Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025758.t1 | XP_013453418.1 | 96.6 | 380 | 8 | 1 | 55 | 434 | 58 | 432 | 3.80E-194 | 687.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025758.t1 | Q8VYY4 | 63.9 | 374 | 125 | 4 | 58 | 424 | 33 | 403 | 1.1e-122 | 441.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025758.t1 | A0A072UCV8 | 96.6 | 380 | 8 | 1 | 55 | 434 | 58 | 432 | 2.8e-194 | 687.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene025758 | MS.gene038718 | PPI |
| MS.gene025758 | MS.gene060557 | PPI |
| MS.gene025758 | MS.gene036870 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025758.t1 | MTR_5g011440 | 92.788 | 416 | 21 | 2 | 19 | 434 | 26 | 432 | 0.0 | 721 |
| MS.gene025758.t1 | MTR_5g011440 | 92.788 | 416 | 21 | 2 | 19 | 434 | 19 | 425 | 0.0 | 719 |
| MS.gene025758.t1 | MTR_5g011440 | 92.288 | 389 | 21 | 2 | 19 | 407 | 26 | 405 | 0.0 | 663 |
| MS.gene025758.t1 | MTR_5g011450 | 79.811 | 317 | 64 | 0 | 104 | 420 | 1 | 317 | 0.0 | 509 |
| MS.gene025758.t1 | MTR_7g053090 | 40.453 | 309 | 170 | 5 | 119 | 424 | 97 | 394 | 9.24e-62 | 206 |
| MS.gene025758.t1 | MTR_4g113090 | 36.102 | 313 | 189 | 5 | 113 | 425 | 97 | 398 | 5.88e-53 | 182 |
| MS.gene025758.t1 | MTR_2g073190 | 32.903 | 310 | 198 | 4 | 123 | 432 | 382 | 681 | 8.13e-40 | 151 |
| MS.gene025758.t1 | MTR_2g073070 | 37.445 | 227 | 136 | 3 | 206 | 432 | 20 | 240 | 1.47e-36 | 134 |
| MS.gene025758.t1 | MTR_2g078500 | 66.265 | 83 | 27 | 1 | 147 | 229 | 37 | 118 | 1.94e-30 | 114 |
| MS.gene025758.t1 | MTR_2g078490 | 66.667 | 66 | 21 | 1 | 146 | 211 | 342 | 406 | 2.00e-19 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025758.t1 | AT4G22840 | 63.228 | 378 | 129 | 4 | 58 | 428 | 33 | 407 | 1.19e-163 | 467 |
| MS.gene025758.t1 | AT4G12030 | 58.333 | 384 | 154 | 2 | 49 | 427 | 25 | 407 | 7.27e-152 | 437 |
| MS.gene025758.t1 | AT4G12030 | 65.190 | 316 | 110 | 0 | 112 | 427 | 1 | 316 | 1.05e-149 | 428 |
| MS.gene025758.t1 | AT4G12030 | 67.407 | 270 | 88 | 0 | 155 | 424 | 1 | 270 | 2.44e-130 | 377 |
| MS.gene025758.t1 | AT4G12030 | 67.407 | 270 | 88 | 0 | 155 | 424 | 1 | 270 | 2.44e-130 | 377 |
| MS.gene025758.t1 | AT4G12030 | 67.407 | 270 | 88 | 0 | 155 | 424 | 1 | 270 | 2.44e-130 | 377 |
| MS.gene025758.t1 | AT3G25410 | 39.088 | 307 | 177 | 5 | 119 | 424 | 112 | 409 | 1.63e-60 | 203 |
| MS.gene025758.t1 | AT2G26900 | 33.770 | 382 | 226 | 9 | 43 | 423 | 40 | 395 | 3.10e-55 | 189 |
| MS.gene025758.t1 | AT1G78560 | 29.708 | 377 | 249 | 7 | 57 | 432 | 40 | 401 | 2.35e-45 | 162 |
Find 102 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATACTTTGCACCTGCTTT+AGG | 0.188507 | 5.3:+4969181 | MS.gene025758:intron |
| GTCAACTGCTTCTGCTGTTT+TGG | 0.219751 | 5.3:+4969686 | MS.gene025758:CDS |
| CTCTTATTGCTTCTGCTCAT+TGG | 0.278315 | 5.3:+4969717 | MS.gene025758:CDS |
| ATTATTGCAGTAACTGTCTT+TGG | 0.279697 | 5.3:+4969337 | MS.gene025758:CDS |
| TTTGTTGTGAAGCCTCTTCT+TGG | 0.285277 | 5.3:+4969301 | MS.gene025758:CDS |
| GATACTTTGCACCTGCTTTA+GGG | 0.306509 | 5.3:+4969182 | MS.gene025758:intron |
| ATTATGTCTTTGATGGGATT+TGG | 0.331570 | 5.3:+4970738 | MS.gene025758:CDS |
| ACTTCATTGAGGCATTTAAT+AGG | 0.332847 | 5.3:+4969245 | MS.gene025758:CDS |
| AGAAGCTGCATACTAATATT+AGG | 0.341587 | 5.3:-4968005 | None:intergenic |
| TCTTATTGCTTCTGCTCATT+GGG | 0.352000 | 5.3:+4969718 | MS.gene025758:CDS |
| GGGTATGCCTCCTGCAATTT+CGG | 0.354537 | 5.3:+4970314 | MS.gene025758:CDS |
| TGGGAATTTACCGAAATTGC+AGG | 0.366222 | 5.3:-4970324 | None:intergenic |
| GATGTCATTACTATGCTTAA+TGG | 0.367163 | 5.3:-4969660 | None:intergenic |
| GTATTGGTGGCTTGTGTTAG+TGG | 0.378566 | 5.3:+4969588 | MS.gene025758:CDS |
| TGCTTAATGGTGCCATTTGT+GGG | 0.389039 | 5.3:-4969647 | None:intergenic |
| CGTTGTAGTGGCTTTACATC+AGG | 0.390378 | 5.3:-4970133 | None:intergenic |
| GAATGATTCGGTGTCGGGTC+GGG | 0.403998 | 5.3:-4968184 | None:intergenic |
| ATGCTTAATGGTGCCATTTG+TGG | 0.405738 | 5.3:-4969648 | None:intergenic |
| GAGACGGAAGAGTGATGATT+GGG | 0.415254 | 5.3:-4967898 | None:intergenic |
| AGACTGCCTATAGACGTAAA+AGG | 0.420084 | 5.3:+4969744 | MS.gene025758:CDS |
| AGTGTACTAGCAACGATTGC+AGG | 0.421902 | 5.3:-4968811 | None:intergenic |
| AGCACATTTCAGAGGAAGTC+TGG | 0.422299 | 5.3:-4968128 | None:intergenic |
| TTTGGTCTACCAACAGGAAT+AGG | 0.423456 | 5.3:+4969355 | MS.gene025758:CDS |
| CTTTAACATGGTTTACTACA+AGG | 0.424128 | 5.3:+4968857 | MS.gene025758:CDS |
| GCCTCCACTCTCCGTGTTGA+CGG | 0.424878 | 5.3:+4969961 | MS.gene025758:CDS |
| CTGTTGGCCTACTTCTAAAT+CGG | 0.425947 | 5.3:+4969808 | MS.gene025758:CDS |
| GACTGCAATTATGTCTTTGA+TGG | 0.426712 | 5.3:+4970731 | MS.gene025758:intron |
| AGAAGTAGGCCAACAGCAAT+AGG | 0.427037 | 5.3:-4969801 | None:intergenic |
| GAGAAGAATGATTCGGTGTC+GGG | 0.431370 | 5.3:-4968189 | None:intergenic |
| AACAAACTGGCCAAAGTAAC+CGG | 0.432343 | 5.3:-4969284 | None:intergenic |
| GAAATCGCCACCGGTTACTT+TGG | 0.435378 | 5.3:+4969274 | MS.gene025758:CDS |
| GACAGAAAACTTTGCTTCAC+CGG | 0.450309 | 5.3:-4968748 | None:intergenic |
| TTCTTTGAAGATCCAGTTGT+GGG | 0.455510 | 5.3:+4970294 | MS.gene025758:CDS |
| TGCAGTTGCAGTTGCAGTAT+CGG | 0.461134 | 5.3:-4967920 | None:intergenic |
| AATTCTACCGATTTAGAAGT+AGG | 0.461585 | 5.3:-4969815 | None:intergenic |
| GCAGGAGGCATACCCACAAC+TGG | 0.468143 | 5.3:-4970306 | None:intergenic |
| ACTGTCTTTGGTCTACCAAC+AGG | 0.470666 | 5.3:+4969349 | MS.gene025758:CDS |
| CATTAGCGTCGTACAGTGGT+GGG | 0.481741 | 5.3:-4968214 | None:intergenic |
| CATTTCTCACCTATTCCTGT+TGG | 0.482415 | 5.3:-4969364 | None:intergenic |
| CGAACAATTTCCTTTGAGAC+AGG | 0.483447 | 5.3:+4970154 | MS.gene025758:CDS |
| GGAGACGGAAGAGTGATGAT+TGG | 0.484237 | 5.3:-4967899 | None:intergenic |
| TGGGGTCAATTCAAGTGAAA+AGG | 0.486568 | 5.3:+4969222 | MS.gene025758:CDS |
| AAGGAAATTGTTCGTTGTAG+TGG | 0.486811 | 5.3:-4970145 | None:intergenic |
| GAAGAGGCTTCACAACAAAC+TGG | 0.490918 | 5.3:-4969297 | None:intergenic |
| CATCTTCATCTTCATCACTC+TGG | 0.492287 | 5.3:-4967862 | None:intergenic |
| TAACCGGTGGCGATTTCTGC+CGG | 0.496289 | 5.3:-4969268 | None:intergenic |
| TTGACGGCAGCTATCTGTGC+TGG | 0.506226 | 5.3:+4969977 | MS.gene025758:CDS |
| ACTGCAATTATGTCTTTGAT+GGG | 0.516372 | 5.3:+4970732 | MS.gene025758:CDS |
| CTTCATCTTCATCACTCTGG+TGG | 0.518483 | 5.3:-4967859 | None:intergenic |
| ATCAGGCGCAGGGATGGTAT+TGG | 0.520885 | 5.3:+4969572 | MS.gene025758:intron |
| ATAGCTGGCTATATGCTAAG+TGG | 0.521600 | 5.3:+4970091 | MS.gene025758:CDS |
| GCAAAGTAGCCTCCTTGCCT+TGG | 0.521783 | 5.3:+4970257 | MS.gene025758:CDS |
| GTGGTGGTACCTATTGCTGT+TGG | 0.523359 | 5.3:+4969792 | MS.gene025758:CDS |
| CGGGTCGGGTTGGTGAGAAT+CGG | 0.531942 | 5.3:-4968170 | None:intergenic |
| GTAAACCATGTTAAAGAAGG+TGG | 0.532077 | 5.3:-4968850 | None:intergenic |
| CACTCAACATTAAGAGCAAG+TGG | 0.538447 | 5.3:-4970004 | None:intergenic |
| GATTCGGTGTCGGGTCGGGT+TGG | 0.538982 | 5.3:-4968180 | None:intergenic |
| AGAATGATTCGGTGTCGGGT+CGG | 0.540212 | 5.3:-4968185 | None:intergenic |
| GTAGTAAACCATGTTAAAGA+AGG | 0.543231 | 5.3:-4968853 | None:intergenic |
| GGTGGGAAGTTTGAATGCAA+AGG | 0.543981 | 5.3:-4967984 | None:intergenic |
| GCAACAAGATAGAAATTCCA+AGG | 0.546255 | 5.3:-4970039 | None:intergenic |
| TAAAACAGATATCCAAGAAG+AGG | 0.547296 | 5.3:-4969313 | None:intergenic |
| CATTGAGGCATTTAATAGGC+CGG | 0.551828 | 5.3:+4969249 | MS.gene025758:CDS |
| GCCTATAGACGTAAAAGGAA+TGG | 0.559133 | 5.3:+4969749 | MS.gene025758:CDS |
| TGAGAAGAATGATTCGGTGT+CGG | 0.559195 | 5.3:-4968190 | None:intergenic |
| TGAATGCAAAGGAATTGAGA+AGG | 0.560009 | 5.3:-4967973 | None:intergenic |
| GTGAGAATCGGAGAAGTTCG+TGG | 0.561447 | 5.3:-4968158 | None:intergenic |
| AGGCGCAGGGATGGTATTGG+TGG | 0.562527 | 5.3:+4969575 | MS.gene025758:intron |
| TCTTCCCACCTTCTTTAACA+TGG | 0.564423 | 5.3:+4968845 | MS.gene025758:CDS |
| GTTCTTTGAAGATCCAGTTG+TGG | 0.577808 | 5.3:+4970293 | MS.gene025758:CDS |
| TCATTAGCGTCGTACAGTGG+TGG | 0.578045 | 5.3:-4968215 | None:intergenic |
| AAATGAATCAGGCGCAGGGA+TGG | 0.579253 | 5.3:+4969566 | MS.gene025758:intron |
| TATAAAAGCTGACAAATGAA+AGG | 0.582419 | 5.3:-4970071 | None:intergenic |
| TGCAGTTGCAGTATCGGAGA+CGG | 0.585284 | 5.3:-4967914 | None:intergenic |
| GTGGGGTGAGAAGAATGATT+CGG | 0.586579 | 5.3:-4968196 | None:intergenic |
| AAAACTTGTACCTGTCTCAA+AGG | 0.587271 | 5.3:-4970164 | None:intergenic |
| GCTGCCGTCAACACGGAGAG+TGG | 0.594383 | 5.3:-4969965 | None:intergenic |
| TAAACCATGTTAAAGAAGGT+GGG | 0.594566 | 5.3:-4968849 | None:intergenic |
| AGCTGCATACTAATATTAGG+TGG | 0.598399 | 5.3:-4968002 | None:intergenic |
| AAGTGAAAAGGACTTCATTG+AGG | 0.599086 | 5.3:+4969234 | MS.gene025758:CDS |
| GAGTGTATTAAATCTCCCCT+TGG | 0.603743 | 5.3:+4970022 | MS.gene025758:CDS |
| CAACAAGATAGAAATTCCAA+GGG | 0.607845 | 5.3:-4970038 | None:intergenic |
| GAACTTATTAGCAAGAGCCA+AGG | 0.624774 | 5.3:-4970274 | None:intergenic |
| CGAATAGCATTGCAAATACG+AGG | 0.626785 | 5.3:-4969929 | None:intergenic |
| GCCGTCAACACGGAGAGTGG+AGG | 0.627500 | 5.3:-4969962 | None:intergenic |
| GCTGCATACTAATATTAGGT+GGG | 0.627684 | 5.3:-4968001 | None:intergenic |
| GTTTAGCATTACACAGATTG+TGG | 0.628061 | 5.3:+4969773 | MS.gene025758:CDS |
| TATTAGCAAGAGCCAAGGCA+AGG | 0.628931 | 5.3:-4970269 | None:intergenic |
| ATTAGCGTCGTACAGTGGTG+GGG | 0.636150 | 5.3:-4968213 | None:intergenic |
| GATGAAGCAGCACATTTCAG+AGG | 0.638965 | 5.3:-4968136 | None:intergenic |
| GGTGAAATGAATCAGGCGCA+GGG | 0.644484 | 5.3:+4969562 | MS.gene025758:intron |
| TAGCATTACACAGATTGTGG+TGG | 0.644972 | 5.3:+4969776 | MS.gene025758:CDS |
| GAATTTACCGAAATTGCAGG+AGG | 0.656389 | 5.3:-4970321 | None:intergenic |
| AGACGGAAGAGTGATGATTG+GGG | 0.664923 | 5.3:-4967897 | None:intergenic |
| ACAGATAGCTGCCGTCAACA+CGG | 0.673704 | 5.3:-4969972 | None:intergenic |
| ATGAGCAGAAGCAATAAGAG+TGG | 0.680286 | 5.3:-4969714 | None:intergenic |
| GTACTAGCAACGATTGCAGG+AGG | 0.690202 | 5.3:-4968808 | None:intergenic |
| AGGCCGGCAGAAATCGCCAC+CGG | 0.692344 | 5.3:+4969265 | MS.gene025758:CDS |
| TAGCAAGAGCCAAGGCAAGG+AGG | 0.692627 | 5.3:-4970266 | None:intergenic |
| GCTTTACATCAGGAGAATCG+CGG | 0.699620 | 5.3:-4970123 | None:intergenic |
| AAACTGGCCAAAGTAACCGG+TGG | 0.716656 | 5.3:-4969281 | None:intergenic |
| AACAAGATAGAAATTCCAAG+GGG | 0.741788 | 5.3:-4970037 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCTTAATTAGTATGAATT+AGG | + | chr5.3:4968283-4968302 | MS.gene025758:intron | 15.0% |
| !! | TTCTTAATTAGTATGAATTA+GGG | + | chr5.3:4968284-4968303 | MS.gene025758:intron | 15.0% |
| !! | TTGTTATATTGAAATATAAG+TGG | + | chr5.3:4970693-4970712 | MS.gene025758:intron | 15.0% |
| !! | AGAGTTACTTAAATAACATA+TGG | - | chr5.3:4970220-4970239 | None:intergenic | 20.0% |
| !! | ATTTGTTTGATAGATGAAAA+TGG | - | chr5.3:4970192-4970211 | None:intergenic | 20.0% |
| !! | TCTTAATTAGTATGAATTAG+GGG | + | chr5.3:4968285-4968304 | MS.gene025758:intron | 20.0% |
| !!! | AAATGCAAAGTTATTGTTTT+TGG | + | chr5.3:4970561-4970580 | MS.gene025758:intron | 20.0% |
| !!! | AAATTATGCTACTTTTCTAA+CGG | + | chr5.3:4969623-4969642 | MS.gene025758:CDS | 20.0% |
| !!! | GTCAAATAAACTCTTTAAAA+TGG | + | chr5.3:4968605-4968624 | MS.gene025758:intron | 20.0% |
| !!! | TATATTTTCATTCTAATACG+AGG | - | chr5.3:4968257-4968276 | None:intergenic | 20.0% |
| ! | AAATAAAAACCAAGTAACGT+AGG | + | chr5.3:4968688-4968707 | MS.gene025758:intron | 25.0% |
| ! | AGTATTAGTGTTTCCTTTAA+GGG | + | chr5.3:4969866-4969885 | MS.gene025758:intron | 25.0% |
| ! | CAATAACAATTATATACCCT+GGG | + | chr5.3:4970362-4970381 | MS.gene025758:intron | 25.0% |
| ! | TATAAAAGCTGACAAATGAA+AGG | - | chr5.3:4970074-4970093 | None:intergenic | 25.0% |
| ! | TTACTTAAATAACATATGGC+AGG | - | chr5.3:4970216-4970235 | None:intergenic | 25.0% |
| ! | TTTAGTCAAATTTATGCCTT+CGG | - | chr5.3:4969496-4969515 | None:intergenic | 25.0% |
| ! | TTTGTGTTTCAGATATTAGT+AGG | - | chr5.3:4969081-4969100 | None:intergenic | 25.0% |
| !! | ATCTACTTTCTAACTTTTTG+AGG | + | chr5.3:4969541-4969560 | MS.gene025758:intron | 25.0% |
| !! | CTTTCAATCATCTTTTGTTA+TGG | + | chr5.3:4968476-4968495 | MS.gene025758:intron | 25.0% |
| !! | TGTGTATTTTCTAGATGAAT+TGG | + | chr5.3:4968882-4968901 | MS.gene025758:intron | 25.0% |
| !!! | ATCATCTTTTGTTATGGAAA+TGG | + | chr5.3:4968482-4968501 | MS.gene025758:intron | 25.0% |
| !!! | GTGCTTTTTTTTTTTCAGTT+CGG | + | chr5.3:4968086-4968105 | MS.gene025758:intron | 25.0% |
| !!! | TTTTTTTTTTTCAGTTCGGT+TGG | + | chr5.3:4968090-4968109 | MS.gene025758:intron | 25.0% |
| AAACACGGTCAAACTTAAAA+AGG | - | chr5.3:4969432-4969451 | None:intergenic | 30.0% | |
| AACAAGATAGAAATTCCAAG+GGG | - | chr5.3:4970040-4970059 | None:intergenic | 30.0% | |
| AATAAACCATGTTAAGCATC+TGG | - | chr5.3:4968532-4968551 | None:intergenic | 30.0% | |
| AATATTAGAAAGAGAGCTAG+CGG | + | chr5.3:4969517-4969536 | MS.gene025758:intron | 30.0% | |
| ACTGCAATTATGTCTTTGAT+GGG | + | chr5.3:4970732-4970751 | MS.gene025758:CDS | 30.0% | |
| AGAAGCTGCATACTAATATT+AGG | - | chr5.3:4968008-4968027 | None:intergenic | 30.0% | |
| ATAATTACTACGTGATGTAC+TGG | + | chr5.3:4969157-4969176 | MS.gene025758:intron | 30.0% | |
| ATGCAAATGCAAATGCAAAA+TGG | + | chr5.3:4969040-4969059 | MS.gene025758:intron | 30.0% | |
| ATTATGTCTTTGATGGGATT+TGG | + | chr5.3:4970738-4970757 | MS.gene025758:CDS | 30.0% | |
| ATTATTGCAGTAACTGTCTT+TGG | + | chr5.3:4969337-4969356 | MS.gene025758:CDS | 30.0% | |
| ATTGGAGTCTAATCAGAATT+GGG | - | chr5.3:4970346-4970365 | None:intergenic | 30.0% | |
| CAACAAGATAGAAATTCCAA+GGG | - | chr5.3:4970041-4970060 | None:intergenic | 30.0% | |
| CAGTATTAGTGTTTCCTTTA+AGG | + | chr5.3:4969865-4969884 | MS.gene025758:intron | 30.0% | |
| CCAATAACAATTATATACCC+TGG | + | chr5.3:4970361-4970380 | MS.gene025758:intron | 30.0% | |
| CCAGGGTATATAATTGTTAT+TGG | - | chr5.3:4970364-4970383 | None:intergenic | 30.0% | |
| CTTTAACATGGTTTACTACA+AGG | + | chr5.3:4968857-4968876 | MS.gene025758:CDS | 30.0% | |
| GATGTCATTACTATGCTTAA+TGG | - | chr5.3:4969663-4969682 | None:intergenic | 30.0% | |
| GTAGTAAACCATGTTAAAGA+AGG | - | chr5.3:4968856-4968875 | None:intergenic | 30.0% | |
| TAAAACAGATATCCAAGAAG+AGG | - | chr5.3:4969316-4969335 | None:intergenic | 30.0% | |
| TAAACCATGTTAAAGAAGGT+GGG | - | chr5.3:4968852-4968871 | None:intergenic | 30.0% | |
| TAAGAATACAACACCCTTAA+AGG | - | chr5.3:4969882-4969901 | None:intergenic | 30.0% | |
| TATTGGAGTCTAATCAGAAT+TGG | - | chr5.3:4970347-4970366 | None:intergenic | 30.0% | |
| ! | ACTTCATTGAGGCATTTAAT+AGG | + | chr5.3:4969245-4969264 | MS.gene025758:CDS | 30.0% |
| ! | GCATTTGCATTTGCATTTTA+AGG | - | chr5.3:4969036-4969055 | None:intergenic | 30.0% |
| !! | AATTCTACCGATTTAGAAGT+AGG | - | chr5.3:4969818-4969837 | None:intergenic | 30.0% |
| !! | GCATTTTAGTGAAATTGATC+TGG | + | chr5.3:4968939-4968958 | MS.gene025758:intron | 30.0% |
| !! | GTTTTGATATGGAACAAAAG+TGG | + | chr5.3:4970765-4970784 | MS.gene025758:CDS | 30.0% |
| !! | TCATGCAAACTTGTTTTCTA+TGG | + | chr5.3:4968628-4968647 | MS.gene025758:intron | 30.0% |
| !! | TTTTTGGTCAAGAAAGTAGA+AGG | + | chr5.3:4970577-4970596 | MS.gene025758:intron | 30.0% |
| !!! | GATTTGGTCTTGTTTTGATA+TGG | + | chr5.3:4970754-4970773 | MS.gene025758:CDS | 30.0% |
| !!! | TCAAGTGATTTTTAGCAATG+AGG | + | chr5.3:4968962-4968981 | MS.gene025758:intron | 30.0% |
| !!! | TTTTTGAGGTGAAATGAATC+AGG | + | chr5.3:4969555-4969574 | MS.gene025758:intron | 30.0% |
| AAAACTTGTACCTGTCTCAA+AGG | - | chr5.3:4970167-4970186 | None:intergenic | 35.0% | |
| AACATCAAAAACCCTAAAGC+AGG | - | chr5.3:4969196-4969215 | None:intergenic | 35.0% | |
| AACTCTTCATTGCAAACACA+CGG | + | chr5.3:4970509-4970528 | MS.gene025758:intron | 35.0% | |
| AAGGAAATTGTTCGTTGTAG+TGG | - | chr5.3:4970148-4970167 | None:intergenic | 35.0% | |
| AAGTGAAAAGGACTTCATTG+AGG | + | chr5.3:4969234-4969253 | MS.gene025758:CDS | 35.0% | |
| AGCTGCATACTAATATTAGG+TGG | - | chr5.3:4968005-4968024 | None:intergenic | 35.0% | |
| ATATTAGAAAGAGAGCTAGC+GGG | + | chr5.3:4969518-4969537 | MS.gene025758:intron | 35.0% | |
| GAATAGGTGAGAAATGAGAA+TGG | + | chr5.3:4969371-4969390 | MS.gene025758:intron | 35.0% | |
| GACTGCAATTATGTCTTTGA+TGG | + | chr5.3:4970731-4970750 | MS.gene025758:intron | 35.0% | |
| GCAACAAGATAGAAATTCCA+AGG | - | chr5.3:4970042-4970061 | None:intergenic | 35.0% | |
| GCTGCATACTAATATTAGGT+GGG | - | chr5.3:4968004-4968023 | None:intergenic | 35.0% | |
| GTAAACCATGTTAAAGAAGG+TGG | - | chr5.3:4968853-4968872 | None:intergenic | 35.0% | |
| GTTTAGCATTACACAGATTG+TGG | + | chr5.3:4969773-4969792 | MS.gene025758:CDS | 35.0% | |
| TCTTATTGCTTCTGCTCATT+GGG | + | chr5.3:4969718-4969737 | MS.gene025758:CDS | 35.0% | |
| TGAATGCAAAGGAATTGAGA+AGG | - | chr5.3:4967976-4967995 | None:intergenic | 35.0% | |
| TGCAGACACATACATATAGT+CGG | - | chr5.3:4970431-4970450 | None:intergenic | 35.0% | |
| TTTACACCAGATGCTTAACA+TGG | + | chr5.3:4968523-4968542 | MS.gene025758:intron | 35.0% | |
| ! | ACCATTCCTTTTACGTCTAT+AGG | - | chr5.3:4969753-4969772 | None:intergenic | 35.0% |
| ! | CATTTGTCAGCTTTTATAGC+TGG | + | chr5.3:4970076-4970095 | MS.gene025758:CDS | 35.0% |
| ! | GGTTTTTGATGTTTGCAGTT+GGG | + | chr5.3:4969203-4969222 | MS.gene025758:CDS | 35.0% |
| ! | GTTTTTGATGTTTGCAGTTG+GGG | + | chr5.3:4969204-4969223 | MS.gene025758:CDS | 35.0% |
| ! | TTCTTTGAAGATCCAGTTGT+GGG | + | chr5.3:4970294-4970313 | MS.gene025758:CDS | 35.0% |
| ! | TTTAAGTTTGACCGTGTTTC+TGG | + | chr5.3:4969433-4969452 | MS.gene025758:intron | 35.0% |
| !! | TAAGCTGTTTTCGTAAGTTC+CGG | - | chr5.3:4968364-4968383 | None:intergenic | 35.0% |
| !!! | TTTTTTTTCAGTTCGGTTGG+CGG | + | chr5.3:4968093-4968112 | MS.gene025758:intron | 35.0% |
| AACAAACTGGCCAAAGTAAC+CGG | - | chr5.3:4969287-4969306 | None:intergenic | 40.0% | |
| AAGCATCTGGTGTAAAATGC+AGG | - | chr5.3:4968519-4968538 | None:intergenic | 40.0% | |
| ACTTGTGTGAGATTGTTTGC+CGG | + | chr5.3:4968342-4968361 | MS.gene025758:intron | 40.0% | |
| AGACTGCCTATAGACGTAAA+AGG | + | chr5.3:4969744-4969763 | MS.gene025758:CDS | 40.0% | |
| AGATACTTTGCACCTGCTTT+AGG | + | chr5.3:4969181-4969200 | MS.gene025758:intron | 40.0% | |
| AGTGCTTATGTCTTCAGGTA+AGG | + | chr5.3:4968583-4968602 | MS.gene025758:intron | 40.0% | |
| ATAGCTGGCTATATGCTAAG+TGG | + | chr5.3:4970091-4970110 | MS.gene025758:CDS | 40.0% | |
| ATGAGCAGAAGCAATAAGAG+TGG | - | chr5.3:4969717-4969736 | None:intergenic | 40.0% | |
| CAATCATGTCCTACGTTACT+TGG | - | chr5.3:4968700-4968719 | None:intergenic | 40.0% | |
| CACTCAACATTAAGAGCAAG+TGG | - | chr5.3:4970007-4970026 | None:intergenic | 40.0% | |
| CATCTTCATCTTCATCACTC+TGG | - | chr5.3:4967865-4967884 | None:intergenic | 40.0% | |
| CATTTCTCACCTATTCCTGT+TGG | - | chr5.3:4969367-4969386 | None:intergenic | 40.0% | |
| CCAGAACTAATCCAGAAACA+CGG | - | chr5.3:4969447-4969466 | None:intergenic | 40.0% | |
| CGAATAGCATTGCAAATACG+AGG | - | chr5.3:4969932-4969951 | None:intergenic | 40.0% | |
| CTAGATGACTAGATAAGAGC+TGG | - | chr5.3:4968996-4969015 | None:intergenic | 40.0% | |
| CTCTTATTGCTTCTGCTCAT+TGG | + | chr5.3:4969717-4969736 | MS.gene025758:CDS | 40.0% | |
| GAACTTATTAGCAAGAGCCA+AGG | - | chr5.3:4970277-4970296 | None:intergenic | 40.0% | |
| GAATTTACCGAAATTGCAGG+AGG | - | chr5.3:4970324-4970343 | None:intergenic | 40.0% | |
| GACAGAAAACTTTGCTTCAC+CGG | - | chr5.3:4968751-4968770 | None:intergenic | 40.0% | |
| GAGTAAGTGCTTATGTCTTC+AGG | + | chr5.3:4968578-4968597 | MS.gene025758:intron | 40.0% | |
| GAGTGTATTAAATCTCCCCT+TGG | + | chr5.3:4970022-4970041 | MS.gene025758:CDS | 40.0% | |
| GATACTTTGCACCTGCTTTA+GGG | + | chr5.3:4969182-4969201 | MS.gene025758:intron | 40.0% | |
| GCCTATAGACGTAAAAGGAA+TGG | + | chr5.3:4969749-4969768 | MS.gene025758:CDS | 40.0% | |
| GGTTTATTACCTCGTTGTGT+TGG | + | chr5.3:4970537-4970556 | MS.gene025758:intron | 40.0% | |
| GTCAAATTTATGCCTTCGGT+CGG | - | chr5.3:4969492-4969511 | None:intergenic | 40.0% | |
| GTTTCATTTCTTTCCTCAGC+CGG | + | chr5.3:4968729-4968748 | MS.gene025758:intron | 40.0% | |
| TAGCATTACACAGATTGTGG+TGG | + | chr5.3:4969776-4969795 | MS.gene025758:CDS | 40.0% | |
| TCTTCCCACCTTCTTTAACA+TGG | + | chr5.3:4968845-4968864 | MS.gene025758:CDS | 40.0% | |
| TGGGAATTTACCGAAATTGC+AGG | - | chr5.3:4970327-4970346 | None:intergenic | 40.0% | |
| TGGGGTCAATTCAAGTGAAA+AGG | + | chr5.3:4969222-4969241 | MS.gene025758:CDS | 40.0% | |
| TTAAGTTTCTAACCGACCGA+AGG | + | chr5.3:4969477-4969496 | MS.gene025758:intron | 40.0% | |
| TTTGGTCTACCAACAGGAAT+AGG | + | chr5.3:4969355-4969374 | MS.gene025758:CDS | 40.0% | |
| ! | CATTGAGGCATTTAATAGGC+CGG | + | chr5.3:4969249-4969268 | MS.gene025758:CDS | 40.0% |
| ! | CTGTTGGCCTACTTCTAAAT+CGG | + | chr5.3:4969808-4969827 | MS.gene025758:CDS | 40.0% |
| ! | GGGTTTTTGATGTTTGCAGT+TGG | + | chr5.3:4969202-4969221 | MS.gene025758:CDS | 40.0% |
| ! | GTTCTTTGAAGATCCAGTTG+TGG | + | chr5.3:4970293-4970312 | MS.gene025758:CDS | 40.0% |
| ! | TTGCATTTTCCAACACAACG+AGG | - | chr5.3:4970549-4970568 | None:intergenic | 40.0% |
| ! | TTTGTTGTGAAGCCTCTTCT+TGG | + | chr5.3:4969301-4969320 | MS.gene025758:CDS | 40.0% |
| !! | ATGCTTAATGGTGCCATTTG+TGG | - | chr5.3:4969651-4969670 | None:intergenic | 40.0% |
| !! | CGAACAATTTCCTTTGAGAC+AGG | + | chr5.3:4970154-4970173 | MS.gene025758:CDS | 40.0% |
| !! | TGAGAAGAATGATTCGGTGT+CGG | - | chr5.3:4968193-4968212 | None:intergenic | 40.0% |
| !! | TGCTTAATGGTGCCATTTGT+GGG | - | chr5.3:4969650-4969669 | None:intergenic | 40.0% |
| !! | TTTTCTAACGGACCCACAAA+TGG | + | chr5.3:4969635-4969654 | MS.gene025758:CDS | 40.0% |
| ACTGTCTTTGGTCTACCAAC+AGG | + | chr5.3:4969349-4969368 | MS.gene025758:CDS | 45.0% | |
| AGAAGTAGGCCAACAGCAAT+AGG | - | chr5.3:4969804-4969823 | None:intergenic | 45.0% | |
| AGACGGAAGAGTGATGATTG+GGG | - | chr5.3:4967900-4967919 | None:intergenic | 45.0% | |
| AGCACATTTCAGAGGAAGTC+TGG | - | chr5.3:4968131-4968150 | None:intergenic | 45.0% | |
| AGTAACTCTTCTCCAACTGC+AGG | + | chr5.3:4970231-4970250 | MS.gene025758:intron | 45.0% | |
| AGTGTACTAGCAACGATTGC+AGG | - | chr5.3:4968814-4968833 | None:intergenic | 45.0% | |
| CAAGAACGCTTATACTCCCA+GGG | - | chr5.3:4970381-4970400 | None:intergenic | 45.0% | |
| CATTGCAAACACACGGCATT+GGG | + | chr5.3:4970516-4970535 | MS.gene025758:intron | 45.0% | |
| CTACTTTGCATTCCTGCAGT+TGG | - | chr5.3:4970246-4970265 | None:intergenic | 45.0% | |
| CTTCATCTTCATCACTCTGG+TGG | - | chr5.3:4967862-4967881 | None:intergenic | 45.0% | |
| GAAGAGGCTTCACAACAAAC+TGG | - | chr5.3:4969300-4969319 | None:intergenic | 45.0% | |
| GAGACGGAAGAGTGATGATT+GGG | - | chr5.3:4967901-4967920 | None:intergenic | 45.0% | |
| GATGAAGCAGCACATTTCAG+AGG | - | chr5.3:4968139-4968158 | None:intergenic | 45.0% | |
| GCTTTACATCAGGAGAATCG+CGG | - | chr5.3:4970126-4970145 | None:intergenic | 45.0% | |
| GGTGGGAAGTTTGAATGCAA+AGG | - | chr5.3:4967987-4968006 | None:intergenic | 45.0% | |
| GTGGGGTGAGAAGAATGATT+CGG | - | chr5.3:4968199-4968218 | None:intergenic | 45.0% | |
| TATTAGCAAGAGCCAAGGCA+AGG | - | chr5.3:4970272-4970291 | None:intergenic | 45.0% | |
| TCAAGAACGCTTATACTCCC+AGG | - | chr5.3:4970382-4970401 | None:intergenic | 45.0% | |
| TCATTGCAAACACACGGCAT+TGG | + | chr5.3:4970515-4970534 | MS.gene025758:intron | 45.0% | |
| TGATCATTAGCGTCGTACAG+TGG | - | chr5.3:4968221-4968240 | None:intergenic | 45.0% | |
| TGCAGTTGCAGTTGCAGTAT+CGG | - | chr5.3:4967923-4967942 | None:intergenic | 45.0% | |
| ! | CGTTGTAGTGGCTTTACATC+AGG | - | chr5.3:4970136-4970155 | None:intergenic | 45.0% |
| ! | GTATTGGTGGCTTGTGTTAG+TGG | + | chr5.3:4969588-4969607 | MS.gene025758:CDS | 45.0% |
| !! | CCGTGTTTCTGGATTAGTTC+TGG | + | chr5.3:4969444-4969463 | MS.gene025758:intron | 45.0% |
| !! | GAGAAGAATGATTCGGTGTC+GGG | - | chr5.3:4968192-4968211 | None:intergenic | 45.0% |
| !! | GTCAACTGCTTCTGCTGTTT+TGG | + | chr5.3:4969686-4969705 | MS.gene025758:CDS | 45.0% |
| !! | TAGTAATTATAATAAATTAA+TGG | - | chr5.3:4969147-4969166 | None:intergenic | 5.0% |
| AAACTGGCCAAAGTAACCGG+TGG | - | chr5.3:4969284-4969303 | None:intergenic | 50.0% | |
| AAATGAATCAGGCGCAGGGA+TGG | + | chr5.3:4969566-4969585 | MS.gene025758:intron | 50.0% | |
| ACAGATAGCTGCCGTCAACA+CGG | - | chr5.3:4969975-4969994 | None:intergenic | 50.0% | |
| ACGGAGAGTGGAGGCAAAAA+TGG | - | chr5.3:4969956-4969975 | None:intergenic | 50.0% | |
| AGGTGAAATGAATCAGGCGC+AGG | + | chr5.3:4969561-4969580 | MS.gene025758:intron | 50.0% | |
| ATTAGCGTCGTACAGTGGTG+GGG | - | chr5.3:4968216-4968235 | None:intergenic | 50.0% | |
| CATTAGCGTCGTACAGTGGT+GGG | - | chr5.3:4968217-4968236 | None:intergenic | 50.0% | |
| GGAGACGGAAGAGTGATGAT+TGG | - | chr5.3:4967902-4967921 | None:intergenic | 50.0% | |
| GGGTATGCCTCCTGCAATTT+CGG | + | chr5.3:4970314-4970333 | MS.gene025758:CDS | 50.0% | |
| GGTGAAATGAATCAGGCGCA+GGG | + | chr5.3:4969562-4969581 | MS.gene025758:intron | 50.0% | |
| GTACTAGCAACGATTGCAGG+AGG | - | chr5.3:4968811-4968830 | None:intergenic | 50.0% | |
| GTGAGAATCGGAGAAGTTCG+TGG | - | chr5.3:4968161-4968180 | None:intergenic | 50.0% | |
| GTGGTGGTACCTATTGCTGT+TGG | + | chr5.3:4969792-4969811 | MS.gene025758:CDS | 50.0% | |
| TCATTAGCGTCGTACAGTGG+TGG | - | chr5.3:4968218-4968237 | None:intergenic | 50.0% | |
| ! | AAACTTTGCTTCACCGGCTG+AGG | - | chr5.3:4968745-4968764 | None:intergenic | 50.0% |
| ! | GAAATCGCCACCGGTTACTT+TGG | + | chr5.3:4969274-4969293 | MS.gene025758:CDS | 50.0% |
| ! | TGCAGTTGCAGTATCGGAGA+CGG | - | chr5.3:4967917-4967936 | None:intergenic | 50.0% |
| !! | AGAATGATTCGGTGTCGGGT+CGG | - | chr5.3:4968188-4968207 | None:intergenic | 50.0% |
| !! | TTTTTCAGTTCGGTTGGCGG+TGG | + | chr5.3:4968096-4968115 | MS.gene025758:intron | 50.0% |
| ATCAGGCGCAGGGATGGTAT+TGG | + | chr5.3:4969572-4969591 | MS.gene025758:intron | 55.0% | |
| GCAAAGTAGCCTCCTTGCCT+TGG | + | chr5.3:4970257-4970276 | MS.gene025758:CDS | 55.0% | |
| TAACCGGTGGCGATTTCTGC+CGG | - | chr5.3:4969271-4969290 | None:intergenic | 55.0% | |
| TAGCAAGAGCCAAGGCAAGG+AGG | - | chr5.3:4970269-4970288 | None:intergenic | 55.0% | |
| TTGACGGCAGCTATCTGTGC+TGG | + | chr5.3:4969977-4969996 | MS.gene025758:CDS | 55.0% | |
| !! | GAATGATTCGGTGTCGGGTC+GGG | - | chr5.3:4968187-4968206 | None:intergenic | 55.0% |
| GCCTCCACTCTCCGTGTTGA+CGG | + | chr5.3:4969961-4969980 | MS.gene025758:CDS | 60.0% | |
| ! | AGGCGCAGGGATGGTATTGG+TGG | + | chr5.3:4969575-4969594 | MS.gene025758:intron | 60.0% |
| ! | GCAGGAGGCATACCCACAAC+TGG | - | chr5.3:4970309-4970328 | None:intergenic | 60.0% |
| !! | CGGGTCGGGTTGGTGAGAAT+CGG | - | chr5.3:4968173-4968192 | None:intergenic | 60.0% |
| AGGCCGGCAGAAATCGCCAC+CGG | + | chr5.3:4969265-4969284 | MS.gene025758:CDS | 65.0% | |
| GCCGTCAACACGGAGAGTGG+AGG | - | chr5.3:4969965-4969984 | None:intergenic | 65.0% | |
| GCTGCCGTCAACACGGAGAG+TGG | - | chr5.3:4969968-4969987 | None:intergenic | 65.0% | |
| !! | GATTCGGTGTCGGGTCGGGT+TGG | - | chr5.3:4968183-4968202 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 4967828 | 4970815 | 4967828 | ID=MS.gene025758 |
| chr5.3 | mRNA | 4967828 | 4970815 | 4967828 | ID=MS.gene025758.t1;Parent=MS.gene025758 |
| chr5.3 | exon | 4967828 | 4968014 | 4967828 | ID=MS.gene025758.t1.exon1;Parent=MS.gene025758.t1 |
| chr5.3 | CDS | 4967828 | 4968014 | 4967828 | ID=cds.MS.gene025758.t1;Parent=MS.gene025758.t1 |
| chr5.3 | exon | 4968104 | 4968222 | 4968104 | ID=MS.gene025758.t1.exon2;Parent=MS.gene025758.t1 |
| chr5.3 | CDS | 4968104 | 4968222 | 4968104 | ID=cds.MS.gene025758.t1;Parent=MS.gene025758.t1 |
| chr5.3 | exon | 4968748 | 4968878 | 4968748 | ID=MS.gene025758.t1.exon3;Parent=MS.gene025758.t1 |
| chr5.3 | CDS | 4968748 | 4968878 | 4968748 | ID=cds.MS.gene025758.t1;Parent=MS.gene025758.t1 |
| chr5.3 | exon | 4969183 | 4969376 | 4969183 | ID=MS.gene025758.t1.exon4;Parent=MS.gene025758.t1 |
| chr5.3 | CDS | 4969183 | 4969376 | 4969183 | ID=cds.MS.gene025758.t1;Parent=MS.gene025758.t1 |
| chr5.3 | exon | 4969577 | 4969829 | 4969577 | ID=MS.gene025758.t1.exon5;Parent=MS.gene025758.t1 |
| chr5.3 | CDS | 4969577 | 4969829 | 4969577 | ID=cds.MS.gene025758.t1;Parent=MS.gene025758.t1 |
| chr5.3 | exon | 4969922 | 4970175 | 4969922 | ID=MS.gene025758.t1.exon6;Parent=MS.gene025758.t1 |
| chr5.3 | CDS | 4969922 | 4970175 | 4969922 | ID=cds.MS.gene025758.t1;Parent=MS.gene025758.t1 |
| chr5.3 | exon | 4970253 | 4970335 | 4970253 | ID=MS.gene025758.t1.exon7;Parent=MS.gene025758.t1 |
| chr5.3 | CDS | 4970253 | 4970335 | 4970253 | ID=cds.MS.gene025758.t1;Parent=MS.gene025758.t1 |
| chr5.3 | exon | 4970732 | 4970815 | 4970732 | ID=MS.gene025758.t1.exon8;Parent=MS.gene025758.t1 |
| chr5.3 | CDS | 4970732 | 4970815 | 4970732 | ID=cds.MS.gene025758.t1;Parent=MS.gene025758.t1 |
| Gene Sequence |
| Protein sequence |
