Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026843.t1 | RHN74953.1 | 98.8 | 568 | 7 | 0 | 1 | 568 | 1 | 568 | 0.00E+00 | 1122.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026843.t1 | Q9FZ49 | 72.7 | 571 | 152 | 2 | 1 | 568 | 1 | 570 | 6.1e-249 | 861.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026843.t1 | A0A396JF94 | 98.8 | 568 | 7 | 0 | 1 | 568 | 1 | 568 | 0.0e+00 | 1122.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056676 | MS.gene026843 | PPI |
| MS.gene45709 | MS.gene026843 | PPI |
| MS.gene069988 | MS.gene026843 | PPI |
| MS.gene003786 | MS.gene026843 | PPI |
| MS.gene50052 | MS.gene026843 | PPI |
| MS.gene064868 | MS.gene026843 | PPI |
| MS.gene014312 | MS.gene026843 | PPI |
| MS.gene66827 | MS.gene026843 | PPI |
| MS.gene014310 | MS.gene026843 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026843.t1 | MTR_2g076680 | 98.592 | 568 | 8 | 0 | 1 | 568 | 1 | 568 | 0.0 | 1142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026843.t1 | AT1G16900 | 72.855 | 571 | 151 | 2 | 1 | 568 | 1 | 570 | 0.0 | 838 |
Find 117 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGTTGCTGTTTCTGCTAT+TGG | 0.219264 | 2.4:-20893457 | MS.gene026843:CDS |
| AAATTCAAACAGGCATTTAT+TGG | 0.223315 | 2.4:-20893367 | MS.gene026843:CDS |
| TGTTCTTGCTATGCTGTTCT+TGG | 0.229117 | 2.4:-20892832 | MS.gene026843:CDS |
| CCACCTAGGGTAGAATTAAA+TGG | 0.242901 | 2.4:+20890105 | None:intergenic |
| TATGCTGTGAGATTCTTTCT+TGG | 0.247470 | 2.4:-20893901 | MS.gene026843:CDS |
| ACTATAACTATTATGGAAAA+TGG | 0.250286 | 2.4:-20892977 | MS.gene026843:CDS |
| CGAACTTGTCCCACAAAATC+TGG | 0.277414 | 2.4:+20890165 | None:intergenic |
| AACCACCGGCCTCAGAAATT+TGG | 0.286042 | 2.4:+20891316 | None:intergenic |
| TGATATCTCCTTTATACATT+TGG | 0.294318 | 2.4:-20892761 | MS.gene026843:CDS |
| GTTACTGACTATAACTATTA+TGG | 0.296108 | 2.4:-20892984 | MS.gene026843:CDS |
| CCACTATTTCATGAAATAAA+AGG | 0.307405 | 2.4:+20894068 | None:intergenic |
| GTAAAGATGAAGGGTTAAAA+TGG | 0.322168 | 2.4:-20896086 | MS.gene026843:CDS |
| CGATGGATTGATGATGGTTT+CGG | 0.330104 | 2.4:-20890144 | MS.gene026843:CDS |
| GTATGCAATCTCTCTTGCTT+CGG | 0.332002 | 2.4:-20893509 | MS.gene026843:CDS |
| TGGCTGGCCATTCTCAATCT+TGG | 0.338326 | 2.4:-20893425 | MS.gene026843:CDS |
| ATGTTCTTGTTGTTAAAGTA+TGG | 0.342295 | 2.4:+20890066 | None:intergenic |
| TATTGCTGCATTACCATATC+TGG | 0.343713 | 2.4:-20888494 | MS.gene026843:CDS |
| GGTTTCAAACTTGGGAATAT+AGG | 0.344219 | 2.4:-20895942 | MS.gene026843:intron |
| TATGCAATCTCTCTTGCTTC+GGG | 0.358298 | 2.4:-20893508 | MS.gene026843:CDS |
| GTAGCTATTTCAAGAAAGTA+TGG | 0.360159 | 2.4:-20893844 | MS.gene026843:CDS |
| CGACCAGCTTTGTGGGTGTT+TGG | 0.360996 | 2.4:-20894043 | MS.gene026843:CDS |
| ATAAAACTGGGTTTCAAACT+TGG | 0.375504 | 2.4:-20895951 | MS.gene026843:CDS |
| AAAATCTTGTAAATCTCAAT+AGG | 0.384616 | 2.4:+20891230 | None:intergenic |
| CCGGTTAAATAGAATCATTT+CGG | 0.385136 | 2.4:+20888373 | None:intergenic |
| GAATATTTCTTCTTAGCAAT+AGG | 0.395061 | 2.4:+20892801 | None:intergenic |
| CAGGTTCTGTACTTTGTGTT+GGG | 0.400534 | 2.4:-20890224 | MS.gene026843:CDS |
| ACACAAATAAGTGGATATAC+TGG | 0.407458 | 2.4:+20891520 | None:intergenic |
| GCTCGACAAAGCGTCGAAAT+CGG | 0.410774 | 2.4:-20896112 | MS.gene026843:CDS |
| CCGAACCTTTCTTCTTTATG+TGG | 0.413167 | 2.4:+20892717 | None:intergenic |
| AAAGCCAGCCAAATGTATAA+AGG | 0.418152 | 2.4:+20892753 | None:intergenic |
| TGAGAGCGTCTACGTCTTGT+TGG | 0.419732 | 2.4:+20896177 | None:intergenic |
| AGCTTTCACCAGCTTTGTAT+AGG | 0.420983 | 2.4:-20888465 | MS.gene026843:CDS |
| GCAGGTTCTGTACTTTGTGT+TGG | 0.422829 | 2.4:-20890225 | MS.gene026843:intron |
| GTTCTTGCTATGCTGTTCTT+GGG | 0.423743 | 2.4:-20892831 | MS.gene026843:CDS |
| TACTTGTCACGGAAAAGATC+AGG | 0.428030 | 2.4:+20891469 | None:intergenic |
| TACTTTGTGTTGGGAGTGAA+TGG | 0.433620 | 2.4:-20890215 | MS.gene026843:CDS |
| CAAGTTCGATGGATTGATGA+TGG | 0.437641 | 2.4:-20890150 | MS.gene026843:CDS |
| ATCTCCTTTATACATTTGGC+TGG | 0.441016 | 2.4:-20892757 | MS.gene026843:CDS |
| TCTGCTATTGGTGTGAAACT+TGG | 0.446911 | 2.4:-20893445 | MS.gene026843:CDS |
| CTCTCAGCCGTCGGATCCAC+CGG | 0.449738 | 2.4:-20896160 | MS.gene026843:CDS |
| GCAGTTCACAGTTTGCTCTT+CGG | 0.450028 | 2.4:-20894102 | MS.gene026843:intron |
| TCTATATATAAAATTCAAAC+AGG | 0.456683 | 2.4:-20893377 | MS.gene026843:CDS |
| GAAAGCTCCCTATCCAGATA+TGG | 0.459908 | 2.4:+20888481 | None:intergenic |
| CACCTAGGGTAGAATTAAAT+GGG | 0.461526 | 2.4:+20890106 | None:intergenic |
| TAGTGGCTCGACCAGCTTTG+TGG | 0.464263 | 2.4:-20894051 | MS.gene026843:CDS |
| GGCGGTGAAAGTCATCTGTA+TGG | 0.465884 | 2.4:-20892912 | MS.gene026843:CDS |
| ATAAGTCACTTCCACGGGTC+AGG | 0.467445 | 2.4:+20888609 | None:intergenic |
| GATATCACAATAAGTAGGTC+TGG | 0.468052 | 2.4:+20892777 | None:intergenic |
| TTCCCATTTAATTCTACCCT+AGG | 0.470224 | 2.4:-20890108 | MS.gene026843:CDS |
| TGCAGCCACATAAAGAAGAA+AGG | 0.475976 | 2.4:-20892722 | MS.gene026843:intron |
| CTGCATTACCATATCTGGAT+AGG | 0.477599 | 2.4:-20888489 | MS.gene026843:CDS |
| TATAGAGAATAAAGTGTCAC+TGG | 0.484919 | 2.4:+20893394 | None:intergenic |
| TAAAGATGAAGGGTTAAAAT+GGG | 0.485417 | 2.4:-20896085 | MS.gene026843:CDS |
| AGTGGCTCGACCAGCTTTGT+GGG | 0.488898 | 2.4:-20894050 | MS.gene026843:CDS |
| GCATACATGGAAAACGAACT+TGG | 0.489829 | 2.4:+20893526 | None:intergenic |
| CTTCTAATATACAACGTAGC+TGG | 0.490932 | 2.4:-20892936 | MS.gene026843:CDS |
| AGCAAGAGAGATTGCATACA+TGG | 0.491027 | 2.4:+20893513 | None:intergenic |
| GTGCTGCAGCAGTCCCACCT+AGG | 0.491314 | 2.4:+20890091 | None:intergenic |
| TAAAACTGGGTTTCAAACTT+GGG | 0.494518 | 2.4:-20895950 | MS.gene026843:CDS |
| AAGTGCAGGCATCGATATCA+TGG | 0.494904 | 2.4:+20888663 | None:intergenic |
| CATTTAATTCTACCCTAGGT+GGG | 0.497811 | 2.4:-20890104 | MS.gene026843:CDS |
| TCAAACAGGCATTTATTGGT+GGG | 0.504596 | 2.4:-20893363 | MS.gene026843:CDS |
| TTCAAACAGGCATTTATTGG+TGG | 0.505934 | 2.4:-20893364 | MS.gene026843:CDS |
| CTATTGGTGTGAAACTTGGC+TGG | 0.506924 | 2.4:-20893441 | MS.gene026843:CDS |
| TGACACTTCTTTAATAGTGA+AGG | 0.517173 | 2.4:-20891437 | MS.gene026843:intron |
| TCACTTCCACGGGTCAGGTA+AGG | 0.519854 | 2.4:+20888614 | None:intergenic |
| AAATCGGACGGTAAAGATGA+AGG | 0.519968 | 2.4:-20896096 | MS.gene026843:CDS |
| GAAGCAGCAACACAAATAAG+TGG | 0.523684 | 2.4:+20891511 | None:intergenic |
| CAGCTCGACGAGGAAAGTGC+AGG | 0.528901 | 2.4:+20888649 | None:intergenic |
| TGTAAATCTCAATAGGAGCT+TGG | 0.532733 | 2.4:+20891237 | None:intergenic |
| AGAAAAGCCAAGATTGAGAA+TGG | 0.534930 | 2.4:+20893418 | None:intergenic |
| CACCACGACGATGTAGCAAA+TGG | 0.535604 | 2.4:-20891203 | MS.gene026843:intron |
| CCATTTAATTCTACCCTAGG+TGG | 0.537784 | 2.4:-20890105 | MS.gene026843:CDS |
| CAAACAGGCATTTATTGGTG+GGG | 0.542191 | 2.4:-20893362 | MS.gene026843:CDS |
| TGCTGCAGCAGTCCCACCTA+GGG | 0.546607 | 2.4:+20890092 | None:intergenic |
| AAGGAGATATCACAATAAGT+AGG | 0.549912 | 2.4:+20892772 | None:intergenic |
| GATGAAGATGATCGCGCCGG+TGG | 0.549997 | 2.4:+20896144 | None:intergenic |
| TGCATTACCATATCTGGATA+GGG | 0.551101 | 2.4:-20888488 | MS.gene026843:CDS |
| GGTAGCCAAATTTCTGAGGC+CGG | 0.554678 | 2.4:-20891321 | MS.gene026843:CDS |
| TTCTTGTTGTTAAAGTATGG+TGG | 0.556667 | 2.4:+20890069 | None:intergenic |
| TCACCAAACACCCACAAAGC+TGG | 0.559084 | 2.4:+20894040 | None:intergenic |
| TAGGGTAGAATTAAATGGGA+AGG | 0.562334 | 2.4:+20890110 | None:intergenic |
| TTATAAAGAAGAAAATGAAG+AGG | 0.563612 | 2.4:+20895970 | None:intergenic |
| GAACTTGTCCCACAAAATCT+GGG | 0.564529 | 2.4:+20890166 | None:intergenic |
| CAAATGAATCATACTTGTCA+CGG | 0.566373 | 2.4:+20891458 | None:intergenic |
| GATCGCGCCGGTGGATCCGA+CGG | 0.567878 | 2.4:+20896153 | None:intergenic |
| AGAAAATGTACGAGCATGAG+AGG | 0.570665 | 2.4:+20891274 | None:intergenic |
| TAAGTGGATATACTGGATAG+AGG | 0.573634 | 2.4:+20891527 | None:intergenic |
| AATATAATGCTAAGAACCAC+CGG | 0.576125 | 2.4:+20891302 | None:intergenic |
| TCGTCGAGCTGCAGCTAAAG+CGG | 0.577826 | 2.4:-20888637 | MS.gene026843:CDS |
| ATATACAACGTAGCTGGAGG+CGG | 0.584749 | 2.4:-20892930 | MS.gene026843:CDS |
| TATTATTCATGATTGTGATG+AGG | 0.592268 | 2.4:-20896010 | MS.gene026843:CDS |
| TGTTGATAAGTCACTTCCAC+GGG | 0.592532 | 2.4:+20888604 | None:intergenic |
| GCGGTGAAAGTCATCTGTAT+GGG | 0.598420 | 2.4:-20892911 | MS.gene026843:CDS |
| AGGGTAGAATTAAATGGGAA+GGG | 0.598968 | 2.4:+20890111 | None:intergenic |
| AATCGGACGGTAAAGATGAA+GGG | 0.601202 | 2.4:-20896095 | MS.gene026843:CDS |
| ACTTGTCACGGAAAAGATCA+GGG | 0.607707 | 2.4:+20891470 | None:intergenic |
| TCTGCTTGATAAACATGCTG+CGG | 0.610372 | 2.4:-20893479 | MS.gene026843:CDS |
| AGTCATCTGTATGGGACCGA+AGG | 0.619316 | 2.4:-20892903 | MS.gene026843:CDS |
| CTAATATACAACGTAGCTGG+AGG | 0.620873 | 2.4:-20892933 | MS.gene026843:CDS |
| ACGTAGACGCTCTCAGCCGT+CGG | 0.622262 | 2.4:-20896169 | MS.gene026843:CDS |
| ATGTTGATAAGTCACTTCCA+CGG | 0.622509 | 2.4:+20888603 | None:intergenic |
| TGGATTGATGATGGTTTCGG+AGG | 0.624749 | 2.4:-20890141 | MS.gene026843:CDS |
| GCTTTAGCTGCAGCTCGACG+AGG | 0.634925 | 2.4:+20888639 | None:intergenic |
| AAGCGGCCTTACCTGACCCG+TGG | 0.635167 | 2.4:-20888620 | MS.gene026843:CDS |
| GACAAAGCGTCGAAATCGGA+CGG | 0.643344 | 2.4:-20896108 | MS.gene026843:CDS |
| AGCCAAATTTCTGAGGCCGG+TGG | 0.644696 | 2.4:-20891318 | MS.gene026843:CDS |
| TGCAGGTAGCCAAATTTCTG+AGG | 0.648461 | 2.4:-20891325 | MS.gene026843:intron |
| CACCATTTGCTACATCGTCG+TGG | 0.651585 | 2.4:+20891201 | None:intergenic |
| GCTAGCAAAGAAACAGCCGC+TGG | 0.655782 | 2.4:+20893780 | None:intergenic |
| AAGAACAGTCTCAGTGACAA+CGG | 0.667152 | 2.4:+20893870 | None:intergenic |
| TGGAAGTGACTTATCAACAT+GGG | 0.672049 | 2.4:-20888600 | MS.gene026843:CDS |
| TAAGATGAAGATGATCGCGC+CGG | 0.674007 | 2.4:+20896141 | None:intergenic |
| GTGGAAGTGACTTATCAACA+TGG | 0.680036 | 2.4:-20888601 | MS.gene026843:CDS |
| GCTATGCTGTGCTTAGCCAG+CGG | 0.680101 | 2.4:-20893796 | MS.gene026843:CDS |
| ATACTTTAACAACAAGAACA+TGG | 0.681934 | 2.4:-20890064 | MS.gene026843:CDS |
| AAGTGACTTATCAACATGGG+AGG | 0.701076 | 2.4:-20888597 | MS.gene026843:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 20888387 | 20896214 | 20888387 | ID=MS.gene026843 |
| chr2.4 | mRNA | 20888387 | 20896214 | 20888387 | ID=MS.gene026843.t1;Parent=MS.gene026843 |
| chr2.4 | exon | 20895943 | 20896214 | 20895943 | ID=MS.gene026843.t1.exon1;Parent=MS.gene026843.t1 |
| chr2.4 | CDS | 20895943 | 20896214 | 20895943 | ID=cds.MS.gene026843.t1;Parent=MS.gene026843.t1 |
| chr2.4 | exon | 20894033 | 20894120 | 20894033 | ID=MS.gene026843.t1.exon2;Parent=MS.gene026843.t1 |
| chr2.4 | CDS | 20894033 | 20894120 | 20894033 | ID=cds.MS.gene026843.t1;Parent=MS.gene026843.t1 |
| chr2.4 | exon | 20893776 | 20893935 | 20893776 | ID=MS.gene026843.t1.exon3;Parent=MS.gene026843.t1 |
| chr2.4 | CDS | 20893776 | 20893935 | 20893776 | ID=cds.MS.gene026843.t1;Parent=MS.gene026843.t1 |
| chr2.4 | exon | 20893339 | 20893556 | 20893339 | ID=MS.gene026843.t1.exon4;Parent=MS.gene026843.t1 |
| chr2.4 | CDS | 20893339 | 20893556 | 20893339 | ID=cds.MS.gene026843.t1;Parent=MS.gene026843.t1 |
| chr2.4 | exon | 20892723 | 20893018 | 20892723 | ID=MS.gene026843.t1.exon5;Parent=MS.gene026843.t1 |
| chr2.4 | CDS | 20892723 | 20893018 | 20892723 | ID=cds.MS.gene026843.t1;Parent=MS.gene026843.t1 |
| chr2.4 | exon | 20891438 | 20891552 | 20891438 | ID=MS.gene026843.t1.exon6;Parent=MS.gene026843.t1 |
| chr2.4 | CDS | 20891438 | 20891552 | 20891438 | ID=cds.MS.gene026843.t1;Parent=MS.gene026843.t1 |
| chr2.4 | exon | 20891204 | 20891342 | 20891204 | ID=MS.gene026843.t1.exon7;Parent=MS.gene026843.t1 |
| chr2.4 | CDS | 20891204 | 20891342 | 20891204 | ID=cds.MS.gene026843.t1;Parent=MS.gene026843.t1 |
| chr2.4 | exon | 20890047 | 20890243 | 20890047 | ID=MS.gene026843.t1.exon8;Parent=MS.gene026843.t1 |
| chr2.4 | CDS | 20890047 | 20890243 | 20890047 | ID=cds.MS.gene026843.t1;Parent=MS.gene026843.t1 |
| chr2.4 | exon | 20888598 | 20888687 | 20888598 | ID=MS.gene026843.t1.exon9;Parent=MS.gene026843.t1 |
| chr2.4 | CDS | 20888598 | 20888687 | 20888598 | ID=cds.MS.gene026843.t1;Parent=MS.gene026843.t1 |
| chr2.4 | exon | 20888387 | 20888518 | 20888387 | ID=MS.gene026843.t1.exon10;Parent=MS.gene026843.t1 |
| chr2.4 | CDS | 20888387 | 20888518 | 20888387 | ID=cds.MS.gene026843.t1;Parent=MS.gene026843.t1 |
| Gene Sequence |
| Protein sequence |