Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58600.t1 | XP_003613387.1 | 92.1 | 392 | 27 | 3 | 61 | 451 | 60 | 448 | 4.30E-172 | 614.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58600.t1 | O48716 | 29.2 | 367 | 196 | 6 | 110 | 446 | 86 | 418 | 1.4e-35 | 152.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58600.t1 | G7K5I2 | 92.1 | 392 | 27 | 3 | 61 | 451 | 60 | 448 | 3.1e-172 | 614.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene51070 | MS.gene58600 | PPI |
MS.gene01884 | MS.gene58600 | PPI |
MS.gene20137 | MS.gene58600 | PPI |
MS.gene84203 | MS.gene58600 | PPI |
MS.gene00843 | MS.gene58600 | PPI |
MS.gene047966 | MS.gene58600 | PPI |
MS.gene025453 | MS.gene58600 | PPI |
MS.gene063343 | MS.gene58600 | PPI |
MS.gene049052 | MS.gene58600 | PPI |
MS.gene78433 | MS.gene58600 | PPI |
MS.gene58600 | MS.gene003568 | PPI |
MS.gene58600 | MS.gene05967 | PPI |
MS.gene71143 | MS.gene58600 | PPI |
MS.gene58600 | MS.gene002926 | PPI |
MS.gene057845 | MS.gene58600 | PPI |
MS.gene062996 | MS.gene58600 | PPI |
MS.gene58600 | MS.gene015841 | PPI |
MS.gene037500 | MS.gene58600 | PPI |
MS.gene66388 | MS.gene58600 | PPI |
MS.gene34575 | MS.gene58600 | PPI |
MS.gene037505 | MS.gene58600 | PPI |
MS.gene057771 | MS.gene58600 | PPI |
MS.gene030337 | MS.gene58600 | PPI |
MS.gene58600 | MS.gene75024 | PPI |
MS.gene58600 | MS.gene34510 | PPI |
MS.gene049051 | MS.gene58600 | PPI |
MS.gene58600 | MS.gene77337 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58600.t1 | MTR_5g035980 | 96.018 | 452 | 13 | 4 | 1 | 451 | 1 | 448 | 0.0 | 871 |
MS.gene58600.t1 | MTR_3g078380 | 52.558 | 430 | 149 | 14 | 37 | 451 | 25 | 414 | 1.05e-135 | 397 |
MS.gene58600.t1 | MTR_4g106480 | 50.711 | 422 | 164 | 9 | 35 | 451 | 19 | 401 | 1.47e-133 | 390 |
MS.gene58600.t1 | MTR_8g089650 | 47.242 | 417 | 157 | 13 | 45 | 448 | 64 | 430 | 2.28e-110 | 333 |
MS.gene58600.t1 | MTR_4g104410 | 42.967 | 391 | 165 | 15 | 61 | 446 | 26 | 363 | 5.54e-82 | 257 |
MS.gene58600.t1 | MTR_5g018520 | 34.554 | 437 | 227 | 10 | 13 | 447 | 41 | 420 | 4.84e-78 | 250 |
MS.gene58600.t1 | MTR_1g021590 | 36.000 | 400 | 202 | 9 | 48 | 446 | 85 | 431 | 6.08e-77 | 248 |
MS.gene58600.t1 | MTR_4g068457 | 38.032 | 376 | 180 | 10 | 74 | 446 | 131 | 456 | 4.99e-71 | 233 |
MS.gene58600.t1 | MTR_2g060070 | 34.103 | 390 | 195 | 13 | 59 | 446 | 52 | 381 | 1.42e-64 | 214 |
MS.gene58600.t1 | MTR_3g110185 | 32.962 | 449 | 226 | 12 | 18 | 448 | 20 | 411 | 8.47e-52 | 187 |
MS.gene58600.t1 | MTR_2g101410 | 32.000 | 400 | 202 | 14 | 58 | 448 | 71 | 409 | 3.91e-47 | 168 |
MS.gene58600.t1 | MTR_2g086140 | 32.934 | 167 | 101 | 4 | 246 | 409 | 16 | 174 | 5.14e-14 | 75.1 |
MS.gene58600.t1 | MTR_4g053675 | 31.361 | 169 | 105 | 4 | 246 | 409 | 16 | 178 | 2.67e-12 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58600.t1 | AT1G24130 | 52.222 | 450 | 171 | 10 | 7 | 451 | 5 | 415 | 1.33e-140 | 409 |
MS.gene58600.t1 | AT5G50120 | 46.117 | 412 | 183 | 10 | 43 | 449 | 10 | 387 | 4.88e-118 | 350 |
MS.gene58600.t1 | AT1G24530 | 45.874 | 412 | 163 | 13 | 39 | 448 | 52 | 405 | 4.16e-103 | 313 |
MS.gene58600.t1 | AT2G26490 | 37.037 | 378 | 185 | 8 | 74 | 451 | 99 | 423 | 2.76e-75 | 243 |
MS.gene58600.t1 | AT3G50390 | 35.323 | 402 | 198 | 11 | 53 | 446 | 77 | 424 | 8.09e-72 | 234 |
MS.gene58600.t1 | AT3G18950 | 35.325 | 385 | 192 | 10 | 66 | 446 | 133 | 464 | 1.61e-68 | 226 |
MS.gene58600.t1 | AT3G51930 | 34.951 | 412 | 221 | 12 | 38 | 446 | 27 | 394 | 4.25e-68 | 223 |
MS.gene58600.t1 | AT4G34380 | 35.279 | 377 | 192 | 9 | 74 | 446 | 128 | 456 | 1.87e-67 | 224 |
MS.gene58600.t1 | AT1G49450 | 35.567 | 388 | 193 | 10 | 66 | 446 | 129 | 466 | 3.86e-67 | 222 |
MS.gene58600.t1 | AT1G47610 | 33.854 | 384 | 197 | 13 | 68 | 449 | 21 | 349 | 1.48e-61 | 204 |
MS.gene58600.t1 | AT1G21650 | 28.191 | 188 | 104 | 6 | 198 | 383 | 522 | 680 | 1.18e-11 | 67.8 |
MS.gene58600.t1 | AT1G21651 | 27.660 | 188 | 105 | 6 | 198 | 383 | 522 | 680 | 1.22e-11 | 67.4 |
MS.gene58600.t1 | AT3G44530 | 30.909 | 165 | 101 | 5 | 246 | 406 | 16 | 171 | 2.83e-11 | 66.2 |
MS.gene58600.t1 | AT3G44530 | 30.909 | 165 | 101 | 5 | 246 | 406 | 16 | 171 | 2.96e-11 | 66.2 |
MS.gene58600.t1 | AT5G16750 | 25.296 | 253 | 149 | 11 | 166 | 405 | 361 | 586 | 6.15e-11 | 65.1 |
MS.gene58600.t1 | AT4G02730 | 24.528 | 265 | 142 | 9 | 174 | 405 | 64 | 303 | 9.64e-11 | 63.5 |
Find 57 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAATTGTTGTTTCATCTTC+TGG | 0.080562 | 5.3:+24561073 | MS.gene58600:CDS |
TAGCCTTAGTATGCCCTCTT+AGG | 0.234642 | 5.3:-24561390 | None:intergenic |
CTGATTATAGTGTTAGATTA+TGG | 0.250597 | 5.3:+24561458 | MS.gene58600:CDS |
AACAACAATCATTGACTTGA+TGG | 0.262801 | 5.3:-24560696 | None:intergenic |
CACTCCAAGTTTCTCTTTAG+TGG | 0.274749 | 5.3:+24560569 | MS.gene58600:CDS |
CAATTGTTGTTTCATCTTCT+GGG | 0.279540 | 5.3:+24561074 | MS.gene58600:CDS |
AAATCTTCTTATTTCACTAT+TGG | 0.282755 | 5.3:-24560597 | None:intergenic |
CTGATAGAAAGATCAAAATT+TGG | 0.302795 | 5.3:+24561116 | MS.gene58600:CDS |
TCTTCTGGGGTTGTTTATAC+AGG | 0.311488 | 5.3:+24561088 | MS.gene58600:CDS |
GGGATAGAACATTCAAAATA+TGG | 0.313540 | 5.3:+24560990 | MS.gene58600:CDS |
TACTAAGGCTATATTATGTT+TGG | 0.339007 | 5.3:+24561402 | MS.gene58600:CDS |
TCTCTTGCTGTTTCGAAAGA+TGG | 0.341375 | 5.3:+24560944 | MS.gene58600:CDS |
AGCATTATTCGAAATTGTTC+CGG | 0.359690 | 5.3:+24561322 | MS.gene58600:CDS |
CTCATCAAGATCACAAAATC+CGG | 0.361786 | 5.3:+24560738 | MS.gene58600:CDS |
TTGATTGTGATATCAAAGTT+TGG | 0.373353 | 5.3:+24561641 | MS.gene58600:CDS |
AGACCCCGACGACGAAAATA+TGG | 0.377517 | 5.3:+24561354 | MS.gene58600:CDS |
TAGAAAAGCTGTTAAGTGTT+TGG | 0.380566 | 5.3:+24561534 | MS.gene58600:CDS |
TTTGGTTGTGATGGATGATT+TGG | 0.392229 | 5.3:+24561420 | MS.gene58600:CDS |
AAGATCACAAAATCCGGGTT+TGG | 0.420178 | 5.3:+24560744 | MS.gene58600:CDS |
TTTGAAGCTTGAAGAGCAAA+AGG | 0.427788 | 5.3:-24560629 | None:intergenic |
AGATGGATTGTTTCTTTACT+CGG | 0.453556 | 5.3:+24560961 | MS.gene58600:CDS |
AGTGTTAGATTATGGAAAAG+AGG | 0.466262 | 5.3:+24561466 | MS.gene58600:CDS |
ATTCTGAATGAATGTGATCA+TGG | 0.475540 | 5.3:-24560409 | None:intergenic |
CTATGCATTTAAATAGCCTC+TGG | 0.479262 | 5.3:-24560808 | None:intergenic |
GTCCTAGTTGGTGCCCTAAG+AGG | 0.490038 | 5.3:+24561376 | MS.gene58600:CDS |
TGTTTCTTTACTCGGCTTCG+TGG | 0.493077 | 5.3:+24560969 | MS.gene58600:CDS |
GTGTAGAGCAAGGGATGAGA+TGG | 0.499982 | 5.3:-24560549 | None:intergenic |
GTCGGGGTCTTGGTCTAGTC+CGG | 0.501507 | 5.3:-24561341 | None:intergenic |
TATATTATGTTTGGTTGTGA+TGG | 0.503707 | 5.3:+24561411 | MS.gene58600:CDS |
TGTAGAGCAAGGGATGAGAT+GGG | 0.504036 | 5.3:-24560548 | None:intergenic |
GAAGGAACAGAAGGTAGACT+TGG | 0.519410 | 5.3:-24560461 | None:intergenic |
AGCCTTAGTATGCCCTCTTA+GGG | 0.526558 | 5.3:-24561389 | None:intergenic |
GTTTCTTTACTCGGCTTCGT+GGG | 0.536613 | 5.3:+24560970 | MS.gene58600:CDS |
GCTTTAGCACTAAACAAAGA+TGG | 0.541869 | 5.3:+24561241 | MS.gene58600:CDS |
AGAACCACTAAAGAGAAACT+TGG | 0.542022 | 5.3:-24560573 | None:intergenic |
GAAGTGAGAGAAGGAACAGA+AGG | 0.544583 | 5.3:-24560470 | None:intergenic |
ATGGATGATTTGGTGTGTAG+TGG | 0.553153 | 5.3:+24561430 | MS.gene58600:CDS |
TCCTAGTTGGTGCCCTAAGA+GGG | 0.557068 | 5.3:+24561377 | MS.gene58600:CDS |
ATAGCAGATGATTCCAAAAG+TGG | 0.557521 | 5.3:+24561559 | MS.gene58600:CDS |
TTGAAGCTTGAAGAGCAAAA+GGG | 0.560630 | 5.3:-24560628 | None:intergenic |
TGCCCTAAGAGGGCATACTA+AGG | 0.569818 | 5.3:+24561387 | MS.gene58600:CDS |
GACGAAAATATGGTCCTAGT+TGG | 0.570714 | 5.3:+24561364 | MS.gene58600:CDS |
TTCAAACAATATCAACAACT+TGG | 0.579730 | 5.3:+24560646 | MS.gene58600:CDS |
GCCCTCTTAGGGCACCAACT+AGG | 0.579791 | 5.3:-24561378 | None:intergenic |
AATTGTTGTTTCATCTTCTG+GGG | 0.581898 | 5.3:+24561075 | MS.gene58600:CDS |
AACTTGGTAGCAATCAGTAA+TGG | 0.589681 | 5.3:+24560662 | MS.gene58600:CDS |
GAAACTTGGAGTGTAGAGCA+AGG | 0.590373 | 5.3:-24560559 | None:intergenic |
AAACTTGGAGTGTAGAGCAA+GGG | 0.599872 | 5.3:-24560558 | None:intergenic |
AGTTCTTATCTTGTTTACAG+TGG | 0.604622 | 5.3:+24561613 | MS.gene58600:CDS |
TCATCAAGATCACAAAATCC+GGG | 0.616047 | 5.3:+24560739 | MS.gene58600:CDS |
GGTGGGGTTGATGATGATGA+TGG | 0.618938 | 5.3:+24561589 | MS.gene58600:CDS |
TTCTGAATGAATGTGATCAT+GGG | 0.626189 | 5.3:-24560408 | None:intergenic |
GATTGTTGTGAAGTGAGAGA+AGG | 0.627747 | 5.3:-24560479 | None:intergenic |
GGAGACATAAGAAGTATACA+TGG | 0.631337 | 5.3:+24560897 | MS.gene58600:CDS |
GAGACATAAGAAGTATACAT+GGG | 0.687899 | 5.3:+24560898 | MS.gene58600:CDS |
ATGTGATCATGGGAAGAATG+AGG | 0.690153 | 5.3:-24560398 | None:intergenic |
ATAGTACTAATCAAGACCAG+AGG | 0.717522 | 5.3:+24560792 | MS.gene58600:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAAAAGAAAAAGCATTTTT+TGG | + | chr5.3:24561183-24561202 | MS.gene58600:CDS | 15.0% |
!!! | AAATCTTCTTATTTCACTAT+TGG | - | chr5.3:24560600-24560619 | None:intergenic | 20.0% |
!!! | TGATAGATCAATTTTAGTTT+GGG | + | chr5.3:24561288-24561307 | MS.gene58600:CDS | 20.0% |
! | CTGATAGAAAGATCAAAATT+TGG | + | chr5.3:24561116-24561135 | MS.gene58600:CDS | 25.0% |
! | CTGATTATAGTGTTAGATTA+TGG | + | chr5.3:24561458-24561477 | MS.gene58600:CDS | 25.0% |
! | TACTAAGGCTATATTATGTT+TGG | + | chr5.3:24561402-24561421 | MS.gene58600:CDS | 25.0% |
! | TATATTATGTTTGGTTGTGA+TGG | + | chr5.3:24561411-24561430 | MS.gene58600:CDS | 25.0% |
! | TGAAAAAAGTTATGCATGTT+TGG | + | chr5.3:24561495-24561514 | MS.gene58600:CDS | 25.0% |
! | TTCAAACAATATCAACAACT+TGG | + | chr5.3:24560646-24560665 | MS.gene58600:CDS | 25.0% |
! | TTGATTGTGATATCAAAGTT+TGG | + | chr5.3:24561641-24561660 | MS.gene58600:CDS | 25.0% |
!! | TTTTTCATCGAAAAATTACG+TGG | + | chr5.3:24560868-24560887 | MS.gene58600:CDS | 25.0% |
!!! | AAGAAAAAGCATTTTTTGGT+TGG | + | chr5.3:24561187-24561206 | MS.gene58600:CDS | 25.0% |
!!! | CTGTTTTTTGTTTTTGTTGT+TGG | - | chr5.3:24560376-24560395 | None:intergenic | 25.0% |
!!! | GTGATAGATCAATTTTAGTT+TGG | + | chr5.3:24561287-24561306 | MS.gene58600:CDS | 25.0% |
AGCATTATTCGAAATTGTTC+CGG | + | chr5.3:24561322-24561341 | MS.gene58600:CDS | 30.0% | |
AGTGTTAGATTATGGAAAAG+AGG | + | chr5.3:24561466-24561485 | MS.gene58600:CDS | 30.0% | |
ATTCTGAATGAATGTGATCA+TGG | - | chr5.3:24560412-24560431 | None:intergenic | 30.0% | |
GAAAAACGATCATTGAATGT+TGG | - | chr5.3:24560842-24560861 | None:intergenic | 30.0% | |
GATTCCAAAAGTGGTAAAAA+TGG | + | chr5.3:24561568-24561587 | MS.gene58600:CDS | 30.0% | |
GGGATAGAACATTCAAAATA+TGG | + | chr5.3:24560990-24561009 | MS.gene58600:CDS | 30.0% | |
TAGAAAAGCTGTTAAGTGTT+TGG | + | chr5.3:24561534-24561553 | MS.gene58600:CDS | 30.0% | |
TTCTGAATGAATGTGATCAT+GGG | - | chr5.3:24560411-24560430 | None:intergenic | 30.0% | |
! | AGTTCTTATCTTGTTTACAG+TGG | + | chr5.3:24561613-24561632 | MS.gene58600:CDS | 30.0% |
! | GAGACATAAGAAGTATACAT+GGG | + | chr5.3:24560898-24560917 | MS.gene58600:CDS | 30.0% |
!! | AACAACAATCATTGACTTGA+TGG | - | chr5.3:24560699-24560718 | None:intergenic | 30.0% |
!! | AATTGTTGTTTCATCTTCTG+GGG | + | chr5.3:24561075-24561094 | MS.gene58600:CDS | 30.0% |
!! | AGATGGATTGTTTCTTTACT+CGG | + | chr5.3:24560961-24560980 | MS.gene58600:CDS | 30.0% |
!! | CAATTGTTGTTTCATCTTCT+GGG | + | chr5.3:24561074-24561093 | MS.gene58600:CDS | 30.0% |
!! | GATGGATCAGTTTTATATTC+AGG | + | chr5.3:24561259-24561278 | MS.gene58600:CDS | 30.0% |
AGAACCACTAAAGAGAAACT+TGG | - | chr5.3:24560576-24560595 | None:intergenic | 35.0% | |
ATAGCAGATGATTCCAAAAG+TGG | + | chr5.3:24561559-24561578 | MS.gene58600:CDS | 35.0% | |
ATAGTACTAATCAAGACCAG+AGG | + | chr5.3:24560792-24560811 | MS.gene58600:CDS | 35.0% | |
CAAAAGTGGTAAAAATGGTG+GGG | + | chr5.3:24561573-24561592 | MS.gene58600:CDS | 35.0% | |
CCAAAAGTGGTAAAAATGGT+GGG | + | chr5.3:24561572-24561591 | MS.gene58600:CDS | 35.0% | |
CTATGCATTTAAATAGCCTC+TGG | - | chr5.3:24560811-24560830 | None:intergenic | 35.0% | |
CTCATCAAGATCACAAAATC+CGG | + | chr5.3:24560738-24560757 | MS.gene58600:CDS | 35.0% | |
GCTTTAGCACTAAACAAAGA+TGG | + | chr5.3:24561241-24561260 | MS.gene58600:CDS | 35.0% | |
TCATCAAGATCACAAAATCC+GGG | + | chr5.3:24560739-24560758 | MS.gene58600:CDS | 35.0% | |
TCCAAAAGTGGTAAAAATGG+TGG | + | chr5.3:24561571-24561590 | MS.gene58600:CDS | 35.0% | |
TTGAAGCTTGAAGAGCAAAA+GGG | - | chr5.3:24560631-24560650 | None:intergenic | 35.0% | |
! | AACTTGGTAGCAATCAGTAA+TGG | + | chr5.3:24560662-24560681 | MS.gene58600:CDS | 35.0% |
! | GGAGACATAAGAAGTATACA+TGG | + | chr5.3:24560897-24560916 | MS.gene58600:CDS | 35.0% |
! | TTGTTTCGATTTTCCAAACC+CGG | - | chr5.3:24560760-24560779 | None:intergenic | 35.0% |
! | TTTGAAGCTTGAAGAGCAAA+AGG | - | chr5.3:24560632-24560651 | None:intergenic | 35.0% |
! | TTTTGTGTGTAGCAACAACA+AGG | - | chr5.3:24560353-24560372 | None:intergenic | 35.0% |
!! | GCAATTGTTGTTTCATCTTC+TGG | + | chr5.3:24561073-24561092 | MS.gene58600:CDS | 35.0% |
!! | TTTGGTTGTGATGGATGATT+TGG | + | chr5.3:24561420-24561439 | MS.gene58600:CDS | 35.0% |
!!! | GCATTTTTTGGTTGGAACAT+TGG | + | chr5.3:24561195-24561214 | MS.gene58600:CDS | 35.0% |
AAACTTGGAGTGTAGAGCAA+GGG | - | chr5.3:24560561-24560580 | None:intergenic | 40.0% | |
AAGATCACAAAATCCGGGTT+TGG | + | chr5.3:24560744-24560763 | MS.gene58600:CDS | 40.0% | |
ATGTGATCATGGGAAGAATG+AGG | - | chr5.3:24560401-24560420 | None:intergenic | 40.0% | |
CACTCCAAGTTTCTCTTTAG+TGG | + | chr5.3:24560569-24560588 | MS.gene58600:CDS | 40.0% | |
CGAAAAATTACGTGGAAGTC+AGG | + | chr5.3:24560876-24560895 | MS.gene58600:CDS | 40.0% | |
GACGAAAATATGGTCCTAGT+TGG | + | chr5.3:24561364-24561383 | MS.gene58600:CDS | 40.0% | |
GATTGTTGTGAAGTGAGAGA+AGG | - | chr5.3:24560482-24560501 | None:intergenic | 40.0% | |
! | TAGGACCATATTTTCGTCGT+CGG | - | chr5.3:24561362-24561381 | None:intergenic | 40.0% |
!! | ATGGATGATTTGGTGTGTAG+TGG | + | chr5.3:24561430-24561449 | MS.gene58600:CDS | 40.0% |
!! | CCCACCATTTTTACCACTTT+TGG | - | chr5.3:24561575-24561594 | None:intergenic | 40.0% |
!! | TCTCTTGCTGTTTCGAAAGA+TGG | + | chr5.3:24560944-24560963 | MS.gene58600:CDS | 40.0% |
!! | TCTTCTGGGGTTGTTTATAC+AGG | + | chr5.3:24561088-24561107 | MS.gene58600:CDS | 40.0% |
AGCCTTAGTATGCCCTCTTA+GGG | - | chr5.3:24561392-24561411 | None:intergenic | 45.0% | |
GAAACTTGGAGTGTAGAGCA+AGG | - | chr5.3:24560562-24560581 | None:intergenic | 45.0% | |
GAAGGAACAGAAGGTAGACT+TGG | - | chr5.3:24560464-24560483 | None:intergenic | 45.0% | |
GAAGTGAGAGAAGGAACAGA+AGG | - | chr5.3:24560473-24560492 | None:intergenic | 45.0% | |
GTTTCTTTACTCGGCTTCGT+GGG | + | chr5.3:24560970-24560989 | MS.gene58600:CDS | 45.0% | |
TGTAGAGCAAGGGATGAGAT+GGG | - | chr5.3:24560551-24560570 | None:intergenic | 45.0% | |
TGTTTCTTTACTCGGCTTCG+TGG | + | chr5.3:24560969-24560988 | MS.gene58600:CDS | 45.0% | |
! | AGGACCATATTTTCGTCGTC+GGG | - | chr5.3:24561361-24561380 | None:intergenic | 45.0% |
! | TAGCCTTAGTATGCCCTCTT+AGG | - | chr5.3:24561393-24561412 | None:intergenic | 45.0% |
!! | GCATGTTTGGCTGTTTTGCA+AGG | + | chr5.3:24561508-24561527 | MS.gene58600:CDS | 45.0% |
AGACCCCGACGACGAAAATA+TGG | + | chr5.3:24561354-24561373 | MS.gene58600:CDS | 50.0% | |
GTGTAGAGCAAGGGATGAGA+TGG | - | chr5.3:24560552-24560571 | None:intergenic | 50.0% | |
! | GGACCATATTTTCGTCGTCG+GGG | - | chr5.3:24561360-24561379 | None:intergenic | 50.0% |
! | TATTTTCGTCGTCGGGGTCT+TGG | - | chr5.3:24561354-24561373 | None:intergenic | 50.0% |
! | TCCTAGTTGGTGCCCTAAGA+GGG | + | chr5.3:24561377-24561396 | MS.gene58600:CDS | 50.0% |
! | TGCCCTAAGAGGGCATACTA+AGG | + | chr5.3:24561387-24561406 | MS.gene58600:CDS | 50.0% |
!! | GGTGGGGTTGATGATGATGA+TGG | + | chr5.3:24561589-24561608 | MS.gene58600:CDS | 50.0% |
! | GTCCTAGTTGGTGCCCTAAG+AGG | + | chr5.3:24561376-24561395 | MS.gene58600:CDS | 55.0% |
GTCGGGGTCTTGGTCTAGTC+CGG | - | chr5.3:24561344-24561363 | None:intergenic | 60.0% | |
! | GCCCTCTTAGGGCACCAACT+AGG | - | chr5.3:24561381-24561400 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 24560332 | 24561687 | 24560332 | ID=MS.gene58600 |
chr5.3 | mRNA | 24560332 | 24561687 | 24560332 | ID=MS.gene58600.t1;Parent=MS.gene58600 |
chr5.3 | exon | 24560332 | 24561687 | 24560332 | ID=MS.gene58600.t1.exon1;Parent=MS.gene58600.t1 |
chr5.3 | CDS | 24560332 | 24561687 | 24560332 | ID=cds.MS.gene58600.t1;Parent=MS.gene58600.t1 |
Gene Sequence |
Protein sequence |