AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018925

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018925.t1 MTR_3g435540 99.125 343 3 0 1 343 22 364 0.0 699
MS.gene018925.t1 MTR_4g108690 82.822 326 56 0 1 326 26 351 0.0 570
MS.gene018925.t1 MTR_5g078210 47.937 315 162 2 1 315 24 336 2.04e-107 318
MS.gene018925.t1 MTR_5g078210 48.855 262 133 1 1 262 24 284 2.88e-87 266
MS.gene018925.t1 MTR_2g033920 44.969 318 166 7 4 316 37 350 3.56e-83 256
MS.gene018925.t1 MTR_4g122200 43.887 319 170 6 3 316 36 350 1.50e-81 253
MS.gene018925.t1 MTR_4g035353 39.241 316 186 5 4 316 33 345 5.56e-81 251
MS.gene018925.t1 MTR_2g033930 42.271 317 176 5 4 317 34 346 3.41e-79 246
MS.gene018925.t1 MTR_8g079050 39.752 322 183 8 4 316 39 358 1.09e-76 240
MS.gene018925.t1 MTR_5g084750 40.625 320 180 8 5 319 33 347 2.95e-74 233
MS.gene018925.t1 MTR_3g005650 40.129 309 180 4 4 312 32 335 6.76e-73 230
MS.gene018925.t1 MTR_7g116570 36.957 322 197 5 4 323 36 353 1.30e-70 224
MS.gene018925.t1 MTR_5g084770 38.750 320 187 7 5 319 31 346 1.77e-70 223
MS.gene018925.t1 MTR_3g098270 35.016 317 199 5 3 314 35 349 2.97e-69 221
MS.gene018925.t1 MTR_1g079540 36.624 314 195 4 4 315 33 344 1.85e-68 219
MS.gene018925.t1 MTR_7g116520 36.392 316 197 4 4 317 36 349 3.57e-68 218
MS.gene018925.t1 MTR_1g024890 36.825 315 195 4 4 316 34 346 4.30e-68 218
MS.gene018925.t1 MTR_3g024510 37.061 313 188 6 4 312 40 347 2.30e-67 216
MS.gene018925.t1 MTR_8g087890 38.730 315 180 8 4 312 33 340 5.68e-67 215
MS.gene018925.t1 MTR_7g116510 36.593 317 196 4 4 317 27 341 1.13e-66 214
MS.gene018925.t1 MTR_1g069175 37.342 316 192 6 4 315 35 348 3.54e-66 213
MS.gene018925.t1 MTR_0565s0010 37.261 314 187 8 4 312 34 342 2.98e-65 211
MS.gene018925.t1 MTR_3g464730 36.250 320 193 7 5 318 31 345 4.17e-65 209
MS.gene018925.t1 MTR_3g082830 36.909 317 192 7 5 317 41 353 4.62e-65 210
MS.gene018925.t1 MTR_7g116500 36.508 315 196 4 4 316 35 347 5.94e-65 210
MS.gene018925.t1 MTR_4g019880 36.278 317 196 5 4 316 34 348 8.24e-65 209
MS.gene018925.t1 MTR_1g079530 37.539 317 184 7 4 316 31 337 3.71e-63 205
MS.gene018925.t1 MTR_3g052480 34.365 323 193 7 4 315 35 349 4.39e-63 205
MS.gene018925.t1 MTR_3g052490 32.915 319 202 4 4 315 34 347 1.16e-61 201
MS.gene018925.t1 MTR_3g005660 40.694 317 175 10 4 312 38 349 1.34e-61 201
MS.gene018925.t1 MTR_6g021530 36.792 318 192 6 4 316 31 344 5.61e-61 199
MS.gene018925.t1 MTR_5g093090 31.761 318 209 3 4 316 30 344 2.16e-60 198
MS.gene018925.t1 MTR_2g033920 44.106 263 139 6 4 262 37 295 2.58e-60 196
MS.gene018925.t1 MTR_8g075230 34.483 319 201 7 4 318 38 352 1.13e-58 193
MS.gene018925.t1 MTR_3g052580 30.696 316 212 3 4 315 30 342 5.73e-58 192
MS.gene018925.t1 MTR_3g052580 30.696 316 212 3 4 315 29 341 9.88e-58 192
MS.gene018925.t1 MTR_5g084790 33.333 321 200 9 5 318 35 348 1.02e-57 191
MS.gene018925.t1 MTR_1g025760 33.229 319 207 5 4 319 82 397 1.42e-57 192
MS.gene018925.t1 MTR_5g009100 33.016 315 205 4 4 315 48 359 4.10e-57 190
MS.gene018925.t1 MTR_2g084585 35.220 318 196 8 4 316 32 344 1.56e-56 187
MS.gene018925.t1 MTR_1g025720 32.407 324 212 6 4 324 39 358 1.15e-55 185
MS.gene018925.t1 MTR_8g074570 33.127 323 198 8 4 316 40 354 1.04e-54 183
MS.gene018925.t1 MTR_8g074560 32.915 319 205 5 4 315 33 349 1.24e-54 183
MS.gene018925.t1 MTR_7g008060 33.968 315 191 6 4 316 35 334 1.46e-54 182
MS.gene018925.t1 MTR_1g025780 33.123 317 204 6 6 319 45 356 1.57e-54 182
MS.gene018925.t1 MTR_8g075220 32.500 320 207 6 6 318 44 361 1.94e-54 182
MS.gene018925.t1 MTR_5g022630 33.866 313 199 7 6 313 47 356 2.65e-54 182
MS.gene018925.t1 MTR_8g014910 35.625 320 189 10 6 316 36 347 1.04e-53 180
MS.gene018925.t1 MTR_2g044100 34.472 322 193 7 4 315 45 358 1.27e-53 181
MS.gene018925.t1 MTR_3g114090 32.602 319 209 5 4 319 38 353 1.50e-52 177
MS.gene018925.t1 MTR_3g114120 32.602 319 207 7 6 320 51 365 3.46e-52 177
MS.gene018925.t1 MTR_2g017875 37.342 316 177 11 4 312 36 337 5.15e-52 176
MS.gene018925.t1 MTR_5g074270 34.139 331 202 9 4 323 35 360 5.89e-52 176
MS.gene018925.t1 MTR_4g056160 36.420 324 187 10 4 316 29 344 3.49e-51 174
MS.gene018925.t1 MTR_3g023220 37.299 311 178 9 4 312 35 330 6.27e-51 173
MS.gene018925.t1 MTR_1g025680 32.087 321 208 6 4 319 36 351 1.51e-50 174
MS.gene018925.t1 MTR_1g025700 31.348 319 212 6 4 319 52 366 1.60e-50 172
MS.gene018925.t1 MTR_8g075200 31.230 317 210 7 6 318 45 357 1.99e-50 173
MS.gene018925.t1 MTR_2g017965 36.593 317 181 10 4 313 35 338 1.45e-49 170
MS.gene018925.t1 MTR_5g022640 31.861 317 207 8 5 316 46 358 4.47e-49 168
MS.gene018925.t1 MTR_8g022810 32.508 323 197 8 4 315 43 355 1.11e-48 167
MS.gene018925.t1 MTR_8g087870 35.647 317 177 11 4 312 31 328 2.46e-48 166
MS.gene018925.t1 MTR_8g031390 32.075 318 193 8 4 312 39 342 8.30e-48 166
MS.gene018925.t1 MTR_2g100620 34.700 317 196 9 6 316 35 346 9.42e-48 165
MS.gene018925.t1 MTR_2g015080 31.975 319 196 9 4 307 40 352 2.02e-47 164
MS.gene018925.t1 MTR_2g017925 37.143 315 175 10 4 312 35 332 2.35e-47 164
MS.gene018925.t1 MTR_2g017955 36.137 321 188 11 4 319 35 343 4.68e-47 164
MS.gene018925.t1 MTR_4g056280 33.962 318 200 8 4 316 32 344 5.92e-47 162
MS.gene018925.t1 MTR_3g021460 33.546 313 188 8 4 312 33 329 6.20e-47 162
MS.gene018925.t1 MTR_0009s0250 34.069 317 186 8 4 314 35 334 9.54e-47 162
MS.gene018925.t1 MTR_8g031420 31.447 318 196 7 4 312 37 341 5.54e-46 160
MS.gene018925.t1 MTR_4g087985 31.307 329 203 10 4 316 38 359 1.51e-45 159
MS.gene018925.t1 MTR_2g461580 32.372 312 193 7 4 312 33 329 5.50e-45 157
MS.gene018925.t1 MTR_8g031430 30.503 318 199 7 4 312 39 343 7.97e-45 157
MS.gene018925.t1 MTR_0127s0040 34.389 221 136 5 103 317 5 222 6.75e-43 149
MS.gene018925.t1 MTR_5g083040 31.310 313 200 7 4 306 34 341 2.33e-42 150
MS.gene018925.t1 MTR_8g022790 32.588 313 195 7 4 312 39 339 4.85e-42 150
MS.gene018925.t1 MTR_5g093090 32.584 267 166 4 4 262 30 290 1.76e-41 147
MS.gene018925.t1 MTR_8g031400 29.560 318 202 7 4 312 39 343 2.57e-41 148
MS.gene018925.t1 MTR_1g025910 30.275 327 202 8 7 321 41 353 4.06e-41 148
MS.gene018925.t1 MTR_2g017915 35.759 316 167 10 4 315 35 318 8.07e-41 146
MS.gene018925.t1 MTR_8g031390 31.802 283 175 7 4 282 39 307 1.84e-40 144
MS.gene018925.t1 MTR_8g074580 29.132 357 200 9 4 312 46 397 2.76e-40 146
MS.gene018925.t1 MTR_1g079590 40.449 178 103 3 4 180 33 208 7.35e-36 129
MS.gene018925.t1 MTR_8g022810 27.726 321 162 8 4 315 43 302 2.13e-33 126
MS.gene018925.t1 MTR_7g033150 26.479 355 197 10 4 316 37 369 1.49e-30 119
MS.gene018925.t1 MTR_1108s0010 33.180 217 122 5 107 316 3 203 2.07e-30 115
MS.gene018925.t1 MTR_8g089805 27.887 355 196 12 4 319 42 375 1.39e-29 117
MS.gene018925.t1 MTR_7g033155 27.654 358 200 11 4 316 40 383 1.02e-28 115
MS.gene018925.t1 MTR_1g030340 27.778 342 203 14 4 315 44 371 2.62e-28 114
MS.gene018925.t1 MTR_5g087690 25.705 319 211 8 4 312 52 354 4.67e-28 112
MS.gene018925.t1 MTR_7g111780 29.499 339 190 12 2 316 36 349 1.38e-27 111
MS.gene018925.t1 MTR_7g087190 27.168 346 205 12 4 316 45 376 1.69e-27 111
MS.gene018925.t1 MTR_6g007100 27.576 330 202 9 6 317 37 347 7.97e-27 109
MS.gene018925.t1 MTR_2g017925 32.558 215 128 6 103 312 27 229 1.64e-26 106
MS.gene018925.t1 MTR_2g018015 37.563 197 116 6 4 197 38 230 2.04e-26 107
MS.gene018925.t1 MTR_5g093090 34.239 184 108 3 4 179 30 208 3.02e-26 104
MS.gene018925.t1 MTR_2g015580 29.499 339 199 14 4 316 49 373 3.92e-26 107
MS.gene018925.t1 MTR_7g116870 27.647 340 205 12 4 316 35 360 1.59e-25 105
MS.gene018925.t1 MTR_1g030220 28.198 344 198 12 4 315 42 368 7.47e-25 104
MS.gene018925.t1 MTR_1g030275 27.815 302 182 10 42 316 74 366 1.27e-24 103
MS.gene018925.t1 MTR_3g463960 27.729 339 208 13 4 317 46 372 1.81e-24 103
MS.gene018925.t1 MTR_3g463950 27.729 339 208 13 4 317 46 372 1.81e-24 103
MS.gene018925.t1 MTR_3g463970 27.729 339 208 13 4 317 46 372 1.81e-24 103
MS.gene018925.t1 MTR_3g463940 27.729 339 208 13 4 317 46 372 1.81e-24 103
MS.gene018925.t1 MTR_7g113860 27.326 344 204 13 4 316 31 359 6.24e-24 101
MS.gene018925.t1 MTR_1g030230 28.053 303 180 9 42 315 67 360 6.83e-24 101
MS.gene018925.t1 MTR_2g015590 27.381 336 213 11 4 317 33 359 6.90e-24 101
MS.gene018925.t1 MTR_7g113860 27.326 344 204 13 4 316 37 365 7.37e-24 101
MS.gene018925.t1 MTR_4g104240 26.471 340 205 12 4 317 41 361 1.36e-23 100
MS.gene018925.t1 MTR_3g463930 27.907 344 208 14 4 317 46 379 2.76e-23 99.8
MS.gene018925.t1 MTR_1g030268 28.239 301 180 11 42 315 75 366 4.12e-23 99.4
MS.gene018925.t1 MTR_7g111780 29.344 259 150 7 77 316 6 250 5.65e-23 96.7
MS.gene018925.t1 MTR_7g033165 27.405 343 201 12 6 316 37 363 8.29e-23 98.2
MS.gene018925.t1 MTR_1g082390 27.746 346 203 14 4 318 33 362 1.17e-22 97.8
MS.gene018925.t1 MTR_8g028160 27.246 345 204 16 4 316 38 367 1.32e-22 97.8
MS.gene018925.t1 MTR_5g074210 31.579 171 105 3 165 323 46 216 1.71e-22 94.4
MS.gene018925.t1 MTR_2g079090 26.647 334 203 12 4 317 32 343 2.39e-22 96.7
MS.gene018925.t1 MTR_2g043980 28.060 335 195 13 4 317 36 345 3.19e-22 96.3
MS.gene018925.t1 MTR_1g060490 26.316 323 210 10 4 318 39 341 4.14e-22 95.9
MS.gene018925.t1 MTR_5g084880 42.857 98 54 1 167 262 15 112 1.40e-21 89.7
MS.gene018925.t1 MTR_2g015650 29.641 334 205 13 4 316 33 357 1.53e-21 94.7
MS.gene018925.t1 MTR_0029s0050 26.647 334 203 12 4 317 32 343 2.15e-21 94.0
MS.gene018925.t1 MTR_6g007095 25.597 293 186 7 42 317 405 682 2.66e-21 95.5
MS.gene018925.t1 MTR_6g007095 26.822 343 199 11 6 317 45 366 7.53e-21 94.0
MS.gene018925.t1 MTR_2g087292 25.915 328 155 9 4 324 35 281 2.95e-21 92.4
MS.gene018925.t1 MTR_0029s0100 26.647 334 203 12 4 317 32 343 2.97e-21 93.6
MS.gene018925.t1 MTR_6g007090 27.083 336 205 13 6 316 43 363 3.22e-21 93.6
MS.gene018925.t1 MTR_2g015630 27.893 337 205 14 7 317 36 360 3.64e-21 93.6
MS.gene018925.t1 MTR_3g438030 27.624 362 211 14 4 340 32 367 5.48e-21 93.2
MS.gene018925.t1 MTR_2g079080 26.807 332 205 12 4 317 32 343 6.36e-21 92.8
MS.gene018925.t1 MTR_3g069780 27.624 362 211 14 4 340 32 367 1.19e-20 92.0
MS.gene018925.t1 MTR_3g448360 27.859 341 203 13 4 317 31 355 1.81e-20 91.7
MS.gene018925.t1 MTR_7g104220 25.077 323 209 12 4 315 44 344 3.76e-20 90.5
MS.gene018925.t1 MTR_8g089805 25.503 298 177 9 56 319 21 307 4.95e-20 89.7
MS.gene018925.t1 MTR_1g092690 25.478 314 197 12 4 305 53 341 5.41e-20 90.1
MS.gene018925.t1 MTR_1g060500 26.140 329 211 10 4 318 42 352 2.28e-19 88.2
MS.gene018925.t1 MTR_8g038680 25.806 341 208 11 6 316 32 357 3.29e-18 85.1
MS.gene018925.t1 MTR_2g015670 28.529 333 196 14 4 316 33 343 3.50e-18 84.7
MS.gene018925.t1 MTR_1g092750 24.398 332 210 8 4 320 42 347 1.76e-17 82.8
MS.gene018925.t1 MTR_1g092740 25.625 320 194 13 1 304 37 328 1.88e-17 82.8
MS.gene018925.t1 MTR_4g036385 36.522 115 70 2 205 316 14 128 6.26e-17 77.0
MS.gene018925.t1 MTR_7g113860 25.685 292 175 11 56 316 11 291 9.76e-17 80.1
MS.gene018925.t1 MTR_1g030268 28.926 242 148 8 42 267 75 308 1.07e-16 80.1
MS.gene018925.t1 MTR_4g036375 34.228 149 94 4 4 151 32 177 2.75e-16 76.6
MS.gene018925.t1 MTR_6g049230 34.351 131 83 2 170 297 64 194 5.03e-16 75.9
MS.gene018925.t1 MTR_7g033165 28.214 280 162 11 6 262 37 300 6.27e-16 77.8
MS.gene018925.t1 MTR_1g092760 26.444 329 196 12 4 315 41 340 7.74e-16 77.8
MS.gene018925.t1 MTR_2g015590 26.449 276 177 8 4 262 33 299 8.47e-16 77.8
MS.gene018925.t1 MTR_1g079570 27.500 120 86 1 198 316 4 123 2.84e-15 72.4
MS.gene018925.t1 MTR_4g056220 36.190 105 66 1 213 316 77 181 4.59e-15 73.2
MS.gene018925.t1 MTR_1g030265 23.958 288 185 9 55 315 53 333 1.70e-14 73.9
MS.gene018925.t1 MTR_2g017895 27.848 237 144 6 80 313 32 244 1.99e-14 72.8
MS.gene018925.t1 MTR_8g062580 31.304 115 75 3 201 312 64 177 1.96e-13 69.7
MS.gene018925.t1 MTR_3g069520 24.348 345 207 13 4 317 32 353 7.51e-12 66.2
MS.gene018925.t1 MTR_8g012540 25.694 288 177 11 6 271 32 304 4.63e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018925.t1 AT1G74460 76.232 345 80 1 1 343 22 366 0.0 558
MS.gene018925.t1 AT5G37690 47.302 315 164 2 1 315 26 338 1.19e-107 319
MS.gene018925.t1 AT5G37690 45.397 315 162 3 1 315 26 330 8.63e-100 298
MS.gene018925.t1 AT3G50400 41.796 323 176 9 4 316 36 356 5.80e-79 246
MS.gene018925.t1 AT5G15720 41.615 322 176 7 4 318 32 348 6.72e-78 243
MS.gene018925.t1 AT2G23540 40.683 322 180 8 4 316 50 369 2.81e-77 242
MS.gene018925.t1 AT5G08460 40.506 316 180 5 3 312 50 363 7.16e-77 241
MS.gene018925.t1 AT1G71250 39.423 312 183 5 4 312 43 351 1.06e-76 240
MS.gene018925.t1 AT1G71691 40.064 312 181 5 4 314 57 363 1.02e-72 230
MS.gene018925.t1 AT5G41890 37.725 334 184 11 1 316 30 357 4.94e-70 223
MS.gene018925.t1 AT4G28780 37.460 315 193 3 4 316 33 345 3.57e-68 218
MS.gene018925.t1 AT1G33811 40.000 320 175 10 4 312 36 349 7.09e-68 218
MS.gene018925.t1 AT1G29660 40.127 314 177 8 4 312 34 341 2.67e-67 216
MS.gene018925.t1 AT5G45670 36.991 319 193 6 4 318 31 345 1.92e-65 211
MS.gene018925.t1 AT5G18430 35.962 317 197 5 4 316 30 344 3.73e-65 210
MS.gene018925.t1 AT5G33370 34.286 315 203 4 4 316 32 344 1.47e-64 209
MS.gene018925.t1 AT1G29670 38.339 313 183 8 4 312 34 340 4.37e-64 207
MS.gene018925.t1 AT4G18970 35.423 319 198 6 4 318 30 344 7.96e-64 207
MS.gene018925.t1 AT3G04290 35.873 315 198 4 4 316 31 343 1.70e-63 206
MS.gene018925.t1 AT1G29670 38.339 313 183 8 4 312 102 408 4.63e-63 207
MS.gene018925.t1 AT4G18970 35.423 319 198 6 4 318 30 344 8.31e-63 206
MS.gene018925.t1 AT2G04570 35.443 316 196 7 5 316 31 342 3.19e-61 199
MS.gene018925.t1 AT4G10950 33.441 311 203 3 4 312 73 381 6.66e-61 200
MS.gene018925.t1 AT5G15720 38.603 272 158 5 54 318 48 317 1.38e-60 197
MS.gene018925.t1 AT5G42170 34.675 323 200 7 6 324 54 369 2.20e-60 198
MS.gene018925.t1 AT4G26790 35.220 318 196 8 5 317 32 344 2.37e-59 195
MS.gene018925.t1 AT4G26790 35.220 318 196 8 5 317 32 344 2.37e-59 195
MS.gene018925.t1 AT1G71691 37.597 258 157 3 58 314 8 262 1.29e-58 191
MS.gene018925.t1 AT2G42990 34.169 319 202 7 5 319 31 345 2.28e-58 192
MS.gene018925.t1 AT4G10950 33.441 311 199 4 4 312 73 377 1.50e-57 191
MS.gene018925.t1 AT1G75890 33.542 319 205 6 5 319 50 365 2.22e-57 190
MS.gene018925.t1 AT1G75890 33.542 319 205 6 5 319 79 394 4.18e-57 190
MS.gene018925.t1 AT1G75890 32.931 331 204 8 5 319 50 378 1.43e-56 188
MS.gene018925.t1 AT5G15720 41.353 266 144 7 4 262 32 292 1.76e-56 186
MS.gene018925.t1 AT5G55050 34.783 322 197 7 4 316 41 358 1.13e-55 186
MS.gene018925.t1 AT3G14820 36.250 320 190 10 5 319 35 345 2.17e-55 184
MS.gene018925.t1 AT5G45950 33.968 315 198 7 4 316 42 348 4.55e-55 184
MS.gene018925.t1 AT1G20120 33.125 320 202 8 4 317 80 393 5.41e-55 185
MS.gene018925.t1 AT1G58430 34.062 320 203 6 4 318 37 353 1.20e-54 183
MS.gene018925.t1 AT2G30220 33.866 313 191 7 4 307 35 340 3.84e-54 181
MS.gene018925.t1 AT1G59406 33.022 321 200 9 5 319 33 344 4.82e-53 178
MS.gene018925.t1 AT1G59030 33.022 321 200 9 5 319 33 344 4.82e-53 178
MS.gene018925.t1 AT1G58725 33.022 321 200 9 5 319 33 344 4.82e-53 178
MS.gene018925.t1 AT1G71691 40.000 260 150 5 4 262 57 311 4.13e-52 175
MS.gene018925.t1 AT3G16370 34.700 317 196 9 6 316 34 345 4.67e-52 176
MS.gene018925.t1 AT1G75880 31.975 319 210 6 5 319 55 370 2.19e-51 175
MS.gene018925.t1 AT2G30310 31.629 313 206 6 4 311 36 345 8.11e-51 173
MS.gene018925.t1 AT2G31540 32.492 317 206 6 4 315 37 350 1.62e-50 172
MS.gene018925.t1 AT1G75900 31.761 318 208 7 6 319 47 359 6.04e-50 171
MS.gene018925.t1 AT2G24560 32.573 307 199 6 4 305 36 339 8.28e-50 170
MS.gene018925.t1 AT1G75880 31.975 319 209 7 5 319 55 369 1.16e-49 170
MS.gene018925.t1 AT5G45960 33.439 314 191 9 5 307 50 356 2.65e-49 169
MS.gene018925.t1 AT4G16230 43.439 221 116 6 3 218 31 247 5.94e-49 165
MS.gene018925.t1 AT5G22810 33.642 324 196 10 4 316 36 351 7.17e-49 168
MS.gene018925.t1 AT1G06990 31.056 322 211 7 4 319 39 355 2.45e-48 166
MS.gene018925.t1 AT2G19010 35.127 316 179 13 4 312 32 328 3.44e-48 166
MS.gene018925.t1 AT2G19010 35.127 316 179 13 4 312 62 358 1.18e-47 165
MS.gene018925.t1 AT2G19060 33.019 318 183 14 4 311 32 329 2.20e-47 164
MS.gene018925.t1 AT2G40250 31.385 325 209 6 4 319 38 357 5.27e-47 163
MS.gene018925.t1 AT1G71120 31.975 319 198 9 4 315 33 339 6.95e-47 162
MS.gene018925.t1 AT5G33370 33.716 261 169 4 4 262 32 290 7.54e-47 162
MS.gene018925.t1 AT1G58520 31.776 321 197 10 5 319 33 337 1.22e-46 161
MS.gene018925.t1 AT1G58525 31.776 321 197 10 5 319 33 337 1.22e-46 161
MS.gene018925.t1 AT5G03810 31.875 320 207 9 5 318 33 347 2.44e-46 161
MS.gene018925.t1 AT3G53100 33.542 319 202 8 5 318 32 345 3.67e-46 160
MS.gene018925.t1 AT2G19050 34.591 318 178 13 4 312 33 329 5.34e-46 160
MS.gene018925.t1 AT1G53920 31.068 309 193 8 4 302 50 348 9.08e-46 160
MS.gene018925.t1 AT2G03980 32.492 317 196 8 4 312 45 351 1.34e-45 159
MS.gene018925.t1 AT2G03980 32.492 317 196 8 4 312 45 351 1.34e-45 159
MS.gene018925.t1 AT2G03980 32.492 317 196 8 4 312 45 351 1.34e-45 159
MS.gene018925.t1 AT2G03980 32.492 317 196 8 4 312 45 351 1.34e-45 159
MS.gene018925.t1 AT3G43570 29.968 317 186 7 5 319 33 315 1.46e-45 158
MS.gene018925.t1 AT1G20132 30.864 324 208 9 4 319 63 378 3.59e-45 159
MS.gene018925.t1 AT1G73610 33.129 326 191 10 4 322 37 342 5.41e-44 154
MS.gene018925.t1 AT3G14225 31.173 324 204 7 4 316 39 354 5.70e-44 155
MS.gene018925.t1 AT3G14225 31.595 326 204 7 4 316 39 358 6.97e-44 155
MS.gene018925.t1 AT1G20130 31.307 329 207 10 4 319 186 508 7.01e-43 155
MS.gene018925.t1 AT1G20130 31.307 329 207 10 4 319 206 528 1.50e-42 155
MS.gene018925.t1 AT5G40990 31.385 325 202 9 4 316 39 354 1.68e-42 151
MS.gene018925.t1 AT1G20135 33.010 309 189 9 6 311 33 326 3.60e-42 149
MS.gene018925.t1 AT5G03820 31.776 321 203 9 5 316 36 349 3.85e-42 150
MS.gene018925.t1 AT5G03820 31.776 321 203 9 5 316 64 377 9.94e-42 150
MS.gene018925.t1 AT5G63170 33.007 306 185 10 6 307 32 321 6.20e-41 146
MS.gene018925.t1 AT4G30140 32.063 315 188 12 4 312 35 329 1.56e-40 145
MS.gene018925.t1 AT1G53940 29.321 324 210 7 4 316 41 356 4.44e-40 145
MS.gene018925.t1 AT1G23500 34.036 332 181 13 4 323 37 342 1.90e-39 142
MS.gene018925.t1 AT1G75920 29.503 322 199 9 6 317 33 336 2.03e-38 140
MS.gene018925.t1 AT2G24560 32.374 278 178 7 4 276 36 308 8.45e-38 137
MS.gene018925.t1 AT1G53990 31.173 324 197 9 4 316 37 345 1.10e-37 138
MS.gene018925.t1 AT2G19050 37.097 248 142 9 4 248 33 269 2.21e-37 135
MS.gene018925.t1 AT3G43550 32.319 263 164 8 5 262 33 286 2.28e-36 133
MS.gene018925.t1 AT1G75920 28.487 337 198 10 6 317 28 346 2.47e-35 132
MS.gene018925.t1 AT1G75930 31.385 325 191 12 4 316 31 335 2.59e-34 129
MS.gene018925.t1 AT1G75910 27.848 316 213 5 6 317 32 336 1.26e-33 127
MS.gene018925.t1 AT1G75920 28.283 297 186 8 31 317 29 308 3.96e-33 125
MS.gene018925.t1 AT1G54030 27.184 309 196 10 4 308 54 337 3.91e-32 124
MS.gene018925.t1 AT2G31550 29.524 210 143 3 110 315 1 209 6.83e-30 114
MS.gene018925.t1 AT1G75920 27.103 321 177 8 6 317 33 305 9.83e-30 116
MS.gene018925.t1 AT2G04020 30.573 314 156 10 4 308 45 305 9.46e-29 113
MS.gene018925.t1 AT1G53940 28.409 264 177 5 4 262 41 297 2.31e-28 112
MS.gene018925.t1 AT1G54020 26.282 312 208 8 4 312 35 327 1.34e-27 111
MS.gene018925.t1 AT3G14220 28.750 320 199 13 2 312 32 331 2.59e-27 110
MS.gene018925.t1 AT2G04020 35.176 199 119 4 4 200 45 235 3.95e-27 107
MS.gene018925.t1 AT3G05180 27.457 346 201 11 4 316 38 366 8.57e-27 109
MS.gene018925.t1 AT1G54000 25.857 321 211 10 4 316 38 339 2.94e-26 108
MS.gene018925.t1 AT3G14210 28.704 324 198 13 4 315 38 340 4.79e-26 107
MS.gene018925.t1 AT1G54010 26.087 322 209 12 4 316 38 339 7.61e-26 107
MS.gene018925.t1 AT3G62280 27.327 333 198 11 6 316 40 350 1.84e-25 105
MS.gene018925.t1 AT1G28580 29.377 337 199 13 6 316 41 364 3.08e-25 105
MS.gene018925.t1 AT5G14450 27.761 335 202 11 6 312 45 367 3.17e-25 105
MS.gene018925.t1 AT1G54790 27.874 348 193 17 6 316 36 362 8.10e-25 103
MS.gene018925.t1 AT1G54030 26.718 262 165 8 4 261 54 292 5.42e-24 100
MS.gene018925.t1 AT1G67830 26.686 341 202 11 4 311 32 357 9.20e-24 100
MS.gene018925.t1 AT2G27360 27.410 332 205 13 6 312 37 357 1.16e-23 100
MS.gene018925.t1 AT5G03610 24.762 315 207 8 4 307 45 340 1.35e-23 100
MS.gene018925.t1 AT1G31550 27.647 340 202 11 6 317 40 363 2.01e-23 100
MS.gene018925.t1 AT3G26430 26.801 347 202 11 4 315 33 362 2.17e-23 100
MS.gene018925.t1 AT4G16233 40.187 107 63 1 211 316 6 112 2.39e-23 94.4
MS.gene018925.t1 AT1G09390 26.479 355 211 14 2 334 37 363 9.19e-23 98.2
MS.gene018925.t1 AT3G48460 25.904 332 209 12 4 312 40 357 1.20e-22 97.8
MS.gene018925.t1 AT4G01130 25.507 345 210 13 4 316 36 365 1.29e-22 97.8
MS.gene018925.t1 AT5G45910 30.904 343 195 18 4 316 32 362 5.48e-22 95.9
MS.gene018925.t1 AT1G54790 27.019 359 186 16 4 316 33 361 5.57e-22 95.9
MS.gene018925.t1 AT1G28570 27.003 337 209 13 6 317 38 362 6.26e-22 95.9
MS.gene018925.t1 AT3G27950 26.331 338 208 11 4 316 34 355 1.52e-21 94.7
MS.gene018925.t1 AT1G56670 26.331 338 205 15 2 316 40 356 4.82e-21 93.2
MS.gene018925.t1 AT1G28610 26.786 336 210 12 6 317 35 358 6.70e-21 92.8
MS.gene018925.t1 AT1G28590 26.488 336 212 12 6 317 40 364 1.87e-20 92.0
MS.gene018925.t1 AT1G28600 25.664 339 208 11 6 316 35 357 2.13e-19 88.6
MS.gene018925.t1 AT1G28660 25.519 337 212 12 6 316 39 362 5.05e-19 87.4
MS.gene018925.t1 AT1G28650 24.850 334 218 11 6 316 41 364 8.51e-19 87.0
MS.gene018925.t1 AT3G09930 23.708 329 218 9 4 319 41 349 1.13e-18 86.3
MS.gene018925.t1 AT3G09930 23.708 329 218 9 4 319 41 349 1.13e-18 86.3
MS.gene018925.t1 AT1G31550 26.471 340 203 12 6 317 40 360 1.36e-18 86.3
MS.gene018925.t1 AT1G28660 25.223 337 212 13 6 316 39 361 3.19e-18 85.1
MS.gene018925.t1 AT1G28640 24.251 334 220 13 6 316 39 362 1.03e-17 84.0
MS.gene018925.t1 AT1G54020 24.031 258 176 7 58 312 1 241 1.25e-17 82.4
MS.gene018925.t1 AT1G54020 24.031 258 176 7 58 312 1 241 1.25e-17 82.4
MS.gene018925.t1 AT1G54020 24.031 258 176 7 58 312 1 241 1.25e-17 82.4
MS.gene018925.t1 AT1G28670 25.617 324 211 11 6 307 39 354 7.23e-17 81.3
MS.gene018925.t1 AT4G16220 37.324 142 84 4 3 143 31 168 5.67e-16 77.0
MS.gene018925.t1 AT4G01130 23.675 283 178 9 66 316 3 279 7.52e-16 77.4
MS.gene018925.t1 AT1G54020 27.451 153 108 2 163 312 40 192 1.24e-15 75.9
MS.gene018925.t1 AT4G01130 25.632 277 174 10 4 262 36 298 1.13e-14 74.3
MS.gene018925.t1 AT3G62280 27.007 274 161 10 6 262 40 291 3.21e-14 72.8
MS.gene018925.t1 AT3G14210 26.887 212 140 8 115 315 5 212 1.37e-13 70.5
MS.gene018925.t1 AT1G28580 26.502 283 172 11 58 316 13 283 3.05e-13 70.1
MS.gene018925.t1 AT2G36325 24.308 325 212 13 4 316 49 351 5.38e-11 63.5

Find 82 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTAGGCCTCCAGCATTTC+TGG 0.064442 3.1:-28337918 MS.gene018925:CDS
ATAGAAGCAAGTACGTATTT+TGG 0.172975 3.1:-28335497 MS.gene018925:CDS
TACATGTTTAGGTGACAATA+TGG 0.234845 3.1:-28337945 MS.gene018925:intron
AGTAAGGTAGTAAATGATTT+GGG 0.238873 3.1:-28336332 MS.gene018925:CDS
GTCTTTGGGCTGGGCCCAAT+GGG 0.246354 3.1:-28336443 MS.gene018925:CDS
GAACTAATTAGAAGCAAAAT+TGG 0.258541 3.1:-28337406 MS.gene018925:CDS
CCTTGGTATGGTATTGATAT+AGG 0.265630 3.1:-28338535 MS.gene018925:CDS
GACTCACCATGTTGCTCATT+TGG 0.279634 3.1:-28335570 MS.gene018925:CDS
GGTCTTTGGGCTGGGCCCAA+TGG 0.280375 3.1:-28336444 MS.gene018925:CDS
GCAAGGCAACTGATGGTCTT+TGG 0.290566 3.1:-28336458 MS.gene018925:CDS
TTTAAGTGAAGATGTTATAT+TGG 0.296957 3.1:-28337888 MS.gene018925:CDS
ACTGAACTCATCAAGAAGTT+TGG 0.302955 3.1:-28335432 MS.gene018925:CDS
GCACGTTATGTTGTTGCTTT+AGG 0.308496 3.1:-28337352 MS.gene018925:CDS
CAAAGAGTCCTTAGTACATC+TGG 0.308692 3.1:-28336407 MS.gene018925:CDS
GAAGATGTTATATTGGAAAA+TGG 0.314449 3.1:-28337881 MS.gene018925:CDS
TGCCTCTTTATAGTGATTCA+TGG 0.314992 3.1:-28337300 MS.gene018925:CDS
CTGAACTCATCAAGAAGTTT+GGG 0.326694 3.1:-28335431 MS.gene018925:CDS
AACATGGTGAGTCTGCATTT+TGG 0.327231 3.1:+28335580 None:intergenic
CAAGGCAACTGATGGTCTTT+GGG 0.329225 3.1:-28336457 MS.gene018925:CDS
ATTAGCAACCCCAGCAAGTA+TGG 0.336548 3.1:-28336248 MS.gene018925:intron
GCAACTGATGGTCTTTGGGC+TGG 0.343547 3.1:-28336453 MS.gene018925:CDS
AATGGAGTAAACTATGCTTC+TGG 0.349079 3.1:-28337863 MS.gene018925:CDS
CGTACAGTTGCTGATATTAT+AGG 0.351578 3.1:-28338478 MS.gene018925:intron
AAGTAAGGTAGTAAATGATT+TGG 0.374233 3.1:-28336333 MS.gene018925:CDS
CCAAATCTGTAGCTTGCATT+TGG 0.374809 3.1:+28336299 None:intergenic
CAACTGATGGTCTTTGGGCT+GGG 0.375703 3.1:-28336452 MS.gene018925:CDS
ACTCACCATGTTGCTCATTT+GGG 0.381809 3.1:-28335569 MS.gene018925:CDS
CCAAATGCAAGCTACAGATT+TGG 0.382063 3.1:-28336299 MS.gene018925:CDS
ACCTTCATTGATTACTTAGT+AGG 0.385384 3.1:-28337262 MS.gene018925:CDS
AAACAAATTGAGCTGTTTCA+AGG 0.396976 3.1:-28337436 MS.gene018925:CDS
ACATGTTTAGGTGACAATAT+GGG 0.408796 3.1:-28337944 MS.gene018925:intron
TATGGTATTGATATAGGAAA+TGG 0.415031 3.1:-28338529 MS.gene018925:CDS
GAAGGGGAATGCAGCCCATT+GGG 0.429532 3.1:+28336429 None:intergenic
ATAGGAAATGGACTTCCTAA+TGG 0.436248 3.1:-28338517 MS.gene018925:CDS
GTGACAATATGGGGCTTCCT+AGG 0.453449 3.1:-28337934 MS.gene018925:CDS
CCATTAGAGAATCTCCCATT+AGG 0.456257 3.1:+28338502 None:intergenic
TCCAGAAATGCTGGAGGCCT+AGG 0.461614 3.1:+28337917 None:intergenic
CCTAATGGGAGATTCTCTAA+TGG 0.464819 3.1:-28338502 MS.gene018925:CDS
CTTTAACAAAGCTTCAAGTA+AGG 0.467887 3.1:-28336348 MS.gene018925:CDS
ATGTACTAAGGACTCTTTGA+AGG 0.476349 3.1:+28336411 None:intergenic
TAGGAAATGGACTTCCTAAT+GGG 0.480982 3.1:-28338516 MS.gene018925:CDS
ATAACATCTTCACTTAAAGA+TGG 0.482637 3.1:+28337893 None:intergenic
AGTTCATTAGCTTTGTCTGA+TGG 0.485030 3.1:+28335462 None:intergenic
AACAAATTGAGCTGTTTCAA+GGG 0.487213 3.1:-28337435 MS.gene018925:CDS
TGAAGGGGAATGCAGCCCAT+TGG 0.497511 3.1:+28336428 None:intergenic
AACTATGCTTCTGGAGGTGG+TGG 0.499056 3.1:-28337854 MS.gene018925:CDS
GACAATTCCCAGATGTACTA+AGG 0.500454 3.1:+28336399 None:intergenic
GGTGATTCTTTATCTGATGT+TGG 0.502099 3.1:-28338601 MS.gene018925:CDS
CAAGCAAGTTTGCCTTGGTA+TGG 0.502737 3.1:-28338547 MS.gene018925:CDS
GGTGGCATATTGAATGAAAC+TGG 0.503719 3.1:-28337836 MS.gene018925:CDS
GAAGGAGATGGAGCAACCTC+TGG 0.504019 3.1:+28335369 None:intergenic
TTGCTCAAGCAAGTTTGCCT+TGG 0.504515 3.1:-28338552 MS.gene018925:CDS
GTAAACTATGCTTCTGGAGG+TGG 0.504846 3.1:-28337857 MS.gene018925:CDS
TCCTACTAAGTAATCAATGA+AGG 0.504930 3.1:+28337261 None:intergenic
GTCCATGAATCACTATAAAG+AGG 0.514127 3.1:+28337298 None:intergenic
AACACTTCAAGAACAACTAA+AGG 0.521281 3.1:-28337239 MS.gene018925:intron
AAAGATGGGTCCAGAAATGC+TGG 0.521979 3.1:+28337908 None:intergenic
CATGTTTAGGTGACAATATG+GGG 0.525761 3.1:-28337943 MS.gene018925:intron
CACCATGTTGCTCATTTGGG+AGG 0.534108 3.1:-28335566 MS.gene018925:CDS
CCATCAGTTGCCTTGCACCT+AGG 0.534483 3.1:+28336465 None:intergenic
TTGTATAATTAATCATCTGA+AGG 0.547376 3.1:+28335351 None:intergenic
TCTTTGCATAATGTTGATGC+TGG 0.549316 3.1:+28335519 None:intergenic
TAACATCTTCACTTAAAGAT+GGG 0.549902 3.1:+28337894 None:intergenic
AAAGAGTCCTTAGTACATCT+GGG 0.564543 3.1:-28336406 MS.gene018925:CDS
AATTAATCATCTGAAGGAGA+TGG 0.573103 3.1:+28335357 None:intergenic
CCTAGGTGCAAGGCAACTGA+TGG 0.574850 3.1:-28336465 MS.gene018925:CDS
TGTACTAAGGACTCTTTGAA+GGG 0.590352 3.1:+28336412 None:intergenic
TACTGCATAGCCTAGGTGCA+AGG 0.598919 3.1:-28336475 MS.gene018925:CDS
TTTACTTACCATACTTGCTG+GGG 0.611867 3.1:+28336240 None:intergenic
GTTTAGGTACTGCATAGCCT+AGG 0.623583 3.1:-28336482 MS.gene018925:intron
GCAACCTCTGGTGATGGTGA+AGG 0.624396 3.1:+28335381 None:intergenic
GTAAGGTAGTAAATGATTTG+GGG 0.641724 3.1:-28336331 MS.gene018925:CDS
AAACTTCTTGATGAGTTCAG+TGG 0.642304 3.1:+28335434 None:intergenic
GCTGGTATACATGTAAGAGC+TGG 0.647675 3.1:+28335537 None:intergenic
GGAGTAAACTATGCTTCTGG+AGG 0.648773 3.1:-28337860 MS.gene018925:CDS
GATGGAGCAACCTCTGGTGA+TGG 0.650771 3.1:+28335375 None:intergenic
AACTCCTTCACCATCACCAG+AGG 0.652672 3.1:-28335385 MS.gene018925:CDS
GTACTAAGGACTCTTTGAAG+GGG 0.664714 3.1:+28336413 None:intergenic
CCTATATCAATACCATACCA+AGG 0.668954 3.1:+28338535 None:intergenic
ATTTGGAGATGCTTATGATG+TGG 0.679980 3.1:-28336282 MS.gene018925:CDS
ATCCTCCCAAATGAGCAACA+TGG 0.688236 3.1:+28335564 None:intergenic
GATGGGTCCAGAAATGCTGG+AGG 0.718465 3.1:+28337911 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAAATTTTATTTTCATTT+TGG + chr3.1:28335945-28335964 None:intergenic 10.0%
!!! TATGACTTTTATTTTAAATT+TGG - chr3.1:28335688-28335707 MS.gene018925:intron 10.0%
!!! AAATTATTAATTTGTTGTGA+AGG - chr3.1:28336913-28336932 MS.gene018925:intron 15.0%
!!! CTTTTCTCTATAAAAAATAT+TGG - chr3.1:28336890-28336909 MS.gene018925:intron 15.0%
!!! GTAATAATATTTTCAATGTA+GGG - chr3.1:28338373-28338392 MS.gene018925:intron 15.0%
!!! TGTAATAATATTTTCAATGT+AGG - chr3.1:28338372-28338391 MS.gene018925:intron 15.0%
!! AATATATAAAACACATCATC+AGG - chr3.1:28335632-28335651 MS.gene018925:intron 20.0%
!! ACACAATGAAAAAAAATCTT+CGG + chr3.1:28335606-28335625 None:intergenic 20.0%
!! CGTTGAAAATTGAAAAATTA+TGG - chr3.1:28336301-28336320 MS.gene018925:CDS 20.0%
!! CTCATATTATTTACATGTTT+AGG - chr3.1:28336022-28336041 MS.gene018925:intron 20.0%
!! TATAGTACACAAGAAATTAT+TGG - chr3.1:28335574-28335593 MS.gene018925:CDS 20.0%
!! TCAATCTATGATGAAAATTA+TGG + chr3.1:28336345-28336364 None:intergenic 20.0%
!! TGAAAATCCTAACAAATAAA+GGG + chr3.1:28337289-28337308 None:intergenic 20.0%
!! TTGAAAATCCTAACAAATAA+AGG + chr3.1:28337290-28337309 None:intergenic 20.0%
!! TTTAAGTGAAGATGTTATAT+TGG - chr3.1:28336090-28336109 MS.gene018925:intron 20.0%
!!! ACTTAAATTTGTTTTTAGAG+TGG + chr3.1:28337994-28338013 None:intergenic 20.0%
!!! AGTTATTTTGTAAGATTACA+AGG - chr3.1:28336166-28336185 MS.gene018925:intron 20.0%
!!! AGTTTAAATCTCTTTAAAAC+TGG + chr3.1:28337160-28337179 None:intergenic 20.0%
!!! ATCATGCTTTTAAAATGTTT+AGG - chr3.1:28337480-28337499 MS.gene018925:intron 20.0%
!!! CAATTTGTATGCAATTTTTT+AGG - chr3.1:28338059-28338078 MS.gene018925:intron 20.0%
!!! TTCCATTCAACATTTTTTAT+AGG + chr3.1:28337386-28337405 None:intergenic 20.0%
!!! TTTATGCTATTTGACATTTA+TGG - chr3.1:28336428-28336447 MS.gene018925:CDS 20.0%
!!! TTTTGCACATAATTAATTTG+TGG - chr3.1:28335546-28335565 MS.gene018925:CDS 20.0%
! AAGTAAGGTAGTAAATGATT+TGG - chr3.1:28337645-28337664 MS.gene018925:intron 25.0%
! AGCCTATAAAAAATGTTGAA+TGG - chr3.1:28337381-28337400 MS.gene018925:CDS 25.0%
! AGTAAGGTAGTAAATGATTT+GGG - chr3.1:28337646-28337665 MS.gene018925:intron 25.0%
! ATAACATCTTCACTTAAAGA+TGG + chr3.1:28336088-28336107 None:intergenic 25.0%
! CATTTCTTTGTGTTTCATTT+GGG - chr3.1:28336793-28336812 MS.gene018925:intron 25.0%
! GAACTAATTAGAAGCAAAAT+TGG - chr3.1:28336572-28336591 MS.gene018925:intron 25.0%
! GAAGATGTTATATTGGAAAA+TGG - chr3.1:28336097-28336116 MS.gene018925:intron 25.0%
! GAATCCATAAACTCTTAAAA+TGG - chr3.1:28338201-28338220 MS.gene018925:intron 25.0%
! TAACATCTTCACTTAAAGAT+GGG + chr3.1:28336087-28336106 None:intergenic 25.0%
! TAATAATCAGTGACTTTCTT+TGG + chr3.1:28336465-28336484 None:intergenic 25.0%
! TACTGTTGAGAATTTAAATC+CGG - chr3.1:28337210-28337229 MS.gene018925:intron 25.0%
! TCAAATTCAGTCATGTAAAA+AGG - chr3.1:28337306-28337325 MS.gene018925:CDS 25.0%
! TCATTTCTTTGTGTTTCATT+TGG - chr3.1:28336792-28336811 MS.gene018925:intron 25.0%
! TCTGTTCGTATTCAAAATTA+TGG - chr3.1:28336244-28336263 MS.gene018925:intron 25.0%
! TTAATCACATTCAAAACATG+TGG + chr3.1:28336394-28336413 None:intergenic 25.0%
!! AAAAAACATACAAAGTGTTC+TGG + chr3.1:28337902-28337921 None:intergenic 25.0%
!! ATACTATTTAGAGTCATTTG+GGG - chr3.1:28335889-28335908 MS.gene018925:intron 25.0%
!! GATACTATTTAGAGTCATTT+GGG - chr3.1:28335888-28335907 MS.gene018925:intron 25.0%
!! TACAATGAAAATCGTTTTCA+CGG + chr3.1:28338356-28338375 None:intergenic 25.0%
!! TTGATTCAGAGTTTAAAATC+CGG + chr3.1:28337357-28337376 None:intergenic 25.0%
!!! AGGAAGAAATAGTCTTATTT+AGG - chr3.1:28337438-28337457 MS.gene018925:CDS 25.0%
!!! CAATGTAAAATTGCTACTTT+TGG - chr3.1:28337099-28337118 MS.gene018925:intron 25.0%
!!! GGAAGAAATAGTCTTATTTA+GGG - chr3.1:28337439-28337458 MS.gene018925:CDS 25.0%
!!! TAGTCTTATAGTTAGTTCAA+AGG - chr3.1:28335850-28335869 MS.gene018925:intron 25.0%
!!! TATGGTATTGATATAGGAAA+TGG - chr3.1:28335449-28335468 MS.gene018925:CDS 25.0%
!!! TATTTCGTTTTTGTTTTCAG+AGG - chr3.1:28337825-28337844 MS.gene018925:intron 25.0%
!!! TCATCCATTTTAAGAGTTTA+TGG + chr3.1:28338208-28338227 None:intergenic 25.0%
!!! TTATTAATTTGTTGTGAAGG+AGG - chr3.1:28336916-28336935 MS.gene018925:intron 25.0%
!!! TTTTTTCTCACAATATCAGA+AGG - chr3.1:28338098-28338117 MS.gene018925:intron 25.0%
AAAATCTTTGAATCTGCACA+AGG + chr3.1:28336514-28336533 None:intergenic 30.0%
AACACTTCAAGAACAACTAA+AGG - chr3.1:28336739-28336758 MS.gene018925:intron 30.0%
ACATGTTTAGGTGACAATAT+GGG - chr3.1:28336034-28336053 MS.gene018925:intron 30.0%
CGAACAGATATAACATATGT+AGG + chr3.1:28336232-28336251 None:intergenic 30.0%
CTTTAACAAAGCTTCAAGTA+AGG - chr3.1:28337630-28337649 MS.gene018925:intron 30.0%
GAAATTCACATTAACTGAAC+CGG + chr3.1:28337232-28337251 None:intergenic 30.0%
GTAAGGTAGTAAATGATTTG+GGG - chr3.1:28337647-28337666 MS.gene018925:intron 30.0%
TACATGTTTAGGTGACAATA+TGG - chr3.1:28336033-28336052 MS.gene018925:intron 30.0%
TCCTACTAAGTAATCAATGA+AGG + chr3.1:28336720-28336739 None:intergenic 30.0%
TGGTATTTAACCAATGAGTT+TGG - chr3.1:28335708-28335727 MS.gene018925:intron 30.0%
TGTTGAAGTTCCTAATTATG+TGG - chr3.1:28335912-28335931 MS.gene018925:intron 30.0%
! AAACAAATTGAGCTGTTTCA+AGG - chr3.1:28336542-28336561 MS.gene018925:intron 30.0%
! AACAAATTGAGCTGTTTCAA+GGG - chr3.1:28336543-28336562 MS.gene018925:intron 30.0%
! ACAATGAAAATCGTTTTCAC+GGG + chr3.1:28338355-28338374 None:intergenic 30.0%
! ACCTTCATTGATTACTTAGT+AGG - chr3.1:28336716-28336735 MS.gene018925:intron 30.0%
! ATAGAAGCAAGTACGTATTT+TGG - chr3.1:28338481-28338500 MS.gene018925:CDS 30.0%
! ATTTTACTTACCATACTTGC+TGG + chr3.1:28337743-28337762 None:intergenic 30.0%
! GGATACTATTTAGAGTCATT+TGG - chr3.1:28335887-28335906 MS.gene018925:intron 30.0%
! GTAACATTTTCATAACATCG+AGG + chr3.1:28338327-28338346 None:intergenic 30.0%
! TAGAAGCAAGTACGTATTTT+GGG - chr3.1:28338482-28338501 MS.gene018925:CDS 30.0%
! TCAAAAGCCCTTTATTTGTT+AGG - chr3.1:28337279-28337298 MS.gene018925:CDS 30.0%
! TTTTACTTACCATACTTGCT+GGG + chr3.1:28337742-28337761 None:intergenic 30.0%
!! TTTTGACTCTGAGAAATATG+CGG + chr3.1:28337265-28337284 None:intergenic 30.0%
!!! TTGCAGATTTTTTACATGTC+CGG - chr3.1:28337335-28337354 MS.gene018925:CDS 30.0%
AAACTTCTTGATGAGTTCAG+TGG + chr3.1:28338547-28338566 None:intergenic 35.0%
AAAGAGTCCTTAGTACATCT+GGG - chr3.1:28337572-28337591 MS.gene018925:intron 35.0%
AATGGAGTAAACTATGCTTC+TGG - chr3.1:28336115-28336134 MS.gene018925:intron 35.0%
ACTGAACTCATCAAGAAGTT+TGG - chr3.1:28338546-28338565 MS.gene018925:CDS 35.0%
ATGTACTAAGGACTCTTTGA+AGG + chr3.1:28337570-28337589 None:intergenic 35.0%
ATTTGGAGATGCTTATGATG+TGG - chr3.1:28337696-28337715 MS.gene018925:intron 35.0%
CATAACACATTCTCATCAAG+GGG - chr3.1:28335786-28335805 MS.gene018925:intron 35.0%
CATGTTTAGGTGACAATATG+GGG - chr3.1:28336035-28336054 MS.gene018925:intron 35.0%
CCTATATCAATACCATACCA+AGG + chr3.1:28335446-28335465 None:intergenic 35.0%
CGTACAGTTGCTGATATTAT+AGG - chr3.1:28335500-28335519 MS.gene018925:CDS 35.0%
CTGAACTCATCAAGAAGTTT+GGG - chr3.1:28338547-28338566 MS.gene018925:CDS 35.0%
CTTGATGAGAATGTGTTATG+CGG + chr3.1:28335786-28335805 None:intergenic 35.0%
GCATAACACATTCTCATCAA+GGG - chr3.1:28335785-28335804 MS.gene018925:intron 35.0%
GGTGATTCTTTATCTGATGT+TGG - chr3.1:28335377-28335396 MS.gene018925:CDS 35.0%
GTCCATGAATCACTATAAAG+AGG + chr3.1:28336683-28336702 None:intergenic 35.0%
TCTTTGCATAATGTTGATGC+TGG + chr3.1:28338462-28338481 None:intergenic 35.0%
TGCCTCTTTATAGTGATTCA+TGG - chr3.1:28336678-28336697 MS.gene018925:intron 35.0%
TGGTCGAAAACCACATAATT+AGG + chr3.1:28335925-28335944 None:intergenic 35.0%
TGTACTAAGGACTCTTTGAA+GGG + chr3.1:28337569-28337588 None:intergenic 35.0%
TTGATTCTTCTGCAAAAGCT+CGG + chr3.1:28335753-28335772 None:intergenic 35.0%
! ATAGGAAATGGACTTCCTAA+TGG - chr3.1:28335461-28335480 MS.gene018925:CDS 35.0%
! TAGGAAATGGACTTCCTAAT+GGG - chr3.1:28335462-28335481 MS.gene018925:CDS 35.0%
! TTTACTTACCATACTTGCTG+GGG + chr3.1:28337741-28337760 None:intergenic 35.0%
! TTTGACTCTGAGAAATATGC+GGG + chr3.1:28337264-28337283 None:intergenic 35.0%
!! AGTTCATTAGCTTTGTCTGA+TGG + chr3.1:28338519-28338538 None:intergenic 35.0%
!! CCTTGGTATGGTATTGATAT+AGG - chr3.1:28335443-28335462 MS.gene018925:CDS 35.0%
!!! TGAAGCAGAGAAGTTTTTTC+TGG - chr3.1:28336601-28336620 MS.gene018925:intron 35.0%
ACTCACCATGTTGCTCATTT+GGG - chr3.1:28338409-28338428 MS.gene018925:intron 40.0%
CAAAGAGTCCTTAGTACATC+TGG - chr3.1:28337571-28337590 MS.gene018925:intron 40.0%
CCAAATGCAAGCTACAGATT+TGG - chr3.1:28337679-28337698 MS.gene018925:intron 40.0%
CCATTAGAGAATCTCCCATT+AGG + chr3.1:28335479-28335498 None:intergenic 40.0%
CCTAATGGGAGATTCTCTAA+TGG - chr3.1:28335476-28335495 MS.gene018925:CDS 40.0%
CGCATAACACATTCTCATCA+AGG - chr3.1:28335784-28335803 MS.gene018925:intron 40.0%
GACAATTCCCAGATGTACTA+AGG + chr3.1:28337582-28337601 None:intergenic 40.0%
GGTGGCATATTGAATGAAAC+TGG - chr3.1:28336142-28336161 MS.gene018925:intron 40.0%
! AAAATCGTTTTCACGGGACA+AGG + chr3.1:28338349-28338368 None:intergenic 40.0%
! AACATGGTGAGTCTGCATTT+TGG + chr3.1:28338401-28338420 None:intergenic 40.0%
! CCAAATCTGTAGCTTGCATT+TGG + chr3.1:28337682-28337701 None:intergenic 40.0%
! GTACTAAGGACTCTTTGAAG+GGG + chr3.1:28337568-28337587 None:intergenic 40.0%
! TCAAAGGATCGAAGCTTTTG+AGG - chr3.1:28335866-28335885 MS.gene018925:intron 40.0%
! TTGACTCTGAGAAATATGCG+GGG + chr3.1:28337263-28337282 None:intergenic 40.0%
!! GCACGTTATGTTGTTGCTTT+AGG - chr3.1:28336626-28336645 MS.gene018925:intron 40.0%
AAAGATGGGTCCAGAAATGC+TGG + chr3.1:28336073-28336092 None:intergenic 45.0%
ACCAACTGAGCCAAACTCAT+TGG + chr3.1:28335721-28335740 None:intergenic 45.0%
ATCCTCCCAAATGAGCAACA+TGG + chr3.1:28338417-28338436 None:intergenic 45.0%
ATTAGCAACCCCAGCAAGTA+TGG - chr3.1:28337730-28337749 MS.gene018925:intron 45.0%
CAAGCAAGTTTGCCTTGGTA+TGG - chr3.1:28335431-28335450 MS.gene018925:CDS 45.0%
CAAGGCAACTGATGGTCTTT+GGG - chr3.1:28337521-28337540 MS.gene018925:intron 45.0%
GACTCACCATGTTGCTCATT+TGG - chr3.1:28338408-28338427 MS.gene018925:intron 45.0%
GCTGGTATACATGTAAGAGC+TGG + chr3.1:28338444-28338463 None:intergenic 45.0%
GGAGTAAACTATGCTTCTGG+AGG - chr3.1:28336118-28336137 MS.gene018925:intron 45.0%
TTGCTCAAGCAAGTTTGCCT+TGG - chr3.1:28335426-28335445 MS.gene018925:CDS 45.0%
! ACCAATGAGTTTGGCTCAGT+TGG - chr3.1:28335717-28335736 MS.gene018925:intron 45.0%
! GTAAACTATGCTTCTGGAGG+TGG - chr3.1:28336121-28336140 MS.gene018925:intron 45.0%
! GTTTAGGTACTGCATAGCCT+AGG - chr3.1:28337496-28337515 MS.gene018925:intron 45.0%
!! CTTAAAAAAAAAAAAAAAAA+AGG + chr3.1:28337420-28337439 None:intergenic 5.0%
!!! CTTTTTTTTTTTTTTTTTTA+AGG - chr3.1:28337418-28337437 MS.gene018925:CDS 5.0%
AACTCCTTCACCATCACCAG+AGG - chr3.1:28338593-28338612 MS.gene018925:CDS 50.0%
CAACTGATGGTCTTTGGGCT+GGG - chr3.1:28337526-28337545 MS.gene018925:intron 50.0%
CACCATGTTGCTCATTTGGG+AGG - chr3.1:28338412-28338431 MS.gene018925:intron 50.0%
GCAAGGCAACTGATGGTCTT+TGG - chr3.1:28337520-28337539 MS.gene018925:intron 50.0%
GTGACAATATGGGGCTTCCT+AGG - chr3.1:28336044-28336063 MS.gene018925:intron 50.0%
TACTGCATAGCCTAGGTGCA+AGG - chr3.1:28337503-28337522 MS.gene018925:intron 50.0%
! AACTATGCTTCTGGAGGTGG+TGG - chr3.1:28336124-28336143 MS.gene018925:intron 50.0%
! ACTCTGAGAAATATGCGGGG+TGG + chr3.1:28337260-28337279 None:intergenic 50.0%
ACATCGAGGTCTAGCGCATG+TGG + chr3.1:28338313-28338332 None:intergenic 55.0%
CCATCAGTTGCCTTGCACCT+AGG + chr3.1:28337516-28337535 None:intergenic 55.0%
CCTAGGTGCAAGGCAACTGA+TGG - chr3.1:28337513-28337532 MS.gene018925:intron 55.0%
GAAGGAGATGGAGCAACCTC+TGG + chr3.1:28338612-28338631 None:intergenic 55.0%
GAAGGGGAATGCAGCCCATT+GGG + chr3.1:28337552-28337571 None:intergenic 55.0%
GATGGAGCAACCTCTGGTGA+TGG + chr3.1:28338606-28338625 None:intergenic 55.0%
GATGGGTCCAGAAATGCTGG+AGG + chr3.1:28336070-28336089 None:intergenic 55.0%
GCAACTGATGGTCTTTGGGC+TGG - chr3.1:28337525-28337544 MS.gene018925:intron 55.0%
TCCAGAAATGCTGGAGGCCT+AGG + chr3.1:28336064-28336083 None:intergenic 55.0%
TCCTAGGCCTCCAGCATTTC+TGG - chr3.1:28336060-28336079 MS.gene018925:intron 55.0%
TGAAGGGGAATGCAGCCCAT+TGG + chr3.1:28337553-28337572 None:intergenic 55.0%
!! GCAACCTCTGGTGATGGTGA+AGG + chr3.1:28338600-28338619 None:intergenic 55.0%
CGAGGTCTAGCGCATGTGGT+TGG + chr3.1:28338309-28338328 None:intergenic 60.0%
! GTCTTTGGGCTGGGCCCAAT+GGG - chr3.1:28337535-28337554 MS.gene018925:intron 60.0%
! GGTCTTTGGGCTGGGCCCAA+TGG - chr3.1:28337534-28337553 MS.gene018925:intron 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 28335359 28338641 28335359 ID=MS.gene018925
chr3.1 mRNA 28335359 28338641 28335359 ID=MS.gene018925.t1;Parent=MS.gene018925
chr3.1 exon 28338479 28338641 28338479 ID=MS.gene018925.t1.exon1;Parent=MS.gene018925.t1
chr3.1 CDS 28338479 28338641 28338479 ID=cds.MS.gene018925.t1;Parent=MS.gene018925.t1
chr3.1 exon 28337826 28337956 28337826 ID=MS.gene018925.t1.exon2;Parent=MS.gene018925.t1
chr3.1 CDS 28337826 28337956 28337826 ID=cds.MS.gene018925.t1;Parent=MS.gene018925.t1
chr3.1 exon 28337240 28337479 28337240 ID=MS.gene018925.t1.exon3;Parent=MS.gene018925.t1
chr3.1 CDS 28337240 28337479 28337240 ID=cds.MS.gene018925.t1;Parent=MS.gene018925.t1
chr3.1 exon 28336249 28336498 28336249 ID=MS.gene018925.t1.exon4;Parent=MS.gene018925.t1
chr3.1 CDS 28336249 28336498 28336249 ID=cds.MS.gene018925.t1;Parent=MS.gene018925.t1
chr3.1 exon 28335359 28335606 28335359 ID=MS.gene018925.t1.exon5;Parent=MS.gene018925.t1
chr3.1 CDS 28335359 28335606 28335359 ID=cds.MS.gene018925.t1;Parent=MS.gene018925.t1
Gene Sequence

>MS.gene018925

ATGGTTCAGTTCATTTTTGGTGATTCTTTATCTGATGTTGGAAACAATAAATACTTATCTAAAAGTCTTGCTCAAGCAAGTTTGCCTTGGTATGGTATTGATATAGGAAATGGACTTCCTAATGGGAGATTCTCTAATGGTCGTACAGTTGCTGATATTATAGGTACATTTTTTTACTTATTAACATTTTTGCACATAATTAATTTGTGGCTAGTTATAGTACACAAGAAATTATTGGTCGTTGCCGAAGATTTTTTTTCATTGTGTTTAGCAAATATATAAAACACATCATCAGGAATTAGAGTTTATTCTATTATTTAGAAATAAAATATGACTTTTATTTTAAATTTGGTATTTAACCAATGAGTTTGGCTCAGTTGGTTAAGTAGCACCGAGCTTTTGCAGAAGAATCAAAATTAGATGTCCGCATAACACATTCTCATCAAGGGGAAATGAGTTTTAACGTGCGAACTAAGCACTTAAGCAGAGATTAGTCTTATAGTTAGTTCAAAGGATCGAAGCTTTTGAGGATACTATTTAGAGTCATTTGGGGTGTTGAAGTTCCTAATTATGTGGTTTTCGACCAAAATGAAAATAAAATTTGATGCTTATAAAGTTTTTTTCTACAATCAAGTACAGCTAATATACTGTAATGTTATCATGCTCATATTATTTACATGTTTAGGTGACAATATGGGGCTTCCTAGGCCTCCAGCATTTCTGGACCCATCTTTAAGTGAAGATGTTATATTGGAAAATGGAGTAAACTATGCTTCTGGAGGTGGTGGCATATTGAATGAAACTGGCAGTTATTTTGTAAGATTACAAGGATTAATTTTACAAAAAATGTTTTATAGACACTAGATTTTTCCTACATATGTTATATCTGTTCGTATTCAAAATTATGGTTAATTCAATTGATTAGATAATTAGTTTAAATTACGTTGAAAATTGAAAAATTATGGTTAATGTAGTTGAATTAACCATAATTTTCATCATAGATTGAATTAATCATGTACTCAGCTGAATTAACCACATGTTTTGAATGTGATTAATCATTACTCTTAATTTTATGCTATTTGACATTTATGGCTATTAAGTTACCAAAGAAAGTCACTGATTATTATTTATTTATTTGAATGAAAAATCATTCCTTGTGCAGATTCAAAGATTTTCTCTCTACAAACAAATTGAGCTGTTTCAAGGGACACAAGAACTAATTAGAAGCAAAATTGGAAAAGTTGAAGCAGAGAAGTTTTTTCTGGAAGCACGTTATGTTGTTGCTTTAGGTAGCAATGACTTCATCAACAATTATTTGATGCCTCTTTATAGTGATTCATGGACATACAACGATGAAACCTTCATTGATTACTTAGTAGGAACACTTCAAGAACAACTAAAGGTTAATATTTATTTAATCTAATCAAGCACAATCATTTCTTTGTGTTTCATTTGGGTTTTTGATCTTGCAGTAAGAAAAAATATACAATCGAATCTTGACTGTTTAATAAAGATCAAATTATATCTCATACTTTTCTCTATAAAAAATATTGGAAATTATTAATTTGTTGTGAAGGAGGTGAAGAGAGAAATTACTATTAATTAAAGTCACACTAACTACTATTTTATCATTGTTTAAAGACAACTCAATAAGATATATTCATTAGAAAAATATTATATTTAACTTCTTAAAAGTTAAAATATTATTTCTATCTTGCTAAAAAAAAACATTATTTTTATCAATGTAAAATTGCTACTTTTGGATTTTTCAACATATGTTCTTTAAATTAGCAAGACTCCAGTTTTAAAGAGATTTAAACTATGTTGCTCAATATTATAAAATAAAAGTTTTACTGTTGAGAATTTAAATCCGGTTCAGTTAATGTGAATTTCTTTTTCCACCCCGCATATTTCTCAGAGTCAAAAGCCCTTTATTTGTTAGGATTTTCAAATTCAGTCATGTAAAAAGGAAGCTTTTGCAGATTTTTTACATGTCCGGATTTTAAACTCTGAATCAATAAGAGCCTATAAAAAATGTTGAATGGAAAAAGAAATAGTCCTTTTTTTTTTTTTTTTTTAAGGAAGAAATAGTCTTATTTAGGGTGATTAAAATCTTTTTTAATCATGCTTTTAAAATGTTTAGGTACTGCATAGCCTAGGTGCAAGGCAACTGATGGTCTTTGGGCTGGGCCCAATGGGCTGCATTCCCCTTCAAAGAGTCCTTAGTACATCTGGGAATTGTCAAGAAAAAACAAACAAGTTAGCTCTTAGCTTTAACAAAGCTTCAAGTAAGGTAGTAAATGATTTGGGGAAGCAACTTCCAAATGCAAGCTACAGATTTGGAGATGCTTATGATGTGGTTAATGATGTAATTAGCAACCCCAGCAAGTATGGTAAGTAAAATATTACTTTCTTAACTATATTTCTTTTATCTCTTAATTATTTTTAATAAAGAAAATGTTAATTTATTTCGTTTTTGTTTTCAGAGGTTTATATAAAAAACAGAGTCAAATGAAAATAATTTCAAATATTTAGAATTTCCAGAACACTTTGTATGTTTTTTTATGAACAAGTTGTAAAATTGTTGTTGTTCTAGTGAGTTCGAAGTTAAATAATTTATGCTTGAATGTTTCCACTCTAAAAACAAATTTAAGTTAAAAAAAAAAAAGTAAAGTAAAATTTAGAAGAATTATTTTTTTACAATTTGTATGCAATTTTTTAGGATAAAATAAATTTCAATTTTTTCTCACAATATCAGAAGGAAAAAAAAACTAAAGATACGTTTTTTTAGTAAAATCACATCTGTTAACAAAAAAAATTAAACTATGATAATCTCTATTGTGAATCCATAAACTCTTAAAATGGATGAAAAAGAAAATATTAGCTTTTTTTTCTATCAGTAGAAATCTAATTCGACACTATCGAATTTACACATAGACACTGTGTACCAACCACATGCGCTAGACCTCGATGTTATGAAAATGTTACCTTGTCCCGTGAAAACGATTTTCATTGTAATAATATTTTCAATGTAGGGTTCCAAAATGCAGACTCACCATGTTGCTCATTTGGGAGGATTAGACCAGCTCTTACATGTATACCAGCATCAACATTATGCAAAGATAGAAGCAAGTACGTATTTTGGGATGAGTATCATCCATCAGACAAAGCTAATGAACTAATTGCCACTGAACTCATCAAGAAGTTTGGGTTTAAACGTGTTGATCAAGCAGAAACTCCTTCACCATCACCAGAGGTTGCTCCATCTCCTTCAGATGATTAA
Protein sequence

>MS.gene018925.t1

MVQFIFGDSLSDVGNNKYLSKSLAQASLPWYGIDIGNGLPNGRFSNGRTVADIIGDNMGLPRPPAFLDPSLSEDVILENGVNYASGGGGILNETGSYFIQRFSLYKQIELFQGTQELIRSKIGKVEAEKFFLEARYVVALGSNDFINNYLMPLYSDSWTYNDETFIDYLVGTLQEQLKVLHSLGARQLMVFGLGPMGCIPLQRVLSTSGNCQEKTNKLALSFNKASSKVVNDLGKQLPNASYRFGDAYDVVNDVISNPSKYGFQNADSPCCSFGRIRPALTCIPASTLCKDRSKYVFWDEYHPSDKANELIATELIKKFGFKRVDQAETPSPSPEVAPSPSDD