% |
| !!! | TTTATCTTTTCTTATAGAAA+TGG | + | chr1.4:63566858-63566877 | MS.gene004956:intron | 15.0% |
| !!! | TTTCTTATTTTCTTAGTATT+TGG | + | chr1.4:63567266-63567285 | MS.gene004956:intron | 15.0% |
| !! | CCTAATAAAAAGTAGTTAAA+AGG | - | chr1.4:63567083-63567102 | None:intergenic | 20.0% |
| !! | GAAACATTATCTTAAATGTA+CGG | - | chr1.4:63567250-63567269 | None:intergenic | 20.0% |
| !! | TGACTAATGAATTAGTATTA+GGG | + | chr1.4:63567900-63567919 | MS.gene004956:intron | 20.0% |
| !! | TTTATTTGAGCTTATATTAC+TGG | + | chr1.4:63566188-63566207 | MS.gene004956:intron | 20.0% |
| !! | TTTGCTTAACTAATAATATC+TGG | + | chr1.4:63567844-63567863 | MS.gene004956:intron | 20.0% |
| !!! | AAATAGATTATAGCTTTGTT+TGG | + | chr1.4:63566291-63566310 | MS.gene004956:intron | 20.0% |
| !!! | AATTTGAATTGGATTGTTTT+TGG | + | chr1.4:63565908-63565927 | MS.gene004956:intron | 20.0% |
| !!! | ACTCAAAATTTTAAAAGACT+CGG | - | chr1.4:63567785-63567804 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTGTATAAGCTAT+AGG | - | chr1.4:63566828-63566847 | None:intergenic | 20.0% |
| !!! | ATTTACACATTTTCAATGAA+TGG | + | chr1.4:63567297-63567316 | MS.gene004956:intron | 20.0% |
| !!! | ATTTTCAATTAAGAATCCAT+GGG | + | chr1.4:63566627-63566646 | MS.gene004956:intron | 20.0% |
| !!! | CCTTTTAACTACTTTTTATT+AGG | + | chr1.4:63567080-63567099 | MS.gene004956:intron | 20.0% |
| !!! | GATTTTTTATTTTTCAACAG+TGG | + | chr1.4:63568259-63568278 | MS.gene004956:intron | 20.0% |
| !!! | TATTTTCAATTAAGAATCCA+TGG | + | chr1.4:63566626-63566645 | MS.gene004956:intron | 20.0% |
| !!! | TTGTTTTTGTATAAGCTATA+GGG | - | chr1.4:63566827-63566846 | None:intergenic | 20.0% |
| !!! | TTTTTGCAATTAGTATTTCA+TGG | - | chr1.4:63567560-63567579 | None:intergenic | 20.0% |
| ! | AAAAGTAGTTAAAAGGTAAG+AGG | - | chr1.4:63567076-63567095 | None:intergenic | 25.0% |
| ! | AAACACTCATAAAATTGCTT+GGG | - | chr1.4:63566998-63567017 | None:intergenic | 25.0% |
| ! | AAACAGAGTTAGAACAAAAT+TGG | + | chr1.4:63567748-63567767 | MS.gene004956:intron | 25.0% |
| ! | ATGAACAACAAGAAGAAAAA+GGG | + | chr1.4:63565804-63565823 | MS.gene004956:CDS | 25.0% |
| ! | ATTAAACTGTTTATCCAAAC+AGG | + | chr1.4:63566914-63566933 | MS.gene004956:intron | 25.0% |
| ! | ATTCACTGTAATCATAGAAT+TGG | - | chr1.4:63567537-63567556 | None:intergenic | 25.0% |
| ! | CTAATACTAATTCATTAGTC+AGG | - | chr1.4:63567901-63567920 | None:intergenic | 25.0% |
| ! | CTACTAGCACTAAAAAATTA+CGG | - | chr1.4:63568136-63568155 | None:intergenic | 25.0% |
| ! | CTGACTAATGAATTAGTATT+AGG | + | chr1.4:63567899-63567918 | MS.gene004956:intron | 25.0% |
| ! | CTTCATAGATTGAATATGTA+GGG | + | chr1.4:63566524-63566543 | MS.gene004956:intron | 25.0% |
| ! | GAAATTGACAATAATACCAA+GGG | - | chr1.4:63568046-63568065 | None:intergenic | 25.0% |
| ! | TAAACACTCATAAAATTGCT+TGG | - | chr1.4:63566999-63567018 | None:intergenic | 25.0% |
| ! | TAAAGAAGAAATTCTGTCTT+GGG | - | chr1.4:63567982-63568001 | None:intergenic | 25.0% |
| ! | TAAGCTATAAGCTCAAAAAA+AGG | + | chr1.4:63566787-63566806 | MS.gene004956:intron | 25.0% |
| ! | TAATTGAGCTGAATTTGAAT+TGG | + | chr1.4:63565897-63565916 | MS.gene004956:intron | 25.0% |
| ! | TACTTAAGTTAATCGAAACA+AGG | - | chr1.4:63566131-63566150 | None:intergenic | 25.0% |
| ! | TCAAATAAACCAATCAAAAC+AGG | - | chr1.4:63566177-63566196 | None:intergenic | 25.0% |
| ! | TGAAATTGACAATAATACCA+AGG | - | chr1.4:63568047-63568066 | None:intergenic | 25.0% |
| ! | TGTAATCATAGAATTGGAAA+TGG | - | chr1.4:63567531-63567550 | None:intergenic | 25.0% |
| ! | TTTATCATTAATTCTACCCA+TGG | - | chr1.4:63566646-63566665 | None:intergenic | 25.0% |
| !! | TAGAGTTATTTGAAATCTGT+CGG | + | chr1.4:63567601-63567620 | MS.gene004956:intron | 25.0% |
| AATCATAGAATTGGAAATGG+TGG | - | chr1.4:63567528-63567547 | None:intergenic | 30.0% | |
| AATGAACAGATCAAAACTGT+TGG | + | chr1.4:63567458-63567477 | MS.gene004956:intron | 30.0% | |
| ACGATAAGAATCTTCAAGAA+GGG | + | chr1.4:63565989-63566008 | MS.gene004956:CDS | 30.0% | |
| AGAATTGGATAATTGTTGAG+CGG | - | chr1.4:63565714-63565733 | None:intergenic | 30.0% | |
| AGTAAGAGAGAGTTGAAATT+AGG | - | chr1.4:63566108-63566127 | None:intergenic | 30.0% | |
| AGTACATACTCAGAAATCTA+TGG | - | chr1.4:63567659-63567678 | None:intergenic | 30.0% | |
| CAAGACAGAATTTCTTCTTT+AGG | + | chr1.4:63567981-63568000 | MS.gene004956:intron | 30.0% | |
| CATATTCAATCTATGAAGCA+CGG | - | chr1.4:63566522-63566541 | None:intergenic | 30.0% | |
| CTAAAGAAGAAATTCTGTCT+TGG | - | chr1.4:63567983-63568002 | None:intergenic | 30.0% | |
| CTAGATAGAATAATTTCACC+TGG | + | chr1.4:63567407-63567426 | MS.gene004956:intron | 30.0% | |
| GATGAACAACAAGAAGAAAA+AGG | + | chr1.4:63565803-63565822 | MS.gene004956:CDS | 30.0% | |
| GCTTCATAGATTGAATATGT+AGG | + | chr1.4:63566523-63566542 | MS.gene004956:intron | 30.0% | |
| GTACATACTCAGAAATCTAT+GGG | - | chr1.4:63567658-63567677 | None:intergenic | 30.0% | |
| TAAAAGAACCTGCAAAGATA+TGG | - | chr1.4:63568112-63568131 | None:intergenic | 30.0% | |
| TAGATTGAATATGTAGGGTT+TGG | + | chr1.4:63566529-63566548 | MS.gene004956:intron | 30.0% | |
| TGTTCTTCGTCTTGATTATT+GGG | - | chr1.4:63565749-63565768 | None:intergenic | 30.0% | |
| TTCAGCGTAATTATATGTGT+TGG | - | chr1.4:63566444-63566463 | None:intergenic | 30.0% | |
| TTGTCAATTTCAAATCTCAC+AGG | + | chr1.4:63568055-63568074 | MS.gene004956:intron | 30.0% | |
| TTGTTCTTCGTCTTGATTAT+TGG | - | chr1.4:63565750-63565769 | None:intergenic | 30.0% | |
| TTTGACTAAAAAGACCTGTT+TGG | - | chr1.4:63566752-63566771 | None:intergenic | 30.0% | |
| ! | AAAACCTAAAGAGGTTAGTT+AGG | + | chr1.4:63566074-63566093 | MS.gene004956:intron | 30.0% |
| ! | AAACCTAAAGAGGTTAGTTA+GGG | + | chr1.4:63566075-63566094 | MS.gene004956:intron | 30.0% |
| ! | ATTTTCAATGAATGGTGAGT+TGG | + | chr1.4:63567305-63567324 | MS.gene004956:intron | 30.0% |
| ! | CAAATTGTTGTTATACAAGC+TGG | + | chr1.4:63566944-63566963 | MS.gene004956:intron | 30.0% |
| ! | TGTAGGGTTTGGTAAATTAT+TGG | + | chr1.4:63566540-63566559 | MS.gene004956:intron | 30.0% |
| ! | TTGATTTTGTTCCATGAATG+TGG | + | chr1.4:63568216-63568235 | MS.gene004956:intron | 30.0% |
| ! | TTGTTGTTCATCATCATCTT+CGG | - | chr1.4:63565795-63565814 | None:intergenic | 30.0% |
| ! | TTTTCAATGAATGGTGAGTT+GGG | + | chr1.4:63567306-63567325 | MS.gene004956:intron | 30.0% |
| !! | TTCAAATAACTCTAGAACAC+CGG | - | chr1.4:63567595-63567614 | None:intergenic | 30.0% |
| !!! | CGTAATTTTTTAGTGCTAGT+AGG | + | chr1.4:63568134-63568153 | MS.gene004956:intron | 30.0% |
| AAAACTGTTGGATGAGGATT+AGG | + | chr1.4:63567470-63567489 | MS.gene004956:intron | 35.0% | |
| AAACCCTAACTAACCTCTTT+AGG | - | chr1.4:63566081-63566100 | None:intergenic | 35.0% | |
| AAGCTCTCAAAGATAGCTTA+TGG | + | chr1.4:63566268-63566287 | MS.gene004956:intron | 35.0% | |
| AGATCTCCTAAATAGTCACA+AGG | - | chr1.4:63566221-63566240 | None:intergenic | 35.0% | |
| ATAAGCCCTTGTGACTATTT+AGG | + | chr1.4:63566212-63566231 | MS.gene004956:intron | 35.0% | |
| ATACACAAGAGAAAGAGAGT+AGG | + | chr1.4:63567354-63567373 | MS.gene004956:intron | 35.0% | |
| ATTCAGAGTAAGGTCATGTT+TGG | - | chr1.4:63567051-63567070 | None:intergenic | 35.0% | |
| CAATTTGACATAGACCTGTT+TGG | - | chr1.4:63566931-63566950 | None:intergenic | 35.0% | |
| CACGATAAGAATCTTCAAGA+AGG | + | chr1.4:63565988-63566007 | MS.gene004956:CDS | 35.0% | |
| GATCTCCTAAATAGTCACAA+GGG | - | chr1.4:63566220-63566239 | None:intergenic | 35.0% | |
| GCAAAAACACTGAATTTCTC+CGG | + | chr1.4:63567573-63567592 | MS.gene004956:intron | 35.0% | |
| TACACAAGAGAAAGAGAGTA+GGG | + | chr1.4:63567355-63567374 | MS.gene004956:intron | 35.0% | |
| TATAAGCTATAGGGTCTGTT+TGG | - | chr1.4:63566818-63566837 | None:intergenic | 35.0% | |
| TCTTGAAGATTCTTATCGTG+AGG | - | chr1.4:63565988-63566007 | None:intergenic | 35.0% | |
| TTCTAAACTACAGCAAATCC+AGG | - | chr1.4:63567428-63567447 | None:intergenic | 35.0% | |
| TTGGGAGCAATATTGAGAAA+CGG | - | chr1.4:63567108-63567127 | None:intergenic | 35.0% | |
| TTTAGTCAAATGAGCACACA+AGG | + | chr1.4:63566762-63566781 | MS.gene004956:intron | 35.0% | |
| TTTCATAGCCATATCTTTGC+AGG | + | chr1.4:63568101-63568120 | MS.gene004956:intron | 35.0% | |
| TTTCTTAACAAGTGCCCTAA+GGG | + | chr1.4:63568005-63568024 | MS.gene004956:intron | 35.0% | |
| ! | GGACTTTGGAGACATTATAA+TGG | + | chr1.4:63568237-63568256 | MS.gene004956:intron | 35.0% |
| ! | TTGATTATTGGGTTCAGGTT+CGG | - | chr1.4:63565738-63565757 | None:intergenic | 35.0% |
| ! | TTGTTGTTATACAAGCTGGA+AGG | + | chr1.4:63566948-63566967 | MS.gene004956:intron | 35.0% |
| !!! | TATAATGGGCCTGTTTTGAT+TGG | + | chr1.4:63566165-63566184 | MS.gene004956:intron | 35.0% |
| !!! | TTTTGGTGTTGTAGTGAAGA+GGG | + | chr1.4:63565925-63565944 | MS.gene004956:intron | 35.0% |
| !!! | TTTTTGGTGTTGTAGTGAAG+AGG | + | chr1.4:63565924-63565943 | MS.gene004956:intron | 35.0% |
| AAATGCTAACAAGTGCCCTT+AGG | - | chr1.4:63568023-63568042 | None:intergenic | 40.0% | |
| AAGGCTCTCTATCAACTCAT+GGG | + | chr1.4:63567195-63567214 | MS.gene004956:CDS | 40.0% | |
| AATGCTAACAAGTGCCCTTA+GGG | - | chr1.4:63568022-63568041 | None:intergenic | 40.0% | |
| ATCAGCTCATGAGAAAGTGA+TGG | + | chr1.4:63566723-63566742 | MS.gene004956:intron | 40.0% | |
| ATCATCATCTTCGGAAGAAG+TGG | - | chr1.4:63565786-63565805 | None:intergenic | 40.0% | |
| ATGAAGCACGGATATGAACA+TGG | - | chr1.4:63566510-63566529 | None:intergenic | 40.0% | |
| CAGATCAAAACTGTTGGATG+AGG | + | chr1.4:63567464-63567483 | MS.gene004956:intron | 40.0% | |
| CTCATAAAATTGCTTGGGAG+AGG | - | chr1.4:63566993-63567012 | None:intergenic | 40.0% | |
| CTTTCTTAACAAGTGCCCTA+AGG | + | chr1.4:63568004-63568023 | MS.gene004956:intron | 40.0% | |
| GAAAGTGATGGTTACCAAAC+AGG | + | chr1.4:63566735-63566754 | MS.gene004956:intron | 40.0% | |
| GAAGAGCTAAGAGTCTTTCA+CGG | - | chr1.4:63565688-63565707 | None:intergenic | 40.0% | |
| GAAGCAAAATCAGTTAGCTG+AGG | + | chr1.4:63568289-63568308 | MS.gene004956:CDS | 40.0% | |
| GAAGCAGGATCTTCAAACTT+CGG | - | chr1.4:63566036-63566055 | None:intergenic | 40.0% | |
| GCTGAGGAAGATGATACAAA+TGG | + | chr1.4:63568305-63568324 | MS.gene004956:CDS | 40.0% | |
| GTAAGAGGCAATTCAGAGTA+AGG | - | chr1.4:63567061-63567080 | None:intergenic | 40.0% | |
| TCATCATCTTCGGAAGAAGT+GGG | - | chr1.4:63565785-63565804 | None:intergenic | 40.0% | |
| TCGTCTTGATTATTGGGTTC+AGG | - | chr1.4:63565743-63565762 | None:intergenic | 40.0% | |
| TGTTCCATGAATGTGGACTT+TGG | + | chr1.4:63568223-63568242 | MS.gene004956:intron | 40.0% | |
| ! | ATGAATGGTGAGTTGGGTAA+TGG | + | chr1.4:63567312-63567331 | MS.gene004956:intron | 40.0% |
| ! | TGAATGGTGAGTTGGGTAAT+GGG | + | chr1.4:63567313-63567332 | MS.gene004956:intron | 40.0% |
| !! | ACCTCTTTAGGTTTTTCCTC+AGG | - | chr1.4:63566069-63566088 | None:intergenic | 40.0% |
| !! | TTGCTCGATTGATTCGTCTT+CGG | - | chr1.4:63565651-63565670 | None:intergenic | 40.0% |
| ACAAGAGAAAGAGAGTAGGG+AGG | + | chr1.4:63567358-63567377 | MS.gene004956:intron | 45.0% | |
| ACGGATATGAACATGGACAC+TGG | - | chr1.4:63566503-63566522 | None:intergenic | 45.0% | |
| GAAGGCTCTCTATCAACTCA+TGG | + | chr1.4:63567194-63567213 | MS.gene004956:CDS | 45.0% | |
| GCCTGAGGAAAAACCTAAAG+AGG | + | chr1.4:63566065-63566084 | MS.gene004956:CDS | 45.0% | |
| GTCTCCAAAGTCCACATTCA+TGG | - | chr1.4:63568230-63568249 | None:intergenic | 45.0% | |
| TATGAAGCACGAACACTCCT+TGG | + | chr1.4:63566388-63566407 | MS.gene004956:intron | 45.0% | |
| ! | CTCACAGGTTCTTTTTCTGC+TGG | + | chr1.4:63568070-63568089 | MS.gene004956:intron | 45.0% |
| ! | GCACTTGTTAGCATTTCCCT+TGG | + | chr1.4:63568027-63568046 | MS.gene004956:intron | 45.0% |
| ! | TTAGGTTTTTCCTCAGGCTC+AGG | - | chr1.4:63566063-63566082 | None:intergenic | 45.0% |
| AGGTCCCAGTTGGGTTTCTT+GGG | - | chr1.4:63567126-63567145 | None:intergenic | 50.0% | |
| GCACGAACACTCCTTGGATT+AGG | + | chr1.4:63566394-63566413 | MS.gene004956:intron | 50.0% | |
| GCTTGAGAAGCGAACTCAGA+AGG | + | chr1.4:63567176-63567195 | MS.gene004956:CDS | 50.0% | |
| GTGTTGTAGTGAAGAGGGAG+AGG | + | chr1.4:63565930-63565949 | MS.gene004956:intron | 50.0% | |
| TCATCTTCGGAAGAAGTGGG+TGG | - | chr1.4:63565782-63565801 | None:intergenic | 50.0% | |
| TCTTCTGCACATCTCTTCGC+AGG | - | chr1.4:63567146-63567165 | None:intergenic | 50.0% | |
| TGCTCCCAAGAAACCCAACT+GGG | + | chr1.4:63567119-63567138 | MS.gene004956:CDS | 50.0% | |
| TTGCTCCCAAGAAACCCAAC+TGG | + | chr1.4:63567118-63567137 | MS.gene004956:CDS | 50.0% | |
| ! | GGGTTCAGGTTCGGAAGAAT+TGG | - | chr1.4:63565729-63565748 | None:intergenic | 50.0% |
| ! | TCAAACTTCGGAAGCACAGC+AGG | - | chr1.4:63566024-63566043 | None:intergenic | 50.0% |
| ATCTCTTCGCAGGTCCCAGT+TGG | - | chr1.4:63567136-63567155 | None:intergenic | 55.0% | |
| CAGGTCCCAGTTGGGTTTCT+TGG | - | chr1.4:63567127-63567146 | None:intergenic | 55.0% | |
| CATGGACACTGGACACGACA+CGG | - | chr1.4:63566492-63566511 | None:intergenic | 55.0% | |
| TCAGGCTCAGGAACAGAAGC+AGG | - | chr1.4:63566051-63566070 | None:intergenic | 55.0% | |
| TCTCTTCGCAGGTCCCAGTT+GGG | - | chr1.4:63567135-63567154 | None:intergenic | 55.0% | |
| TCTTCGGAAGAAGTGGGTGG+TGG | - | chr1.4:63565779-63565798 | None:intergenic | 55.0% | |
| TCTTTCACGGCGAGAAGCGA+CGG | - | chr1.4:63565675-63565694 | None:intergenic | 55.0% | |
| TGCTTCTGTTCCTGAGCCTG+AGG | + | chr1.4:63566050-63566069 | MS.gene004956:CDS | 55.0% | |
| ! | TCCTTGGATTAGGCGTGTCG+CGG | + | chr1.4:63566404-63566423 | MS.gene004956:intron | 55.0% |
| !! | GAAGAAGTGGGTGGTGGATG+TGG | - | chr1.4:63565773-63565792 | None:intergenic | 55.0% |
| ACCGCGACACGCCTAATCCA+AGG | - | chr1.4:63566408-63566427 | None:intergenic | 60.0% | |
| GATTAGGCGTGTCGCGGTGT+CGG | + | chr1.4:63566410-63566429 | MS.gene004956:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 63565641 | 63568340 | 63565641 | ID=MS.gene004956 |
| chr1.4 | mRNA | 63565641 | 63568340 | 63565641 | ID=MS.gene004956.t1;Parent=MS.gene004956 |
| chr1.4 | exon | 63565641 | 63565825 | 63565641 | ID=MS.gene004956.t1.exon1;Parent=MS.gene004956.t1 |
| chr1.4 | CDS | 63565641 | 63565825 | 63565641 | ID=cds.MS.gene004956.t1;Parent=MS.gene004956.t1 |
| chr1.4 | exon | 63565939 | 63566086 | 63565939 | ID=MS.gene004956.t1.exon2;Parent=MS.gene004956.t1 |
| chr1.4 | CDS | 63565939 | 63566086 | 63565939 | ID=cds.MS.gene004956.t1;Parent=MS.gene004956.t1 |
| chr1.4 | exon | 63567102 | 63567216 | 63567102 | ID=MS.gene004956.t1.exon3;Parent=MS.gene004956.t1 |
| chr1.4 | CDS | 63567102 | 63567216 | 63567102 | ID=cds.MS.gene004956.t1;Parent=MS.gene004956.t1 |
| chr1.4 | exon | 63568279 | 63568340 | 63568279 | ID=MS.gene004956.t1.exon4;Parent=MS.gene004956.t1 |
| chr1.4 | CDS | 63568279 | 63568340 | 63568279 | ID=cds.MS.gene004956.t1;Parent=MS.gene004956.t1 |
| Gene Sequence |
| Protein sequence |
