Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025453.t1 | XP_003595736.1 | 93.7 | 414 | 25 | 1 | 1 | 414 | 1 | 413 | 7.60E-184 | 653.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025453.t1 | O48716 | 36.4 | 327 | 193 | 7 | 66 | 382 | 97 | 418 | 8.0e-33 | 142.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025453.t1 | G7IGQ9 | 93.7 | 414 | 25 | 1 | 1 | 414 | 1 | 413 | 5.5e-184 | 653.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene025453 | MS.gene75024 | PPI |
| MS.gene049052 | MS.gene025453 | PPI |
| MS.gene025453 | MS.gene027518 | PPI |
| MS.gene025453 | MS.gene58600 | PPI |
| MS.gene025453 | MS.gene66388 | PPI |
| MS.gene001242 | MS.gene025453 | PPI |
| MS.gene025453 | MS.gene015841 | PPI |
| MS.gene025453 | MS.gene05967 | PPI |
| MS.gene45142 | MS.gene025453 | PPI |
| MS.gene025453 | MS.gene063343 | PPI |
| MS.gene025453 | MS.gene049051 | PPI |
| MS.gene030337 | MS.gene025453 | PPI |
| MS.gene20137 | MS.gene025453 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025453.t1 | MTR_2g060070 | 96.377 | 414 | 14 | 1 | 1 | 414 | 1 | 413 | 0.0 | 815 |
| MS.gene025453.t1 | MTR_5g018520 | 40.663 | 332 | 182 | 7 | 61 | 382 | 93 | 419 | 2.97e-74 | 239 |
| MS.gene025453.t1 | MTR_1g021590 | 39.884 | 346 | 187 | 9 | 48 | 382 | 96 | 431 | 6.31e-74 | 238 |
| MS.gene025453.t1 | MTR_8g089650 | 39.130 | 345 | 193 | 8 | 52 | 380 | 83 | 426 | 1.96e-72 | 234 |
| MS.gene025453.t1 | MTR_4g068457 | 38.053 | 339 | 193 | 7 | 61 | 385 | 124 | 459 | 4.32e-70 | 229 |
| MS.gene025453.t1 | MTR_3g078380 | 37.084 | 391 | 204 | 17 | 32 | 383 | 25 | 412 | 3.16e-64 | 212 |
| MS.gene025453.t1 | MTR_5g035980 | 33.419 | 389 | 200 | 13 | 51 | 382 | 57 | 443 | 3.77e-63 | 210 |
| MS.gene025453.t1 | MTR_4g104410 | 35.772 | 369 | 211 | 10 | 29 | 382 | 6 | 363 | 8.15e-60 | 199 |
| MS.gene025453.t1 | MTR_4g106480 | 34.503 | 342 | 196 | 12 | 68 | 383 | 60 | 399 | 4.68e-58 | 195 |
| MS.gene025453.t1 | MTR_3g110185 | 32.370 | 346 | 206 | 11 | 58 | 387 | 81 | 414 | 1.89e-48 | 176 |
| MS.gene025453.t1 | MTR_2g101410 | 28.739 | 341 | 201 | 12 | 66 | 382 | 85 | 407 | 5.92e-35 | 134 |
| MS.gene025453.t1 | MTR_3g088545 | 25.581 | 258 | 151 | 9 | 94 | 329 | 85 | 323 | 8.86e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025453.t1 | AT3G51930 | 66.752 | 391 | 101 | 7 | 23 | 396 | 28 | 406 | 9.63e-177 | 499 |
| MS.gene025453.t1 | AT2G26490 | 42.943 | 333 | 173 | 10 | 61 | 382 | 92 | 418 | 1.73e-78 | 250 |
| MS.gene025453.t1 | AT1G24530 | 39.710 | 345 | 195 | 9 | 47 | 382 | 63 | 403 | 4.13e-74 | 238 |
| MS.gene025453.t1 | AT1G49450 | 38.677 | 393 | 217 | 10 | 13 | 385 | 81 | 469 | 6.14e-72 | 233 |
| MS.gene025453.t1 | AT1G47610 | 39.458 | 332 | 184 | 8 | 66 | 385 | 25 | 351 | 4.72e-71 | 228 |
| MS.gene025453.t1 | AT3G18950 | 36.802 | 394 | 227 | 11 | 12 | 390 | 86 | 472 | 1.68e-66 | 219 |
| MS.gene025453.t1 | AT3G50390 | 37.037 | 351 | 200 | 10 | 58 | 393 | 91 | 435 | 5.16e-66 | 218 |
| MS.gene025453.t1 | AT1G24130 | 37.921 | 356 | 191 | 12 | 52 | 380 | 56 | 408 | 6.78e-66 | 216 |
| MS.gene025453.t1 | AT4G34380 | 38.806 | 335 | 183 | 9 | 66 | 382 | 126 | 456 | 9.95e-65 | 215 |
| MS.gene025453.t1 | AT5G50120 | 34.722 | 360 | 201 | 12 | 55 | 382 | 27 | 384 | 4.81e-58 | 195 |
| MS.gene025453.t1 | AT4G02730 | 23.647 | 351 | 206 | 13 | 42 | 380 | 29 | 329 | 7.19e-13 | 69.7 |
| MS.gene025453.t1 | AT1G21651 | 22.956 | 318 | 213 | 7 | 64 | 381 | 523 | 808 | 3.32e-12 | 68.9 |
| MS.gene025453.t1 | AT1G21650 | 22.101 | 276 | 168 | 6 | 64 | 329 | 523 | 761 | 1.85e-11 | 67.0 |
Find 85 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAATGGGTTGATTTATTC+AGG | 0.158969 | 4.2:+62696187 | MS.gene025453:CDS |
| TCCAACAACGAAAGACTATT+TGG | 0.179030 | 4.2:+62696069 | MS.gene025453:CDS |
| GATGATGGTAAATGGATTTA+TGG | 0.188790 | 4.2:+62696442 | MS.gene025453:CDS |
| TGTAAAGTTGGGGTTATAAT+TGG | 0.191734 | 4.2:+62696646 | MS.gene025453:CDS |
| TATGGCAACAACCAGATTTA+AGG | 0.199159 | 4.2:+62695897 | MS.gene025453:CDS |
| CAGATAAAAGTATAGGTATT+TGG | 0.236613 | 4.2:+62696599 | MS.gene025453:CDS |
| TCTTGTTTGGTTGTTCATAA+TGG | 0.237673 | 4.2:+62696172 | MS.gene025453:CDS |
| GTCAAAGCACTAGCAACTTT+TGG | 0.264942 | 4.2:+62695953 | MS.gene025453:CDS |
| TTGTTTCTGATGATGGTAAA+TGG | 0.278123 | 4.2:+62696434 | MS.gene025453:CDS |
| ATGAAAGAAATTTAGAGAAT+TGG | 0.281705 | 4.2:+62696494 | MS.gene025453:CDS |
| CTTGTTTGGTTGTTCATAAT+GGG | 0.289739 | 4.2:+62696173 | MS.gene025453:CDS |
| AAATTTAGAGAATTGGAAAA+TGG | 0.299786 | 4.2:+62696501 | MS.gene025453:CDS |
| TTGGTAAAATTTGTAAAGTT+GGG | 0.317130 | 4.2:+62696635 | MS.gene025453:CDS |
| CCCAAATAGTCTTTCGTTGT+TGG | 0.324982 | 4.2:-62696070 | None:intergenic |
| GGGATAAGACACTTAAAGTT+TGG | 0.330304 | 4.2:+62696215 | MS.gene025453:CDS |
| TTCGCAAACAACCTTAAATC+TGG | 0.338735 | 4.2:-62695908 | None:intergenic |
| CCAACAACGAAAGACTATTT+GGG | 0.359075 | 4.2:+62696070 | MS.gene025453:CDS |
| GTTTCTGATTTGAAGTGTTT+AGG | 0.360122 | 4.2:+62696241 | MS.gene025453:CDS |
| TTTGGTAAAATTTGTAAAGT+TGG | 0.360311 | 4.2:+62696634 | MS.gene025453:CDS |
| TTCGTGTTTGGAAAGTTTCC+AGG | 0.367861 | 4.2:+62696011 | MS.gene025453:CDS |
| TGCTGATAGCATTTCTTGTT+TGG | 0.374831 | 4.2:+62696159 | MS.gene025453:CDS |
| GAAGTGTTTAGGATCTATTA+AGG | 0.380387 | 4.2:+62696252 | MS.gene025453:CDS |
| TTAAGGTTGTTTGCGAAATT+CGG | 0.381571 | 4.2:+62695914 | MS.gene025453:CDS |
| TGATGATGGAGTAGAAAGTA+TGG | 0.391324 | 4.2:-62695654 | None:intergenic |
| TTGATAGAAGTGTGAGAGTT+TGG | 0.399809 | 4.2:+62696749 | MS.gene025453:CDS |
| ATCAGTTTCTCATAGATCAT+TGG | 0.403558 | 4.2:+62695784 | MS.gene025453:CDS |
| AAGATAGAAAGATTCGTGTT+TGG | 0.404972 | 4.2:+62695999 | MS.gene025453:CDS |
| TTCTGCAGATGGGAAAATTA+AGG | 0.406190 | 4.2:+62696330 | MS.gene025453:CDS |
| TCTGTTGTTGTTTCTGATGA+TGG | 0.413247 | 4.2:+62696427 | MS.gene025453:CDS |
| GCTTCATCATCTAATAGAAT+TGG | 0.416552 | 4.2:+62696697 | MS.gene025453:CDS |
| GCGAAATTCGGTCAAGGCGA+TGG | 0.421578 | 4.2:+62695926 | MS.gene025453:CDS |
| TTTGAAACGAGGGTATTCAT+TGG | 0.441812 | 4.2:-62695629 | None:intergenic |
| CAATATGAACTCACCACATA+AGG | 0.445391 | 4.2:-62695846 | None:intergenic |
| GAACACATTCTCTGAACTCC+TGG | 0.454182 | 4.2:-62696029 | None:intergenic |
| GGTTGATTTATTCAGGGTCA+TGG | 0.455422 | 4.2:+62696194 | MS.gene025453:CDS |
| AGGGCAAAGACATCATAGTA+TGG | 0.455652 | 4.2:+62695879 | MS.gene025453:CDS |
| GTTTATTCTGCTTCTGCAGA+TGG | 0.457417 | 4.2:+62696319 | MS.gene025453:CDS |
| ATTTGGAAAAGAGAGCCTTT+TGG | 0.468370 | 4.2:+62696616 | MS.gene025453:CDS |
| ATGGGTTGGTAGCATGTAAA+GGG | 0.476916 | 4.2:+62696293 | MS.gene025453:CDS |
| GTTTCATGTTTAGCCTTATG+TGG | 0.477781 | 4.2:+62695833 | MS.gene025453:CDS |
| TGAAACAAAGGCACATGAAA+TGG | 0.479515 | 4.2:+62696528 | MS.gene025453:CDS |
| GCACATGATGATGCTATCAA+TGG | 0.482687 | 4.2:+62696274 | MS.gene025453:CDS |
| TTGCTTCTACAACTTGATGA+TGG | 0.490998 | 4.2:-62695668 | None:intergenic |
| GTTCATATTGAGTGCATCAC+AGG | 0.491312 | 4.2:+62695859 | MS.gene025453:CDS |
| GATTTGCATGGTGGTGGTGG+TGG | 0.495012 | 4.2:-62695764 | None:intergenic |
| AATGGGTTGGTAGCATGTAA+AGG | 0.503199 | 4.2:+62696292 | MS.gene025453:CDS |
| TGGTAAAATTTGTAAAGTTG+GGG | 0.503634 | 4.2:+62696636 | MS.gene025453:CDS |
| GGATCAGCAGATAAAAGTAT+AGG | 0.505453 | 4.2:+62696592 | MS.gene025453:CDS |
| ATAATGGGTTGATTTATTCA+GGG | 0.512775 | 4.2:+62696188 | MS.gene025453:CDS |
| ATTAAGGCATGGGGAAAACA+AGG | 0.514895 | 4.2:+62696346 | MS.gene025453:CDS |
| GTTGATTTATTCAGGGTCAT+GGG | 0.520892 | 4.2:+62696195 | MS.gene025453:CDS |
| TTTATTCTGCTTCTGCAGAT+GGG | 0.532550 | 4.2:+62696320 | MS.gene025453:CDS |
| GGAGACATCACAAGAGGTTG+TGG | 0.537342 | 4.2:+62696128 | MS.gene025453:CDS |
| AAAGTATGATGAAACAAAAG+TGG | 0.538411 | 4.2:+62696780 | MS.gene025453:CDS |
| AAACTCTCACACTTCTATCA+AGG | 0.539419 | 4.2:-62696747 | None:intergenic |
| GGGGTTATAATTGGACATGA+AGG | 0.541474 | 4.2:+62696655 | MS.gene025453:CDS |
| ACTGATTTGCATGGTGGTGG+TGG | 0.550762 | 4.2:-62695767 | None:intergenic |
| GAAAATGGTTTGTGAAACAA+AGG | 0.552898 | 4.2:+62696516 | MS.gene025453:CDS |
| AGATGGGAAAATTAAGGCAT+GGG | 0.554116 | 4.2:+62696336 | MS.gene025453:CDS |
| TCATCATCTAATAGAATTGG+TGG | 0.559788 | 4.2:+62696700 | MS.gene025453:CDS |
| TAGAAGTGTGAGAGTTTGGT+GGG | 0.560073 | 4.2:+62696753 | MS.gene025453:CDS |
| TTTGTGTATGTGTTTGATTG+GGG | 0.561324 | 4.2:+62696555 | MS.gene025453:CDS |
| TCATCTAATAGAATTGGTGG+TGG | 0.562304 | 4.2:+62696703 | MS.gene025453:CDS |
| CAGATGGGAAAATTAAGGCA+TGG | 0.562592 | 4.2:+62696335 | MS.gene025453:CDS |
| ATTTATGGAGGTGGTTCTGA+TGG | 0.566760 | 4.2:+62696457 | MS.gene025453:CDS |
| AAAGTAATTATGTTCAAACT+AGG | 0.570479 | 4.2:+62696107 | MS.gene025453:CDS |
| ATAGAAGTGTGAGAGTTTGG+TGG | 0.573934 | 4.2:+62696752 | MS.gene025453:CDS |
| GAAGCTTGTAAACACTTCAC+AGG | 0.574638 | 4.2:-62696679 | None:intergenic |
| TCATCAAGTTGTAGAAGCAA+TGG | 0.574974 | 4.2:+62695671 | MS.gene025453:CDS |
| TTGTTTGCGAAATTCGGTCA+AGG | 0.581090 | 4.2:+62695920 | MS.gene025453:CDS |
| CACATGATGATGCTATCAAT+GGG | 0.607884 | 4.2:+62696275 | MS.gene025453:CDS |
| CAACAACGAAAGACTATTTG+GGG | 0.612464 | 4.2:+62696071 | MS.gene025453:CDS |
| GGTAAATGGATTTATGGAGG+TGG | 0.614977 | 4.2:+62696448 | MS.gene025453:CDS |
| TTGTGTATGTGTTTGATTGG+GGG | 0.615281 | 4.2:+62696556 | MS.gene025453:CDS |
| TTCATATTGAGTGCATCACA+GGG | 0.620924 | 4.2:+62695860 | MS.gene025453:CDS |
| GATGGTAAATGGATTTATGG+AGG | 0.626967 | 4.2:+62696445 | MS.gene025453:CDS |
| TGATGATGCTATCAATGGGT+TGG | 0.627455 | 4.2:+62696279 | MS.gene025453:CDS |
| GAAACTGATTTGCATGGTGG+TGG | 0.634072 | 4.2:-62695770 | None:intergenic |
| GTATGATGAAACAAAAGTGG+AGG | 0.645051 | 4.2:+62696783 | MS.gene025453:CDS |
| CTATGAGAAACTGATTTGCA+TGG | 0.653319 | 4.2:-62695776 | None:intergenic |
| GATGGGAAAATTAAGGCATG+GGG | 0.658308 | 4.2:+62696337 | MS.gene025453:CDS |
| GCGATTCTTTCAGAACACGT+TGG | 0.661081 | 4.2:+62695806 | MS.gene025453:CDS |
| AAACTAGGAGACATCACAAG+AGG | 0.664661 | 4.2:+62696122 | MS.gene025453:CDS |
| TTAAGGCATGGGGAAAACAA+GGG | 0.674587 | 4.2:+62696347 | MS.gene025453:CDS |
| TGAGAAACTGATTTGCATGG+TGG | 0.728963 | 4.2:-62695773 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTTGCATACTTTGAA+AGG | + | chr4.2:62696370-62696389 | MS.gene025453:CDS | 20.0% |
| !! | AAAGTAATTATGTTCAAACT+AGG | + | chr4.2:62696107-62696126 | MS.gene025453:CDS | 20.0% |
| !! | AAATTTAGAGAATTGGAAAA+TGG | + | chr4.2:62696501-62696520 | MS.gene025453:CDS | 20.0% |
| !! | ATGAAAGAAATTTAGAGAAT+TGG | + | chr4.2:62696494-62696513 | MS.gene025453:CDS | 20.0% |
| !! | TTGGTAAAATTTGTAAAGTT+GGG | + | chr4.2:62696635-62696654 | MS.gene025453:CDS | 20.0% |
| !! | TTTGGTAAAATTTGTAAAGT+TGG | + | chr4.2:62696634-62696653 | MS.gene025453:CDS | 20.0% |
| !!! | ACTTTACAAATTTTACCAAA+AGG | - | chr4.2:62696634-62696653 | None:intergenic | 20.0% |
| ! | AAAGTATGATGAAACAAAAG+TGG | + | chr4.2:62696780-62696799 | MS.gene025453:CDS | 25.0% |
| ! | TGGTAAAATTTGTAAAGTTG+GGG | + | chr4.2:62696636-62696655 | MS.gene025453:CDS | 25.0% |
| !! | CAGATAAAAGTATAGGTATT+TGG | + | chr4.2:62696599-62696618 | MS.gene025453:CDS | 25.0% |
| !! | TTTTGTGTATGTGTTTGATT+GGG | + | chr4.2:62696554-62696573 | MS.gene025453:CDS | 25.0% |
| !!! | ACTTTTGTTTCATCATACTT+TGG | - | chr4.2:62696781-62696800 | None:intergenic | 25.0% |
| !!! | ATAATGGGTTGATTTATTCA+GGG | + | chr4.2:62696188-62696207 | MS.gene025453:CDS | 25.0% |
| AAGATAGAAAGATTCGTGTT+TGG | + | chr4.2:62695999-62696018 | MS.gene025453:CDS | 30.0% | |
| ATCAGTTTCTCATAGATCAT+TGG | + | chr4.2:62695784-62695803 | MS.gene025453:CDS | 30.0% | |
| CTTGTTTGGTTGTTCATAAT+GGG | + | chr4.2:62696173-62696192 | MS.gene025453:CDS | 30.0% | |
| GCTTCATCATCTAATAGAAT+TGG | + | chr4.2:62696697-62696716 | MS.gene025453:CDS | 30.0% | |
| TCATCATCTAATAGAATTGG+TGG | + | chr4.2:62696700-62696719 | MS.gene025453:CDS | 30.0% | |
| TGTAAAGTTGGGGTTATAAT+TGG | + | chr4.2:62696646-62696665 | MS.gene025453:CDS | 30.0% | |
| TTAAGGTTGTTTGCGAAATT+CGG | + | chr4.2:62695914-62695933 | MS.gene025453:CDS | 30.0% | |
| TTTGTGTATGTGTTTGATTG+GGG | + | chr4.2:62696555-62696574 | MS.gene025453:CDS | 30.0% | |
| ! | GAAAATGGTTTGTGAAACAA+AGG | + | chr4.2:62696516-62696535 | MS.gene025453:CDS | 30.0% |
| ! | GAAGTGTTTAGGATCTATTA+AGG | + | chr4.2:62696252-62696271 | MS.gene025453:CDS | 30.0% |
| ! | GATGATGGTAAATGGATTTA+TGG | + | chr4.2:62696442-62696461 | MS.gene025453:CDS | 30.0% |
| ! | GTTTCTGATTTGAAGTGTTT+AGG | + | chr4.2:62696241-62696260 | MS.gene025453:CDS | 30.0% |
| ! | GTTTTGTGTATGTGTTTGAT+TGG | + | chr4.2:62696553-62696572 | MS.gene025453:CDS | 30.0% |
| ! | TCTTGTTTGGTTGTTCATAA+TGG | + | chr4.2:62696172-62696191 | MS.gene025453:CDS | 30.0% |
| !! | CATAATGGGTTGATTTATTC+AGG | + | chr4.2:62696187-62696206 | MS.gene025453:CDS | 30.0% |
| !! | GTGGATTTTTGTTGTATAGT+GGG | + | chr4.2:62696722-62696741 | MS.gene025453:CDS | 30.0% |
| !! | TTGTTTCTGATGATGGTAAA+TGG | + | chr4.2:62696434-62696453 | MS.gene025453:CDS | 30.0% |
| !!! | AAAGTATGGATTTTGAAACG+AGG | - | chr4.2:62695643-62695662 | None:intergenic | 30.0% |
| !!! | AAGTATGGATTTTGAAACGA+GGG | - | chr4.2:62695642-62695661 | None:intergenic | 30.0% |
| !!! | ACTTTGAAAGGTGTTTTAGA+GGG | + | chr4.2:62696382-62696401 | MS.gene025453:CDS | 30.0% |
| !!! | TACTTTGAAAGGTGTTTTAG+AGG | + | chr4.2:62696381-62696400 | MS.gene025453:CDS | 30.0% |
| AAACTCTCACACTTCTATCA+AGG | - | chr4.2:62696750-62696769 | None:intergenic | 35.0% | |
| AGATGGGAAAATTAAGGCAT+GGG | + | chr4.2:62696336-62696355 | MS.gene025453:CDS | 35.0% | |
| CAACAACGAAAGACTATTTG+GGG | + | chr4.2:62696071-62696090 | MS.gene025453:CDS | 35.0% | |
| CAATATGAACTCACCACATA+AGG | - | chr4.2:62695849-62695868 | None:intergenic | 35.0% | |
| CCAACAACGAAAGACTATTT+GGG | + | chr4.2:62696070-62696089 | MS.gene025453:CDS | 35.0% | |
| GGGATAAGACACTTAAAGTT+TGG | + | chr4.2:62696215-62696234 | MS.gene025453:CDS | 35.0% | |
| GTATGATGAAACAAAAGTGG+AGG | + | chr4.2:62696783-62696802 | MS.gene025453:CDS | 35.0% | |
| TATGGCAACAACCAGATTTA+AGG | + | chr4.2:62695897-62695916 | MS.gene025453:CDS | 35.0% | |
| TCATCTAATAGAATTGGTGG+TGG | + | chr4.2:62696703-62696722 | MS.gene025453:CDS | 35.0% | |
| TCCAACAACGAAAGACTATT+TGG | + | chr4.2:62696069-62696088 | MS.gene025453:CDS | 35.0% | |
| TGCTGATAGCATTTCTTGTT+TGG | + | chr4.2:62696159-62696178 | MS.gene025453:CDS | 35.0% | |
| TTCATATTGAGTGCATCACA+GGG | + | chr4.2:62695860-62695879 | MS.gene025453:CDS | 35.0% | |
| TTCGCAAACAACCTTAAATC+TGG | - | chr4.2:62695911-62695930 | None:intergenic | 35.0% | |
| TTCTGCAGATGGGAAAATTA+AGG | + | chr4.2:62696330-62696349 | MS.gene025453:CDS | 35.0% | |
| TTGCTTCTACAACTTGATGA+TGG | - | chr4.2:62695671-62695690 | None:intergenic | 35.0% | |
| TTGTGTATGTGTTTGATTGG+GGG | + | chr4.2:62696556-62696575 | MS.gene025453:CDS | 35.0% | |
| TTTATTCTGCTTCTGCAGAT+GGG | + | chr4.2:62696320-62696339 | MS.gene025453:CDS | 35.0% | |
| ! | ATTTGGAAAAGAGAGCCTTT+TGG | + | chr4.2:62696616-62696635 | MS.gene025453:CDS | 35.0% |
| ! | CACATGATGATGCTATCAAT+GGG | + | chr4.2:62696275-62696294 | MS.gene025453:CDS | 35.0% |
| ! | GATGGTAAATGGATTTATGG+AGG | + | chr4.2:62696445-62696464 | MS.gene025453:CDS | 35.0% |
| ! | GGATCAGCAGATAAAAGTAT+AGG | + | chr4.2:62696592-62696611 | MS.gene025453:CDS | 35.0% |
| ! | GTTGATTTATTCAGGGTCAT+GGG | + | chr4.2:62696195-62696214 | MS.gene025453:CDS | 35.0% |
| ! | TCATCAAGTTGTAGAAGCAA+TGG | + | chr4.2:62695671-62695690 | MS.gene025453:CDS | 35.0% |
| ! | TGAAACAAAGGCACATGAAA+TGG | + | chr4.2:62696528-62696547 | MS.gene025453:CDS | 35.0% |
| ! | TTGATAGAAGTGTGAGAGTT+TGG | + | chr4.2:62696749-62696768 | MS.gene025453:CDS | 35.0% |
| !! | CTATGAGAAACTGATTTGCA+TGG | - | chr4.2:62695779-62695798 | None:intergenic | 35.0% |
| !! | GGTGGATTTTTGTTGTATAG+TGG | + | chr4.2:62696721-62696740 | MS.gene025453:CDS | 35.0% |
| !! | GTTTCATGTTTAGCCTTATG+TGG | + | chr4.2:62695833-62695852 | MS.gene025453:CDS | 35.0% |
| !! | TCTGTTGTTGTTTCTGATGA+TGG | + | chr4.2:62696427-62696446 | MS.gene025453:CDS | 35.0% |
| !! | TGATGATGGAGTAGAAAGTA+TGG | - | chr4.2:62695657-62695676 | None:intergenic | 35.0% |
| AAACTAGGAGACATCACAAG+AGG | + | chr4.2:62696122-62696141 | MS.gene025453:CDS | 40.0% | |
| AGGGCAAAGACATCATAGTA+TGG | + | chr4.2:62695879-62695898 | MS.gene025453:CDS | 40.0% | |
| ATTAAGGCATGGGGAAAACA+AGG | + | chr4.2:62696346-62696365 | MS.gene025453:CDS | 40.0% | |
| CAGATGGGAAAATTAAGGCA+TGG | + | chr4.2:62696335-62696354 | MS.gene025453:CDS | 40.0% | |
| CCCAAATAGTCTTTCGTTGT+TGG | - | chr4.2:62696073-62696092 | None:intergenic | 40.0% | |
| GAAGCTTGTAAACACTTCAC+AGG | - | chr4.2:62696682-62696701 | None:intergenic | 40.0% | |
| GATGGGAAAATTAAGGCATG+GGG | + | chr4.2:62696337-62696356 | MS.gene025453:CDS | 40.0% | |
| GGGGTTATAATTGGACATGA+AGG | + | chr4.2:62696655-62696674 | MS.gene025453:CDS | 40.0% | |
| GTTCATATTGAGTGCATCAC+AGG | + | chr4.2:62695859-62695878 | MS.gene025453:CDS | 40.0% | |
| GTTTATTCTGCTTCTGCAGA+TGG | + | chr4.2:62696319-62696338 | MS.gene025453:CDS | 40.0% | |
| TTAAGGCATGGGGAAAACAA+GGG | + | chr4.2:62696347-62696366 | MS.gene025453:CDS | 40.0% | |
| TTCGTGTTTGGAAAGTTTCC+AGG | + | chr4.2:62696011-62696030 | MS.gene025453:CDS | 40.0% | |
| TTGTTTGCGAAATTCGGTCA+AGG | + | chr4.2:62695920-62695939 | MS.gene025453:CDS | 40.0% | |
| ! | ATAGAAGTGTGAGAGTTTGG+TGG | + | chr4.2:62696752-62696771 | MS.gene025453:CDS | 40.0% |
| ! | GCACATGATGATGCTATCAA+TGG | + | chr4.2:62696274-62696293 | MS.gene025453:CDS | 40.0% |
| ! | GGTAAATGGATTTATGGAGG+TGG | + | chr4.2:62696448-62696467 | MS.gene025453:CDS | 40.0% |
| ! | GGTTGATTTATTCAGGGTCA+TGG | + | chr4.2:62696194-62696213 | MS.gene025453:CDS | 40.0% |
| ! | TAGAAGTGTGAGAGTTTGGT+GGG | + | chr4.2:62696753-62696772 | MS.gene025453:CDS | 40.0% |
| ! | TGATGATGCTATCAATGGGT+TGG | + | chr4.2:62696279-62696298 | MS.gene025453:CDS | 40.0% |
| !! | AATGGGTTGGTAGCATGTAA+AGG | + | chr4.2:62696292-62696311 | MS.gene025453:CDS | 40.0% |
| !! | ATGGGTTGGTAGCATGTAAA+GGG | + | chr4.2:62696293-62696312 | MS.gene025453:CDS | 40.0% |
| !! | ATTTATGGAGGTGGTTCTGA+TGG | + | chr4.2:62696457-62696476 | MS.gene025453:CDS | 40.0% |
| !! | GTCAAAGCACTAGCAACTTT+TGG | + | chr4.2:62695953-62695972 | MS.gene025453:CDS | 40.0% |
| !! | TGAGAAACTGATTTGCATGG+TGG | - | chr4.2:62695776-62695795 | None:intergenic | 40.0% |
| GAACACATTCTCTGAACTCC+TGG | - | chr4.2:62696032-62696051 | None:intergenic | 45.0% | |
| GCGATTCTTTCAGAACACGT+TGG | + | chr4.2:62695806-62695825 | MS.gene025453:CDS | 45.0% | |
| !! | GAAACTGATTTGCATGGTGG+TGG | - | chr4.2:62695773-62695792 | None:intergenic | 45.0% |
| !!! | ATTGGGGGTTTTTTGTGCAC+AGG | + | chr4.2:62696571-62696590 | MS.gene025453:CDS | 45.0% |
| GGAGACATCACAAGAGGTTG+TGG | + | chr4.2:62696128-62696147 | MS.gene025453:CDS | 50.0% | |
| !! | ACTGATTTGCATGGTGGTGG+TGG | - | chr4.2:62695770-62695789 | None:intergenic | 50.0% |
| GCGAAATTCGGTCAAGGCGA+TGG | + | chr4.2:62695926-62695945 | MS.gene025453:CDS | 55.0% | |
| !! | GATTTGCATGGTGGTGGTGG+TGG | - | chr4.2:62695767-62695786 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 62695632 | 62696876 | 62695632 | ID=MS.gene025453 |
| chr4.2 | mRNA | 62695632 | 62696876 | 62695632 | ID=MS.gene025453.t1;Parent=MS.gene025453 |
| chr4.2 | exon | 62695632 | 62696876 | 62695632 | ID=MS.gene025453.t1.exon1;Parent=MS.gene025453.t1 |
| chr4.2 | CDS | 62695632 | 62696876 | 62695632 | ID=cds.MS.gene025453.t1;Parent=MS.gene025453.t1 |
| Gene Sequence |
| Protein sequence |
