AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene02894

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02894.t1 MTR_2g027130 97.089 584 14 1 1 581 1 584 0.0 1099
MS.gene02894.t1 MTR_4g134110 59.019 571 209 7 11 578 2 550 0.0 553
MS.gene02894.t1 MTR_3g060660 43.186 565 309 7 8 565 11 570 1.41e-106 334
MS.gene02894.t1 MTR_3g060660 42.775 519 290 4 51 565 44 559 2.09e-93 300
MS.gene02894.t1 MTR_3g007920 39.506 567 330 7 9 565 12 575 2.23e-89 290
MS.gene02894.t1 MTR_5g096080 38.624 567 335 7 9 565 12 575 2.72e-89 289
MS.gene02894.t1 MTR_4g133450 53.292 319 137 4 262 578 6 314 6.29e-79 252
MS.gene02894.t1 MTR_3g101660 28.548 613 356 16 1 562 270 851 2.85e-29 124
MS.gene02894.t1 MTR_1g019490 26.833 600 365 18 14 563 259 834 1.28e-23 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02894.t1 AT1G12150 45.357 560 275 8 11 563 8 543 4.55e-127 384
MS.gene02894.t1 AT1G12150 45.357 560 275 8 11 563 8 543 4.55e-127 384
MS.gene02894.t1 AT5G55860 41.901 568 315 6 6 565 8 568 3.58e-86 281
MS.gene02894.t1 AT4G17210 34.220 564 312 7 10 563 12 526 2.62e-68 230
MS.gene02894.t1 AT2G26570 26.514 611 380 15 8 575 153 737 2.65e-27 117
MS.gene02894.t1 AT2G26570 26.514 611 380 15 8 575 153 737 2.65e-27 117
MS.gene02894.t1 AT4G33390 28.088 591 375 16 8 561 138 715 8.40e-24 106
MS.gene02894.t1 AT1G45545 24.370 595 348 17 8 562 143 675 1.69e-13 73.9
MS.gene02894.t1 AT1G45545 24.370 595 348 17 8 562 142 674 1.82e-13 73.9
MS.gene02894.t1 AT5G42880 25.251 598 362 18 6 565 115 665 2.32e-13 73.6

Find 78 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCTCTTGATGCTTTCA+TGG 0.211121 2.4:+61810696 None:intergenic
CAATTCTTGAAGTGTTATAT+TGG 0.291401 2.4:+61811050 None:intergenic
TCGAGACTTTGTGTTTCTTC+AGG 0.293848 2.4:+61810538 None:intergenic
TGAAACAAGTGCTGAAATTC+AGG 0.294476 2.4:-61810503 MS.gene02894:CDS
CAATCTGTCAAGGCTGCTAT+TGG 0.319700 2.4:-61811843 MS.gene02894:CDS
TGCCGCTTTGGAGGCGAAAT+TGG 0.336907 2.4:-61810803 MS.gene02894:CDS
TTCTGTCGAGTTAATAACTT+TGG 0.337764 2.4:-61810437 MS.gene02894:CDS
TTGGAGAACTATCTCTGTTT+CGG 0.342248 2.4:+61811919 None:intergenic
TTGGTGAAGTTCGTGTCAAC+CGG 0.365739 2.4:-61811815 MS.gene02894:CDS
AATAAAAGCAGCAACAGATT+TGG 0.368777 2.4:-61809750 MS.gene02894:CDS
AAGGCTGCTATTGGTTTGTT+TGG 0.369565 2.4:-61811834 MS.gene02894:CDS
CAAAGAAAAGGAAGATTCTA+TGG 0.384617 2.4:-61810233 MS.gene02894:CDS
ACCGGAGAATCTGTCTCCTT+TGG 0.398317 2.4:+61811900 None:intergenic
TATTTCTTCAGACAAAGCTT+TGG 0.407479 2.4:+61810069 None:intergenic
TGAGAGTCATTGTCAAGAAA+TGG 0.411564 2.4:-61810194 MS.gene02894:CDS
GAAAGAACAAGAGGAACTTA+AGG 0.412694 2.4:-61810314 MS.gene02894:CDS
TTCTAGCTCTGCAGCGAGAT+TGG 0.424207 2.4:+61809614 None:intergenic
TGGCGTCAAGAAGAACAAAA+AGG 0.451952 2.4:-61809665 MS.gene02894:CDS
AGAAATAGATAATAAATTGA+TGG 0.464169 2.4:-61810581 MS.gene02894:CDS
TGATAGAATTATTTCTATCC+CGG 0.469818 2.4:+61811796 None:intergenic
TACCTTGTAGTTCGCCGGTT+AGG 0.471965 2.4:+61810257 None:intergenic
AGAGATGAGAATGAAAGCTC+AGG 0.473161 2.4:-61810116 MS.gene02894:CDS
GTGTGATATGCAGAATGTAT+TGG 0.475004 2.4:-61811181 MS.gene02894:intron
AAAGGAGACTCAGCTTCTCT+TGG 0.484746 2.4:-61811157 MS.gene02894:CDS
TATGCAGAATGTATTGGAAA+AGG 0.485982 2.4:-61811175 MS.gene02894:intron
GGCAGGAGAAGCTCAGCGTT+CGG 0.487792 2.4:-61810767 MS.gene02894:CDS
GCTCTTGCTGCAAACCTAAC+CGG 0.490559 2.4:-61810271 MS.gene02894:CDS
AAGCGATAGGGTATGAAGCT+TGG 0.500293 2.4:-61810924 MS.gene02894:CDS
AGAACTAGAACATGCAAGAA+AGG 0.501099 2.4:-61810896 MS.gene02894:CDS
AGATTCTCCGGTGGGAGAGA+GGG 0.502913 2.4:-61811889 MS.gene02894:CDS
AGCGCTTATCGAGCTTGATA+AGG 0.503328 2.4:-61811073 MS.gene02894:CDS
TTGGCTGCATTTCAGATGGC+AGG 0.508839 2.4:-61810784 MS.gene02894:CDS
TCAGCAAAACTAGCAGTTGA+AGG 0.511221 2.4:-61809701 MS.gene02894:CDS
ACTACAAGGTAGCAAAGAAA+AGG 0.511736 2.4:-61810245 MS.gene02894:CDS
AGAGTTTCGTAATTCTGAGA+TGG 0.518540 2.4:-61810461 MS.gene02894:CDS
TCCAAAGGAGACAGATTCTC+CGG 0.522645 2.4:-61811901 MS.gene02894:CDS
TTTGCTACCTTGTAGTTCGC+CGG 0.522771 2.4:+61810252 None:intergenic
AGAAACAACTGCAATGGCTC+AGG 0.523434 2.4:-61809843 MS.gene02894:CDS
GATGAATTTGCTGCTCTAAG+TGG 0.529272 2.4:-61809902 MS.gene02894:CDS
CAGATTCTCCGGTGGGAGAG+AGG 0.533950 2.4:-61811890 MS.gene02894:CDS
AAAGATCAATGAACTTTCAA+AGG 0.534366 2.4:-61810728 MS.gene02894:CDS
GGCTCTGAGGAATGCAGAGA+TGG 0.535386 2.4:-61809729 MS.gene02894:CDS
TCAAGCCAAAGAACTCGAAA+AGG 0.536618 2.4:-61810959 MS.gene02894:CDS
AGAAGAACAGATTAAAGCGA+TGG 0.537448 2.4:-61810647 MS.gene02894:CDS
GCTTTGTCTGAAGAAATAGA+AGG 0.539516 2.4:-61810064 MS.gene02894:CDS
GCAGCCTTGACAGATTGAAA+TGG 0.548681 2.4:+61811849 None:intergenic
AACAACTGCAATGGCTCAGG+TGG 0.549356 2.4:-61809840 MS.gene02894:CDS
ACAAGTGAAGAAAGAACAAG+AGG 0.551605 2.4:-61810323 MS.gene02894:CDS
GCACTATCACAGAAAGCGAT+AGG 0.554433 2.4:-61810937 MS.gene02894:CDS
GAAATTGGCTGCATTTCAGA+TGG 0.565691 2.4:-61810788 MS.gene02894:CDS
TCAATCTCCCTCTCTCCCAC+CGG 0.566121 2.4:+61811882 None:intergenic
AGAATCAAAGCAATCTGCAA+TGG 0.566703 2.4:-61811004 MS.gene02894:CDS
GAAGAACAGATTAAAGCGAT+GGG 0.567926 2.4:-61810646 MS.gene02894:CDS
AGCTTCACTGAGAAACCTTG+TGG 0.568186 2.4:-61810368 MS.gene02894:CDS
CTTACCACTGGAATCAGAAA+CGG 0.572360 2.4:+61809940 None:intergenic
CACTATCACAGAAAGCGATA+GGG 0.572436 2.4:-61810936 MS.gene02894:CDS
AACCTAACCGGCGAACTACA+AGG 0.573065 2.4:-61810259 MS.gene02894:CDS
TGGTGAAGTTCGTGTCAACC+GGG 0.573487 2.4:-61811814 MS.gene02894:CDS
ACAAGAGGAACTTAAGGAGA+AGG 0.576875 2.4:-61810308 MS.gene02894:CDS
CTGTCTTAAGCGAATCCACA+AGG 0.577030 2.4:+61810353 None:intergenic
TGTCAACACGATCTTACCAC+TGG 0.594761 2.4:+61809928 None:intergenic
AATGTGAAGATTTGATTGAG+AGG 0.600637 2.4:-61809868 MS.gene02894:CDS
ATCTGCAATGGAAGAAAGTG+AGG 0.605339 2.4:-61810992 MS.gene02894:CDS
CAGCAACAGATTTGGCTCTG+AGG 0.613910 2.4:-61809742 MS.gene02894:CDS
AGCACCATTTCAATCTGTCA+AGG 0.619152 2.4:-61811853 MS.gene02894:CDS
CAAGCAGTTATCATTCGAGA+CGG 0.628969 2.4:-61810161 MS.gene02894:CDS
GCGTTCGGCGAAATTGAACT+CGG 0.630622 2.4:-61810752 MS.gene02894:CDS
AAGGAGACAGATTCTCCGGT+GGG 0.630732 2.4:-61811897 MS.gene02894:CDS
TATCAAGAGAAGATCTTCAG+AGG 0.632667 2.4:-61811778 MS.gene02894:intron
AAACAGAGATAGTTCTCCAA+AGG 0.633433 2.4:-61811916 MS.gene02894:CDS
GAGGACAGAAACAACTGCAA+TGG 0.637220 2.4:-61809849 MS.gene02894:CDS
GTCTCCGTTTCTGATTCCAG+TGG 0.639257 2.4:-61809944 MS.gene02894:CDS
TTGAAGGTGAATTAAAGAAG+TGG 0.644395 2.4:-61809685 MS.gene02894:CDS
TAAGGAGAAGGAACAAGCAG+CGG 0.645739 2.4:-61810296 MS.gene02894:CDS
AGCCAATTTCGCCTCCAAAG+CGG 0.663081 2.4:+61810801 None:intergenic
AAAGGAGACAGATTCTCCGG+TGG 0.663875 2.4:-61811898 MS.gene02894:CDS
TGAAGAAACACAAAGTCTCG+AGG 0.675914 2.4:-61810536 MS.gene02894:CDS
AAGTTGTTGTCTGACGCACA+AGG 0.705883 2.4:-61809971 MS.gene02894:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATAGATAATAAATTGA+TGG - chr2.4:61810962-61810981 MS.gene02894:CDS 15.0%
!! AACGATTATTTGCAATATTA+AGG + chr2.4:61809810-61809829 None:intergenic 20.0%
!! ATTTGTAATATTAAGGATTG+CGG + chr2.4:61809877-61809896 None:intergenic 20.0%
!! CATGGTTATTTGTAATATTA+AGG + chr2.4:61809884-61809903 None:intergenic 20.0%
!! CTGGTACAAAAAAAAAAAAA+AGG + chr2.4:61809840-61809859 None:intergenic 20.0%
!! CTTAATATTACAAATAACCA+TGG - chr2.4:61809882-61809901 MS.gene02894:CDS 20.0%
!! TTAATATTGCAAATAATCGT+TGG - chr2.4:61809809-61809828 MS.gene02894:CDS 20.0%
!!! AAACTTTTACAAAACTTCAA+AGG - chr2.4:61810938-61810957 MS.gene02894:CDS 20.0%
!!! CTTTTTTTTTTTTTTGTACC+AGG - chr2.4:61809838-61809857 MS.gene02894:CDS 20.0%
! AAAGATCAATGAACTTTCAA+AGG - chr2.4:61810815-61810834 MS.gene02894:CDS 25.0%
! ATTTGCAATATTAAGGATAG+CGG + chr2.4:61809803-61809822 None:intergenic 25.0%
! TTATTCGCAAAATTTAACCA+TGG + chr2.4:61809902-61809921 None:intergenic 25.0%
!! AATAGCAGTTTGTTCAAATT+CGG - chr2.4:61810122-61810141 MS.gene02894:CDS 25.0%
!! CAATTCTTGAAGTGTTATAT+TGG + chr2.4:61810496-61810515 None:intergenic 25.0%
!! TATTTTGTTAAGTTCTTGCT+TGG + chr2.4:61810706-61810725 None:intergenic 25.0%
!!! TGATAGAATTATTTCTATCC+CGG + chr2.4:61809750-61809769 None:intergenic 25.0%
AATAAAAGCAGCAACAGATT+TGG - chr2.4:61811793-61811812 MS.gene02894:CDS 30.0%
AATGTGAAGATTTGATTGAG+AGG - chr2.4:61811675-61811694 MS.gene02894:intron 30.0%
ACAAAAAGGTTTGGATTTGT+CGG - chr2.4:61811892-61811911 MS.gene02894:CDS 30.0%
CAAAGAAAAGGAAGATTCTA+TGG - chr2.4:61811310-61811329 MS.gene02894:intron 30.0%
TACAATATAGCACTATAGCA+TGG + chr2.4:61810148-61810167 None:intergenic 30.0%
TATGCAGAATGTATTGGAAA+AGG - chr2.4:61810368-61810387 MS.gene02894:CDS 30.0%
TATTTATGAGTTATGCGTCA+AGG - chr2.4:61810328-61810347 MS.gene02894:CDS 30.0%
TATTTCTTCAGACAAAGCTT+TGG + chr2.4:61811477-61811496 None:intergenic 30.0%
TCAAGAAGAACAAAAAGGTT+TGG - chr2.4:61811883-61811902 MS.gene02894:CDS 30.0%
TGTGCCTCTTGTATTAAAAT+TGG + chr2.4:61810230-61810249 None:intergenic 30.0%
TTCTGTCGAGTTAATAACTT+TGG - chr2.4:61811106-61811125 MS.gene02894:CDS 30.0%
TTGAAGGTGAATTAAAGAAG+TGG - chr2.4:61811858-61811877 MS.gene02894:CDS 30.0%
!! AACGCCAATTTTAATACAAG+AGG - chr2.4:61810223-61810242 MS.gene02894:CDS 30.0%
!!! ATCTAGTTCTTTTACAGTTG+TGG + chr2.4:61810679-61810698 None:intergenic 30.0%
!!! TTTTCAAGTTTGCGTGATTT+TGG - chr2.4:61810265-61810284 MS.gene02894:CDS 30.0%
AAACAGAGATAGTTCTCCAA+AGG - chr2.4:61809627-61809646 MS.gene02894:CDS 35.0%
ACAAGTGAAGAAAGAACAAG+AGG - chr2.4:61811220-61811239 MS.gene02894:intron 35.0%
ACTACAAGGTAGCAAAGAAA+AGG - chr2.4:61811298-61811317 MS.gene02894:intron 35.0%
AGAACTAGAACATGCAAGAA+AGG - chr2.4:61810647-61810666 MS.gene02894:CDS 35.0%
AGAAGAACAGATTAAAGCGA+TGG - chr2.4:61810896-61810915 MS.gene02894:CDS 35.0%
AGAATCAAAGCAATCTGCAA+TGG - chr2.4:61810539-61810558 MS.gene02894:CDS 35.0%
AGATGAAAAAAGAGCTGTTG+AGG - chr2.4:61811544-61811563 MS.gene02894:intron 35.0%
GAAAGAACAAGAGGAACTTA+AGG - chr2.4:61811229-61811248 MS.gene02894:intron 35.0%
GAAGAACAGATTAAAGCGAT+GGG - chr2.4:61810897-61810916 MS.gene02894:CDS 35.0%
GCTTTGTCTGAAGAAATAGA+AGG - chr2.4:61811479-61811498 MS.gene02894:intron 35.0%
GTGTGATATGCAGAATGTAT+TGG - chr2.4:61810362-61810381 MS.gene02894:CDS 35.0%
TATCAAGAGAAGATCTTCAG+AGG - chr2.4:61809765-61809784 MS.gene02894:CDS 35.0%
TATTGCACAACAATAGCGAT+TGG - chr2.4:61810166-61810185 MS.gene02894:CDS 35.0%
TGAGAGTCATTGTCAAGAAA+TGG - chr2.4:61811349-61811368 MS.gene02894:intron 35.0%
TTCTTCTCTTGATGCTTTCA+TGG + chr2.4:61810850-61810869 None:intergenic 35.0%
TTGGAGAACTATCTCTGTTT+CGG + chr2.4:61809627-61809646 None:intergenic 35.0%
! AGAGTTTCGTAATTCTGAGA+TGG - chr2.4:61811082-61811101 MS.gene02894:CDS 35.0%
! TTTTGACGTCTATGCGATTA+AGG + chr2.4:61809941-61809960 None:intergenic 35.0%
!! TGAAACAAGTGCTGAAATTC+AGG - chr2.4:61811040-61811059 MS.gene02894:CDS 35.0%
AAGCATTCAATCTTCGAAGC+AGG + chr2.4:61810020-61810039 None:intergenic 40.0%
ACAAGAGGAACTTAAGGAGA+AGG - chr2.4:61811235-61811254 MS.gene02894:intron 40.0%
AGAGATGAGAATGAAAGCTC+AGG - chr2.4:61811427-61811446 MS.gene02894:intron 40.0%
AGCACCATTTCAATCTGTCA+AGG - chr2.4:61809690-61809709 MS.gene02894:CDS 40.0%
AGCATTCAATCTTCGAAGCA+GGG + chr2.4:61810019-61810038 None:intergenic 40.0%
ATCTGCAATGGAAGAAAGTG+AGG - chr2.4:61810551-61810570 MS.gene02894:CDS 40.0%
CAAGCAGTTATCATTCGAGA+CGG - chr2.4:61811382-61811401 MS.gene02894:intron 40.0%
CACTATCACAGAAAGCGATA+GGG - chr2.4:61810607-61810626 MS.gene02894:CDS 40.0%
CTTACCACTGGAATCAGAAA+CGG + chr2.4:61811606-61811625 None:intergenic 40.0%
GAAATTGGCTGCATTTCAGA+TGG - chr2.4:61810755-61810774 MS.gene02894:CDS 40.0%
GAAGCAGGGTTATGACAAAA+TGG + chr2.4:61810005-61810024 None:intergenic 40.0%
TCAAGCCAAAGAACTCGAAA+AGG - chr2.4:61810584-61810603 MS.gene02894:CDS 40.0%
TCAGCAAAACTAGCAGTTGA+AGG - chr2.4:61811842-61811861 MS.gene02894:CDS 40.0%
TCGAGACTTTGTGTTTCTTC+AGG + chr2.4:61811008-61811027 None:intergenic 40.0%
TGAAGAAACACAAAGTCTCG+AGG - chr2.4:61811007-61811026 MS.gene02894:CDS 40.0%
TGACTAACTAGCTACCATCT+GGG + chr2.4:61810059-61810078 None:intergenic 40.0%
TGCTTCGAAGATTGAATGCT+TGG - chr2.4:61810019-61810038 MS.gene02894:CDS 40.0%
TGGCGTCAAGAAGAACAAAA+AGG - chr2.4:61811878-61811897 MS.gene02894:CDS 40.0%
!! AAGGCTGCTATTGGTTTGTT+TGG - chr2.4:61809709-61809728 MS.gene02894:CDS 40.0%
!! ACAAGATTTTGATGCCGCTT+TGG - chr2.4:61810728-61810747 MS.gene02894:CDS 40.0%
!! GATGAATTTGCTGCTCTAAG+TGG - chr2.4:61811641-61811660 MS.gene02894:intron 40.0%
!!! TAGTGCCTTTTCGAGTTCTT+TGG + chr2.4:61810592-61810611 None:intergenic 40.0%
AAAGGAGACTCAGCTTCTCT+TGG - chr2.4:61810386-61810405 MS.gene02894:CDS 45.0%
AAGCGATAGGGTATGAAGCT+TGG - chr2.4:61810619-61810638 MS.gene02894:CDS 45.0%
AAGTTGTTGTCTGACGCACA+AGG - chr2.4:61811572-61811591 MS.gene02894:intron 45.0%
AGAAACAACTGCAATGGCTC+AGG - chr2.4:61811700-61811719 MS.gene02894:intron 45.0%
AGCGCTTATCGAGCTTGATA+AGG - chr2.4:61810470-61810489 MS.gene02894:CDS 45.0%
AGCTTCACTGAGAAACCTTG+TGG - chr2.4:61811175-61811194 MS.gene02894:intron 45.0%
CAATCTGTCAAGGCTGCTAT+TGG - chr2.4:61809700-61809719 MS.gene02894:CDS 45.0%
CGTCAAAAACCTTGATGTCG+CGG - chr2.4:61809953-61809972 MS.gene02894:CDS 45.0%
CTGTCTTAAGCGAATCCACA+AGG + chr2.4:61811193-61811212 None:intergenic 45.0%
GAGGACAGAAACAACTGCAA+TGG - chr2.4:61811694-61811713 MS.gene02894:intron 45.0%
GATTGAATGCTTGGTCCCAA+AGG - chr2.4:61810028-61810047 MS.gene02894:CDS 45.0%
GCACTATCACAGAAAGCGAT+AGG - chr2.4:61810606-61810625 MS.gene02894:CDS 45.0%
GCAGCCTTGACAGATTGAAA+TGG + chr2.4:61809697-61809716 None:intergenic 45.0%
GTGACTAACTAGCTACCATC+TGG + chr2.4:61810060-61810079 None:intergenic 45.0%
TAAGGAGAAGGAACAAGCAG+CGG - chr2.4:61811247-61811266 MS.gene02894:intron 45.0%
TCCAAAGGAGACAGATTCTC+CGG - chr2.4:61809642-61809661 MS.gene02894:CDS 45.0%
TGTCAACACGATCTTACCAC+TGG + chr2.4:61811618-61811637 None:intergenic 45.0%
TTGGTGAAGTTCGTGTCAAC+CGG - chr2.4:61809728-61809747 MS.gene02894:CDS 45.0%
TTGTACCAGGAAGCAGATCA+TGG - chr2.4:61809851-61809870 MS.gene02894:CDS 45.0%
TTTGCTACCTTGTAGTTCGC+CGG + chr2.4:61811294-61811313 None:intergenic 45.0%
!! CAGTTTTAACCGCGACATCA+AGG + chr2.4:61809965-61809984 None:intergenic 45.0%
!!! AGATTTTGATGCCGCTTTGG+AGG - chr2.4:61810731-61810750 MS.gene02894:CDS 45.0%
AAAGGAGACAGATTCTCCGG+TGG - chr2.4:61809645-61809664 MS.gene02894:CDS 50.0%
AACAACTGCAATGGCTCAGG+TGG - chr2.4:61811703-61811722 MS.gene02894:intron 50.0%
AACCTAACCGGCGAACTACA+AGG - chr2.4:61811284-61811303 MS.gene02894:intron 50.0%
AAGGAGACAGATTCTCCGGT+GGG - chr2.4:61809646-61809665 MS.gene02894:CDS 50.0%
ACCATCTGGGTCATGCCTTT+GGG + chr2.4:61810046-61810065 None:intergenic 50.0%
ACCGGAGAATCTGTCTCCTT+TGG + chr2.4:61809646-61809665 None:intergenic 50.0%
AGCCAATTTCGCCTCCAAAG+CGG + chr2.4:61810745-61810764 None:intergenic 50.0%
GCGTTCGGCGAAATTGAACT+CGG - chr2.4:61810791-61810810 MS.gene02894:CDS 50.0%
GCTCTTGCTGCAAACCTAAC+CGG - chr2.4:61811272-61811291 MS.gene02894:intron 50.0%
GTCTCCGTTTCTGATTCCAG+TGG - chr2.4:61811599-61811618 MS.gene02894:intron 50.0%
TACCATCTGGGTCATGCCTT+TGG + chr2.4:61810047-61810066 None:intergenic 50.0%
TGGTGAAGTTCGTGTCAACC+GGG - chr2.4:61809729-61809748 MS.gene02894:CDS 50.0%
TTGGCTGCATTTCAGATGGC+AGG - chr2.4:61810759-61810778 MS.gene02894:CDS 50.0%
! TACCTTGTAGTTCGCCGGTT+AGG + chr2.4:61811289-61811308 None:intergenic 50.0%
!! CAGCAACAGATTTGGCTCTG+AGG - chr2.4:61811801-61811820 MS.gene02894:CDS 50.0%
AGATTCTCCGGTGGGAGAGA+GGG - chr2.4:61809654-61809673 MS.gene02894:CDS 55.0%
TCAATCTCCCTCTCTCCCAC+CGG + chr2.4:61809664-61809683 None:intergenic 55.0%
! TCCCAAAGGCATGACCCAGA+TGG - chr2.4:61810042-61810061 MS.gene02894:CDS 55.0%
!! GGCTCTGAGGAATGCAGAGA+TGG - chr2.4:61811814-61811833 MS.gene02894:CDS 55.0%
!! TGCCGCTTTGGAGGCGAAAT+TGG - chr2.4:61810740-61810759 MS.gene02894:CDS 55.0%
CAGATTCTCCGGTGGGAGAG+AGG - chr2.4:61809653-61809672 MS.gene02894:CDS 60.0%
GGCAGGAGAAGCTCAGCGTT+CGG - chr2.4:61810776-61810795 MS.gene02894:CDS 60.0%
TGCGGCCATGATCTGCTTCC+TGG + chr2.4:61809859-61809878 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 61809616 61811949 61809616 ID=MS.gene02894
chr2.4 mRNA 61809616 61811949 61809616 ID=MS.gene02894.t1;Parent=MS.gene02894
chr2.4 exon 61811779 61811949 61811779 ID=MS.gene02894.t1.exon1;Parent=MS.gene02894.t1
chr2.4 CDS 61811779 61811949 61811779 ID=cds.MS.gene02894.t1;Parent=MS.gene02894.t1
chr2.4 exon 61809616 61811190 61809616 ID=MS.gene02894.t1.exon2;Parent=MS.gene02894.t1
chr2.4 CDS 61809616 61811190 61809616 ID=cds.MS.gene02894.t1;Parent=MS.gene02894.t1
Gene Sequence

>MS.gene02894

ATGAGTTTCCGAAACAGAGATAGTTCTCCAAAGGAGACAGATTCTCCGGTGGGAGAGAGGGAGATTGACACAAGAGCACCATTTCAATCTGTCAAGGCTGCTATTGGTTTGTTTGGTGAAGTTCGTGTCAACCGGGATAGAAATAATTCTATCAAGAGAAGATCTTCAGAGGTAAACATCACAGCCGCTATCCTTAATATTGCAAATAATCGTTGGAAACTCCTTTTTTTTTTTTTTGTACCAGGAAGCAGATCATGGCCGCAATCCTTAATATTACAAATAACCATGGTTAAATTTTGCGAATAATTGCAGTCAAATGCAGCCTTAATCGCATAGACGTCAAAAACCTTGATGTCGCGGTTAAAACTGCAGTTGCTAGTTGCAGACCATTTTGTCATAACCCTGCTTCGAAGATTGAATGCTTGGTCCCAAAGGCATGACCCAGATGGTAGCTAGTTAGTCACTTACATAATTTTAATCAGTGTTGTCAACTGAGAATCGCAGAAAATAGCAGTTTGTTCAAATTCGGCCATGCTATAGTGCTATATTGTATTGCACAACAATAGCGATTGGTTCGAATTCTGTTATGCAATAGCTGTTATTTGACAACGCCAATTTTAATACAAGAGGCACACACAACATGAGAAGATTTTCAAGTTTGCGTGATTTTGGAATTCAGAAATTTTATCATTTTTCATTGTGTTAGTGTCATTATTTATGAGTTATGCGTCAAGGTCATTAACTTTGTGTGATATGCAGAATGTATTGGAAAAGGAGACTCAGCTTCTCTTGGCTCAAAGAGAACTGAACAAGATAAAGAAAAAGCTTGAAAGTGCTGAGAGTACAAAAGCTAAAGCGCTTATCGAGCTTGATAAGGCCAATATAACACTTCAAGAATTGACAAAGAAACTCAACACTGTGAGAGAATCAAAGCAATCTGCAATGGAAGAAAGTGAGGTTGTGAAGAATCAAGCCAAAGAACTCGAAAAGGCACTATCACAGAAAGCGATAGGGTATGAAGCTTGGAAACAAGAACTAGAACATGCAAGAAAGGAGTACACCACAACTGTAAAAGAACTAGATGCTTCCAAGCAAGAACTTAACAAAATAAGACAAGATTTTGATGCCGCTTTGGAGGCGAAATTGGCTGCATTTCAGATGGCAGGAGAAGCTCAGCGTTCGGCGAAATTGAACTCGGAAAAGATCAATGAACTTTCAAAGGAAATTGCAACCATGAAAGCATCAAGAGAAGAACTCAAGCTTGCAACTGCACAAGCACAAGAAGAACAGATTAAAGCGATGGGAGAAAGAGAAGAAAAGTTAAACTTTTACAAAACTTCAAAGGAAGAAATAGATAATAAATTGATGGAAGTGAAGAATGAGTATGATCCTGAAGAAACACAAAGTCTCGAGGCAAAACTTGCTGAAACAAGTGCTGAAATTCAGGTTCTTCAAGAGAAGATAAAAGAGTTTCGTAATTCTGAGATGGATTCTGTCGAGTTAATAACTTTGGAAATCAAAGAAGCAACAAAGACACTGCAAGAAATTTCTGAAGAAGAAGCTTCACTGAGAAACCTTGTGGATTCGCTTAAGACAGAATTAGAACAAGTGAAGAAAGAACAAGAGGAACTTAAGGAGAAGGAACAAGCAGCGGAAGCTCTTGCTGCAAACCTAACCGGCGAACTACAAGGTAGCAAAGAAAAGGAAGATTCTATGGAAAACAAAGAATCTAATGAGAGTCATTGTCAAGAAATGGAGTTGAAAATCAAGCAGTTATCATTCGAGACGGAAAATGCAAGAAAAGAAGAAGAAGAGATGAGAATGAAAGCTCAGGAACTGAAACAAGAAGCTGAGAATTCCAAAGCTTTGTCTGAAGAAATAGAAGGTAAACTAGAGATTTTATTTAAACAAGCTGAAGAAGCAAAAGCAGATGAAAAAAGAGCTGTTGAGGAGATGAAGTTGTTGTCTGACGCACAAGGTAGTGTCTCCGTTTCTGATTCCAGTGGTAAGATCGTGTTGACAGTTGATGAATTTGCTGCTCTAAGTGGAAAAATCAATGAATGTGAAGATTTGATTGAGAGGACAGAAACAACTGCAATGGCTCAGGTGGAAGCAATCAACACAAGAAGAAATGAAGTGAACAAAAAAGTCGAAGCTAATCTTCAAGCAATCGAAGAAATAAAAGCAGCAACAGATTTGGCTCTGAGGAATGCAGAGATGGCAGACTCAGCAAAACTAGCAGTTGAAGGTGAATTAAAGAAGTGGCGTCAAGAAGAACAAAAAGGTTTGGATTTGTCGGATAACTCTTCAACACCAATCTCGCTGCAGAGCTAG
Protein sequence

>MS.gene02894.t1

MSFRNRDSSPKETDSPVGEREIDTRAPFQSVKAAIGLFGEVRVNRDRNNSIKRRSSENVLEKETQLLLAQRELNKIKKKLESAESTKAKALIELDKANITLQELTKKLNTVRESKQSAMEESEVVKNQAKELEKALSQKAIGYEAWKQELEHARKEYTTTVKELDASKQELNKIRQDFDAALEAKLAAFQMAGEAQRSAKLNSEKINELSKEIATMKASREELKLATAQAQEEQIKAMGEREEKLNFYKTSKEEIDNKLMEVKNEYDPEETQSLEAKLAETSAEIQVLQEKIKEFRNSEMDSVELITLEIKEATKTLQEISEEEASLRNLVDSLKTELEQVKKEQEELKEKEQAAEALAANLTGELQGSKEKEDSMENKESNESHCQEMELKIKQLSFETENARKEEEEMRMKAQELKQEAENSKALSEEIEGKLEILFKQAEEAKADEKRAVEEMKLLSDAQGSVSVSDSSGKIVLTVDEFAALSGKINECEDLIERTETTAMAQVEAINTRRNEVNKKVEANLQAIEEIKAATDLALRNAEMADSAKLAVEGELKKWRQEEQKGLDLSDNSSTPISLQS