AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene027049

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027049.t1 MTR_3g052490 92.077 366 14 1 1 351 1 366 0.0 691
MS.gene027049.t1 MTR_3g052480 81.793 368 50 3 1 351 1 368 0.0 611
MS.gene027049.t1 MTR_3g052580 70.950 358 87 3 7 349 3 358 0.0 518
MS.gene027049.t1 MTR_3g052580 70.360 361 90 3 4 349 1 359 0.0 517
MS.gene027049.t1 MTR_5g093090 65.449 356 106 2 12 350 6 361 8.81e-173 484
MS.gene027049.t1 MTR_5g093090 64.211 285 85 2 12 279 6 290 4.30e-128 369
MS.gene027049.t1 MTR_5g093090 69.307 202 60 1 12 211 6 207 5.65e-98 289
MS.gene027049.t1 MTR_1g079540 39.037 374 194 8 1 351 1 363 2.30e-77 242
MS.gene027049.t1 MTR_7g116570 37.602 367 192 10 12 351 10 366 1.82e-73 232
MS.gene027049.t1 MTR_1g024890 36.898 374 203 8 1 351 1 364 4.80e-71 226
MS.gene027049.t1 MTR_3g005650 38.040 347 187 5 23 351 21 357 6.21e-71 225
MS.gene027049.t1 MTR_4g122200 36.088 363 192 9 12 348 17 365 1.13e-70 225
MS.gene027049.t1 MTR_2g033930 35.180 361 202 7 12 349 10 361 2.46e-70 224
MS.gene027049.t1 MTR_8g074560 36.782 348 190 7 26 349 25 366 3.84e-69 221
MS.gene027049.t1 MTR_8g074570 36.257 342 195 7 26 348 32 369 6.04e-69 220
MS.gene027049.t1 MTR_4g035353 34.483 348 199 5 25 351 24 363 1.72e-68 219
MS.gene027049.t1 MTR_2g033920 36.901 355 192 6 18 349 21 366 1.95e-66 214
MS.gene027049.t1 MTR_8g079050 36.290 372 199 10 12 351 11 376 3.39e-66 213
MS.gene027049.t1 MTR_1g069175 36.950 341 188 7 32 351 33 367 7.19e-66 213
MS.gene027049.t1 MTR_0565s0010 37.110 353 188 8 23 351 23 365 6.60e-65 210
MS.gene027049.t1 MTR_8g087890 37.265 373 187 13 9 351 8 363 2.05e-64 208
MS.gene027049.t1 MTR_7g116510 34.501 371 204 9 7 351 1 358 2.97e-64 208
MS.gene027049.t1 MTR_7g116520 36.070 341 189 9 32 351 34 366 5.52e-64 207
MS.gene027049.t1 MTR_7g116500 34.890 364 206 8 12 351 9 365 6.76e-64 207
MS.gene027049.t1 MTR_3g024510 36.842 342 185 8 29 348 35 367 7.65e-64 207
MS.gene027049.t1 MTR_1g079530 36.119 371 195 12 7 351 1 355 4.59e-63 205
MS.gene027049.t1 MTR_5g078210 32.749 342 203 5 11 334 6 338 7.82e-62 201
MS.gene027049.t1 MTR_7g008060 35.244 349 179 10 26 351 28 352 8.30e-62 201
MS.gene027049.t1 MTR_4g019880 34.521 365 203 7 12 351 13 366 1.14e-61 202
MS.gene027049.t1 MTR_3g098270 32.884 371 206 8 14 348 3 366 2.50e-61 201
MS.gene027049.t1 MTR_6g021530 34.521 365 208 10 10 351 6 362 2.95e-60 198
MS.gene027049.t1 MTR_2g044100 33.721 344 191 6 32 349 43 375 5.90e-60 198
MS.gene027049.t1 MTR_4g108690 32.177 317 192 4 34 332 29 340 9.46e-60 196
MS.gene027049.t1 MTR_3g435540 33.227 313 182 4 34 326 25 330 1.00e-59 196
MS.gene027049.t1 MTR_8g074580 30.361 415 217 9 3 350 9 418 5.79e-59 196
MS.gene027049.t1 MTR_8g075230 37.195 328 171 9 21 324 25 341 9.78e-58 191
MS.gene027049.t1 MTR_2g084585 34.682 346 194 9 9 332 8 343 1.30e-56 188
MS.gene027049.t1 MTR_4g087985 33.918 342 183 9 29 335 33 366 2.62e-56 187
MS.gene027049.t1 MTR_3g005660 34.659 352 193 9 26 351 30 370 1.29e-55 186
MS.gene027049.t1 MTR_8g014910 34.302 344 195 9 11 332 12 346 2.60e-55 185
MS.gene027049.t1 MTR_5g009100 31.157 337 204 5 34 349 48 377 6.14e-55 184
MS.gene027049.t1 MTR_2g015080 34.195 348 191 9 12 328 16 356 6.83e-55 184
MS.gene027049.t1 MTR_1g025780 34.091 352 204 6 1 332 9 352 1.28e-54 183
MS.gene027049.t1 MTR_4g056280 34.582 347 195 9 10 332 5 343 2.34e-54 182
MS.gene027049.t1 MTR_1g025760 33.746 323 179 9 31 329 79 390 3.32e-51 175
MS.gene027049.t1 MTR_5g022630 34.169 319 181 7 28 324 39 350 5.48e-51 174
MS.gene027049.t1 MTR_5g022640 32.840 338 191 9 12 324 23 349 2.82e-50 172
MS.gene027049.t1 MTR_2g100620 34.226 336 188 9 22 332 18 345 2.99e-50 171
MS.gene027049.t1 MTR_5g084790 33.626 342 194 11 12 331 13 343 5.67e-50 171
MS.gene027049.t1 MTR_5g084770 32.288 319 186 7 30 326 26 336 6.35e-50 171
MS.gene027049.t1 MTR_5g074270 33.022 321 184 7 29 326 30 342 1.19e-49 170
MS.gene027049.t1 MTR_5g084750 32.484 314 183 7 30 322 28 333 2.55e-49 169
MS.gene027049.t1 MTR_0009s0250 33.724 341 179 11 26 339 27 347 4.69e-49 168
MS.gene027049.t1 MTR_1g025720 34.169 319 182 7 31 329 36 346 8.41e-49 168
MS.gene027049.t1 MTR_3g464730 33.437 323 179 11 29 326 25 336 2.81e-48 166
MS.gene027049.t1 MTR_3g082830 31.447 318 191 7 25 322 31 341 6.05e-48 166
MS.gene027049.t1 MTR_2g461580 34.311 341 182 15 30 349 29 348 9.19e-48 165
MS.gene027049.t1 MTR_1g025700 32.704 318 188 6 31 329 49 359 1.91e-47 164
MS.gene027049.t1 MTR_3g023220 33.526 346 185 11 27 349 28 351 6.12e-47 163
MS.gene027049.t1 MTR_1g025680 33.908 348 191 8 14 329 4 344 8.81e-47 165
MS.gene027049.t1 MTR_3g114120 32.602 319 187 8 31 329 46 356 2.02e-46 162
MS.gene027049.t1 MTR_5g078210 32.753 287 167 4 11 279 6 284 5.71e-46 159
MS.gene027049.t1 MTR_3g021460 32.861 353 195 13 18 349 17 348 1.30e-45 159
MS.gene027049.t1 MTR_8g087870 30.287 383 203 13 1 351 1 351 1.92e-45 159
MS.gene027049.t1 MTR_2g033920 36.268 284 150 5 18 279 21 295 2.10e-45 157
MS.gene027049.t1 MTR_4g056160 31.804 327 191 8 30 332 25 343 5.33e-45 157
MS.gene027049.t1 MTR_8g031420 30.836 347 199 7 28 349 31 361 5.51e-43 152
MS.gene027049.t1 MTR_8g031390 29.679 374 209 8 13 349 6 362 7.31e-43 152
MS.gene027049.t1 MTR_3g114090 31.988 322 192 7 31 332 35 349 1.22e-42 152
MS.gene027049.t1 MTR_2g017915 34.036 332 184 14 29 349 30 337 4.94e-42 150
MS.gene027049.t1 MTR_8g031430 30.612 343 197 7 32 349 37 363 2.09e-41 149
MS.gene027049.t1 MTR_8g022790 30.460 348 199 10 28 351 33 361 8.27e-41 147
MS.gene027049.t1 MTR_8g075200 29.721 323 198 7 31 332 40 354 8.58e-41 148
MS.gene027049.t1 MTR_8g022810 29.394 330 193 9 32 334 41 357 1.07e-40 147
MS.gene027049.t1 MTR_8g075220 30.909 330 190 8 31 332 39 358 2.09e-40 146
MS.gene027049.t1 MTR_2g017925 31.129 363 196 14 18 349 14 353 4.62e-40 145
MS.gene027049.t1 MTR_2g017875 29.598 348 203 10 26 348 28 358 6.46e-40 144
MS.gene027049.t1 MTR_5g083040 29.412 323 188 8 29 322 29 340 1.67e-39 143
MS.gene027049.t1 MTR_8g031400 28.496 379 220 8 6 349 1 363 3.11e-39 143
MS.gene027049.t1 MTR_2g017965 30.904 343 202 12 29 349 30 359 1.36e-37 139
MS.gene027049.t1 MTR_1g079590 42.623 183 93 4 7 184 1 176 2.53e-37 133
MS.gene027049.t1 MTR_2g017955 29.692 357 212 11 18 348 14 357 4.26e-37 137
MS.gene027049.t1 MTR_1g025910 31.190 311 179 8 37 324 41 339 6.28e-37 137
MS.gene027049.t1 MTR_8g031390 30.721 319 172 7 13 299 6 307 4.11e-35 130
MS.gene027049.t1 MTR_8g022810 27.653 311 170 9 32 334 41 304 1.96e-32 124
MS.gene027049.t1 MTR_1g030268 30.259 347 184 12 31 335 39 369 2.28e-28 114
MS.gene027049.t1 MTR_3g438030 29.679 374 205 15 12 341 3 362 1.08e-27 112
MS.gene027049.t1 MTR_2g018015 28.488 344 173 13 15 348 18 298 1.38e-27 110
MS.gene027049.t1 MTR_7g033165 28.212 358 192 13 31 342 32 370 6.80e-27 109
MS.gene027049.t1 MTR_3g069780 29.815 379 205 16 7 341 1 362 7.32e-27 109
MS.gene027049.t1 MTR_7g033150 27.778 378 201 13 12 335 12 371 1.01e-26 109
MS.gene027049.t1 MTR_2g015580 28.863 343 193 12 32 336 47 376 1.68e-26 108
MS.gene027049.t1 MTR_2g087292 29.012 324 148 10 26 339 27 278 2.16e-26 106
MS.gene027049.t1 MTR_3g463960 29.651 344 190 11 32 336 44 374 3.16e-26 108
MS.gene027049.t1 MTR_3g463950 29.651 344 190 11 32 336 44 374 3.16e-26 108
MS.gene027049.t1 MTR_3g463970 29.651 344 190 11 32 336 44 374 3.16e-26 108
MS.gene027049.t1 MTR_3g463940 29.651 344 190 11 32 336 44 374 3.16e-26 108
MS.gene027049.t1 MTR_3g463930 29.226 349 192 11 32 336 44 381 3.99e-26 107
MS.gene027049.t1 MTR_5g087690 25.767 326 183 8 32 324 50 349 4.00e-26 107
MS.gene027049.t1 MTR_0127s0040 29.536 237 143 6 137 351 4 238 5.01e-26 104
MS.gene027049.t1 MTR_6g007090 27.415 383 212 12 1 335 1 365 1.38e-25 106
MS.gene027049.t1 MTR_2g015630 29.619 341 195 13 37 342 36 366 1.84e-25 105
MS.gene027049.t1 MTR_1g030275 29.107 347 188 11 31 335 38 368 3.55e-25 105
MS.gene027049.t1 MTR_7g116870 25.068 367 224 10 12 342 16 367 2.09e-24 102
MS.gene027049.t1 MTR_1g030340 27.957 372 184 16 31 345 41 385 4.80e-24 102
MS.gene027049.t1 MTR_1g030230 28.177 362 186 13 31 342 31 368 6.61e-24 101
MS.gene027049.t1 MTR_6g007095 28.035 346 190 13 31 335 40 367 7.42e-24 103
MS.gene027049.t1 MTR_6g007095 25.449 334 196 10 36 335 369 683 1.42e-17 84.3
MS.gene027049.t1 MTR_4g036375 35.673 171 100 5 10 179 9 170 1.12e-23 97.1
MS.gene027049.t1 MTR_2g079080 27.913 369 196 16 12 336 3 345 1.96e-23 99.8
MS.gene027049.t1 MTR_1g060490 26.316 323 183 12 30 324 35 330 2.55e-23 99.4
MS.gene027049.t1 MTR_7g033155 26.648 364 191 11 32 335 38 385 3.61e-23 99.8
MS.gene027049.t1 MTR_2g079090 27.642 369 197 16 12 336 3 345 6.27e-23 98.6
MS.gene027049.t1 MTR_1g079570 31.373 153 90 3 202 351 1 141 1.14e-22 92.8
MS.gene027049.t1 MTR_8g038680 28.989 376 200 16 9 335 2 359 3.17e-22 96.7
MS.gene027049.t1 MTR_2g043980 27.624 362 199 11 12 336 12 347 4.44e-22 96.3
MS.gene027049.t1 MTR_1108s0010 29.858 211 117 5 142 332 3 202 4.47e-22 93.2
MS.gene027049.t1 MTR_0029s0050 28.342 374 195 17 7 336 1 345 7.21e-22 95.5
MS.gene027049.t1 MTR_8g028160 26.786 392 207 16 1 335 1 369 1.15e-21 95.1
MS.gene027049.t1 MTR_0029s0100 28.342 374 195 17 7 336 1 345 1.32e-21 94.7
MS.gene027049.t1 MTR_6g007100 27.083 336 195 10 31 335 32 348 1.52e-21 94.7
MS.gene027049.t1 MTR_1g030220 30.372 349 181 18 32 335 40 371 2.10e-21 94.7
MS.gene027049.t1 MTR_2g015590 28.338 367 207 17 17 342 14 365 6.29e-21 93.2
MS.gene027049.t1 MTR_1g060500 26.625 323 184 15 33 324 41 341 2.50e-20 91.3
MS.gene027049.t1 MTR_1g092740 27.679 336 172 16 33 332 39 339 3.29e-20 90.5
MS.gene027049.t1 MTR_2g015650 27.078 373 210 15 11 336 3 360 9.75e-20 89.7
MS.gene027049.t1 MTR_1g030268 29.801 302 158 11 31 294 39 324 1.02e-19 89.0
MS.gene027049.t1 MTR_7g087190 26.923 364 201 13 31 345 42 389 1.07e-19 89.7
MS.gene027049.t1 MTR_4g104240 27.879 330 180 11 33 323 40 350 3.01e-19 88.2
MS.gene027049.t1 MTR_1g082390 24.189 339 199 9 31 326 30 353 8.97e-19 86.7
MS.gene027049.t1 MTR_8g089805 28.205 351 191 14 31 335 39 374 1.37e-18 86.7
MS.gene027049.t1 MTR_6g049220 47.368 95 44 2 30 124 28 116 1.66e-18 82.4
MS.gene027049.t1 MTR_1g030265 30.464 302 153 12 85 342 53 341 2.07e-18 85.5
MS.gene027049.t1 MTR_7g111780 23.529 357 201 12 27 342 31 356 2.23e-18 85.5
MS.gene027049.t1 MTR_7g113860 24.370 357 207 11 31 342 34 372 2.84e-18 85.5
MS.gene027049.t1 MTR_3g069520 28.533 375 206 16 12 341 3 360 5.35e-18 84.3
MS.gene027049.t1 MTR_3g448360 27.568 370 206 17 12 335 3 356 1.33e-17 83.6
MS.gene027049.t1 MTR_7g033165 28.671 286 150 11 31 279 32 300 1.75e-17 82.4
MS.gene027049.t1 MTR_7g113860 24.090 357 208 11 31 342 28 366 3.89e-17 82.0
MS.gene027049.t1 MTR_2g017925 27.311 238 135 9 137 349 26 250 7.15e-17 79.7
MS.gene027049.t1 MTR_5g074210 28.889 135 77 1 211 326 64 198 3.01e-16 77.0
MS.gene027049.t1 MTR_2g015670 25.872 344 188 13 32 336 31 346 2.62e-15 76.6
MS.gene027049.t1 MTR_4g036385 32.673 101 67 1 233 332 27 127 4.00e-15 72.0
MS.gene027049.t1 MTR_4g056220 35.644 101 64 1 233 332 80 180 2.50e-14 71.2
MS.gene027049.t1 MTR_8g012540 26.727 333 193 12 9 304 2 320 4.58e-14 72.8
MS.gene027049.t1 MTR_2g017895 25.101 247 170 7 112 351 29 267 3.33e-12 66.2
MS.gene027049.t1 MTR_7g111780 22.348 264 162 8 111 342 5 257 5.90e-12 65.5
MS.gene027049.t1 MTR_2g043990 27.240 279 176 10 12 278 74 337 4.10e-11 63.9
MS.gene027049.t1 MTR_6g081170 44.565 92 37 4 40 129 1 80 7.31e-11 58.9
MS.gene027049.t1 MTR_2g015590 26.756 299 170 13 17 279 14 299 8.85e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027049.t1 AT5G55050 51.032 339 146 4 31 350 38 375 4.50e-116 341
MS.gene027049.t1 AT3G50400 37.533 381 195 11 7 351 1 374 4.36e-73 231
MS.gene027049.t1 AT1G29660 36.997 373 194 10 7 351 5 364 1.68e-68 219
MS.gene027049.t1 AT5G18430 35.989 364 198 7 13 351 9 362 2.79e-67 216
MS.gene027049.t1 AT5G37690 36.335 322 172 6 34 333 29 339 4.00e-65 210
MS.gene027049.t1 AT4G28780 33.898 354 198 8 24 351 20 363 4.56e-64 208
MS.gene027049.t1 AT3G04290 35.674 356 199 9 18 351 14 361 5.00e-64 207
MS.gene027049.t1 AT5G08460 34.211 342 194 5 31 348 48 382 7.38e-64 208
MS.gene027049.t1 AT1G29670 35.092 379 202 9 1 351 1 363 2.22e-62 203
MS.gene027049.t1 AT1G29670 35.092 379 202 9 1 351 69 431 2.40e-61 202
MS.gene027049.t1 AT4G10950 33.431 341 199 7 30 349 69 402 2.62e-61 202
MS.gene027049.t1 AT5G33370 34.694 343 191 7 32 351 30 362 8.82e-60 197
MS.gene027049.t1 AT5G37690 34.906 318 174 5 34 333 29 331 8.93e-60 196
MS.gene027049.t1 AT1G33811 35.655 359 182 11 26 351 28 370 1.52e-59 196
MS.gene027049.t1 AT2G23540 36.023 347 182 10 32 348 48 384 4.18e-59 196
MS.gene027049.t1 AT1G71250 32.849 344 202 5 29 351 38 373 1.07e-58 194
MS.gene027049.t1 AT5G22810 37.143 350 179 12 12 332 13 350 3.50e-58 192
MS.gene027049.t1 AT3G53100 36.036 333 182 8 11 323 12 333 6.32e-58 191
MS.gene027049.t1 AT5G45670 36.390 349 182 9 30 351 27 362 1.10e-57 191
MS.gene027049.t1 AT4G10950 33.138 341 196 8 30 349 69 398 1.55e-57 192
MS.gene027049.t1 AT1G74460 32.335 334 200 5 13 326 3 330 5.79e-57 189
MS.gene027049.t1 AT1G71691 32.845 341 200 6 30 351 53 383 4.50e-56 187
MS.gene027049.t1 AT1G75890 34.796 319 182 5 28 326 43 355 1.21e-55 186
MS.gene027049.t1 AT1G20120 35.962 317 174 7 31 326 77 385 1.41e-55 187
MS.gene027049.t1 AT4G18970 34.758 351 185 10 30 351 26 361 1.41e-55 186
MS.gene027049.t1 AT1G75890 34.796 319 182 5 28 326 72 384 3.22e-55 186
MS.gene027049.t1 AT5G03810 32.861 353 207 9 1 332 1 344 6.54e-55 184
MS.gene027049.t1 AT4G18970 34.758 351 185 10 30 351 26 361 7.41e-55 185
MS.gene027049.t1 AT5G15720 33.526 346 195 8 31 351 29 364 1.88e-54 183
MS.gene027049.t1 AT5G03820 34.085 355 201 9 1 332 4 348 2.21e-54 182
MS.gene027049.t1 AT5G03820 34.085 355 201 9 1 332 32 376 4.93e-54 182
MS.gene027049.t1 AT1G75890 33.535 331 183 5 28 326 43 368 8.96e-54 181
MS.gene027049.t1 AT5G42170 36.196 326 170 10 31 332 49 360 1.37e-52 178
MS.gene027049.t1 AT1G75880 34.462 325 187 5 30 334 50 368 3.36e-52 177
MS.gene027049.t1 AT5G45960 33.228 316 178 8 32 322 47 354 4.34e-52 177
MS.gene027049.t1 AT1G75880 34.568 324 185 6 31 334 51 367 1.87e-51 175
MS.gene027049.t1 AT5G41890 31.720 372 207 12 13 348 12 372 1.82e-50 172
MS.gene027049.t1 AT2G30310 33.036 336 181 9 31 335 33 355 2.42e-50 172
MS.gene027049.t1 AT2G42990 32.362 343 199 9 14 333 10 342 6.22e-50 171
MS.gene027049.t1 AT3G16370 34.688 320 179 8 27 324 25 336 1.22e-49 170
MS.gene027049.t1 AT3G14820 34.132 334 179 11 31 339 31 348 1.46e-49 169
MS.gene027049.t1 AT2G30220 32.308 325 188 6 31 330 32 349 6.76e-49 168
MS.gene027049.t1 AT2G40250 33.856 319 176 7 32 324 36 345 7.04e-49 168
MS.gene027049.t1 AT1G06990 32.278 316 184 6 31 324 36 343 3.97e-48 166
MS.gene027049.t1 AT1G53920 31.156 398 210 13 2 351 3 384 1.29e-47 166
MS.gene027049.t1 AT1G58430 32.558 344 198 8 12 329 11 346 3.15e-47 164
MS.gene027049.t1 AT1G75920 32.676 355 190 11 6 332 1 334 7.70e-47 162
MS.gene027049.t1 AT3G43570 34.603 315 180 9 31 343 29 319 2.21e-46 160
MS.gene027049.t1 AT1G59406 34.234 333 186 10 31 343 29 348 3.22e-46 161
MS.gene027049.t1 AT1G59030 34.234 333 186 10 31 343 29 348 3.22e-46 161
MS.gene027049.t1 AT1G58725 34.234 333 186 10 31 343 29 348 3.22e-46 161
MS.gene027049.t1 AT1G75900 32.099 324 192 6 31 334 42 357 6.20e-46 160
MS.gene027049.t1 AT1G71120 31.085 341 205 8 27 348 26 355 1.45e-45 159
MS.gene027049.t1 AT2G31540 32.121 330 192 6 31 335 34 356 1.66e-45 159
MS.gene027049.t1 AT1G20130 34.043 329 181 10 26 326 198 518 2.19e-45 162
MS.gene027049.t1 AT1G20130 33.837 331 183 10 26 328 178 500 2.54e-45 162
MS.gene027049.t1 AT4G26790 33.648 318 176 12 29 322 26 332 4.91e-45 158
MS.gene027049.t1 AT4G26790 33.648 318 176 12 29 322 26 332 4.91e-45 158
MS.gene027049.t1 AT2G04570 32.635 334 186 10 27 334 23 343 7.16e-45 157
MS.gene027049.t1 AT2G24560 32.209 326 187 8 31 330 33 350 7.81e-45 157
MS.gene027049.t1 AT1G58520 34.234 333 179 11 31 343 29 341 8.24e-45 157
MS.gene027049.t1 AT1G58525 34.234 333 179 11 31 343 29 341 8.24e-45 157
MS.gene027049.t1 AT5G40990 31.700 347 200 9 32 351 37 373 1.46e-44 157
MS.gene027049.t1 AT1G20132 31.348 319 184 8 28 322 57 364 2.40e-44 157
MS.gene027049.t1 AT2G03980 34.483 319 170 10 31 324 42 346 2.44e-44 156
MS.gene027049.t1 AT2G03980 34.483 319 170 10 31 324 42 346 2.44e-44 156
MS.gene027049.t1 AT2G03980 34.483 319 170 10 31 324 42 346 2.44e-44 156
MS.gene027049.t1 AT2G03980 34.483 319 170 10 31 324 42 346 2.44e-44 156
MS.gene027049.t1 AT4G16230 39.556 225 122 5 12 231 10 225 3.04e-43 150
MS.gene027049.t1 AT1G20135 31.962 316 170 10 32 324 29 322 7.77e-43 151
MS.gene027049.t1 AT1G75920 31.073 354 184 10 19 332 11 344 7.53e-42 149
MS.gene027049.t1 AT1G75930 30.117 342 200 8 6 324 1 326 1.14e-41 149
MS.gene027049.t1 AT2G19060 31.143 350 192 12 25 349 23 348 1.35e-41 149
MS.gene027049.t1 AT2G19010 30.904 343 192 12 4 323 2 322 2.71e-41 148
MS.gene027049.t1 AT1G75910 32.622 328 175 12 31 332 27 334 2.93e-41 147
MS.gene027049.t1 AT2G19010 31.176 340 189 12 7 323 35 352 5.95e-41 147
MS.gene027049.t1 AT5G63170 31.487 343 194 12 1 324 1 321 1.96e-40 145
MS.gene027049.t1 AT1G73610 32.278 316 164 10 32 322 35 325 3.46e-39 142
MS.gene027049.t1 AT1G71691 28.472 288 179 4 83 351 3 282 5.72e-39 140
MS.gene027049.t1 AT1G53990 29.060 351 197 10 32 351 35 364 7.80e-39 142
MS.gene027049.t1 AT3G14225 28.000 350 209 8 32 351 37 373 1.03e-38 142
MS.gene027049.t1 AT5G45950 28.990 307 193 8 32 322 40 337 1.04e-38 141
MS.gene027049.t1 AT2G19050 30.612 343 201 11 27 351 26 349 2.38e-38 140
MS.gene027049.t1 AT1G53940 29.971 347 206 9 32 351 39 375 2.63e-38 140
MS.gene027049.t1 AT3G14225 27.887 355 207 9 32 351 37 377 3.90e-38 140
MS.gene027049.t1 AT4G30140 31.124 347 190 14 26 349 27 347 4.18e-38 139
MS.gene027049.t1 AT1G75920 29.060 351 177 9 6 332 1 303 1.54e-37 137
MS.gene027049.t1 AT5G15720 29.352 293 175 6 84 351 48 333 9.29e-36 133
MS.gene027049.t1 AT1G54030 26.488 336 205 7 33 351 53 363 1.77e-34 131
MS.gene027049.t1 AT5G15720 33.942 274 146 8 31 279 29 292 2.04e-34 129
MS.gene027049.t1 AT1G71691 32.342 269 153 6 30 279 53 311 3.38e-34 128
MS.gene027049.t1 AT5G33370 33.088 272 147 8 32 279 30 290 9.04e-34 127
MS.gene027049.t1 AT1G75920 30.640 297 162 8 61 332 29 306 1.40e-33 126
MS.gene027049.t1 AT2G04020 33.555 301 155 11 31 324 42 304 1.76e-32 124
MS.gene027049.t1 AT1G23500 28.736 348 197 10 17 338 20 342 5.39e-32 123
MS.gene027049.t1 AT2G04020 37.438 203 114 4 31 231 42 233 6.97e-31 118
MS.gene027049.t1 AT3G43550 33.582 268 149 8 31 279 29 286 1.17e-30 118
MS.gene027049.t1 AT2G19050 31.086 267 156 7 27 280 26 277 2.94e-29 114
MS.gene027049.t1 AT5G14450 29.345 351 185 12 31 335 40 373 3.31e-29 116
MS.gene027049.t1 AT2G24560 30.909 275 159 7 31 282 33 299 3.84e-28 112
MS.gene027049.t1 AT1G28650 28.652 356 200 12 26 342 31 371 8.05e-27 109
MS.gene027049.t1 AT2G27360 29.023 348 188 14 32 336 33 364 1.71e-26 108
MS.gene027049.t1 AT1G54010 26.496 351 210 9 25 349 27 355 2.69e-26 108
MS.gene027049.t1 AT1G31550 28.760 379 210 16 1 336 4 365 3.74e-26 108
MS.gene027049.t1 AT1G54000 25.926 351 210 9 25 348 27 354 6.87e-26 107
MS.gene027049.t1 AT1G28670 28.889 360 195 14 26 342 29 370 7.53e-26 107
MS.gene027049.t1 AT1G28610 29.442 394 193 18 1 342 4 364 1.03e-25 106
MS.gene027049.t1 AT1G54020 24.496 347 217 9 25 349 24 347 3.26e-25 105
MS.gene027049.t1 AT1G28660 28.010 382 217 13 3 342 4 369 5.96e-25 104
MS.gene027049.t1 AT1G28660 28.534 382 214 13 3 342 4 368 7.46e-25 104
MS.gene027049.t1 AT3G14220 25.401 374 222 15 8 350 5 352 1.05e-24 103
MS.gene027049.t1 AT1G28580 26.842 380 211 14 4 336 8 367 3.07e-24 102
MS.gene027049.t1 AT1G54030 26.616 263 153 5 33 278 53 292 4.39e-24 100
MS.gene027049.t1 AT1G54790 25.191 393 231 11 1 348 1 375 1.24e-23 100
MS.gene027049.t1 AT1G28640 29.006 362 191 16 26 342 29 369 2.90e-23 99.8
MS.gene027049.t1 AT3G48460 27.089 347 199 12 33 342 39 368 3.17e-23 99.8
MS.gene027049.t1 AT1G28600 26.329 395 204 15 1 342 4 364 4.38e-23 99.4
MS.gene027049.t1 AT1G31550 28.232 379 209 17 1 336 4 362 5.69e-23 99.0
MS.gene027049.t1 AT3G27950 28.902 346 186 13 31 335 31 357 6.50e-23 98.6
MS.gene027049.t1 AT3G62280 28.652 356 191 13 26 344 30 359 6.58e-23 98.6
MS.gene027049.t1 AT1G28570 27.536 345 196 11 32 336 34 364 7.47e-23 98.6
MS.gene027049.t1 AT5G03610 25.538 372 203 17 1 327 1 343 1.43e-22 97.4
MS.gene027049.t1 AT3G09930 27.410 332 185 13 33 333 40 346 1.60e-22 97.4
MS.gene027049.t1 AT3G09930 27.410 332 185 13 33 333 40 346 1.60e-22 97.4
MS.gene027049.t1 AT1G67830 26.404 356 197 13 31 338 29 367 4.62e-22 96.3
MS.gene027049.t1 AT1G53940 29.368 269 159 8 32 279 39 297 9.34e-22 94.4
MS.gene027049.t1 AT1G56670 27.003 337 175 12 31 324 39 347 2.47e-21 94.4
MS.gene027049.t1 AT2G31550 29.319 191 108 4 166 332 22 209 4.75e-21 90.5
MS.gene027049.t1 AT4G01130 23.773 387 231 9 1 339 1 371 5.27e-21 93.6
MS.gene027049.t1 AT3G14210 24.207 347 209 11 32 349 36 357 2.41e-19 88.6
MS.gene027049.t1 AT1G54790 24.176 364 211 12 31 348 30 374 4.14e-19 87.8
MS.gene027049.t1 AT4G16233 36.667 120 75 1 233 351 11 130 4.45e-19 82.8
MS.gene027049.t1 AT1G09390 25.664 339 185 12 27 324 32 344 6.76e-18 84.3
MS.gene027049.t1 AT4G16220 43.103 116 55 5 14 127 11 117 3.35e-17 80.5
MS.gene027049.t1 AT5G45910 27.792 385 213 18 7 342 1 369 8.85e-17 80.9
MS.gene027049.t1 AT3G26430 25.255 392 209 15 1 335 1 365 9.70e-17 80.9
MS.gene027049.t1 AT1G54020 22.835 254 165 5 115 349 20 261 2.27e-15 75.9
MS.gene027049.t1 AT1G54020 22.835 254 165 5 115 349 20 261 2.27e-15 75.9
MS.gene027049.t1 AT1G54020 22.835 254 165 5 115 349 20 261 2.27e-15 75.9
MS.gene027049.t1 AT5G03600 22.892 332 211 11 24 334 6 313 2.30e-15 76.3
MS.gene027049.t1 AT5G03600 23.123 333 209 12 24 334 41 348 2.98e-15 76.3
MS.gene027049.t1 AT2G36325 26.061 330 185 15 29 327 44 345 1.20e-14 74.7
MS.gene027049.t1 AT1G56670 25.784 287 147 10 31 279 39 297 2.43e-14 73.2
MS.gene027049.t1 AT1G54790 22.564 390 211 13 31 348 30 400 3.40e-14 73.6
MS.gene027049.t1 AT4G01130 24.038 208 119 4 168 339 81 285 4.21e-14 72.4
MS.gene027049.t1 AT1G54020 21.951 205 141 2 165 350 9 213 1.46e-13 70.1
MS.gene027049.t1 AT5G03590 34.177 158 86 8 26 183 29 168 2.06e-12 65.9
MS.gene027049.t1 AT4G01130 23.567 314 189 7 1 279 1 298 6.31e-12 66.2
MS.gene027049.t1 AT3G62280 26.573 286 154 10 26 279 30 291 8.30e-11 62.8

Find 66 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATCATACCATAAGATTT+TGG 0.177747 3.3:+43494581 None:intergenic
TCCAATCACAACAGCAAATA+TGG 0.234293 3.3:+43495322 None:intergenic
ATACACATCTCCTATTAATA+TGG 0.267773 3.3:-43494191 MS.gene027049:CDS
AGTAGTTGTTCCATATTAAT+AGG 0.271135 3.3:+43494181 None:intergenic
CAAGAAGAATGTATCATTCT+TGG 0.275076 3.3:-43495883 MS.gene027049:CDS
ATTGGAAGCAATGATATATT+TGG 0.284679 3.3:-43495305 MS.gene027049:CDS
GCAAGGAAATTTGAGATTAT+TGG 0.299184 3.3:-43494797 MS.gene027049:CDS
ACTCCAGCTATTTATGTGTT+TGG 0.300822 3.3:-43496869 MS.gene027049:CDS
GGAGGTGCTGGAATATTTAA+TGG 0.318006 3.3:-43495840 MS.gene027049:CDS
TGAATTCCTCATCATAACTA+TGG 0.325372 3.3:+43496949 None:intergenic
TGCTTTATCTTCTTCAGCTT+AGG 0.325670 3.3:-43496911 MS.gene027049:CDS
CTCCCAGTTGGTTTCTTAGT+TGG 0.330907 3.3:+43496761 None:intergenic
ATTCAAAATCCAAAATCTTA+TGG 0.335982 3.3:-43494590 MS.gene027049:intron
ATAGACAAGACCATATCTTT+TGG 0.336790 3.3:-43494282 MS.gene027049:CDS
GCTTTATCTTCTTCAGCTTA+GGG 0.344576 3.3:-43496910 MS.gene027049:CDS
ATTATTGGTGTTAGTACAAT+TGG 0.346616 3.3:-43494782 MS.gene027049:CDS
TGAATTTGATCTTAGATACT+AGG 0.374264 3.3:+43495907 None:intergenic
TTGGTACAAATGATTGAAAT+TGG 0.376000 3.3:+43494304 None:intergenic
TTTCCAACTAAGAAACCAAC+TGG 0.387725 3.3:-43496764 MS.gene027049:CDS
GATGGTGTTAACTTTGCATC+TGG 0.388379 3.3:-43495861 MS.gene027049:CDS
AAAGATATGGTCTTGTCTAT+TGG 0.388766 3.3:+43494285 None:intergenic
TCCATATTTGCTGTTGTGAT+TGG 0.392832 3.3:-43495323 MS.gene027049:CDS
GGAATTGATCCCAAAAGATA+TGG 0.407672 3.3:+43494272 None:intergenic
TTTGTGGATAGACTTTATAA+TGG 0.407701 3.3:-43494223 MS.gene027049:CDS
AACTTTGCATCTGGAGGTGC+TGG 0.420986 3.3:-43495852 MS.gene027049:CDS
ATTCCTTCAACATGGATTGA+AGG 0.436326 3.3:+43494678 None:intergenic
CTTGAGTCTTTCCCTTGTAA+AGG 0.443582 3.3:-43496813 MS.gene027049:CDS
AAAGATGCTTGTTGTGGACT+TGG 0.443661 3.3:-43494355 MS.gene027049:CDS
GAGGAAGAGTTGCCTTTACA+AGG 0.471138 3.3:+43496801 None:intergenic
AAGGCAACTCTTCCTCACTA+TGG 0.475947 3.3:-43496794 MS.gene027049:CDS
AGTCCTTCAATCCATGTTGA+AGG 0.493033 3.3:-43494681 MS.gene027049:CDS
TGGAATCCACATATTGTTGT+GGG 0.512093 3.3:+43495246 None:intergenic
GGTAAGGCGGTGACGTGGCA+AGG 0.514735 3.3:+43495934 None:intergenic
TCTCCAAACACATAAATAGC+TGG 0.525047 3.3:+43496866 None:intergenic
AAATACCCCACAACAATATG+TGG 0.527276 3.3:-43495252 MS.gene027049:CDS
CCATTGCTAAACCTCCCAGT+TGG 0.530428 3.3:+43496749 None:intergenic
GAATTTGATCTTAGATACTA+GGG 0.531043 3.3:+43495908 None:intergenic
GGAGACTCACTTGTTGATGT+TGG 0.537578 3.3:-43496848 MS.gene027049:CDS
TTCACTAAAAGTGCAACTAC+AGG 0.538641 3.3:-43495216 MS.gene027049:intron
TAGTCCACTTGCTTTGTCAA+AGG 0.561170 3.3:+43495416 None:intergenic
TTAGATACTAGGGAGAGGTA+AGG 0.561306 3.3:+43495918 None:intergenic
ATGGAATCCACATATTGTTG+TGG 0.565462 3.3:+43495245 None:intergenic
GGAATTGAAATTTGTAAACA+AGG 0.576643 3.3:-43494660 MS.gene027049:CDS
AATACCTTTGACAAAGCAAG+TGG 0.577012 3.3:-43495420 MS.gene027049:CDS
ACAACAATATGTGGATTCCA+TGG 0.579220 3.3:-43495243 MS.gene027049:CDS
AAATTTCAATTCCTTCAACA+TGG 0.581049 3.3:+43494670 None:intergenic
GGTGTTAACTTTGCATCTGG+AGG 0.589960 3.3:-43495858 MS.gene027049:CDS
TTGCGTGTGGCTGCCTCAGT+AGG 0.592814 3.3:+43494247 None:intergenic
TGGCAGAGATTATACAACAA+TGG 0.595253 3.3:-43494821 MS.gene027049:intron
AAGAATGTATCATTCTTGGA+TGG 0.603461 3.3:-43495879 MS.gene027049:CDS
TGATCTTAGATACTAGGGAG+AGG 0.608423 3.3:+43495913 None:intergenic
ATTTGGTTACTATAACTCAA+AGG 0.608949 3.3:-43495288 MS.gene027049:CDS
GATTATACAACAATGGTGCA+AGG 0.618113 3.3:-43494814 MS.gene027049:CDS
TGGATTCCATAGTTATGATG+AGG 0.628870 3.3:-43496955 MS.gene027049:CDS
GGAAAATCAATGCCATAGTG+AGG 0.638073 3.3:+43496782 None:intergenic
GTGTGGCTGCCTCAGTAGGA+TGG 0.648960 3.3:+43494251 None:intergenic
AGGAAGAGTTGCCTTTACAA+GGG 0.649246 3.3:+43496802 None:intergenic
GGAGAGGTAAGGCGGTGACG+TGG 0.654883 3.3:+43495929 None:intergenic
GGATCAATTCCATCCTACTG+AGG 0.665992 3.3:-43494260 MS.gene027049:CDS
CAACTAAGAAACCAACTGGG+AGG 0.671928 3.3:-43496760 MS.gene027049:CDS
TCTATCCACAAAATTGCGTG+TGG 0.672365 3.3:+43494234 None:intergenic
GATACTAGGGAGAGGTAAGG+CGG 0.676366 3.3:+43495921 None:intergenic
TTCCAACTAAGAAACCAACT+GGG 0.678656 3.3:-43496763 MS.gene027049:CDS
GGAATCCACATATTGTTGTG+GGG 0.681569 3.3:+43495247 None:intergenic
CCAACTGGGAGGTTTAGCAA+TGG 0.692546 3.3:-43496749 MS.gene027049:CDS
GATGTGAAAGATGCTTGTTG+TGG 0.712160 3.3:-43494361 MS.gene027049:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAAAAAAATTAATAAA+TGG - chr3.3:43496170-43496189 MS.gene027049:intron 0.0%
!!! ATAATTTTTTATTTTTTTTT+TGG + chr3.3:43496609-43496628 None:intergenic 0.0%
!!! ACTTTTATATATATTTTTTC+AGG - chr3.3:43496736-43496755 MS.gene027049:CDS 10.0%
!!! ATATTGTTTCAATTTTTTAT+TGG - chr3.3:43495089-43495108 MS.gene027049:intron 10.0%
!!! TATTGTTTCAATTTTTTATT+GGG - chr3.3:43495090-43495109 MS.gene027049:intron 10.0%
!!! TTTAGTTTCTATATTTAAAT+AGG + chr3.3:43494530-43494549 None:intergenic 10.0%
!!! ATTGTTTCAATTTTTTATTG+GGG - chr3.3:43495091-43495110 MS.gene027049:intron 15.0%
!!! ATTTACATGCATTTTAATTT+TGG - chr3.3:43496270-43496289 MS.gene027049:intron 15.0%
!! AATAAATTTGTAGTCCAAAA+AGG - chr3.3:43495384-43495403 MS.gene027049:CDS 20.0%
!! AATCATCTTAAATTCCAAAT+TGG + chr3.3:43494966-43494985 None:intergenic 20.0%
!! AATGGAATTAGTAATTTGAA+AGG - chr3.3:43496188-43496207 MS.gene027049:intron 20.0%
!! ACAATATGTAAAAACAGAAA+TGG + chr3.3:43495362-43495381 None:intergenic 20.0%
!! AGCTTAGAATTTAAGTAATT+TGG - chr3.3:43494922-43494941 MS.gene027049:intron 20.0%
!! ATTCAAAATCCAAAATCTTA+TGG - chr3.3:43496537-43496556 MS.gene027049:intron 20.0%
!!! ATTTTAACTCTTTTGCAATA+TGG + chr3.3:43496243-43496262 None:intergenic 20.0%
!!! CATTTTGGTAAAATAATTCT+TGG - chr3.3:43496682-43496701 MS.gene027049:intron 20.0%
!!! TCTTCTTAGAATTATCATTT+TGG - chr3.3:43496667-43496686 MS.gene027049:intron 20.0%
!!! TTTTAAATGTTATTTTGTCG+AGG - chr3.3:43494714-43494733 MS.gene027049:intron 20.0%
! AAATTTCAATTCCTTCAACA+TGG + chr3.3:43496460-43496479 None:intergenic 25.0%
! ACTGGTAAGAAAAATTAGTA+GGG - chr3.3:43496019-43496038 MS.gene027049:intron 25.0%
! AGTAGTTGTTCCATATTAAT+AGG + chr3.3:43496949-43496968 None:intergenic 25.0%
! ATACACATCTCCTATTAATA+TGG - chr3.3:43496936-43496955 MS.gene027049:CDS 25.0%
! ATTGGAAGCAATGATATATT+TGG - chr3.3:43495822-43495841 MS.gene027049:intron 25.0%
! ATTTGGTTACTATAACTCAA+AGG - chr3.3:43495839-43495858 MS.gene027049:CDS 25.0%
! GAATTTGATCTTAGATACTA+GGG + chr3.3:43495222-43495241 None:intergenic 25.0%
! GGAATTGAAATTTGTAAACA+AGG - chr3.3:43496467-43496486 MS.gene027049:intron 25.0%
! GTATTATAGCAAAAGAAGAT+TGG + chr3.3:43494486-43494505 None:intergenic 25.0%
! TATATAATGCAAAGAGACAT+AGG + chr3.3:43496584-43496603 None:intergenic 25.0%
! TCCAAAAATATAATGCGTTT+CGG + chr3.3:43495014-43495033 None:intergenic 25.0%
! TGAAAGGATGCTTATATATA+CGG - chr3.3:43496204-43496223 MS.gene027049:intron 25.0%
! TGAATTTGATCTTAGATACT+AGG + chr3.3:43495223-43495242 None:intergenic 25.0%
! TTGGTACAAATGATTGAAAT+TGG + chr3.3:43496826-43496845 None:intergenic 25.0%
! TTTGTGGATAGACTTTATAA+TGG - chr3.3:43496904-43496923 MS.gene027049:CDS 25.0%
!! AAGATTTTGGATTTTGAATG+AGG + chr3.3:43496536-43496555 None:intergenic 25.0%
!! TGAATCATACCATAAGATTT+TGG + chr3.3:43496549-43496568 None:intergenic 25.0%
!!! ATTATTGGTGTTAGTACAAT+TGG - chr3.3:43496345-43496364 MS.gene027049:intron 25.0%
!!! CATGCATTTTAATTTTGGTT+TGG - chr3.3:43496275-43496294 MS.gene027049:intron 25.0%
!!! TAAGATGATTTGTTATGCTA+TGG - chr3.3:43494976-43494995 MS.gene027049:intron 25.0%
AAGAATGTATCATTCTTGGA+TGG - chr3.3:43495248-43495267 MS.gene027049:CDS 30.0%
AGAGCACATTGGATATAAAA+GGG - chr3.3:43495044-43495063 MS.gene027049:intron 30.0%
AGTCAAGATATTGACATTGA+TGG + chr3.3:43495527-43495546 None:intergenic 30.0%
ATAATTCTTGGATTGTTGTG+AGG - chr3.3:43496694-43496713 MS.gene027049:intron 30.0%
ATTGTTGCAGCTGAAAAATT+AGG - chr3.3:43495170-43495189 MS.gene027049:intron 30.0%
CAAGAAGAATGTATCATTCT+TGG - chr3.3:43495244-43495263 MS.gene027049:CDS 30.0%
CACTGGTAAGAAAAATTAGT+AGG - chr3.3:43496018-43496037 MS.gene027049:intron 30.0%
CATCTTAAATTCCAAATTGG+TGG + chr3.3:43494963-43494982 None:intergenic 30.0%
TGAATTCCTCATCATAACTA+TGG + chr3.3:43494181-43494200 None:intergenic 30.0%
TTCACATGTTCTAGTATAGT+TGG + chr3.3:43494841-43494860 None:intergenic 30.0%
TTGTATAATCTCTGCCAAAA+AGG + chr3.3:43496303-43496322 None:intergenic 30.0%
! AAGAGCACATTGGATATAAA+AGG - chr3.3:43495043-43495062 MS.gene027049:intron 30.0%
! AATTAACTCAAAGAGCACAT+TGG - chr3.3:43495033-43495052 MS.gene027049:intron 30.0%
! ACCGAAACGCATTATATTTT+TGG - chr3.3:43495010-43495029 MS.gene027049:intron 30.0%
! ATAGACAAGACCATATCTTT+TGG - chr3.3:43496845-43496864 MS.gene027049:CDS 30.0%
! GCAAGGAAATTTGAGATTAT+TGG - chr3.3:43496330-43496349 MS.gene027049:intron 30.0%
! TAGACAAGACCATATCTTTT+GGG - chr3.3:43496846-43496865 MS.gene027049:CDS 30.0%
! TAGAGTGCAAAATTCCTTTT+TGG + chr3.3:43495401-43495420 None:intergenic 30.0%
! TTTTGCACTCTAACTAAAGA+CGG - chr3.3:43495409-43495428 MS.gene027049:CDS 30.0%
!! AAAAATGCTGCTGATTTGAT+TGG - chr3.3:43494402-43494421 MS.gene027049:intron 30.0%
!! AAAGATATGGTCTTGTCTAT+TGG + chr3.3:43496845-43496864 None:intergenic 30.0%
!! ATAGGAGATGTGTATTTTGA+AGG + chr3.3:43496931-43496950 None:intergenic 30.0%
!!! ATTTTGGTTTGGTACCTTTT+TGG - chr3.3:43496286-43496305 MS.gene027049:intron 30.0%
AAATACCCCACAACAATATG+TGG - chr3.3:43495875-43495894 MS.gene027049:CDS 35.0%
AATACCTTTGACAAAGCAAG+TGG - chr3.3:43495707-43495726 MS.gene027049:intron 35.0%
ACAACAATATGTGGATTCCA+TGG - chr3.3:43495884-43495903 MS.gene027049:CDS 35.0%
ACTCCAGCTATTTATGTGTT+TGG - chr3.3:43494258-43494277 MS.gene027049:CDS 35.0%
ATGGAATCCACATATTGTTG+TGG + chr3.3:43495885-43495904 None:intergenic 35.0%
CACATTGGATATAAAAGGGT+GGG - chr3.3:43495048-43495067 MS.gene027049:intron 35.0%
GAGCTTATGAAAAGAAACGA+AGG + chr3.3:43495985-43496004 None:intergenic 35.0%
GATTATACAACAATGGTGCA+AGG - chr3.3:43496313-43496332 MS.gene027049:intron 35.0%
GCTTTATCTTCTTCAGCTTA+GGG - chr3.3:43494217-43494236 MS.gene027049:CDS 35.0%
GGAATTGATCCCAAAAGATA+TGG + chr3.3:43496858-43496877 None:intergenic 35.0%
TCCAATCACAACAGCAAATA+TGG + chr3.3:43495808-43495827 None:intergenic 35.0%
TCTCCAAACACATAAATAGC+TGG + chr3.3:43494264-43494283 None:intergenic 35.0%
TGCTTTATCTTCTTCAGCTT+AGG - chr3.3:43494216-43494235 MS.gene027049:CDS 35.0%
TGGAATCCACATATTGTTGT+GGG + chr3.3:43495884-43495903 None:intergenic 35.0%
TGGATTCCATAGTTATGATG+AGG - chr3.3:43494172-43494191 MS.gene027049:CDS 35.0%
TGGCAGAGATTATACAACAA+TGG - chr3.3:43496306-43496325 MS.gene027049:intron 35.0%
TGTAAAAACAGAAATGGCGA+AGG + chr3.3:43495356-43495375 None:intergenic 35.0%
TTCCAACTAAGAAACCAACT+GGG - chr3.3:43494364-43494383 MS.gene027049:CDS 35.0%
TTTCCAACTAAGAAACCAAC+TGG - chr3.3:43494363-43494382 MS.gene027049:CDS 35.0%
! ATTCCTTCAACATGGATTGA+AGG + chr3.3:43496452-43496471 None:intergenic 35.0%
! ATTTTGAATGAGGTCTTGGA+GGG + chr3.3:43496526-43496545 None:intergenic 35.0%
! CAGCAAATATGGATTTTGAG+AGG + chr3.3:43495797-43495816 None:intergenic 35.0%
! GCTCTTTTGTCAATTTTCAC+TGG - chr3.3:43496001-43496020 MS.gene027049:intron 35.0%
! TGACATTGATGGATCAAGAT+TGG + chr3.3:43495516-43495535 None:intergenic 35.0%
! TTCACTAAAAGTGCAACTAC+AGG - chr3.3:43495911-43495930 MS.gene027049:CDS 35.0%
! TTGGATTTTGAATGAGGTCT+TGG + chr3.3:43496530-43496549 None:intergenic 35.0%
!! AAAAGTGCCATTCTCAAAGT+TGG + chr3.3:43494889-43494908 None:intergenic 35.0%
!! TCCATATTTGCTGTTGTGAT+TGG - chr3.3:43495804-43495823 MS.gene027049:intron 35.0%
AGGAAGAGTTGCCTTTACAA+GGG + chr3.3:43494328-43494347 None:intergenic 40.0%
AGTCCTTCAATCCATGTTGA+AGG - chr3.3:43496446-43496465 MS.gene027049:intron 40.0%
ATTCTTGGATTGTTGTGAGG+AGG - chr3.3:43496697-43496716 MS.gene027049:intron 40.0%
CTTGAGTCTTTCCCTTGTAA+AGG - chr3.3:43494314-43494333 MS.gene027049:CDS 40.0%
GAGCTTAGAAACCACCAATT+TGG - chr3.3:43494949-43494968 MS.gene027049:intron 40.0%
GCAACTACAGGTAAACACAA+TGG - chr3.3:43495923-43495942 MS.gene027049:CDS 40.0%
GCACATTGGATATAAAAGGG+TGG - chr3.3:43495047-43495066 MS.gene027049:intron 40.0%
GGAAAATCAATGCCATAGTG+AGG + chr3.3:43494348-43494367 None:intergenic 40.0%
GGAATCCACATATTGTTGTG+GGG + chr3.3:43495883-43495902 None:intergenic 40.0%
TAGTCCACTTGCTTTGTCAA+AGG + chr3.3:43495714-43495733 None:intergenic 40.0%
TCTATCCACAAAATTGCGTG+TGG + chr3.3:43496896-43496915 None:intergenic 40.0%
TGATCTTAGATACTAGGGAG+AGG + chr3.3:43495217-43495236 None:intergenic 40.0%
TTAGATACTAGGGAGAGGTA+AGG + chr3.3:43495212-43495231 None:intergenic 40.0%
! CACTTTTAGTGAAGAAGCCA+TGG + chr3.3:43495904-43495923 None:intergenic 40.0%
! GATGGTGTTAACTTTGCATC+TGG - chr3.3:43495266-43495285 MS.gene027049:CDS 40.0%
! GATGTGAAAGATGCTTGTTG+TGG - chr3.3:43496766-43496785 MS.gene027049:CDS 40.0%
! GATTTTGAATGAGGTCTTGG+AGG + chr3.3:43496527-43496546 None:intergenic 40.0%
!! AAAGATGCTTGTTGTGGACT+TGG - chr3.3:43496772-43496791 MS.gene027049:CDS 40.0%
!! GGAGGTGCTGGAATATTTAA+TGG - chr3.3:43495287-43495306 MS.gene027049:CDS 40.0%
AAGGCAACTCTTCCTCACTA+TGG - chr3.3:43494333-43494352 MS.gene027049:CDS 45.0%
CAACTAAGAAACCAACTGGG+AGG - chr3.3:43494367-43494386 MS.gene027049:CDS 45.0%
GAGGAAGAGTTGCCTTTACA+AGG + chr3.3:43494329-43494348 None:intergenic 45.0%
GGATCAATTCCATCCTACTG+AGG - chr3.3:43496867-43496886 MS.gene027049:CDS 45.0%
GGTGTTAACTTTGCATCTGG+AGG - chr3.3:43495269-43495288 MS.gene027049:CDS 45.0%
TTGGATGTTGTCCTGCATTG+AGG - chr3.3:43496364-43496383 MS.gene027049:intron 45.0%
TTGTTCTTGAGCCTCAATGC+AGG + chr3.3:43496378-43496397 None:intergenic 45.0%
! AGTGCCATTCTCAAAGTTGG+TGG + chr3.3:43494886-43494905 None:intergenic 45.0%
! CTCCCAGTTGGTTTCTTAGT+TGG + chr3.3:43494369-43494388 None:intergenic 45.0%
! GAAGCCACCAACTTTGAGAA+TGG - chr3.3:43494879-43494898 MS.gene027049:intron 45.0%
! GGAGACTCACTTGTTGATGT+TGG - chr3.3:43494279-43494298 MS.gene027049:CDS 45.0%
!! CTCAAAGTTGGTGGCTTCTA+AGG + chr3.3:43494877-43494896 None:intergenic 45.0%
!! AAATAAAAAATTATATTAGA+TGG - chr3.3:43496615-43496634 MS.gene027049:intron 5.0%
!!! TTTTAATTTTTTTTTTTTAC+TGG - chr3.3:43495560-43495579 MS.gene027049:intron 5.0%
CCAACTGGGAGGTTTAGCAA+TGG - chr3.3:43494378-43494397 MS.gene027049:intron 50.0%
CCATTGCTAAACCTCCCAGT+TGG + chr3.3:43494381-43494400 None:intergenic 50.0%
GATACTAGGGAGAGGTAAGG+CGG + chr3.3:43495209-43495228 None:intergenic 50.0%
! AACTTTGCATCTGGAGGTGC+TGG - chr3.3:43495275-43495294 MS.gene027049:CDS 50.0%
! GGCAGCCACACGCAATTTTG+TGG - chr3.3:43496888-43496907 MS.gene027049:CDS 55.0%
GTGTGGCTGCCTCAGTAGGA+TGG + chr3.3:43496879-43496898 None:intergenic 60.0%
TTGCGTGTGGCTGCCTCAGT+AGG + chr3.3:43496883-43496902 None:intergenic 60.0%
GGAGAGGTAAGGCGGTGACG+TGG + chr3.3:43495201-43495220 None:intergenic 65.0%
GGTAAGGCGGTGACGTGGCA+AGG + chr3.3:43495196-43495215 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 43494171 43496978 43494171 ID=MS.gene027049
chr3.3 mRNA 43494171 43496978 43494171 ID=MS.gene027049.t1;Parent=MS.gene027049
chr3.3 exon 43496726 43496978 43496726 ID=MS.gene027049.t1.exon1;Parent=MS.gene027049.t1
chr3.3 CDS 43496726 43496978 43496726 ID=cds.MS.gene027049.t1;Parent=MS.gene027049.t1
chr3.3 exon 43495824 43495969 43495824 ID=MS.gene027049.t1.exon2;Parent=MS.gene027049.t1
chr3.3 CDS 43495824 43495969 43495824 ID=cds.MS.gene027049.t1;Parent=MS.gene027049.t1
chr3.3 exon 43495217 43495450 43495217 ID=MS.gene027049.t1.exon3;Parent=MS.gene027049.t1
chr3.3 CDS 43495217 43495450 43495217 ID=cds.MS.gene027049.t1;Parent=MS.gene027049.t1
chr3.3 exon 43494777 43494837 43494777 ID=MS.gene027049.t1.exon4;Parent=MS.gene027049.t1
chr3.3 CDS 43494777 43494837 43494777 ID=cds.MS.gene027049.t1;Parent=MS.gene027049.t1
chr3.3 exon 43494591 43494731 43494591 ID=MS.gene027049.t1.exon5;Parent=MS.gene027049.t1
chr3.3 CDS 43494591 43494731 43494591 ID=cds.MS.gene027049.t1;Parent=MS.gene027049.t1
chr3.3 exon 43494171 43494391 43494171 ID=MS.gene027049.t1.exon6;Parent=MS.gene027049.t1
chr3.3 CDS 43494171 43494391 43494171 ID=cds.MS.gene027049.t1;Parent=MS.gene027049.t1
Gene Sequence

>MS.gene027049

ATGGATTCCATAGTTATGATGAGGAATTCATTTCTATTTATCTCTTGCTTTATCTTCTTCAGCTTAGGGTTCTTAGAAGCTCAAAAGACTCCAGCTATTTATGTGTTTGGAGACTCACTTGTTGATGTTGGCAACAACAATTACTTGAGTCTTTCCCTTGTAAAGGCAACTCTTCCTCACTATGGCATTGATTTTCCAACTAAGAAACCAACTGGGAGGTTTAGCAATGGCAAAAATGCTGCTGATTTGATTGGTAAGTTATTCAAAATGAACATCACACACACACAACTACATATTAATTGCTCATTATTTCCAATCTTCTTTTGCTATAATACAATTATTAGCTTCTCTGATTACCTATTTAAATATAGAAACTAAATTAAAGATTTTCAATAGAGTTGCTTTCTTAACAAGTAAGTTAATAATCATTTTTATGAATCATTAATAAAAGAAATACAAGCATTGCACTATTTTTTTTTATACTTTTTCTTAAAATAGATTAAACATTAATATTATAATAAGTAGTATTAACAAACTCTTTAATTTTAAATGTTATTTTGTCGAGGCTTTTGCAAAATAATTAATGCGTAGTTATTATAATGTTATTAGATTATATTAAATAATTTTTATTAAACGATAGTAACTAATTTATCTATTGATTCAAAGACCAACTATACTAGAACATGTGAATTTTGCACACGTACCTTAGAAGCCACCAACTTTGAGAATGGCACTTTTCTTTTTCAAACACAGCTTAGAATTTAAGTAATTTGGAATTGAGCTTAGAAACCACCAATTTGGAATTTAAGATGATTTGTTATGCTATGGTAAAAAAAAAAACCGAAACGCATTATATTTTTGGAATTAACTCAAAGAGCACATTGGATATAAAAGGGTGGGAAAGAAAAGATTGACACAATATTGTTTCAATTTTTTATTGGGGCATGCATATTGATAATTGATAGAAGTAATACAGAATTTGTTTTGCTAATTATATTTATTGTTGCAGCTGAAAAATTAGGCCTTGCCACGTCACCGCCTTACCTCTCCCTAGTATCTAAGATCAAATTCAACAAGAAGAATGTATCATTCTTGGATGGTGTTAACTTTGCATCTGGAGGTGCTGGAATATTTAATGGCACAGATGAAAATTTTGTAAGTTTTGTTCTAATTCTTTGTTTTCCTTCGCCATTTCTGTTTTTACATATTGTACAATAAATTTGTAGTCCAAAAAGGAATTTTGCACTCTAACTAAAGACGGACTAAAGTGATGATTCTGATTATATACAGTCAAGAAATTGACACTGTTAGATCAAAGATCAGATGACTTACGTCAATCGTTCCAATCTTGATCCATCAATGTCAATATCTTGACTATATGATTTTAAGTTTTAATTTTTTTTTTTTACTGGAGAAACTTTTTTCATCTCAACATGATTTGAAACTCACACATTACATTTCTTGCAGAGAAATTCAAAATGTTAAATAAAATGACTAAGTAATTGAAAAAATATTACATTTCTTGCAGAGACAATCAATACCTTTGACAAAGCAAGTGGACTATTATTCACAAGTGCATGAAAAATTAACACAACAAATAGAAGCATCTACACTTCAGAAACACCTCTCAAAATCCATATTTGCTGTTGTGATTGGAAGCAATGATATATTTGGTTACTATAACTCAAAGGATATTCAAAAGAAAAATACCCCACAACAATATGTGGATTCCATGGCTTCTTCACTAAAAGTGCAACTACAGGTAAACACAATGGTTTCAAATTGTAATTATGTTATTACACATTTCTACTCCTTCGTTTCTTTTCATAAGCTCTTTTGTCAATTTTCACTGGTAAGAAAAATTAGTAGGGTAATTAATGAGTATATTTTGTGTACGACTTTTATTAAATTTATATATAAATGTATTCAATATTTTTTTGAAGAATAAATGTATTCAATACTGACGAAGATAAATTAGTAGTATTAATAAAGAATAGATTTATTAAAAAAATTAATAAATGGAATTAGTAATTTGAAAGGATGCTTATATATACGGACAATAACTTAGACCATATTGCAAAAGAGTTAAAATTTATGTTATTTACATGCATTTTAATTTTGGTTTGGTACCTTTTTGGCAGAGATTATACAACAATGGTGCAAGGAAATTTGAGATTATTGGTGTTAGTACAATTGGATGTTGTCCTGCATTGAGGCTCAAGAACAAAACATAATGTTTTTCAGAAGCAAATTTAATGTCAATGAAATATAATGAAGTCCTTCAATCCATGTTGAAGGAATTGAAATTTGTAAACAAGGACTTAAGTTACTCATACTTTGATACTTATGCTGCCCTCCAAGACCTCATTCAAAATCCAAAATCTTATGGTATGATTCATTATCACATAATCCTATGTCTCTTTGCATTATATATACCAAAAAAAAAATAAAAAATTATATTAGATGGTCAAAACAACTTCTTATCTGATTTTTTTTTCTTCTTAGAATTATCATTTTGGTAAAATAATTCTTGGATTGTTGTGAGGAGGATGAAATTTGTAAATGACTTTTATATATATTTTTTCAGGATTTGCAGATGTGAAAGATGCTTGTTGTGGACTTGGTGAATTGAATTCTCAATTTCTGTGTACACCAATTTCAATCATTTGTACCAATAGACAAGACCATATCTTTTGGGATCAATTCCATCCTACTGAGGCAGCCACACGCAATTTTGTGGATAGACTTTATAATGGACCTTCAAAATACACATCTCCTATTAATATGGAACAACTACTAGCTCTTTGA
Protein sequence

>MS.gene027049.t1

MDSIVMMRNSFLFISCFIFFSLGFLEAQKTPAIYVFGDSLVDVGNNNYLSLSLVKATLPHYGIDFPTKKPTGRFSNGKNAADLIAEKLGLATSPPYLSLVSKIKFNKKNVSFLDGVNFASGGAGIFNGTDENFRQSIPLTKQVDYYSQVHEKLTQQIEASTLQKHLSKSIFAVVIGSNDIFGYYNSKDIQKKNTPQQYVDSMASSLKVQLQRLYNNGARKFEIIGVSTIGCSNLMSMKYNEVLQSMLKELKFVNKDLSYSYFDTYAALQDLIQNPKSYGFADVKDACCGLGELNSQFLCTPISIICTNRQDHIFWDQFHPTEAATRNFVDRLYNGPSKYTSPINMEQLLAL