AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026951

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026951.t1 MTR_6g007170 92.938 354 25 0 2 355 33 386 0.0 683
MS.gene026951.t1 MTR_6g007175 92.958 355 6 1 1 355 1 336 0.0 672
MS.gene026951.t1 MTR_4g005880 28.455 246 172 3 91 336 152 393 4.55e-25 106
MS.gene026951.t1 MTR_4g013090 27.799 259 170 5 83 336 60 306 3.84e-24 101
MS.gene026951.t1 MTR_3g005970 30.952 294 164 11 43 314 75 351 2.41e-23 100
MS.gene026951.t1 MTR_1g107480 29.719 249 165 4 91 336 119 360 3.21e-23 101
MS.gene026951.t1 MTR_8g033390 27.413 259 173 5 80 333 65 313 1.33e-21 94.4
MS.gene026951.t1 MTR_4g013100 25.267 281 193 5 60 336 40 307 1.33e-21 94.0
MS.gene026951.t1 MTR_4g012960 26.275 255 176 4 83 336 60 303 3.97e-20 89.7
MS.gene026951.t1 MTR_8g033400 26.804 291 177 10 64 335 48 321 1.85e-17 82.8
MS.gene026951.t1 MTR_8g033410 25.517 290 179 9 64 333 40 312 7.17e-17 80.9
MS.gene026951.t1 MTR_2g101840 26.772 254 176 6 85 336 62 307 1.03e-14 74.3
MS.gene026951.t1 MTR_4g013135 29.528 254 168 6 85 336 62 306 1.75e-13 70.9
MS.gene026951.t1 MTR_1g112510 26.383 235 152 6 98 314 94 325 8.03e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026951.t1 AT5G14780 83.616 354 58 0 2 355 17 370 0.0 596
MS.gene026951.t1 AT5G14780 83.616 354 58 0 2 355 31 384 0.0 595
MS.gene026951.t1 AT5G14780 83.616 354 58 0 2 355 5 358 0.0 595
MS.gene026951.t1 AT1G17745 29.070 258 178 4 80 336 134 387 6.07e-26 109
MS.gene026951.t1 AT4G34200 29.825 228 156 3 91 318 125 348 5.38e-24 103
MS.gene026951.t1 AT1G72190 27.817 284 189 6 37 314 69 342 8.03e-24 101
MS.gene026951.t1 AT1G17745 27.465 284 176 6 80 336 134 414 7.29e-23 100
MS.gene026951.t1 AT3G19480 27.642 246 174 3 91 336 110 351 1.60e-22 99.4
MS.gene026951.t1 AT1G79870 27.843 255 175 5 85 338 62 308 2.63e-21 93.2
MS.gene026951.t1 AT1G12550 25.106 235 170 2 80 314 64 292 2.61e-20 90.5
MS.gene026951.t1 AT2G45630 28.750 240 164 4 78 316 78 311 1.52e-19 88.6
MS.gene026951.t1 AT1G79870 25.490 255 162 5 85 338 62 289 2.04e-15 76.3

Find 96 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGCTTGAGAGGCACTTTA+AGG 0.168046 6.2:-2801581 MS.gene026951:CDS
TTCAACACATCCAACAAAAT+TGG 0.168585 6.2:+2802996 None:intergenic
ATATAAAAGGTTACAGTTAA+AGG 0.184451 6.2:+2802414 None:intergenic
CCAATTTCTTTCTCCAATTC+AGG 0.191495 6.2:+2802370 None:intergenic
CAATGCTCGTGGGGCAATTA+TGG 0.213265 6.2:-2802083 MS.gene026951:CDS
GCCATGACTCCTCATATTTC+TGG 0.221909 6.2:-2801783 MS.gene026951:CDS
TAAATTATACCTTGTCTTAT+CGG 0.247196 6.2:+2802276 None:intergenic
CTCAACGCTGCGGCTGCTGC+TGG 0.289747 6.2:-2802664 MS.gene026951:CDS
TAGCGCCATGGATGATCTTT+TGG 0.296464 6.2:+2801819 None:intergenic
TTCACAATGTAGTGCTGTTC+AGG 0.309434 6.2:+2801547 None:intergenic
CCTGAATTGGAGAAAGAAAT+TGG 0.310313 6.2:-2802370 MS.gene026951:CDS
AGTTAAAGGGTTTCAGCCTT+TGG 0.316924 6.2:+2802428 None:intergenic
TATAAAAGGTTACAGTTAAA+GGG 0.334347 6.2:+2802415 None:intergenic
TCAACACATCCAACAAAATT+GGG 0.339618 6.2:+2802997 None:intergenic
CGCTTTCTTAATTCTTTCCT+CGG 0.344856 6.2:+2802738 None:intergenic
TAAGTCTATCATGATATAAA+AGG 0.348710 6.2:+2802401 None:intergenic
GGTTACAAGCAGGCTGTTGC+CGG 0.355403 6.2:-2802547 MS.gene026951:CDS
GACAAAGAAGGACCTGATTC+TGG 0.363375 6.2:-2802913 MS.gene026951:intron
GATACTACATTCACCGGTAT+TGG 0.372695 6.2:+2801506 None:intergenic
TAGGTTACAGTGGTGATGTT+TGG 0.375068 6.2:-2801857 MS.gene026951:CDS
ACCGGTATTGGCTTGCCAAT+TGG 0.379845 6.2:+2801518 None:intergenic
GGTCAGTTACGTTATGCTGC+TGG 0.379919 6.2:-2801613 MS.gene026951:intron
GTCAGTTACGTTATGCTGCT+GGG 0.386317 6.2:-2801612 MS.gene026951:intron
CTTTCCTCGGTGACATAGGC+AGG 0.386770 6.2:+2802751 None:intergenic
TCAAAATTCTAACCAGAATC+AGG 0.393287 6.2:+2802901 None:intergenic
CGTCTTTCCTTCAAGATCAT+AGG 0.406591 6.2:+2802492 None:intergenic
ACTTAAGATGGAGCCTGAAT+TGG 0.406632 6.2:-2802383 MS.gene026951:CDS
GGTGAAATGGTGTAGATATC+AGG 0.417800 6.2:+2802773 None:intergenic
ATATCATGATAGACTTAAGA+TGG 0.430838 6.2:-2802395 MS.gene026951:CDS
CATTGTGAAGCAAGGCCAAT+TGG 0.431813 6.2:-2801533 MS.gene026951:CDS
ATAAACTACCTGTGCATCAA+TGG 0.432079 6.2:+2801755 None:intergenic
TGAGGAGTCATGGCATGATT+AGG 0.436581 6.2:+2801792 None:intergenic
ATGCTTGAGAGGCACTTTAA+GGG 0.439584 6.2:-2801580 MS.gene026951:CDS
GGAGGAAAGAAGAAAATTGT+AGG 0.439790 6.2:-2803057 MS.gene026951:CDS
AGCAGGCTGTTGCCGGAGAA+TGG 0.441500 6.2:-2802540 MS.gene026951:CDS
CATAGAGCCTATGATCTTGA+AGG 0.442532 6.2:-2802499 MS.gene026951:CDS
GGATGTGTTGAAGGAGCATT+AGG 0.450524 6.2:-2802985 MS.gene026951:CDS
TGTACTAGTGGACACATTGC+AGG 0.452738 6.2:-2802037 MS.gene026951:intron
CGGTTGGTGCTGGACGGATC+GGG 0.468797 6.2:-2802462 MS.gene026951:CDS
GTGACATAGGCAGGGTGAAA+TGG 0.470645 6.2:+2802760 None:intergenic
ACGGTTGGTGCTGGACGGAT+CGG 0.474630 6.2:-2802463 MS.gene026951:CDS
CTCGTGAGGAATTTCTTGCC+TGG 0.476350 6.2:-2802568 MS.gene026951:CDS
GCCGGAGAATGGAATGTTGC+TGG 0.480317 6.2:-2802529 MS.gene026951:CDS
TATTATTGAGAATAGGCCTC+TGG 0.487053 6.2:-2803078 MS.gene026951:intron
GATATCAGGACATGCAGATC+GGG 0.492666 6.2:+2802787 None:intergenic
GCCAATTGGCAAGCCAATAC+CGG 0.498456 6.2:-2801519 MS.gene026951:CDS
ACGGTTGGAACGGTTGGTGC+TGG 0.499961 6.2:-2802472 MS.gene026951:CDS
ACCAGCAACATTCCATTCTC+CGG 0.501972 6.2:+2802528 None:intergenic
ACCTTGTCTTATCGGTGAGA+GGG 0.507302 6.2:+2802284 None:intergenic
AATTCTTTCCTCGGTGACAT+AGG 0.513371 6.2:+2802747 None:intergenic
GCAACAGCCTGCTTGTAACC+AGG 0.517533 6.2:+2802550 None:intergenic
GGAAAGACGGTTGGAACGGT+TGG 0.521323 6.2:-2802478 MS.gene026951:CDS
TTGATTGTTAACAATGCTCG+TGG 0.521418 6.2:-2802094 MS.gene026951:CDS
TTTCTTGCCTGGTTACAAGC+AGG 0.523136 6.2:-2802557 MS.gene026951:CDS
AGAAATTGGAGCTCAGTTTG+AGG 0.526267 6.2:-2802356 MS.gene026951:CDS
TGGAACCACCATTGATGCAC+AGG 0.536965 6.2:-2801763 MS.gene026951:intron
CACAGGAAGCAACGTAGTAT+CGG 0.541220 6.2:-2802623 MS.gene026951:CDS
TGAGAGGCACTTTAAGGGTG+AGG 0.541517 6.2:-2801575 MS.gene026951:CDS
AGAATCGCTAAGTTGAAGAA+AGG 0.545413 6.2:-2802121 MS.gene026951:CDS
ATAACAACTATGTCGCACTT+TGG 0.549637 6.2:+2802313 None:intergenic
GATCTTGAAGGAAAGACGGT+TGG 0.556559 6.2:-2802487 MS.gene026951:CDS
ACTTTGGTAGCATTGTATCA+AGG 0.557573 6.2:+2802329 None:intergenic
TACCTTGTCTTATCGGTGAG+AGG 0.560917 6.2:+2802283 None:intergenic
TCCAGAAATATGAGGAGTCA+TGG 0.561503 6.2:+2801782 None:intergenic
TTAACCGTCGCAGAGGTCAC+AGG 0.565278 6.2:-2802640 MS.gene026951:CDS
ACATCCAACAAAATTGGGGT+TGG 0.565621 6.2:+2803002 None:intergenic
GTTGCTGATGCTTGTACTAG+TGG 0.565800 6.2:-2802049 MS.gene026951:CDS
AATGTGATCAGAACCAATGC+CGG 0.567247 6.2:+2802690 None:intergenic
CAGCTCCAAAAGATCATCCA+TGG 0.568481 6.2:-2801824 MS.gene026951:CDS
TGATTGTTAACAATGCTCGT+GGG 0.577213 6.2:-2802093 MS.gene026951:CDS
AGATATCAGGACATGCAGAT+CGG 0.580334 6.2:+2802786 None:intergenic
TTGGAACGGTTGGTGCTGGA+CGG 0.591545 6.2:-2802468 MS.gene026951:CDS
TGAAGGAAAGACGGTTGGAA+CGG 0.596590 6.2:-2802482 MS.gene026951:CDS
ATTGTAGGTGTGTTCTACAA+AGG 0.596743 6.2:-2803042 MS.gene026951:CDS
TTTCATCTTATAGGTTACAG+TGG 0.598319 6.2:-2801867 MS.gene026951:intron
ATTGTCACAGATGACAAAGA+AGG 0.604616 6.2:-2802925 MS.gene026951:CDS
CAACGTAGTATCGGTTGCTG+AGG 0.609487 6.2:-2802614 MS.gene026951:CDS
GCTTCCTGTGACCTCTGCGA+CGG 0.611055 6.2:+2802636 None:intergenic
TGATTAGGCATGTAGCGCCA+TGG 0.614868 6.2:+2801807 None:intergenic
TGAGAATTCTCATTCTCGTG+AGG 0.615649 6.2:-2802582 MS.gene026951:CDS
CTATGATCTTGAAGGAAAGA+CGG 0.616356 6.2:-2802491 MS.gene026951:CDS
CAACACATCCAACAAAATTG+GGG 0.620958 6.2:+2802998 None:intergenic
CCTTGTCTTATCGGTGAGAG+GGG 0.620981 6.2:+2802285 None:intergenic
TATTGAGAATAGGCCTCTGG+AGG 0.626934 6.2:-2803075 MS.gene026951:intron
CCCCTCTCACCGATAAGACA+AGG 0.628167 6.2:-2802285 MS.gene026951:intron
AACTACCTGTGCATCAATGG+TGG 0.632641 6.2:+2801758 None:intergenic
CGCGAGTGGCTTGAATCACA+AGG 0.636363 6.2:-2802958 MS.gene026951:CDS
TTTCCTCGGTGACATAGGCA+GGG 0.636732 6.2:+2802752 None:intergenic
GATTGTTAACAATGCTCGTG+GGG 0.637460 6.2:-2802092 MS.gene026951:CDS
CAGCACTACATTGTGAAGCA+AGG 0.639193 6.2:-2801541 MS.gene026951:CDS
GAGCATTAGGTATACGCGAG+TGG 0.657382 6.2:-2802972 MS.gene026951:CDS
TGCTGGTTTAACCGTCGCAG+AGG 0.660243 6.2:-2802647 MS.gene026951:CDS
TCAGTTACGTTATGCTGCTG+GGG 0.676617 6.2:-2801611 MS.gene026951:intron
ATGGTGGTTCCAGAAATATG+AGG 0.685776 6.2:+2801774 None:intergenic
TCACATTGATCTCAACGCTG+CGG 0.717985 6.2:-2802674 MS.gene026951:CDS
TCACCCTGCCTATGTCACCG+AGG 0.774835 6.2:-2802755 MS.gene026951:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTTAATCTTTAAAAT+TGG - chr6.2:2801822-2801841 MS.gene026951:CDS 10.0%
!! TTCTCAATAATAACAAAAAA+TGG + chr6.2:2802318-2802337 None:intergenic 15.0%
!!! AACTTTATCTTAAAAGTTTT+TGG - chr6.2:2802547-2802566 MS.gene026951:CDS 15.0%
!!! TTTAAGATAAAGTTTAAAGA+GGG + chr6.2:2802541-2802560 None:intergenic 15.0%
!!! TTTTAAGATAAAGTTTAAAG+AGG + chr6.2:2802542-2802561 None:intergenic 15.0%
!!! TTTTTGTTATTATTGAGAAT+AGG - chr6.2:2802319-2802338 MS.gene026951:CDS 15.0%
!! AATCCTAAAACAAAGATAAA+AGG + chr6.2:2801535-2801554 None:intergenic 20.0%
!! ACTCATAGTTTACATAATAA+TGG + chr6.2:2803202-2803221 None:intergenic 20.0%
!! ATATAAAAGGTTACAGTTAA+AGG + chr6.2:2802993-2803012 None:intergenic 20.0%
!! TAAATTATACCTTGTCTTAT+CGG + chr6.2:2803131-2803150 None:intergenic 20.0%
!! TAAGTCTATCATGATATAAA+AGG + chr6.2:2803006-2803025 None:intergenic 20.0%
!! TACTATTATCGATCTATTAA+CGG - chr6.2:2803152-2803171 MS.gene026951:intron 20.0%
!! TATAAAAGGTTACAGTTAAA+GGG + chr6.2:2802992-2803011 None:intergenic 20.0%
!! TATACATTCAGATATCAAAA+TGG - chr6.2:2802234-2802253 MS.gene026951:intron 20.0%
!!! AGCTTTAATGTTATCATTTA+CGG - chr6.2:2802019-2802038 MS.gene026951:intron 20.0%
!!! TGATATTGATAATTGAAACT+TGG - chr6.2:2803770-2803789 MS.gene026951:intron 20.0%
!!! TGTAATTTTGATACATTCAA+TGG - chr6.2:2802206-2802225 MS.gene026951:intron 20.0%
!!! TTACCTTTTATCTTTGTTTT+AGG - chr6.2:2801529-2801548 MS.gene026951:CDS 20.0%
! AAAAATGGAGAAAATGTAGT+CGG + chr6.2:2803736-2803755 None:intergenic 25.0%
! AAAATCGCCTAAAAAAATCA+AGG - chr6.2:2801948-2801967 MS.gene026951:intron 25.0%
! AAATCGCCTAAAAAAATCAA+GGG - chr6.2:2801949-2801968 MS.gene026951:intron 25.0%
! ACAAAACATACAGAAAATAC+CGG + chr6.2:2802268-2802287 None:intergenic 25.0%
! ATATCATGATAGACTTAAGA+TGG - chr6.2:2803009-2803028 MS.gene026951:CDS 25.0%
! ATGATTTGACTATCAAAACA+CGG - chr6.2:2801582-2801601 MS.gene026951:CDS 25.0%
! GCTTTAATGTTATCATTTAC+GGG - chr6.2:2802020-2802039 MS.gene026951:intron 25.0%
! GTCACATCATTATAAATTGA+GGG - chr6.2:2801875-2801894 MS.gene026951:intron 25.0%
! TCATATATTTATCGACAGTT+AGG + chr6.2:2801711-2801730 None:intergenic 25.0%
! TGAACTTAGCTAAAGAAAAA+AGG + chr6.2:2803702-2803721 None:intergenic 25.0%
! TGTCACATCATTATAAATTG+AGG - chr6.2:2801874-2801893 MS.gene026951:intron 25.0%
!! AAAAAAGTTTTCTCATTGCT+AGG + chr6.2:2803229-2803248 None:intergenic 25.0%
!! AGTAATTTGCGCAAAAAAAA+TGG + chr6.2:2803751-2803770 None:intergenic 25.0%
!! TTTTTCTTTTTGTGATTCAG+AGG - chr6.2:2803244-2803263 MS.gene026951:intron 25.0%
!!! AGTTTACATAATAATGGACA+TGG + chr6.2:2803196-2803215 None:intergenic 25.0%
!!! TATCAAAATGGTTGTTTTAC+CGG - chr6.2:2802246-2802265 MS.gene026951:intron 25.0%
AAAAATCAAGGGGTCAAAAT+CGG - chr6.2:2801960-2801979 MS.gene026951:intron 30.0%
AATCGCCTAAAAAAATCAAG+GGG - chr6.2:2801950-2801969 MS.gene026951:intron 30.0%
ACAGCTAAGTTTCATCTTAT+AGG - chr6.2:2803528-2803547 MS.gene026951:intron 30.0%
ATAGTCAAATCATTGATCGT+AGG + chr6.2:2801575-2801594 None:intergenic 30.0%
ATCGGACAATTAGAAAACTT+AGG - chr6.2:2801978-2801997 MS.gene026951:intron 30.0%
CAGAAACATAAATGAAATCG+AGG + chr6.2:2803468-2803487 None:intergenic 30.0%
CAGTTAGGAAACAAATGTTA+TGG + chr6.2:2801696-2801715 None:intergenic 30.0%
TATAAATTGAGGGAAGATGT+GGG - chr6.2:2801885-2801904 MS.gene026951:intron 30.0%
TCAAAATTCTAACCAGAATC+AGG + chr6.2:2802506-2802525 None:intergenic 30.0%
TCAACACATCCAACAAAATT+GGG + chr6.2:2802410-2802429 None:intergenic 30.0%
TCGGACAATTAGAAAACTTA+GGG - chr6.2:2801979-2801998 MS.gene026951:intron 30.0%
TTATAAATTGAGGGAAGATG+TGG - chr6.2:2801884-2801903 MS.gene026951:intron 30.0%
TTCAACACATCCAACAAAAT+TGG + chr6.2:2802411-2802430 None:intergenic 30.0%
TTTCATCTTATAGGTTACAG+TGG - chr6.2:2803537-2803556 MS.gene026951:intron 30.0%
! AATTTTGTTGGATGTGTTGA+AGG - chr6.2:2802410-2802429 MS.gene026951:CDS 30.0%
! TATTAACGGTCTAGTTTACA+AGG - chr6.2:2803166-2803185 MS.gene026951:intron 30.0%
!!! TTTGACCCCTTGATTTTTTT+AGG + chr6.2:2801958-2801977 None:intergenic 30.0%
AAAATGACGTACAAGTGGAA+GGG - chr6.2:2801748-2801767 MS.gene026951:intron 35.0%
ATAAACTACCTGTGCATCAA+TGG + chr6.2:2803652-2803671 None:intergenic 35.0%
ATAACAACTATGTCGCACTT+TGG + chr6.2:2803094-2803113 None:intergenic 35.0%
ATAGTACGGAATCATGTACA+TGG + chr6.2:2801662-2801681 None:intergenic 35.0%
ATTGTAGGTGTGTTCTACAA+AGG - chr6.2:2802362-2802381 MS.gene026951:CDS 35.0%
ATTGTCACAGATGACAAAGA+AGG - chr6.2:2802479-2802498 MS.gene026951:CDS 35.0%
CAACACATCCAACAAAATTG+GGG + chr6.2:2802409-2802428 None:intergenic 35.0%
CCAATTTCTTTCTCCAATTC+AGG + chr6.2:2803037-2803056 None:intergenic 35.0%
CCTGAATTGGAGAAAGAAAT+TGG - chr6.2:2803034-2803053 MS.gene026951:CDS 35.0%
CGCTTTCTTAATTCTTTCCT+CGG + chr6.2:2802669-2802688 None:intergenic 35.0%
CTATGATCTTGAAGGAAAGA+CGG - chr6.2:2802913-2802932 MS.gene026951:intron 35.0%
GCACAATTGAGAAACTTGAA+GGG - chr6.2:2801923-2801942 MS.gene026951:intron 35.0%
GGAGGAAAGAAGAAAATTGT+AGG - chr6.2:2802347-2802366 MS.gene026951:CDS 35.0%
TATTATTGAGAATAGGCCTC+TGG - chr6.2:2802326-2802345 MS.gene026951:CDS 35.0%
TCTAGAAAATGACGTACAAG+TGG - chr6.2:2801743-2801762 MS.gene026951:intron 35.0%
TGATTGTTAACAATGCTCGT+GGG - chr6.2:2803311-2803330 MS.gene026951:intron 35.0%
TGCACAATTGAGAAACTTGA+AGG - chr6.2:2801922-2801941 MS.gene026951:intron 35.0%
TGGTGTGCATATAGATAGTA+CGG + chr6.2:2801676-2801695 None:intergenic 35.0%
TTGATTGTTAACAATGCTCG+TGG - chr6.2:2803310-2803329 MS.gene026951:intron 35.0%
! AATTTTCTTCTTTCCTCCAG+AGG + chr6.2:2802345-2802364 None:intergenic 35.0%
! ACTTTGGTAGCATTGTATCA+AGG + chr6.2:2803078-2803097 None:intergenic 35.0%
! AGAATCGCTAAGTTGAAGAA+AGG - chr6.2:2803283-2803302 MS.gene026951:intron 35.0%
!!! TTACAGTTGCTTTTAACTGC+CGG - chr6.2:2802695-2802714 MS.gene026951:CDS 35.0%
AATGTGATCAGAACCAATGC+CGG + chr6.2:2802717-2802736 None:intergenic 40.0%
AATTCTTTCCTCGGTGACAT+AGG + chr6.2:2802660-2802679 None:intergenic 40.0%
ACATCCAACAAAATTGGGGT+TGG + chr6.2:2802405-2802424 None:intergenic 40.0%
ACTTAAGATGGAGCCTGAAT+TGG - chr6.2:2803021-2803040 MS.gene026951:CDS 40.0%
AGAAATTGGAGCTCAGTTTG+AGG - chr6.2:2803048-2803067 MS.gene026951:CDS 40.0%
AGATATCAGGACATGCAGAT+CGG + chr6.2:2802621-2802640 None:intergenic 40.0%
AGTTAAAGGGTTTCAGCCTT+TGG + chr6.2:2802979-2802998 None:intergenic 40.0%
ATGGTGGTTCCAGAAATATG+AGG + chr6.2:2803633-2803652 None:intergenic 40.0%
CATAGAGCCTATGATCTTGA+AGG - chr6.2:2802905-2802924 MS.gene026951:intron 40.0%
CGTCTTTCCTTCAAGATCAT+AGG + chr6.2:2802915-2802934 None:intergenic 40.0%
GAAAATGACGTACAAGTGGA+AGG - chr6.2:2801747-2801766 MS.gene026951:intron 40.0%
GAGAAAATGTAGTCGGTAGT+CGG + chr6.2:2803729-2803748 None:intergenic 40.0%
GATTGTTAACAATGCTCGTG+GGG - chr6.2:2803312-2803331 MS.gene026951:intron 40.0%
GGGTGAAAAATATGCTTGAG+AGG - chr6.2:2803813-2803832 MS.gene026951:intron 40.0%
GGTGAAATGGTGTAGATATC+AGG + chr6.2:2802634-2802653 None:intergenic 40.0%
TCCAGAAATATGAGGAGTCA+TGG + chr6.2:2803625-2803644 None:intergenic 40.0%
TGAGAATTCTCATTCTCGTG+AGG - chr6.2:2802822-2802841 MS.gene026951:intron 40.0%
! ATTGGTAATATCCATGCACG+AGG - chr6.2:2801840-2801859 MS.gene026951:CDS 40.0%
! TAGGTTACAGTGGTGATGTT+TGG - chr6.2:2803547-2803566 MS.gene026951:intron 40.0%
! TCGGGAAACTTTTACTCCAA+AGG - chr6.2:2802960-2802979 MS.gene026951:CDS 40.0%
! TTCACAATGTAGTGCTGTTC+AGG + chr6.2:2803860-2803879 None:intergenic 40.0%
!! ATGCTTGAGAGGCACTTTAA+GGG - chr6.2:2803824-2803843 MS.gene026951:intron 40.0%
!! TATGCTTGAGAGGCACTTTA+AGG - chr6.2:2803823-2803842 MS.gene026951:intron 40.0%
AAATTGAGGGAAGATGTGGG+AGG - chr6.2:2801888-2801907 MS.gene026951:intron 45.0%
AACTACCTGTGCATCAATGG+TGG + chr6.2:2803649-2803668 None:intergenic 45.0%
ACCAGCAACATTCCATTCTC+CGG + chr6.2:2802879-2802898 None:intergenic 45.0%
ACCTTGTCTTATCGGTGAGA+GGG + chr6.2:2803123-2803142 None:intergenic 45.0%
CACAGGAAGCAACGTAGTAT+CGG - chr6.2:2802781-2802800 MS.gene026951:CDS 45.0%
CAGCACTACATTGTGAAGCA+AGG - chr6.2:2803863-2803882 MS.gene026951:intron 45.0%
CAGCTCCAAAAGATCATCCA+TGG - chr6.2:2803580-2803599 MS.gene026951:intron 45.0%
CATGTACATGGACTTGGATG+TGG + chr6.2:2801650-2801669 None:intergenic 45.0%
CATTGTGAAGCAAGGCCAAT+TGG - chr6.2:2803871-2803890 MS.gene026951:intron 45.0%
CGGAATCATGTACATGGACT+TGG + chr6.2:2801656-2801675 None:intergenic 45.0%
GACAAAGAAGGACCTGATTC+TGG - chr6.2:2802491-2802510 MS.gene026951:CDS 45.0%
GATATCAGGACATGCAGATC+GGG + chr6.2:2802620-2802639 None:intergenic 45.0%
GATCTTGAAGGAAAGACGGT+TGG - chr6.2:2802917-2802936 MS.gene026951:CDS 45.0%
GCCATGACTCCTCATATTTC+TGG - chr6.2:2803621-2803640 MS.gene026951:intron 45.0%
GTCAGTTACGTTATGCTGCT+GGG - chr6.2:2803792-2803811 MS.gene026951:intron 45.0%
GTTGCTGATGCTTGTACTAG+TGG - chr6.2:2803355-2803374 MS.gene026951:intron 45.0%
TACCTTGTCTTATCGGTGAG+AGG + chr6.2:2803124-2803143 None:intergenic 45.0%
TATTGAGAATAGGCCTCTGG+AGG - chr6.2:2802329-2802348 MS.gene026951:CDS 45.0%
TCACATTGATCTCAACGCTG+CGG - chr6.2:2802730-2802749 MS.gene026951:CDS 45.0%
TCAGTTACGTTATGCTGCTG+GGG - chr6.2:2803793-2803812 MS.gene026951:intron 45.0%
TGAAGGAAAGACGGTTGGAA+CGG - chr6.2:2802922-2802941 MS.gene026951:CDS 45.0%
TGAGGAGTCATGGCATGATT+AGG + chr6.2:2803615-2803634 None:intergenic 45.0%
TTTCTTGCCTGGTTACAAGC+AGG - chr6.2:2802847-2802866 MS.gene026951:intron 45.0%
! GCATCCAACCCCAATTTTGT+TGG - chr6.2:2802398-2802417 MS.gene026951:CDS 45.0%
! TAGCGCCATGGATGATCTTT+TGG + chr6.2:2803588-2803607 None:intergenic 45.0%
! TGTACTAGTGGACACATTGC+AGG - chr6.2:2803367-2803386 MS.gene026951:intron 45.0%
!! GGATGTGTTGAAGGAGCATT+AGG - chr6.2:2802419-2802438 MS.gene026951:CDS 45.0%
!! TTGCTTTTAACTGCCGGCAT+TGG - chr6.2:2802701-2802720 MS.gene026951:CDS 45.0%
!!! CATGGATGATCTTTTGGAGC+TGG + chr6.2:2803582-2803601 None:intergenic 45.0%
!!! GATCTTTTGGAGCTGGTTGT+GGG + chr6.2:2803575-2803594 None:intergenic 45.0%
!!! TGATCTTTTGGAGCTGGTTG+TGG + chr6.2:2803576-2803595 None:intergenic 45.0%
CAATGCTCGTGGGGCAATTA+TGG - chr6.2:2803321-2803340 MS.gene026951:intron 50.0%
CCTTGTCTTATCGGTGAGAG+GGG + chr6.2:2803122-2803141 None:intergenic 50.0%
CTCGTGAGGAATTTCTTGCC+TGG - chr6.2:2802836-2802855 MS.gene026951:intron 50.0%
GAGCATTAGGTATACGCGAG+TGG - chr6.2:2802432-2802451 MS.gene026951:CDS 50.0%
GCCAATTGGCAAGCCAATAC+CGG - chr6.2:2803885-2803904 MS.gene026951:intron 50.0%
GGAATGTGCTTCTCGAGTTC+TGG + chr6.2:2802599-2802618 None:intergenic 50.0%
GGTCAGTTACGTTATGCTGC+TGG - chr6.2:2803791-2803810 MS.gene026951:intron 50.0%
GTGACATAGGCAGGGTGAAA+TGG + chr6.2:2802647-2802666 None:intergenic 50.0%
TCTCTAAGTGTCCTCGTGCA+TGG + chr6.2:2801854-2801873 None:intergenic 50.0%
TGATTAGGCATGTAGCGCCA+TGG + chr6.2:2803600-2803619 None:intergenic 50.0%
TGGAACCACCATTGATGCAC+AGG - chr6.2:2803641-2803660 MS.gene026951:intron 50.0%
TTTCCTCGGTGACATAGGCA+GGG + chr6.2:2802655-2802674 None:intergenic 50.0%
!! ACCGGTATTGGCTTGCCAAT+TGG + chr6.2:2803889-2803908 None:intergenic 50.0%
!! CAACGTAGTATCGGTTGCTG+AGG - chr6.2:2802790-2802809 MS.gene026951:CDS 50.0%
!! TGAGAGGCACTTTAAGGGTG+AGG - chr6.2:2803829-2803848 MS.gene026951:intron 50.0%
CCCCTCTCACCGATAAGACA+AGG - chr6.2:2803119-2803138 MS.gene026951:intron 55.0%
CGCGAGTGGCTTGAATCACA+AGG - chr6.2:2802446-2802465 MS.gene026951:CDS 55.0%
CTTTCCTCGGTGACATAGGC+AGG + chr6.2:2802656-2802675 None:intergenic 55.0%
GCAACAGCCTGCTTGTAACC+AGG + chr6.2:2802857-2802876 None:intergenic 55.0%
GCCGGAGAATGGAATGTTGC+TGG - chr6.2:2802875-2802894 MS.gene026951:intron 55.0%
GGAAAGACGGTTGGAACGGT+TGG - chr6.2:2802926-2802945 MS.gene026951:CDS 55.0%
GGTTACAAGCAGGCTGTTGC+CGG - chr6.2:2802857-2802876 MS.gene026951:intron 55.0%
TTAACCGTCGCAGAGGTCAC+AGG - chr6.2:2802764-2802783 MS.gene026951:CDS 55.0%
!! TGCTGGTTTAACCGTCGCAG+AGG - chr6.2:2802757-2802776 MS.gene026951:CDS 55.0%
!! TTGGAACGGTTGGTGCTGGA+CGG - chr6.2:2802936-2802955 MS.gene026951:CDS 55.0%
AGCAGGCTGTTGCCGGAGAA+TGG - chr6.2:2802864-2802883 MS.gene026951:intron 60.0%
GCTTCCTGTGACCTCTGCGA+CGG + chr6.2:2802771-2802790 None:intergenic 60.0%
TCACCCTGCCTATGTCACCG+AGG - chr6.2:2802649-2802668 MS.gene026951:CDS 60.0%
! ACGGTTGGAACGGTTGGTGC+TGG - chr6.2:2802932-2802951 MS.gene026951:CDS 60.0%
!! ACGGTTGGTGCTGGACGGAT+CGG - chr6.2:2802941-2802960 MS.gene026951:CDS 60.0%
!! CGGTTGGTGCTGGACGGATC+GGG - chr6.2:2802942-2802961 MS.gene026951:CDS 65.0%
CTCAACGCTGCGGCTGCTGC+TGG - chr6.2:2802740-2802759 MS.gene026951:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 2801516 2803910 2801516 ID=MS.gene026951
chr6.2 mRNA 2801516 2803910 2801516 ID=MS.gene026951.t1;Parent=MS.gene026951
chr6.2 exon 2803908 2803910 2803908 ID=MS.gene026951.t1.exon1;Parent=MS.gene026951.t1
chr6.2 CDS 2803908 2803910 2803908 ID=cds.MS.gene026951.t1;Parent=MS.gene026951.t1
chr6.2 exon 2802914 2803085 2802914 ID=MS.gene026951.t1.exon2;Parent=MS.gene026951.t1
chr6.2 CDS 2802914 2803085 2802914 ID=cds.MS.gene026951.t1;Parent=MS.gene026951.t1
chr6.2 exon 2802286 2802826 2802286 ID=MS.gene026951.t1.exon3;Parent=MS.gene026951.t1
chr6.2 CDS 2802286 2802826 2802286 ID=cds.MS.gene026951.t1;Parent=MS.gene026951.t1
chr6.2 exon 2802038 2802162 2802038 ID=MS.gene026951.t1.exon4;Parent=MS.gene026951.t1
chr6.2 CDS 2802038 2802162 2802038 ID=cds.MS.gene026951.t1;Parent=MS.gene026951.t1
chr6.2 exon 2801764 2801876 2801764 ID=MS.gene026951.t1.exon5;Parent=MS.gene026951.t1
chr6.2 CDS 2801764 2801876 2801764 ID=cds.MS.gene026951.t1;Parent=MS.gene026951.t1
chr6.2 exon 2801516 2801629 2801516 ID=MS.gene026951.t1.exon6;Parent=MS.gene026951.t1
chr6.2 CDS 2801516 2801629 2801516 ID=cds.MS.gene026951.t1;Parent=MS.gene026951.t1
Gene Sequence

>MS.gene026951

ATGGTTTGTTTTCTTACCTTTTATCTTTGTTTTAGGATTAAGTTTGATTATATTATCCTACGATCAATGATTTGACTATCAAAACACGGTTTCTCATGTTTGATCACATGATAGTTATGTTTTCTCATGTTCCACATCCAAGTCCATGTACATGATTCCGTACTATCTATATGCACACCATAACATTTGTTTCCTAACTGTCGATAAATATATGAACAATAAAGATTTCTAGAAAATGACGTACAAGTGGAAGGGCACATTTAGAAATCATGTGCTCTTCTTTCTTTGTTTTTCTCTTTCTTTTTGTGTTTTTTAATCTTTAAAATTGGTAATATCCATGCACGAGGACACTTAGAGATGTCACATCATTATAAATTGAGGGAAGATGTGGGAGGCATCATGAAATTGCACAATTGAGAAACTTGAAGGGTTAAAATCGCCTAAAAAAATCAAGGGGTCAAAATCGGACAATTAGAAAACTTAGGGAGTCAAGAGTGCAATTAAGCTTTAATGTTATCATTTACGGGTAGAAAATTATTTTAGTCTTTTAATGTGTGACGCATTATCAATGTAGTTTACAAGTTACTCTTTTGTGTTCGTAATTTTATTGATTAAATTGATCAACGAAAAACATTTTCAAAGATTAAAGTAATTAAAATGACTAACAAAACTTATATTTAGATATAATTTTGTAATTTTGATACATTCAATGGCAGCTTATACATTCAGATATCAAAATGGTTGTTTTACCGGTATTTTCTGTATGTTTTGTTTTGTTCATTGATTTTCTTATACATTGCCATTTTTTGTTATTATTGAGAATAGGCCTCTGGAGGAAAGAAGAAAATTGTAGGTGTGTTCTACAAAGGCAATGAGAATGCTGCATCCAACCCCAATTTTGTTGGATGTGTTGAAGGAGCATTAGGTATACGCGAGTGGCTTGAATCACAAGGACATGAATACATTGTCACAGATGACAAAGAAGGACCTGATTCTGGTTAGAATTTTGACGAATTAATCGACCCTCTTTAAACTTTATCTTAAAAGTTTTTGGTTGCATTAACTTATGACTATCTGTTACCAGAACTCGAGAAGCACATTCCCGATCTGCATGTCCTGATATCTACACCATTTCACCCTGCCTATGTCACCGAGGAAAGAATTAAGAAAGCGAAGAATTTACAGTTGCTTTTAACTGCCGGCATTGGTTCTGATCACATTGATCTCAACGCTGCGGCTGCTGCTGGTTTAACCGTCGCAGAGGTCACAGGAAGCAACGTAGTATCGGTTGCTGAGGATGAGCTTATGAGAATTCTCATTCTCGTGAGGAATTTCTTGCCTGGTTACAAGCAGGCTGTTGCCGGAGAATGGAATGTTGCTGGTATTGCACATAGAGCCTATGATCTTGAAGGAAAGACGGTTGGAACGGTTGGTGCTGGACGGATCGGGAAACTTTTACTCCAAAGGCTGAAACCCTTTAACTGTAACCTTTTATATCATGATAGACTTAAGATGGAGCCTGAATTGGAGAAAGAAATTGGAGCTCAGTTTGAGGATGACCTTGATACAATGCTACCAAAGTGCGACATAGTTGTTATTAACACCCCTCTCACCGATAAGACAAGGTATAATTTAATACTATTATCGATCTATTAACGGTCTAGTTTACAAGGTTATCCATGTCCATTATTATGTAAACTATGAGTCATACCTAGCAATGAGAAAACTTTTTTCTTTTTGTGATTCAGAGGATTGTTTGACAAAAATAGAATCGCTAAGTTGAAGAAAGGCGTCTTGATTGTTAACAATGCTCGTGGGGCAATTATGGACACACAAGCAGTTGCTGATGCTTGTACTAGTGGACACATTGCAGGTAATTCTGAAATCAGCTGACAAAAAAAAAATTGTTTACGAACAGAACATAAAACGATGTTTCAAGTAATGTAAAACCTCGATTTCATTTATGTTTCTGAAAAAAATATGAAACTATGTTTGAACTTTGAAGTAATGTAACAGCTAAGTTTCATCTTATAGGTTACAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAAGATCATCCATGGCGCTACATGCCTAATCATGCCATGACTCCTCATATTTCTGGAACCACCATTGATGCACAGGTAGTTTATTTTACTTTTTTTCTTGACATTAGCATACCTTTTTTCTTTAGCTAAGTTCATTGACCGACTACCGACTACATTTTCTCCATTTTTTTTGCGCAAATTACTGATATTGATAATTGAAACTTGGTCAGTTACGTTATGCTGCTGGGGTGAAAAATATGCTTGAGAGGCACTTTAAGGGTGAGGACTTTCCTGAACAGCACTACATTGTGAAGCAAGGCCAATTGGCAAGCCAATACCGGTGA
Protein sequence

>MS.gene026951.t1

MASGGKKKIVGVFYKGNENAASNPNFVGCVEGALGIREWLESQGHEYIVTDDKEGPDSELEKHIPDLHVLISTPFHPAYVTEERIKKAKNLQLLLTAGIGSDHIDLNAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGYKQAVAGEWNVAGIAHRAYDLEGKTVGTVGAGRIGKLLLQRLKPFNCNLLYHDRLKMEPELEKEIGAQFEDDLDTMLPKCDIVVINTPLTDKTRGLFDKNRIAKLKKGVLIVNNARGAIMDTQAVADACTSGHIAGYSGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKNMLERHFKGEDFPEQHYIVKQGQLASQYR