AlfalfaGEDB | MS.gene58425

M. sativa cultivar XinJiangDaYe / MS.gene58425

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016787 GO:0016788
PFAM: PF00657.25

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58425.t1	XP_013457904.1	98.1	368	7	0	1	368	1	368	2.00E-207	731.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58425.t1	Q9CA68	68.1	370	111	3	1	368	1	365	7.4e-147	521.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58425.t1	A0A072V1G0	98.1	368	7	0	1	368	1	368	1.4e-207	731.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049611	MS.gene58425	0.814104	1.83E-51	-1.69E-46
MS.gene050082	MS.gene58425	0.893923	4.00E-75	-1.69E-46
MS.gene050338	MS.gene58425	0.826029	3.39E-54	-1.69E-46
MS.gene05104	MS.gene58425	0.80696	6.38E-50	-1.69E-46
MS.gene051138	MS.gene58425	0.827746	1.32E-54	-1.69E-46
MS.gene051364	MS.gene58425	0.801239	9.89E-49	-1.69E-46
MS.gene051422	MS.gene58425	0.82224	2.63E-53	-1.69E-46
MS.gene051651	MS.gene58425	0.827289	1.70E-54	-1.69E-46
MS.gene053420	MS.gene58425	0.833952	3.97E-56	-1.69E-46
MS.gene053568	MS.gene58425	0.803165	3.97E-49	-1.69E-46

Showing 1 to 10 of 30 entries

Previous1 2 3Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene024503	MS.gene58425	PPI
MS.gene58425	MS.gene025966	PPI
MS.gene58425	MS.gene027046	PPI
MS.gene58425	MS.gene037695	PPI
MS.gene58425	MS.gene043656	PPI
MS.gene58425	MS.gene071236	PPI
MS.gene58425	MS.gene22856	PPI
MS.gene58425	MS.gene22635	PPI
MS.gene58425	MS.gene017201	PPI
MS.gene58425	MS.gene071237	PPI

Showing 1 to 10 of 19 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58425.t1	MTR_4g108690	98.098	368	7	0	1	368	1	368	0.0	743
MS.gene58425.t1	MTR_3g435540	79.348	368	71	2	1	368	1	363	0.0	610
MS.gene58425.t1	MTR_5g078210	46.707	334	176	2	8	341	6	337	4.65e-109	323
MS.gene58425.t1	MTR_5g078210	47.500	280	146	1	8	287	6	284	7.00e-89	271
MS.gene58425.t1	MTR_2g033920	44.340	318	168	7	29	341	37	350	8.86e-83	256
MS.gene58425.t1	MTR_4g122200	45.141	319	166	6	28	341	36	350	4.88e-82	254
MS.gene58425.t1	MTR_2g033930	43.987	316	170	5	29	341	34	345	9.66e-82	254
MS.gene58425.t1	MTR_4g035353	40.705	312	179	5	29	337	33	341	3.31e-81	252
MS.gene58425.t1	MTR_8g079050	40.683	322	180	8	29	341	39	358	8.73e-78	244
MS.gene58425.t1	MTR_3g098270	38.608	316	187	5	29	339	36	349	1.11e-74	236

Showing 1 to 10 of 152 entries

Previous1 2 3 4 5…16Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58425.t1	AT1G74460	68.108	370	111	3	1	368	1	365	0.0	528
MS.gene58425.t1	AT5G37690	45.161	341	185	2	1	341	1	339	1.88e-107	319
MS.gene58425.t1	AT5G37690	43.402	341	183	3	1	341	1	331	9.71e-100	299
MS.gene58425.t1	AT3G50400	41.615	322	178	7	29	341	36	356	8.46e-80	249
MS.gene58425.t1	AT5G15720	42.056	321	176	6	29	343	32	348	8.44e-78	244
MS.gene58425.t1	AT5G08460	40.823	316	179	5	28	337	50	363	1.42e-77	244
MS.gene58425.t1	AT2G23540	39.875	321	184	6	29	341	50	369	2.79e-76	241
MS.gene58425.t1	AT1G71250	36.950	341	203	6	8	339	16	353	4.46e-74	234
MS.gene58425.t1	AT5G41890	36.207	348	193	10	27	357	31	366	9.45e-71	226
MS.gene58425.t1	AT4G28780	36.095	338	212	3	6	341	10	345	1.24e-70	225

Showing 1 to 10 of 148 entries

Previous1 2 3 4 5…15Next

Find 79 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAATTGAGTTGTTTCA+AGG	0.447844	8.3:-15852480	MS.gene58425:CDS
AAAGATGTGTCTAGGACTGG+AGG	0.598576	8.3:+15852698	None:intergenic
AAAGTTGACACTCACAAAAT+AGG	0.330676	8.3:+15852601	None:intergenic
AACAAATTGAGTTGTTTCAA+GGG	0.493665	8.3:-15852479	MS.gene58425:CDS
AACACTAAGAAGACAACTAA+AGG	0.515883	8.3:-15852283	MS.gene58425:intron
AACAGGGTGAGTCTGAGTTT+TGG	0.402399	8.3:+15851327	None:intergenic
AACTATGCTTCTGGTGGTGG+CGG	0.499017	8.3:-15852644	MS.gene58425:CDS
AAGATGTGTCTAGGACTGGA+GGG	0.599327	8.3:+15852699	None:intergenic
AAGCCCAATACCCAAAATGA+TGG	0.546627	8.3:+15853840	None:intergenic
AAGCGATCTAATAGATGACT+TGG	0.575982	8.3:-15851982	MS.gene58425:CDS

Showing 1 to 10 of 79 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTGACACTCACAAAAT+AGG	+	chr8.3:15852382-15852401	None:intergenic	30.0%
AAATAGTAAGTTGTGTGCTT+AGG	+	chr8.3:15851936-15851955	None:intergenic	30.0%
AACACTAAGAAGACAACTAA+AGG	-	chr8.3:15852697-15852716	MS.gene58425:CDS	30.0%
AAGGTTGTGCAATTCATATT+TGG	-	chr8.3:15851178-15851197	MS.gene58425:CDS	30.0%
ACATGCATGACATGTAATAT+AGG	-	chr8.3:15853148-15853167	MS.gene58425:intron	30.0%
ATACAATGATGAAACCTTCA+TGG	-	chr8.3:15852661-15852680	MS.gene58425:CDS	30.0%
ATATCTACTTACCGTACTTA+AGG	+	chr8.3:15853097-15853116	None:intergenic	30.0%
CCTAACTCAAACTATAGATT+TGG	-	chr8.3:15853032-15853051	MS.gene58425:intron	30.0%
CCTACAAAACAAATGTGATT+AGG	+	chr8.3:15853630-15853649	None:intergenic	30.0%
TATCTACTTACCGTACTTAA+GGG	+	chr8.3:15853096-15853115	None:intergenic	30.0%

Showing 1 to 10 of 151 entries

Previous1 2 3 4 5…16Next

Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	15851106	15853896	15851106	ID=MS.gene58425
chr8.3	mRNA	15851106	15853896	15851106	ID=MS.gene58425.t1;Parent=MS.gene58425
chr8.3	exon	15853659	15853896	15853659	ID=MS.gene58425.t1.exon1;Parent=MS.gene58425.t1
chr8.3	CDS	15853659	15853896	15853659	ID=cds.MS.gene58425.t1;Parent=MS.gene58425.t1
chr8.3	exon	15852616	15852746	15852616	ID=MS.gene58425.t1.exon2;Parent=MS.gene58425.t1
chr8.3	CDS	15852616	15852746	15852616	ID=cds.MS.gene58425.t1;Parent=MS.gene58425.t1
chr8.3	exon	15852284	15852523	15852284	ID=MS.gene58425.t1.exon3;Parent=MS.gene58425.t1
chr8.3	CDS	15852284	15852523	15852284	ID=cds.MS.gene58425.t1;Parent=MS.gene58425.t1
chr8.3	exon	15851898	15852147	15851898	ID=MS.gene58425.t1.exon4;Parent=MS.gene58425.t1
chr8.3	CDS	15851898	15852147	15851898	ID=cds.MS.gene58425.t1;Parent=MS.gene58425.t1
chr8.3	exon	15851106	15851353	15851106	ID=MS.gene58425.t1.exon5;Parent=MS.gene58425.t1
chr8.3	CDS	15851106	15851353	15851106	ID=cds.MS.gene58425.t1;Parent=MS.gene58425.t1

Gene Sequence

>MS.gene58425

ATGGAGTTTAGTAAGGTGATAGTTATTATAGTAGCCATCATTTTGGGTATTGGGCTTGAAGGATGCCATTGTAAGGTTGTGCAATTCATATTTGGAGACTCTCTTTCGGATGTTGGAAACAACATGCATCTCTCTAGAAGCCTAGCTCAGGCAAGCTTGCCTTGGTATGGTATAGACATGGGTAATGGGTTACCTAATGGAAGGTTCTCTAATGGACGCACAGTTGCTGATATAATAGGTAATTTTTTCACTTATTGGCATTCAAATACTAGAAACTAAATTGTCTAATCTAAATGCTCTTAGATTTCATTAAGCTCTTAGACCATGACAAAAATCTATTTTTATTTTTATTTAATTATGTTGAAACGATTTTAGTTAAAAATGAGTTTAAAGTAAAGTGCTCTATGTTTGGACTTTGTTTGGATATATTTACGTGATAGTACGTTGAATAAAAGTTTTGAGTGCAAAGATTACGTTTGAAAGAAAAAATTACAAATTCTAACTTTAAATTAAAATAAGTTGTTTAGCGGTAGCTAGTATTATTTTGTGTCCGAGACGCGGCAATTGAGAAGCTATAATTAAGCATTTGTTAATGAAGTGTTTGGTTGAGGATGAACAATGAGTTTGGAGCTCTCCCATCATGATTTTTAGAAGTTACAATGTGTTGTAGTTGTAGCTTTAATCTACATTAGATTATGAGAGGAGCTCAAAAGATCATCACATTGAGGCAATAGCAATCACACAAGTGAAGTTGGACTTCATTTGTGTGACTTCTAACTCAAATTTTTCACGACAGACATTTGGCGGTTGCGAAGAGCAAACGCTCTCCTAAGCACACAACTTACTATTTTCAAAAAACACAGTAAGTGTATAATGTATTTCAATGTGAGACTTTTAACTCATATTTTCCACAATAGACAATGTCCGGTCCCGGTAAGCGAATCTCTCCAAAACATAAGCTTACTATTTTTCAAACACACTTATTGTATCGATGTATTTCAAACATAAAACAACATATATATCTTGCTGCAGCAAAGAATTAGCCCTGACTTTTTAAGGTTATTGATGTCTTGTGAATCAACCTGTGAACAGGTTTGAAATTAGAGTTTGTCATTCATGACATTATAACATAGATCTTATGCATTTTCAGGTGACAGTTTAGGCCTACCTAGGCCCCCTCCAGTCCTAGACACATCTTTAACTGAGAAAGATATACTAATAAATGGATTGAACTATGCTTCTGGTGGTGGCGGTATCTTGAATGAAACTGGCACCTATTTTGTGAGTGTCAACTTTTCTACTGTGTCTTAAGGGCATTTTATTTATAGCAACACTGAAATATTTTGGATGATAAAATTATTTCTCTCATGCAGATCCAAAAATTATCACTAGACAAACAAATTGAGTTGTTTCAAGGGACACAAGAACTAATTAGAAGCAAAATTGGAAAAAGGGCTGCGGACAAATTCTTTAGAGAAGCTCAATATGTTGTTGCTTTAGGTAGCAATGACTTTATCAACAACTACTTGATGCCTCTTTACACTGATTCATGGACATACAATGATGAAACCTTCATGGATTACTTGATAGGAACACTAAGAAGACAACTAAAGGTTTATTGAGTTCACTCTAAAATAATCATGCTTCATTGTTTTGCATTTAAGTGTCTTAAGTCTTGTTTTTTTTTTTTTTTTTGAGGAAAGAGTCTTAAGTATAATAATGAGTATTTACATTTGTTTATGTTTTTAGCTACTTCATAGTTTAGGAGCAAGGCAATTGATGCTTTTTGGGCTGGGTCCAATGGGTTGCATTCCACTTCAAAGGGTACTTACTACAACCGGAAATTGTCGAGAAAGTGTAAACAAACTAGCTCTTAGCTTTAATAAAGCTTCAAGCGATCTAATAGATGACTTGGTGAAGCAACTTCCTAACTCAAACTATAGATTTGGAGATGCATATGATGTTGTCTCTGATTTGATTAGCAATCCCCTTAAGTACGGTAAGTAGATATGTTAATTGATAATTTACTTCACTCTCTAATCACATGCATGACATGTAATATAGGATCTAGATTCCATACATTAAAAAATGCAAGTATTTACACATATTAACTGATCTTGATTTTTTATTTGAGATCAGTTGATTCAAATTACATTTTCACCAAATTATCTTTAATGGATCTCGTTTATTGATTTGAGATCATACAACGAAAATTATATAACGTGTCACACTGCATGAAATCCAAATCCATGTTGTTGACACTTAACCAAATGATGCTCATACCAAGGGTTTGCGACAAAAACAAGAGTTTTAGGCGCAAATATTTTTGGACCCGAAATTTATATTTTAAATATGACCAATAGTTAAAAATGTGTCACTAATATTTATTTTATCGGTTTCATAGTATTCATTTTACTCACTACTTTTGTCATTAAGTAATTCAGCTACAAAATTATCTAGGCTTAAAAAAGTGTCAAAATTTTCTGTCTTAAAAACGTGTCACTTAAAAGTTGGTTTTAGACCTAATCACATTTGTTTTGTAGGGTTCCAAAACTCAGACTCACCCTGTTGTTCCTTTGGGAGAATTAGACCAGCACTTACATGTGTACCTGCATCAACACTGTGCTCAGACAGAAGCAAATATGTGTTTTGGGACGAGTACCATCCCTCAGACAGTGCTAATGAGCTCATTGCAAATGAACTTATTAAGAAATTTGGATTTTCACGTGACGGTCAAAATGCTGCTCCTTCACCAGCACCTGCTGCTATTGCTCCATCTCCAGAAGATTAA

Protein sequence

>MS.gene58425.t1

MEFSKVIVIIVAIILGIGLEGCHCKVVQFIFGDSLSDVGNNMHLSRSLAQASLPWYGIDMGNGLPNGRFSNGRTVADIIGDSLGLPRPPPVLDTSLTEKDILINGLNYASGGGGILNETGTYFIQKLSLDKQIELFQGTQELIRSKIGKRAADKFFREAQYVVALGSNDFINNYLMPLYTDSWTYNDETFMDYLIGTLRRQLKLLHSLGARQLMLFGLGPMGCIPLQRVLTTTGNCRESVNKLALSFNKASSDLIDDLVKQLPNSNYRFGDAYDVVSDLISNPLKYGFQNSDSPCCSFGRIRPALTCVPASTLCSDRSKYVFWDEYHPSDSANELIANELIKKFGFSRDGQNAAPSPAPAAIAPSPED