Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025434.t1 | XP_024630626.1 | 98.7 | 237 | 3 | 0 | 1 | 237 | 1 | 237 | 5.80E-129 | 470.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025434.t1 | Q3SX41 | 42.0 | 231 | 123 | 5 | 7 | 232 | 7 | 231 | 6.4e-44 | 179.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025434.t1 | A0A072TKA2 | 98.7 | 237 | 3 | 0 | 1 | 237 | 1 | 237 | 4.2e-129 | 470.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene025434 | MS.gene07484 | PPI |
| MS.gene025434 | MS.gene004956 | PPI |
| MS.gene025434 | MS.gene062186 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025434.t1 | MTR_0004s0480 | 98.547 | 344 | 5 | 0 | 1 | 344 | 1 | 344 | 0.0 | 693 |
| MS.gene025434.t1 | MTR_7g080320 | 39.130 | 115 | 56 | 4 | 1 | 111 | 1 | 105 | 2.76e-15 | 76.6 |
| MS.gene025434.t1 | MTR_7g080320 | 27.941 | 136 | 92 | 2 | 135 | 265 | 209 | 343 | 3.46e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025434.t1 | AT5G51410 | 78.889 | 270 | 56 | 1 | 1 | 269 | 1 | 270 | 7.15e-154 | 435 |
| MS.gene025434.t1 | AT5G51410 | 78.889 | 270 | 56 | 1 | 1 | 269 | 1 | 270 | 7.15e-154 | 435 |
| MS.gene025434.t1 | AT5G51410 | 78.889 | 270 | 56 | 1 | 1 | 269 | 1 | 270 | 7.15e-154 | 435 |
| MS.gene025434.t1 | AT5G51410 | 78.889 | 270 | 56 | 1 | 1 | 269 | 1 | 270 | 7.15e-154 | 435 |
| MS.gene025434.t1 | AT5G51410 | 78.889 | 270 | 56 | 1 | 1 | 269 | 1 | 270 | 7.15e-154 | 435 |
| MS.gene025434.t1 | AT3G03340 | 30.526 | 190 | 115 | 5 | 1 | 186 | 1 | 177 | 7.83e-17 | 81.3 |
| MS.gene025434.t1 | AT3G03340 | 35.220 | 159 | 78 | 7 | 116 | 263 | 198 | 342 | 1.48e-14 | 74.7 |
| MS.gene025434.t1 | AT3G03340 | 30.526 | 190 | 115 | 5 | 1 | 186 | 79 | 255 | 1.78e-16 | 80.5 |
| MS.gene025434.t1 | AT3G03340 | 35.220 | 159 | 78 | 7 | 116 | 263 | 276 | 420 | 2.61e-14 | 73.9 |
| MS.gene025434.t1 | AT5G17440 | 30.159 | 189 | 115 | 5 | 1 | 185 | 1 | 176 | 3.44e-16 | 79.3 |
| MS.gene025434.t1 | AT5G17440 | 33.846 | 130 | 71 | 3 | 117 | 241 | 199 | 318 | 2.84e-13 | 70.9 |
| MS.gene025434.t1 | AT5G17440 | 35.345 | 116 | 65 | 3 | 1 | 114 | 1 | 108 | 6.22e-16 | 77.4 |
| MS.gene025434.t1 | AT3G03340 | 30.526 | 190 | 115 | 5 | 1 | 186 | 1 | 177 | 7.33e-16 | 77.8 |
| MS.gene025434.t1 | AT3G03340 | 35.537 | 121 | 61 | 4 | 116 | 230 | 198 | 307 | 7.00e-13 | 68.9 |
Find 74 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTGTAGTTATGCTTAAT+AGG | 0.142913 | 4.2:-61213143 | None:intergenic |
| GCAAGATCGGCTTCAAATTT+AGG | 0.292888 | 4.2:-61212036 | None:intergenic |
| TTCTGTAGTTATGCTTAATA+GGG | 0.331026 | 4.2:-61213142 | None:intergenic |
| GGAAGTTTGTGGTTTCTATA+TGG | 0.332001 | 4.2:+61210182 | MS.gene025434:CDS |
| GGAGAAAATAAAGAACCTTC+TGG | 0.354149 | 4.2:+61212292 | MS.gene025434:CDS |
| GTTGAATCTCTTGGTGAAGC+TGG | 0.375956 | 4.2:+61212320 | MS.gene025434:CDS |
| GACGGAGTGATTCAAGTGAT+AGG | 0.379473 | 4.2:+61212931 | MS.gene025434:CDS |
| GCACGTATGCATCATGCCTT+GGG | 0.388877 | 4.2:-61212014 | None:intergenic |
| CTCGACGAACTCATGGGTTC+AGG | 0.418323 | 4.2:+61210024 | MS.gene025434:CDS |
| ATCTGAACAGTTGTCTGTCC+TGG | 0.430404 | 4.2:+61212268 | MS.gene025434:CDS |
| CTGGAACAAGTTGAATCTCT+TGG | 0.435647 | 4.2:+61212311 | MS.gene025434:CDS |
| TGGGACGATAAGGAAGTTTG+TGG | 0.435949 | 4.2:+61210171 | MS.gene025434:CDS |
| GGCACGTATGCATCATGCCT+TGG | 0.438040 | 4.2:-61212015 | None:intergenic |
| AGCTCTCCTCGACGAACTCA+TGG | 0.445844 | 4.2:+61210017 | MS.gene025434:CDS |
| CTCACAAAACTGAGCAAGAT+CGG | 0.453847 | 4.2:-61212049 | None:intergenic |
| GGTAATCGAGATCGAGGAAG+GGG | 0.456957 | 4.2:+61213047 | MS.gene025434:CDS |
| AGAAGTGAGTTGGGACGATA+AGG | 0.483654 | 4.2:+61210161 | MS.gene025434:CDS |
| ACTCGGATCGTGAAAGATCT+CGG | 0.487797 | 4.2:+61213009 | MS.gene025434:CDS |
| GCAGAGACAGGTACCACAAT+CGG | 0.490454 | 4.2:+61213105 | MS.gene025434:CDS |
| ATAATCACAGGTGATGGACT+TGG | 0.491646 | 4.2:+61212166 | MS.gene025434:intron |
| TCACTCCGTCTCTTTCTCTC+AGG | 0.493705 | 4.2:-61212918 | None:intergenic |
| AGAAGAGCGAAGAAAACAAA+AGG | 0.502735 | 4.2:+61212887 | MS.gene025434:CDS |
| GCTGTCAGTGGTGGCGGTGG+TGG | 0.503620 | 4.2:-61212239 | None:intergenic |
| GTCAACACGCGCAGTGATCT+CGG | 0.505201 | 4.2:+61210231 | MS.gene025434:CDS |
| GCGAAGAAAACAAAAGGAGC+AGG | 0.514193 | 4.2:+61212893 | MS.gene025434:CDS |
| CTCGGATCGTGAAAGATCTC+GGG | 0.514400 | 4.2:+61213010 | MS.gene025434:CDS |
| ATCGAGATAGGCAGCGTGAT+AGG | 0.514417 | 4.2:+61212973 | MS.gene025434:CDS |
| ATCTCTTGGTGAAGCTGGGA+AGG | 0.515528 | 4.2:+61212325 | MS.gene025434:CDS |
| ACGGAGTGATTCAAGTGATA+GGG | 0.516868 | 4.2:+61212932 | MS.gene025434:CDS |
| GGGTTACAAAGAAGTGAGTT+GGG | 0.517957 | 4.2:+61210152 | MS.gene025434:CDS |
| TTGAATCTCTTGGTGAAGCT+GGG | 0.520092 | 4.2:+61212321 | MS.gene025434:CDS |
| GGAAAGCAGCATGTTGGCTA+TGG | 0.524490 | 4.2:+61212694 | MS.gene025434:CDS |
| GGGGTTACAAAGAAGTGAGT+TGG | 0.527552 | 4.2:+61210151 | MS.gene025434:CDS |
| GAGGTAATCGAGATCGAGGA+AGG | 0.532185 | 4.2:+61213045 | MS.gene025434:CDS |
| GAGATTCAACTTGTTCCAGA+AGG | 0.534767 | 4.2:-61212307 | None:intergenic |
| AGCTGAAGCTCTTATGAGAA+AGG | 0.541211 | 4.2:+61212355 | MS.gene025434:CDS |
| CTTGACTGAGGAAGAAAGAA+GGG | 0.550258 | 4.2:+61210131 | MS.gene025434:CDS |
| ACTTGACTGAGGAAGAAAGA+AGG | 0.553452 | 4.2:+61210130 | MS.gene025434:CDS |
| GATTGCTAAGGAGAAGGCTA+AGG | 0.554953 | 4.2:+61212833 | MS.gene025434:intron |
| TCAGCTGTCAGTGGTGGCGG+TGG | 0.557872 | 4.2:-61212242 | None:intergenic |
| GGAAGAAGAAAGATTGACTC+GGG | 0.558620 | 4.2:+61212854 | MS.gene025434:CDS |
| AGAACTCAGTCTCATGTCGC+AGG | 0.559633 | 4.2:+61212673 | MS.gene025434:CDS |
| GAAAGATCTCGGGAATATGA+AGG | 0.563627 | 4.2:+61213020 | MS.gene025434:CDS |
| GCAGCATGTTGGCTATGGTA+TGG | 0.570060 | 4.2:+61212699 | MS.gene025434:CDS |
| TCTCGGGAATATGAAGGTAG+AGG | 0.580782 | 4.2:+61213026 | MS.gene025434:CDS |
| CTATTAAGCATAACTACAGA+AGG | 0.587485 | 4.2:+61213144 | MS.gene025434:CDS |
| GCTCTCCTCGACGAACTCAT+GGG | 0.594522 | 4.2:+61210018 | MS.gene025434:CDS |
| AACGTGATCTGCTCCGATTG+TGG | 0.597216 | 4.2:-61213118 | None:intergenic |
| TGACTTCATAAATGAATACA+AGG | 0.598021 | 4.2:+61212726 | MS.gene025434:CDS |
| AGGAAGAAGAAAGATTGACT+CGG | 0.603218 | 4.2:+61212853 | MS.gene025434:CDS |
| GGTAGAGGTAATCGAGATCG+AGG | 0.605352 | 4.2:+61213041 | MS.gene025434:CDS |
| GTCGCAGGAAAGCAGCATGT+TGG | 0.607800 | 4.2:+61212688 | MS.gene025434:CDS |
| AGGTAATCGAGATCGAGGAA+GGG | 0.610688 | 4.2:+61213046 | MS.gene025434:CDS |
| AATGCTTCAGGAGAAGAAGA+TGG | 0.611727 | 4.2:+61212600 | MS.gene025434:CDS |
| ATCGTGATAAAGATCGAGAT+AGG | 0.617765 | 4.2:+61212961 | MS.gene025434:CDS |
| TCTGTAGTTATGCTTAATAG+GGG | 0.619225 | 4.2:-61213141 | None:intergenic |
| GGTATGTGGTTCGTTTCTCG+TGG | 0.623915 | 4.2:+61212633 | MS.gene025434:CDS |
| ATGGCACTCTGTGAGGTATG+TGG | 0.625178 | 4.2:+61212619 | MS.gene025434:CDS |
| GGAGACACTTAATACTGAGA+AGG | 0.634366 | 4.2:+61212543 | MS.gene025434:CDS |
| TGAACAGTTGTCTGTCCTGG+AGG | 0.636803 | 4.2:+61212271 | MS.gene025434:CDS |
| AGGATCCTGAGAGAAAGAGA+CGG | 0.640354 | 4.2:+61212913 | MS.gene025434:CDS |
| GTGTTGACGAAGAGATCGTG+AGG | 0.645071 | 4.2:-61210216 | None:intergenic |
| ACGAGAACGTCTTAATCAAG+AGG | 0.649224 | 4.2:+61212208 | MS.gene025434:CDS |
| ATGGTTTCTAGGTTGAGGAA+CGG | 0.651338 | 4.2:+61213071 | MS.gene025434:CDS |
| GAAGAAGATGGCACTCTGTG+AGG | 0.661944 | 4.2:+61212612 | MS.gene025434:CDS |
| AGAACGTCTTAATCAAGAGG+TGG | 0.666877 | 4.2:+61212211 | MS.gene025434:CDS |
| TTCAGCTCGAAACTTGACTG+AGG | 0.672653 | 4.2:+61210119 | MS.gene025434:intron |
| TTGACTGAGGAAGAAAGAAG+GGG | 0.676867 | 4.2:+61210132 | MS.gene025434:CDS |
| CACGTATGCATCATGCCTTG+GGG | 0.690040 | 4.2:-61212013 | None:intergenic |
| GTAATCGAGATCGAGGAAGG+GGG | 0.692537 | 4.2:+61213048 | MS.gene025434:CDS |
| TAGGTACAGAGATAGAGACT+CGG | 0.703615 | 4.2:+61212992 | MS.gene025434:CDS |
| TGTTGACGAAGAGATCGTGA+GGG | 0.727468 | 4.2:-61210215 | None:intergenic |
| CTGAACCCATGAGTTCGTCG+AGG | 0.733418 | 4.2:-61210023 | None:intergenic |
| TTGGATAGAAGAGTAAAACG+TGG | 0.775215 | 4.2:+61212185 | MS.gene025434:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTATATTAAATATA+TGG | + | chr4.2:61211017-61211036 | MS.gene025434:intron | 0.0% |
| !! | AATTATTTATAAGTATGTTA+AGG | + | chr4.2:61210432-61210451 | MS.gene025434:intron | 10.0% |
| !! | ATAAATGTATAGATTAATTT+AGG | - | chr4.2:61212762-61212781 | None:intergenic | 10.0% |
| !! | AAAGGTTAACAAAAAAAATT+AGG | - | chr4.2:61211603-61211622 | None:intergenic | 15.0% |
| !! | AAGGTTAACAAAAAAAATTA+GGG | - | chr4.2:61211602-61211621 | None:intergenic | 15.0% |
| !! | ATTGACATTCAAATTTAATA+TGG | - | chr4.2:61211640-61211659 | None:intergenic | 15.0% |
| !! | GTTCAAAAAATTATTAATCT+TGG | + | chr4.2:61211072-61211091 | MS.gene025434:intron | 15.0% |
| !! | TTGACATTCAAATTTAATAT+GGG | - | chr4.2:61211639-61211658 | None:intergenic | 15.0% |
| !! | AAAAAATTAGGGTATACTTA+CGG | - | chr4.2:61211591-61211610 | None:intergenic | 20.0% |
| !! | AATGAAATCATTCTTGAAAT+TGG | + | chr4.2:61212784-61212803 | MS.gene025434:intron | 20.0% |
| !! | GAAATCAAAAAACAATTTAC+TGG | - | chr4.2:61211924-61211943 | None:intergenic | 20.0% |
| !!! | AAAGGATAAGAAACTTTTAA+AGG | - | chr4.2:61211738-61211757 | None:intergenic | 20.0% |
| !!! | AAGGATAAGAAACTTTTAAA+GGG | - | chr4.2:61211737-61211756 | None:intergenic | 20.0% |
| !!! | ATTAAATAGTTTGAGATTTC+TGG | + | chr4.2:61211395-61211414 | MS.gene025434:intron | 20.0% |
| !!! | ATTAACACTTTTTCATTTTG+AGG | - | chr4.2:61212583-61212602 | None:intergenic | 20.0% |
| !!! | GCATTTTATGCTTTATTTAT+CGG | - | chr4.2:61211902-61211921 | None:intergenic | 20.0% |
| ! | AAATGTTACAAATGAGAATG+AGG | + | chr4.2:61210331-61210350 | MS.gene025434:intron | 25.0% |
| ! | AATAGTATACACAAGGAAAA+GGG | - | chr4.2:61212400-61212419 | None:intergenic | 25.0% |
| ! | AATCATCAATAGTATACACA+AGG | - | chr4.2:61212407-61212426 | None:intergenic | 25.0% |
| ! | TGACAAAGTAAAATATGCAA+AGG | - | chr4.2:61211756-61211775 | None:intergenic | 25.0% |
| ! | TGACTTCATAAATGAATACA+AGG | + | chr4.2:61212726-61212745 | MS.gene025434:CDS | 25.0% |
| ! | TTCTGTAGTTATGCTTAATA+GGG | - | chr4.2:61213145-61213164 | None:intergenic | 25.0% |
| ! | TTTCAAATTATTAGCTGTGT+CGG | - | chr4.2:61210533-61210552 | None:intergenic | 25.0% |
| !! | ATATTTTACTTTGTCATGCA+TGG | + | chr4.2:61211760-61211779 | MS.gene025434:intron | 25.0% |
| !! | TAAGATATTTAGAGTTGAAG+AGG | - | chr4.2:61211232-61211251 | None:intergenic | 25.0% |
| !! | TTTTTAATGTAGAATGAGGA+TGG | - | chr4.2:61212100-61212119 | None:intergenic | 25.0% |
| !!! | AATTTCATGACTTGTTCAAT+TGG | + | chr4.2:61211657-61211676 | MS.gene025434:intron | 25.0% |
| !!! | ACTGTTTTTAATGTAGAATG+AGG | - | chr4.2:61212104-61212123 | None:intergenic | 25.0% |
| !!! | ATTTCATGACTTGTTCAATT+GGG | + | chr4.2:61211658-61211677 | MS.gene025434:intron | 25.0% |
| !!! | CTCGTGAATTTATTTTTTTG+CGG | + | chr4.2:61212502-61212521 | MS.gene025434:intron | 25.0% |
| !!! | TCGTGAATTTATTTTTTTGC+GGG | + | chr4.2:61212503-61212522 | MS.gene025434:intron | 25.0% |
| !!! | TGCAATGTTTTTGAAAATCA+CGG | - | chr4.2:61210772-61210791 | None:intergenic | 25.0% |
| !!! | TTTGACTTTTTGTTCGTATT+TGG | + | chr4.2:61210947-61210966 | MS.gene025434:intron | 25.0% |
| !!! | TTTTTGTTCGTATTTGGAAT+AGG | + | chr4.2:61210953-61210972 | MS.gene025434:intron | 25.0% |
| AAACTCAGTTACACATTTAC+GGG | - | chr4.2:61211946-61211965 | None:intergenic | 30.0% | |
| AACATATGCCTCTGATAATT+TGG | + | chr4.2:61211791-61211810 | MS.gene025434:intron | 30.0% | |
| AACTTATGAACTATGAAGCA+TGG | + | chr4.2:61210472-61210491 | MS.gene025434:intron | 30.0% | |
| AAGTTCATTCTGTTTCATGT+AGG | - | chr4.2:61211188-61211207 | None:intergenic | 30.0% | |
| ACAAGTTCATTTCTACGATT+GGG | - | chr4.2:61212447-61212466 | None:intergenic | 30.0% | |
| ACGAACAAAAAGTCAAAGAT+TGG | - | chr4.2:61210944-61210963 | None:intergenic | 30.0% | |
| CAATAGTATACACAAGGAAA+AGG | - | chr4.2:61212401-61212420 | None:intergenic | 30.0% | |
| CTAAAATAAGCCAATCCAAA+CGG | - | chr4.2:61210370-61210389 | None:intergenic | 30.0% | |
| CTATTAAGCATAACTACAGA+AGG | + | chr4.2:61213144-61213163 | MS.gene025434:CDS | 30.0% | |
| CTTATTAACTGTGATAGCTT+TGG | + | chr4.2:61211248-61211267 | MS.gene025434:intron | 30.0% | |
| CTTCTGTAGTTATGCTTAAT+AGG | - | chr4.2:61213146-61213165 | None:intergenic | 30.0% | |
| GAAACTCAGTTACACATTTA+CGG | - | chr4.2:61211947-61211966 | None:intergenic | 30.0% | |
| TAATACAGTAATTGACACCT+AGG | - | chr4.2:61211157-61211176 | None:intergenic | 30.0% | |
| TATTCATAAGCTATGAAGCA+CGG | - | chr4.2:61210641-61210660 | None:intergenic | 30.0% | |
| TCTGTAGTTATGCTTAATAG+GGG | - | chr4.2:61213144-61213163 | None:intergenic | 30.0% | |
| TGAATTGACACAAAATTCCA+TGG | - | chr4.2:61210815-61210834 | None:intergenic | 30.0% | |
| TTCATAAGCTCAATCTAAAC+AGG | + | chr4.2:61210725-61210744 | MS.gene025434:intron | 30.0% | |
| ! | ATCTTCTTTTCAGATTGCTA+AGG | + | chr4.2:61212821-61212840 | MS.gene025434:intron | 30.0% |
| ! | CTTTATTTATCGGCATATCA+TGG | - | chr4.2:61211892-61211911 | None:intergenic | 30.0% |
| !! | CTTACTTTTCTTTCAACTTC+GGG | - | chr4.2:61211340-61211359 | None:intergenic | 30.0% |
| !! | CTTTTAAAGGGAAGCAATAT+TGG | - | chr4.2:61211725-61211744 | None:intergenic | 30.0% |
| !! | GCAATGTTTTTGAAAATCAC+GGG | - | chr4.2:61210771-61210790 | None:intergenic | 30.0% |
| !! | GCTTACTTTTCTTTCAACTT+CGG | - | chr4.2:61211341-61211360 | None:intergenic | 30.0% |
| !! | TGAAAAAGTGTTAATGCTTC+AGG | + | chr4.2:61212588-61212607 | MS.gene025434:CDS | 30.0% |
| !! | TGTTTTCTGGTAATAATCAC+AGG | + | chr4.2:61212154-61212173 | MS.gene025434:intron | 30.0% |
| !! | TTAGTTTTCAGACAGTAATC+AGG | - | chr4.2:61211463-61211482 | None:intergenic | 30.0% |
| !! | TTTCATGACTTGTTCAATTG+GGG | + | chr4.2:61211659-61211678 | MS.gene025434:intron | 30.0% |
| !!! | CGTGAATTTATTTTTTTGCG+GGG | + | chr4.2:61212504-61212523 | MS.gene025434:intron | 30.0% |
| AAAGGGAAGCAATATTGGTA+CGG | - | chr4.2:61211720-61211739 | None:intergenic | 35.0% | |
| AGAAGAGCGAAGAAAACAAA+AGG | + | chr4.2:61212887-61212906 | MS.gene025434:CDS | 35.0% | |
| AGGAAGAAGAAAGATTGACT+CGG | + | chr4.2:61212853-61212872 | MS.gene025434:CDS | 35.0% | |
| ATCGTGATAAAGATCGAGAT+AGG | + | chr4.2:61212961-61212980 | MS.gene025434:CDS | 35.0% | |
| CAAGTTCATTTCTACGATTG+GGG | - | chr4.2:61212446-61212465 | None:intergenic | 35.0% | |
| CACAAGTTCATTTCTACGAT+TGG | - | chr4.2:61212448-61212467 | None:intergenic | 35.0% | |
| GGAAGTTTGTGGTTTCTATA+TGG | + | chr4.2:61210182-61210201 | MS.gene025434:CDS | 35.0% | |
| GGAGAAAATAAAGAACCTTC+TGG | + | chr4.2:61212292-61212311 | MS.gene025434:CDS | 35.0% | |
| GTTACAAATGAGAATGAGGA+AGG | + | chr4.2:61210335-61210354 | MS.gene025434:intron | 35.0% | |
| TACGCATACCAAATTATCAG+AGG | - | chr4.2:61211802-61211821 | None:intergenic | 35.0% | |
| TTGGATAGAAGAGTAAAACG+TGG | + | chr4.2:61212185-61212204 | MS.gene025434:CDS | 35.0% | |
| ! | AACTTCGGGTCATGTATTTT+CGG | - | chr4.2:61211326-61211345 | None:intergenic | 35.0% |
| ! | CTGATGTTCTTCATGTTTTC+TGG | + | chr4.2:61212141-61212160 | MS.gene025434:intron | 35.0% |
| ! | TTTTCAGATTGCTAAGGAGA+AGG | + | chr4.2:61212827-61212846 | MS.gene025434:intron | 35.0% |
| !! | CAGTTTTGTGAGAAATTGGT+AGG | + | chr4.2:61212060-61212079 | MS.gene025434:intron | 35.0% |
| !! | TGCTCAGTTTTGTGAGAAAT+TGG | + | chr4.2:61212056-61212075 | MS.gene025434:CDS | 35.0% |
| !! | TTAACTGTGATAGCTTTGGT+TGG | + | chr4.2:61211252-61211271 | MS.gene025434:intron | 35.0% |
| AATGCTTCAGGAGAAGAAGA+TGG | + | chr4.2:61212600-61212619 | MS.gene025434:CDS | 40.0% | |
| ACGAGAACGTCTTAATCAAG+AGG | + | chr4.2:61212208-61212227 | MS.gene025434:CDS | 40.0% | |
| ACGGAGTGATTCAAGTGATA+GGG | + | chr4.2:61212932-61212951 | MS.gene025434:CDS | 40.0% | |
| ACTTGACTGAGGAAGAAAGA+AGG | + | chr4.2:61210130-61210149 | MS.gene025434:CDS | 40.0% | |
| AGAACGTCTTAATCAAGAGG+TGG | + | chr4.2:61212211-61212230 | MS.gene025434:CDS | 40.0% | |
| AGCTGAAGCTCTTATGAGAA+AGG | + | chr4.2:61212355-61212374 | MS.gene025434:CDS | 40.0% | |
| AGGTTGAGGAACGGAAAAAA+TGG | + | chr4.2:61213080-61213099 | MS.gene025434:CDS | 40.0% | |
| ATGAGAATGAGGAAGGACTT+TGG | + | chr4.2:61210342-61210361 | MS.gene025434:intron | 40.0% | |
| ATTCACGAGAATCTCAGTCA+CGG | - | chr4.2:61212491-61212510 | None:intergenic | 40.0% | |
| CTCACAAAACTGAGCAAGAT+CGG | - | chr4.2:61212052-61212071 | None:intergenic | 40.0% | |
| CTGGTAATAATCACAGGTGA+TGG | + | chr4.2:61212160-61212179 | MS.gene025434:intron | 40.0% | |
| CTTGACTGAGGAAGAAAGAA+GGG | + | chr4.2:61210131-61210150 | MS.gene025434:CDS | 40.0% | |
| GAAAAAATGGAAGCAGAGAC+AGG | + | chr4.2:61213093-61213112 | MS.gene025434:CDS | 40.0% | |
| GAAAGATCTCGGGAATATGA+AGG | + | chr4.2:61213020-61213039 | MS.gene025434:CDS | 40.0% | |
| GAACATCAGCATACAAGCAA+AGG | - | chr4.2:61212130-61212149 | None:intergenic | 40.0% | |
| GGAGACACTTAATACTGAGA+AGG | + | chr4.2:61212543-61212562 | MS.gene025434:CDS | 40.0% | |
| GGGTTACAAAGAAGTGAGTT+GGG | + | chr4.2:61210152-61210171 | MS.gene025434:CDS | 40.0% | |
| GTAGTGTGATATTGCATCCA+TGG | + | chr4.2:61210795-61210814 | MS.gene025434:intron | 40.0% | |
| GTTAAGCTATCTTAGTGCTG+TGG | + | chr4.2:61211551-61211570 | MS.gene025434:intron | 40.0% | |
| TAACGTGTTTAAACCGATGC+AGG | + | chr4.2:61211293-61211312 | MS.gene025434:intron | 40.0% | |
| TACAAGTGTTAGTGTCGTGT+CGG | + | chr4.2:61210575-61210594 | MS.gene025434:intron | 40.0% | |
| TAGGTACAGAGATAGAGACT+CGG | + | chr4.2:61212992-61213011 | MS.gene025434:CDS | 40.0% | |
| TATACACAAGGAAAAGGGTG+TGG | - | chr4.2:61212395-61212414 | None:intergenic | 40.0% | |
| TGAGAATGAGGAAGGACTTT+GGG | + | chr4.2:61210343-61210362 | MS.gene025434:intron | 40.0% | |
| TTGAATCTCTTGGTGAAGCT+GGG | + | chr4.2:61212321-61212340 | MS.gene025434:CDS | 40.0% | |
| TTGACTGAGGAAGAAAGAAG+GGG | + | chr4.2:61210132-61210151 | MS.gene025434:CDS | 40.0% | |
| ! | ACTTCGGGTCATGTATTTTC+GGG | - | chr4.2:61211325-61211344 | None:intergenic | 40.0% |
| ! | ATGGTTTCTAGGTTGAGGAA+CGG | + | chr4.2:61213071-61213090 | MS.gene025434:CDS | 40.0% |
| ! | CAAAAAGTCAAAGATTGGCC+AGG | - | chr4.2:61210939-61210958 | None:intergenic | 40.0% |
| ! | CTGGAACAAGTTGAATCTCT+TGG | + | chr4.2:61212311-61212330 | MS.gene025434:CDS | 40.0% |
| ! | GAGATTCAACTTGTTCCAGA+AGG | - | chr4.2:61212310-61212329 | None:intergenic | 40.0% |
| ! | GCAAGATCGGCTTCAAATTT+AGG | - | chr4.2:61212039-61212058 | None:intergenic | 40.0% |
| ! | GGAAGAAGAAAGATTGACTC+GGG | + | chr4.2:61212854-61212873 | MS.gene025434:CDS | 40.0% |
| ! | GTGTTGCTCTTCTATCTATG+TGG | + | chr4.2:61211529-61211548 | MS.gene025434:intron | 40.0% |
| !! | AAGATTGACTCGGGAAAAAG+AGG | + | chr4.2:61212863-61212882 | MS.gene025434:CDS | 40.0% |
| !! | ATAATCACAGGTGATGGACT+TGG | + | chr4.2:61212166-61212185 | MS.gene025434:intron | 40.0% |
| !! | TCAGATTTTTCAGCTGTCAG+TGG | - | chr4.2:61212254-61212273 | None:intergenic | 40.0% |
| !! | TTGCGGGGTATTTTTCTTTC+AGG | + | chr4.2:61212519-61212538 | MS.gene025434:intron | 40.0% |
| !!! | GGTTCTTTATTTTCTCCTCC+AGG | - | chr4.2:61212289-61212308 | None:intergenic | 40.0% |
| !!! | TCAGTTTTGAGAATTCCCCA+AGG | + | chr4.2:61211998-61212017 | MS.gene025434:intron | 40.0% |
| ACAATAGAGCAACCATGTGC+AGG | - | chr4.2:61211842-61211861 | None:intergenic | 45.0% | |
| ACTCGGATCGTGAAAGATCT+CGG | + | chr4.2:61213009-61213028 | MS.gene025434:CDS | 45.0% | |
| AGGATCCTGAGAGAAAGAGA+CGG | + | chr4.2:61212913-61212932 | MS.gene025434:CDS | 45.0% | |
| AGGTAATCGAGATCGAGGAA+GGG | + | chr4.2:61213046-61213065 | MS.gene025434:CDS | 45.0% | |
| ATCTGAACAGTTGTCTGTCC+TGG | + | chr4.2:61212268-61212287 | MS.gene025434:CDS | 45.0% | |
| ATGGGTAGCATACGCTCAAA+AGG | - | chr4.2:61211621-61211640 | None:intergenic | 45.0% | |
| GAATGAGGATGGCAACAGAT+AGG | - | chr4.2:61212089-61212108 | None:intergenic | 45.0% | |
| GACGGAGTGATTCAAGTGAT+AGG | + | chr4.2:61212931-61212950 | MS.gene025434:CDS | 45.0% | |
| GATTAGGTGTGTCCTGTAGT+CGG | - | chr4.2:61210608-61210627 | None:intergenic | 45.0% | |
| GATTGCTAAGGAGAAGGCTA+AGG | + | chr4.2:61212833-61212852 | MS.gene025434:intron | 45.0% | |
| GCGAAGAAAACAAAAGGAGC+AGG | + | chr4.2:61212893-61212912 | MS.gene025434:CDS | 45.0% | |
| GGGGTTACAAAGAAGTGAGT+TGG | + | chr4.2:61210151-61210170 | MS.gene025434:CDS | 45.0% | |
| GTTGAATCTCTTGGTGAAGC+TGG | + | chr4.2:61212320-61212339 | MS.gene025434:CDS | 45.0% | |
| TATGAAGCACGGATACTCCT+CGG | - | chr4.2:61210630-61210649 | None:intergenic | 45.0% | |
| TCAACCTAGACAGTCAATCC+TGG | + | chr4.2:61210852-61210871 | MS.gene025434:intron | 45.0% | |
| TCTCGGGAATATGAAGGTAG+AGG | + | chr4.2:61213026-61213045 | MS.gene025434:CDS | 45.0% | |
| TGAAGCATGGATACAGACAC+TGG | + | chr4.2:61210485-61210504 | MS.gene025434:intron | 45.0% | |
| TGGGACGATAAGGAAGTTTG+TGG | + | chr4.2:61210171-61210190 | MS.gene025434:CDS | 45.0% | |
| TGTTGACGAAGAGATCGTGA+GGG | - | chr4.2:61210218-61210237 | None:intergenic | 45.0% | |
| TTCAGCTCGAAACTTGACTG+AGG | + | chr4.2:61210119-61210138 | MS.gene025434:intron | 45.0% | |
| TTGGTACGGTGCACTTCTAA+TGG | - | chr4.2:61211706-61211725 | None:intergenic | 45.0% | |
| TTTGCCAGGATTGACTGTCT+AGG | - | chr4.2:61210859-61210878 | None:intergenic | 45.0% | |
| ! | AGAAGTGAGTTGGGACGATA+AGG | + | chr4.2:61210161-61210180 | MS.gene025434:CDS | 45.0% |
| ! | CGATCGATTTATCGAGTGAG+TGG | - | chr4.2:61210078-61210097 | None:intergenic | 45.0% |
| ! | GACTTGTTCAATTGGGGCTA+TGG | + | chr4.2:61211665-61211684 | MS.gene025434:intron | 45.0% |
| ! | GGGCTGCAGTTGATTTCAAA+GGG | - | chr4.2:61210751-61210770 | None:intergenic | 45.0% |
| !! | CGGGGTATTTTTCTTTCAGG+TGG | + | chr4.2:61212522-61212541 | MS.gene025434:intron | 45.0% |
| !! | GATTTTTCAGCTGTCAGTGG+TGG | - | chr4.2:61212251-61212270 | None:intergenic | 45.0% |
| AACGTGATCTGCTCCGATTG+TGG | - | chr4.2:61213121-61213140 | None:intergenic | 50.0% | |
| AGAACTCAGTCTCATGTCGC+AGG | + | chr4.2:61212673-61212692 | MS.gene025434:CDS | 50.0% | |
| AGGTAGTCAATCCCGGATAG+CGG | - | chr4.2:61211137-61211156 | None:intergenic | 50.0% | |
| ATCGAGATAGGCAGCGTGAT+AGG | + | chr4.2:61212973-61212992 | MS.gene025434:CDS | 50.0% | |
| ATCTCTTGGTGAAGCTGGGA+AGG | + | chr4.2:61212325-61212344 | MS.gene025434:CDS | 50.0% | |
| ATGGCACTCTGTGAGGTATG+TGG | + | chr4.2:61212619-61212638 | MS.gene025434:CDS | 50.0% | |
| CACGTATGCATCATGCCTTG+GGG | - | chr4.2:61212016-61212035 | None:intergenic | 50.0% | |
| CCTGGCAAATCCCAAAGTAG+CGG | + | chr4.2:61210870-61210889 | MS.gene025434:intron | 50.0% | |
| CTATCCGGGATTGACTACCT+AGG | + | chr4.2:61211137-61211156 | MS.gene025434:intron | 50.0% | |
| CTCGGATCGTGAAAGATCTC+GGG | + | chr4.2:61213010-61213029 | MS.gene025434:CDS | 50.0% | |
| GAAGAAGATGGCACTCTGTG+AGG | + | chr4.2:61212612-61212631 | MS.gene025434:CDS | 50.0% | |
| GACACCTAGGTAGTCAATCC+CGG | - | chr4.2:61211144-61211163 | None:intergenic | 50.0% | |
| GACTTTGGGTCCGTTTGGAT+TGG | + | chr4.2:61210357-61210376 | MS.gene025434:intron | 50.0% | |
| GAGGTAATCGAGATCGAGGA+AGG | + | chr4.2:61213045-61213064 | MS.gene025434:CDS | 50.0% | |
| GCACGTATGCATCATGCCTT+GGG | - | chr4.2:61212017-61212036 | None:intergenic | 50.0% | |
| GCAGAGACAGGTACCACAAT+CGG | + | chr4.2:61213105-61213124 | MS.gene025434:CDS | 50.0% | |
| GGTAATCGAGATCGAGGAAG+GGG | + | chr4.2:61213047-61213066 | MS.gene025434:CDS | 50.0% | |
| GGTAGAGGTAATCGAGATCG+AGG | + | chr4.2:61213041-61213060 | MS.gene025434:CDS | 50.0% | |
| GGTATGTGGTTCGTTTCTCG+TGG | + | chr4.2:61212633-61212652 | MS.gene025434:CDS | 50.0% | |
| GTAATCGAGATCGAGGAAGG+GGG | + | chr4.2:61213048-61213067 | MS.gene025434:CDS | 50.0% | |
| TACAGGACACACCTAATCCG+AGG | + | chr4.2:61210610-61210629 | MS.gene025434:intron | 50.0% | |
| TCACTCCGTCTCTTTCTCTC+AGG | - | chr4.2:61212921-61212940 | None:intergenic | 50.0% | |
| TGAACAGTTGTCTGTCCTGG+AGG | + | chr4.2:61212271-61212290 | MS.gene025434:CDS | 50.0% | |
| TGAGGATGGCAACAGATAGG+TGG | - | chr4.2:61212086-61212105 | None:intergenic | 50.0% | |
| ! | CGGGCTGCAGTTGATTTCAA+AGG | - | chr4.2:61210752-61210771 | None:intergenic | 50.0% |
| ! | GCAGCATGTTGGCTATGGTA+TGG | + | chr4.2:61212699-61212718 | MS.gene025434:CDS | 50.0% |
| ! | GGAAAGCAGCATGTTGGCTA+TGG | + | chr4.2:61212694-61212713 | MS.gene025434:CDS | 50.0% |
| ! | GTGTTGACGAAGAGATCGTG+AGG | - | chr4.2:61210219-61210238 | None:intergenic | 50.0% |
| ! | TCAGGCTGATCCGCTACTTT+GGG | - | chr4.2:61210883-61210902 | None:intergenic | 50.0% |
| ! | TTTTCAGCTGTCAGTGGTGG+CGG | - | chr4.2:61212248-61212267 | None:intergenic | 50.0% |
| !! | AAAGTAGCGGATCAGCCTGA+GGG | + | chr4.2:61210883-61210902 | MS.gene025434:intron | 50.0% |
| AGAGGATTTCGTCGCGATCC+TGG | + | chr4.2:61210918-61210937 | MS.gene025434:intron | 55.0% | |
| AGCAGTCGACCCCAAAAGTG+GGG | - | chr4.2:61211109-61211128 | None:intergenic | 55.0% | |
| AGCTCTCCTCGACGAACTCA+TGG | + | chr4.2:61210017-61210036 | MS.gene025434:CDS | 55.0% | |
| CAGCCTGAGGGAAATTGCGA+CGG | + | chr4.2:61210895-61210914 | MS.gene025434:intron | 55.0% | |
| CTCAGGCTGATCCGCTACTT+TGG | - | chr4.2:61210884-61210903 | None:intergenic | 55.0% | |
| CTCGACGAACTCATGGGTTC+AGG | + | chr4.2:61210024-61210043 | MS.gene025434:CDS | 55.0% | |
| CTGAACCCATGAGTTCGTCG+AGG | - | chr4.2:61210026-61210045 | None:intergenic | 55.0% | |
| GAGCAGTCGACCCCAAAAGT+GGG | - | chr4.2:61211110-61211129 | None:intergenic | 55.0% | |
| GAGGAAGGGGGATGGTTTCT+AGG | + | chr4.2:61213060-61213079 | MS.gene025434:CDS | 55.0% | |
| GCACGGATACTCCTCGGATT+AGG | - | chr4.2:61210624-61210643 | None:intergenic | 55.0% | |
| GCTCTCCTCGACGAACTCAT+GGG | + | chr4.2:61210018-61210037 | MS.gene025434:CDS | 55.0% | |
| GGAAGGACTTTGGGTCCGTT+TGG | + | chr4.2:61210352-61210371 | MS.gene025434:intron | 55.0% | |
| GGCACGTATGCATCATGCCT+TGG | - | chr4.2:61212018-61212037 | None:intergenic | 55.0% | |
| GTCAACACGCGCAGTGATCT+CGG | + | chr4.2:61210231-61210250 | MS.gene025434:CDS | 55.0% | |
| GTCGCAGGAAAGCAGCATGT+TGG | + | chr4.2:61212688-61212707 | MS.gene025434:CDS | 55.0% | |
| TAGAGCAACCATGTGCAGGC+AGG | - | chr4.2:61211838-61211857 | None:intergenic | 55.0% | |
| TCTCCGTCGCAATTTCCCTC+AGG | - | chr4.2:61210901-61210920 | None:intergenic | 55.0% | |
| TGAGGGAAATTGCGACGGAG+AGG | + | chr4.2:61210900-61210919 | MS.gene025434:intron | 55.0% | |
| TTTCGGGCAAGCTCCTGCAT+CGG | - | chr4.2:61211309-61211328 | None:intergenic | 55.0% | |
| ! | AGATCCCGCTACCCCACTTT+TGG | + | chr4.2:61211095-61211114 | MS.gene025434:intron | 55.0% |
| ! | GGGGGATGGTTTCTAGGTTG+AGG | + | chr4.2:61213066-61213085 | MS.gene025434:CDS | 55.0% |
| !! | ATCCCGCTACCCCACTTTTG+GGG | + | chr4.2:61211097-61211116 | MS.gene025434:intron | 55.0% |
| !! | CAAAGTAGCGGATCAGCCTG+AGG | + | chr4.2:61210882-61210901 | MS.gene025434:intron | 55.0% |
| !! | CCGCTACTTTGGGATTTGCC+AGG | - | chr4.2:61210873-61210892 | None:intergenic | 55.0% |
| !! | GATCCCGCTACCCCACTTTT+GGG | + | chr4.2:61211096-61211115 | MS.gene025434:intron | 55.0% |
| ATGTGCAGGCAGGCAACTGC+AGG | - | chr4.2:61211828-61211847 | None:intergenic | 60.0% | |
| CGACCCCAAAAGTGGGGTAG+CGG | - | chr4.2:61211103-61211122 | None:intergenic | 60.0% | |
| GACCCCAAAAGTGGGGTAGC+GGG | - | chr4.2:61211102-61211121 | None:intergenic | 60.0% | |
| GGAGCAGTCGACCCCAAAAG+TGG | - | chr4.2:61211111-61211130 | None:intergenic | 60.0% | |
| GTCGGTGCATGTCCGACTAC+AGG | + | chr4.2:61210593-61210612 | MS.gene025434:intron | 60.0% | |
| TCGAGATCGAGGAAGGGGGA+TGG | + | chr4.2:61213052-61213071 | MS.gene025434:CDS | 60.0% | |
| TGCAGTTGCCTGCCTGCACA+TGG | + | chr4.2:61211827-61211846 | MS.gene025434:intron | 60.0% | |
| ! | GTCAATCCCGGATAGCGGCG+CGG | - | chr4.2:61211132-61211151 | None:intergenic | 65.0% |
| !! | TCAGCTGTCAGTGGTGGCGG+TGG | - | chr4.2:61212245-61212264 | None:intergenic | 65.0% |
| ACTGCTCCGCGCCGCTATCC+GGG | + | chr4.2:61211123-61211142 | MS.gene025434:intron | 70.0% | |
| GACTGCTCCGCGCCGCTATC+CGG | + | chr4.2:61211122-61211141 | MS.gene025434:intron | 70.0% | |
| !! | GCTGTCAGTGGTGGCGGTGG+TGG | - | chr4.2:61212242-61212261 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 61210003 | 61213172 | 61210003 | ID=MS.gene025434 |
| chr4.2 | mRNA | 61210003 | 61213172 | 61210003 | ID=MS.gene025434.t1;Parent=MS.gene025434 |
| chr4.2 | exon | 61210003 | 61210045 | 61210003 | ID=MS.gene025434.t1.exon1;Parent=MS.gene025434.t1 |
| chr4.2 | CDS | 61210003 | 61210045 | 61210003 | ID=cds.MS.gene025434.t1;Parent=MS.gene025434.t1 |
| chr4.2 | exon | 61210124 | 61210252 | 61210124 | ID=MS.gene025434.t1.exon2;Parent=MS.gene025434.t1 |
| chr4.2 | CDS | 61210124 | 61210252 | 61210124 | ID=cds.MS.gene025434.t1;Parent=MS.gene025434.t1 |
| chr4.2 | exon | 61211315 | 61211354 | 61211315 | ID=MS.gene025434.t1.exon3;Parent=MS.gene025434.t1 |
| chr4.2 | CDS | 61211315 | 61211354 | 61211315 | ID=cds.MS.gene025434.t1;Parent=MS.gene025434.t1 |
| chr4.2 | exon | 61212002 | 61212077 | 61212002 | ID=MS.gene025434.t1.exon4;Parent=MS.gene025434.t1 |
| chr4.2 | CDS | 61212002 | 61212077 | 61212002 | ID=cds.MS.gene025434.t1;Parent=MS.gene025434.t1 |
| chr4.2 | exon | 61212176 | 61212376 | 61212176 | ID=MS.gene025434.t1.exon5;Parent=MS.gene025434.t1 |
| chr4.2 | CDS | 61212176 | 61212376 | 61212176 | ID=cds.MS.gene025434.t1;Parent=MS.gene025434.t1 |
| chr4.2 | exon | 61212541 | 61212747 | 61212541 | ID=MS.gene025434.t1.exon6;Parent=MS.gene025434.t1 |
| chr4.2 | CDS | 61212541 | 61212747 | 61212541 | ID=cds.MS.gene025434.t1;Parent=MS.gene025434.t1 |
| chr4.2 | exon | 61212834 | 61213172 | 61212834 | ID=MS.gene025434.t1.exon7;Parent=MS.gene025434.t1 |
| chr4.2 | CDS | 61212834 | 61213172 | 61212834 | ID=cds.MS.gene025434.t1;Parent=MS.gene025434.t1 |
| Gene Sequence |
| Protein sequence |
