AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029154

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029154.t1 MTR_1g115210 97.090 378 11 0 1 378 107 484 0.0 750
MS.gene029154.t1 MTR_1g039270 71.948 385 101 2 1 378 83 467 0.0 554
MS.gene029154.t1 MTR_1g111350 50.789 380 177 4 1 378 94 465 5.07e-131 384
MS.gene029154.t1 MTR_7g117430 49.608 383 187 5 1 378 101 482 5.83e-122 361
MS.gene029154.t1 MTR_6g085010 44.924 394 196 6 1 380 104 490 7.85e-110 330
MS.gene029154.t1 MTR_8g103880 38.547 358 211 6 20 373 96 448 4.75e-89 276
MS.gene029154.t1 MTR_3g097150 38.381 383 212 10 6 377 74 443 3.34e-82 258
MS.gene029154.t1 MTR_4g007740 36.776 397 219 10 4 379 91 476 5.17e-73 235
MS.gene029154.t1 MTR_3g053710 39.106 358 195 10 37 378 114 464 8.13e-72 232
MS.gene029154.t1 MTR_5g044770 36.932 352 202 11 39 379 85 427 1.66e-69 225
MS.gene029154.t1 MTR_3g046300 36.000 375 203 7 32 377 89 455 2.76e-69 225
MS.gene029154.t1 MTR_8g096990 34.026 385 235 11 6 379 52 428 9.23e-67 218
MS.gene029154.t1 MTR_2g028190 33.251 406 225 14 3 377 58 448 1.18e-66 218
MS.gene029154.t1 MTR_3g053980 39.944 358 196 8 32 378 134 483 1.18e-66 219
MS.gene029154.t1 MTR_5g080890 35.537 363 195 11 39 379 85 430 2.90e-65 214
MS.gene029154.t1 MTR_5g080960 35.813 363 194 11 39 379 85 430 2.21e-64 212
MS.gene029154.t1 MTR_5g091130 33.661 407 239 10 1 377 145 550 3.78e-64 214
MS.gene029154.t1 MTR_8g038280 34.551 356 210 11 39 379 85 432 1.17e-61 204
MS.gene029154.t1 MTR_2g059460 32.990 388 225 12 10 379 33 403 7.50e-58 194
MS.gene029154.t1 MTR_6g090290 34.197 386 234 9 8 379 54 433 3.53e-57 193
MS.gene029154.t1 MTR_2g059490 34.637 358 214 12 40 382 58 410 6.21e-56 190
MS.gene029154.t1 MTR_0036s0110 29.902 408 234 15 3 383 61 443 4.94e-55 187
MS.gene029154.t1 MTR_2g067830 33.333 393 234 16 6 379 20 403 1.13e-54 186
MS.gene029154.t1 MTR_5g038360 32.316 393 242 13 1 379 51 433 3.00e-54 185
MS.gene029154.t1 MTR_0036s0070 30.909 385 233 12 10 379 57 423 4.33e-53 182
MS.gene029154.t1 MTR_8g038310 32.134 389 227 12 2 379 48 410 4.48e-53 181
MS.gene029154.t1 MTR_3g028120 33.799 358 213 12 38 379 86 435 4.53e-53 182
MS.gene029154.t1 MTR_6g088760 32.425 367 220 12 1 347 46 404 1.05e-52 183
MS.gene029154.t1 MTR_4g109760 33.994 353 206 11 41 379 56 395 3.18e-52 179
MS.gene029154.t1 MTR_5g008150 32.376 383 236 11 12 379 35 409 3.16e-51 177
MS.gene029154.t1 MTR_5g008070 33.518 361 215 10 37 383 78 427 4.69e-51 176
MS.gene029154.t1 MTR_5g008110 32.958 355 216 11 39 379 66 412 1.91e-50 174
MS.gene029154.t1 MTR_8g038250 32.670 352 202 9 39 379 85 412 7.56e-50 173
MS.gene029154.t1 MTR_0036s0050 30.326 399 234 12 10 383 57 436 1.23e-49 173
MS.gene029154.t1 MTR_0024s0040 32.295 353 216 12 41 379 64 407 3.82e-49 171
MS.gene029154.t1 MTR_1g037630 34.971 346 207 9 38 376 90 424 3.15e-48 169
MS.gene029154.t1 MTR_3g014290 34.971 346 207 9 38 376 78 412 4.44e-48 168
MS.gene029154.t1 MTR_2g105300 31.552 393 219 17 6 379 20 381 5.61e-48 167
MS.gene029154.t1 MTR_5g044570 31.486 397 219 18 2 379 46 408 6.06e-46 162
MS.gene029154.t1 MTR_4g045857 40.092 217 117 6 40 243 58 274 8.19e-45 156
MS.gene029154.t1 MTR_8g039540 35.652 345 207 10 38 376 94 429 2.87e-44 159
MS.gene029154.t1 MTR_2g055840 31.180 356 213 10 41 370 14 363 1.14e-42 153
MS.gene029154.t1 MTR_3g100500 32.584 356 222 9 30 376 87 433 4.02e-42 153
MS.gene029154.t1 MTR_2g070430 29.396 381 219 12 38 380 85 453 4.34e-38 142
MS.gene029154.t1 MTR_1g060750 26.650 394 235 15 7 383 21 377 1.40e-37 139
MS.gene029154.t1 MTR_7g102750 28.019 414 253 14 1 379 36 439 2.72e-33 130
MS.gene029154.t1 MTR_3g068000 29.491 373 213 17 43 376 76 437 8.87e-33 128
MS.gene029154.t1 MTR_7g102750 28.462 390 234 14 1 355 36 415 5.83e-32 125
MS.gene029154.t1 MTR_4g100990 28.000 400 218 16 40 376 74 466 7.47e-32 125
MS.gene029154.t1 MTR_7g062360 30.667 375 204 18 43 376 62 421 5.97e-31 122
MS.gene029154.t1 MTR_5g012490 26.434 401 228 15 40 379 74 468 8.47e-31 122
MS.gene029154.t1 MTR_7g105850 28.608 388 214 14 39 377 89 462 3.41e-30 121
MS.gene029154.t1 MTR_2g063110 25.850 441 257 14 1 377 71 505 1.27e-29 120
MS.gene029154.t1 MTR_2g084550 28.852 357 198 16 39 357 76 414 5.38e-29 117
MS.gene029154.t1 MTR_4g056420 27.419 372 229 15 38 379 75 435 2.15e-28 116
MS.gene029154.t1 MTR_4g095270 26.722 363 232 12 38 384 78 422 2.95e-28 116
MS.gene029154.t1 MTR_3g065160 27.198 364 223 15 43 379 77 425 3.28e-28 115
MS.gene029154.t1 MTR_1g061940 27.845 413 254 14 1 379 41 443 3.96e-28 115
MS.gene029154.t1 MTR_4g095270 26.722 363 232 12 38 384 78 422 4.82e-28 116
MS.gene029154.t1 MTR_5g016260 26.039 361 237 11 38 384 86 430 1.21e-27 114
MS.gene029154.t1 MTR_5g077850 27.273 363 228 15 43 379 84 436 1.28e-27 113
MS.gene029154.t1 MTR_5g016260 25.762 361 238 11 38 384 86 430 2.33e-27 114
MS.gene029154.t1 MTR_7g021510 25.526 380 232 13 32 375 64 428 7.48e-27 111
MS.gene029154.t1 MTR_5g008090 29.967 307 184 11 92 379 17 311 1.41e-26 108
MS.gene029154.t1 MTR_1g078240 25.995 377 234 14 32 375 61 425 1.30e-25 108
MS.gene029154.t1 MTR_7g080230 25.532 376 235 14 32 375 63 425 2.88e-25 107
MS.gene029154.t1 MTR_1g078240 28.308 325 198 13 32 331 61 375 6.39e-25 105
MS.gene029154.t1 MTR_1g078240 25.995 377 233 15 32 375 61 424 1.63e-24 105
MS.gene029154.t1 MTR_5g022880 26.110 383 212 16 41 383 113 464 1.77e-22 99.4
MS.gene029154.t1 MTR_8g094590 24.798 371 230 15 39 379 72 423 1.65e-21 95.9
MS.gene029154.t1 MTR_6g084710 25.238 420 249 20 2 375 145 545 1.82e-21 96.7
MS.gene029154.t1 MTR_8g075010 26.133 375 220 14 41 382 101 451 2.34e-21 95.9
MS.gene029154.t1 MTR_5g077920 26.625 323 206 13 43 342 71 385 2.39e-20 92.4
MS.gene029154.t1 MTR_6g084710 26.871 294 183 12 2 273 145 428 2.49e-20 92.8
MS.gene029154.t1 MTR_3g096930 25.067 375 223 15 39 379 83 433 3.53e-20 92.0
MS.gene029154.t1 MTR_8g075090 27.446 368 208 20 41 375 113 454 4.86e-20 92.0
MS.gene029154.t1 MTR_8g075090 27.446 368 208 20 41 375 113 454 5.34e-20 91.7
MS.gene029154.t1 MTR_8g094590 28.175 252 149 10 39 276 72 305 9.83e-20 89.4
MS.gene029154.t1 MTR_5g061690 25.564 399 250 14 1 375 69 444 1.46e-19 90.5
MS.gene029154.t1 MTR_8g094590 28.175 252 149 10 39 276 72 305 2.20e-19 89.4
MS.gene029154.t1 MTR_8g075090 27.597 308 174 16 41 320 113 399 2.74e-18 86.7
MS.gene029154.t1 MTR_2g022450 24.747 396 223 16 35 375 35 410 8.71e-18 84.7
MS.gene029154.t1 MTR_4g023650 25.581 387 224 19 31 376 52 415 4.22e-17 82.8
MS.gene029154.t1 MTR_1g029810 25.203 369 224 15 39 375 56 404 5.10e-17 82.4
MS.gene029154.t1 MTR_1g029810 25.203 369 224 15 39 375 56 404 6.09e-17 82.4
MS.gene029154.t1 MTR_3g006820 23.575 386 245 17 26 379 44 411 2.82e-16 80.1
MS.gene029154.t1 MTR_3g087780 24.654 361 231 11 41 375 100 445 4.23e-16 80.1
MS.gene029154.t1 MTR_4g023630 24.416 385 231 17 31 376 52 415 6.72e-16 79.3
MS.gene029154.t1 MTR_4g117090 23.342 407 223 17 40 375 49 437 8.27e-13 69.7
MS.gene029154.t1 MTR_7g080230 23.256 344 213 15 72 383 33 357 4.20e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029154.t1 AT3G20015 73.698 384 95 1 1 378 85 468 0.0 557
MS.gene029154.t1 AT3G18490 50.505 396 175 4 1 378 106 498 2.08e-132 389
MS.gene029154.t1 AT1G25510 47.837 393 186 4 1 378 93 481 7.98e-127 374
MS.gene029154.t1 AT1G01300 49.096 387 186 5 1 377 96 481 3.53e-120 357
MS.gene029154.t1 AT3G61820 47.074 393 189 6 1 375 87 478 3.90e-116 347
MS.gene029154.t1 AT5G10770 39.130 391 218 9 1 378 88 471 4.20e-85 266
MS.gene029154.t1 AT5G10760 38.120 383 223 7 1 378 89 462 1.90e-73 236
MS.gene029154.t1 AT2G03200 36.944 360 205 10 37 379 103 457 2.82e-73 236
MS.gene029154.t1 AT5G33340 35.623 393 231 12 1 379 49 433 2.36e-66 217
MS.gene029154.t1 AT1G79720 35.279 394 223 7 4 375 94 477 6.81e-66 217
MS.gene029154.t1 AT1G64830 35.115 393 230 13 2 379 45 427 1.47e-63 209
MS.gene029154.t1 AT3G25700 33.867 375 220 11 28 375 71 444 9.80e-61 202
MS.gene029154.t1 AT3G59080 32.000 400 247 7 2 377 131 529 4.22e-58 198
MS.gene029154.t1 AT2G42980 33.085 402 241 11 2 377 122 521 2.69e-57 196
MS.gene029154.t1 AT1G09750 33.247 385 236 10 4 377 71 445 1.13e-56 192
MS.gene029154.t1 AT2G28040 32.303 356 204 9 40 382 55 386 7.80e-55 185
MS.gene029154.t1 AT2G28040 32.303 356 204 9 40 382 64 395 1.15e-54 185
MS.gene029154.t1 AT3G54400 33.913 345 213 8 38 376 85 420 4.10e-54 184
MS.gene029154.t1 AT2G28010 31.218 394 227 10 1 382 35 396 4.17e-52 179
MS.gene029154.t1 AT2G28030 32.203 354 206 9 41 382 61 392 1.70e-51 177
MS.gene029154.t1 AT3G59080 31.139 395 221 8 2 377 131 493 3.44e-50 176
MS.gene029154.t1 AT1G31450 29.923 391 246 12 10 379 57 440 1.51e-47 167
MS.gene029154.t1 AT2G28220 31.198 359 207 12 41 382 67 402 3.88e-46 163
MS.gene029154.t1 AT2G35615 28.753 393 253 13 10 379 54 442 4.95e-45 161
MS.gene029154.t1 AT5G07030 33.238 349 213 9 38 376 112 450 5.18e-45 161
MS.gene029154.t1 AT4G30040 31.503 346 207 11 41 367 85 419 2.00e-41 151
MS.gene029154.t1 AT2G28225 29.096 354 212 11 41 379 67 396 2.39e-41 150
MS.gene029154.t1 AT2G23945 31.073 354 203 15 41 367 96 435 9.63e-39 144
MS.gene029154.t1 AT3G12700 28.354 395 253 13 4 378 74 458 1.47e-34 133
MS.gene029154.t1 AT3G02740 28.532 361 221 14 41 375 10 359 3.21e-34 131
MS.gene029154.t1 AT3G02740 28.650 363 222 14 39 375 83 434 3.52e-34 132
MS.gene029154.t1 AT4G30030 30.612 343 202 14 41 364 78 403 4.30e-34 131
MS.gene029154.t1 AT2G36670 30.649 385 223 15 29 379 82 456 8.23e-34 131
MS.gene029154.t1 AT2G36670 30.245 367 218 14 41 379 34 390 2.23e-33 129
MS.gene029154.t1 AT2G36670 30.245 367 218 14 41 379 34 390 2.23e-33 129
MS.gene029154.t1 AT2G36670 30.245 367 218 14 41 379 105 461 2.82e-33 130
MS.gene029154.t1 AT2G39710 29.867 375 211 17 43 378 67 428 3.97e-33 129
MS.gene029154.t1 AT5G43100 28.291 357 220 13 38 375 73 412 3.16e-32 127
MS.gene029154.t1 AT5G43100 28.291 357 220 13 38 375 73 412 4.05e-32 128
MS.gene029154.t1 AT5G36260 27.660 329 202 12 39 344 76 391 1.91e-30 122
MS.gene029154.t1 AT1G66180 27.596 366 232 13 38 379 69 425 6.12e-30 119
MS.gene029154.t1 AT5G22850 28.312 385 230 18 3 357 49 417 3.01e-29 119
MS.gene029154.t1 AT5G02190 29.491 373 203 19 50 377 82 439 2.44e-28 115
MS.gene029154.t1 AT1G05840 27.493 371 220 15 39 375 78 433 2.80e-28 115
MS.gene029154.t1 AT5G37540 27.222 360 227 13 43 375 82 433 9.86e-28 114
MS.gene029154.t1 AT3G50050 27.297 370 222 13 38 384 90 435 1.11e-26 112
MS.gene029154.t1 AT1G65240 26.444 329 203 13 39 344 72 384 3.37e-26 109
MS.gene029154.t1 AT5G45120 24.939 413 240 16 30 379 72 477 1.76e-25 107
MS.gene029154.t1 AT1G49050 25.416 421 241 19 7 379 172 567 2.38e-24 105
MS.gene029154.t1 AT1G49050 28.146 302 181 13 7 287 172 458 3.31e-24 103
MS.gene029154.t1 AT3G25700 38.926 149 77 4 28 162 71 219 3.88e-24 102
MS.gene029154.t1 AT1G08210 27.642 369 228 14 39 379 82 439 6.87e-24 103
MS.gene029154.t1 AT1G77480 27.805 410 231 20 5 379 39 418 7.89e-24 102
MS.gene029154.t1 AT1G08210 27.642 369 228 14 39 379 116 473 7.90e-24 103
MS.gene029154.t1 AT3G52500 27.202 386 223 15 39 376 88 463 9.32e-24 102
MS.gene029154.t1 AT1G77480 27.805 410 231 20 5 379 39 418 1.16e-23 102
MS.gene029154.t1 AT1G08210 27.642 369 228 14 39 379 130 487 1.32e-23 102
MS.gene029154.t1 AT1G49050 25.065 387 220 18 41 379 30 394 1.39e-23 101
MS.gene029154.t1 AT4G12920 26.425 386 227 12 6 367 22 374 6.69e-23 99.4
MS.gene029154.t1 AT1G08210 28.829 333 199 13 39 344 82 403 7.74e-23 100
MS.gene029154.t1 AT3G51350 26.301 365 207 15 41 375 102 434 3.34e-21 95.5
MS.gene029154.t1 AT2G17760 25.824 364 226 15 41 379 104 448 4.19e-20 92.4
MS.gene029154.t1 AT3G51340 28.065 367 205 18 41 375 103 442 1.38e-19 90.9
MS.gene029154.t1 AT4G35880 24.595 370 228 13 41 382 107 453 1.70e-19 90.5
MS.gene029154.t1 AT4G16563 26.952 397 203 17 58 376 100 487 3.76e-19 89.4
MS.gene029154.t1 AT4G35880 25.656 343 204 13 41 355 107 426 1.80e-18 87.0
MS.gene029154.t1 AT1G44130 26.247 381 212 18 39 379 47 398 3.76e-18 85.9
MS.gene029154.t1 AT4G33490 25.266 376 223 15 39 379 58 410 4.19e-18 85.9
MS.gene029154.t1 AT3G51340 27.707 314 174 14 41 325 103 392 1.15e-17 84.3
MS.gene029154.t1 AT4G33490 29.930 284 156 13 13 275 27 288 2.83e-17 83.2
MS.gene029154.t1 AT3G42550 23.810 378 213 16 1 357 43 366 1.07e-16 81.6
MS.gene029154.t1 AT5G10080 24.129 402 251 15 13 378 68 451 1.64e-16 81.6
MS.gene029154.t1 AT3G51360 23.925 372 236 14 35 379 93 444 6.72e-16 79.7
MS.gene029154.t1 AT3G51360 23.873 377 240 14 35 384 83 439 7.86e-16 79.3
MS.gene029154.t1 AT3G51360 24.713 348 215 14 35 355 93 420 1.19e-15 78.6
MS.gene029154.t1 AT3G51360 24.839 310 189 12 35 320 93 382 1.54e-15 78.2
MS.gene029154.t1 AT3G51360 24.713 348 215 14 35 355 83 410 1.89e-15 77.8
MS.gene029154.t1 AT3G51360 23.720 371 236 14 41 384 5 355 1.97e-15 77.8
MS.gene029154.t1 AT3G51340 26.804 291 163 13 41 302 103 372 2.21e-15 77.4
MS.gene029154.t1 AT3G51360 24.839 310 189 12 35 320 83 372 2.30e-15 77.4
MS.gene029154.t1 AT3G51340 26.804 291 163 13 41 302 103 372 2.69e-15 77.8
MS.gene029154.t1 AT3G51360 25.000 264 156 10 35 276 93 336 3.13e-13 70.5
MS.gene029154.t1 AT5G48430 28.448 232 147 7 159 375 161 388 7.56e-13 69.7

Find 154 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCGGGCAGTGACATTATT+TGG 0.112279 1.3:+78205575 MS.gene029154:CDS
GGCTTTCGGGTCTTGGAGTT+GGG 0.185714 1.3:+78206085 MS.gene029154:CDS
TTCGGGTCGGGTGTGGTTTC+GGG 0.195700 1.3:+78205475 MS.gene029154:CDS
GCATTTGCTCCTTCTTCTTC+AGG 0.218132 1.3:+78206426 MS.gene029154:CDS
AATGGATACTCCTGATGTTT+TGG 0.222815 1.3:-78206262 None:intergenic
GTTCGGGTCGGGTGTGGTTT+CGG 0.228106 1.3:+78205474 MS.gene029154:CDS
GCCGGCTTACAATGCATTTC+GGG 0.244466 1.3:+78206209 MS.gene029154:CDS
GGTATGTTTGTTGGAGCAGC+TGG 0.262458 1.3:+78205862 MS.gene029154:CDS
TCATCTGGGTCGCTAGAATT+TGG 0.263511 1.3:+78205985 MS.gene029154:CDS
TGCCGTTATGAGGTTTCTTA+TGG 0.268217 1.3:+78205739 MS.gene029154:CDS
CGCCGGCTTACAATGCATTT+CGG 0.291370 1.3:+78206208 MS.gene029154:CDS
GGATGGAGCTAATGGGTATA+TGG 0.294523 1.3:+78206497 MS.gene029154:CDS
TATATCGGGCTTTCGGGTCT+TGG 0.310043 1.3:+78206078 MS.gene029154:CDS
ATCGTACTATATAGGATAAA+TGG 0.314844 1.3:+78206678 MS.gene029154:intron
GGGCTTTCGGGTCTTGGAGT+TGG 0.316663 1.3:+78206084 MS.gene029154:CDS
CGCCAGTCTGACCACCTAAT+TGG 0.318952 1.3:-78205924 None:intergenic
GCAGCTGGGTTGTTGGGTCT+TGG 0.325606 1.3:+78205877 MS.gene029154:CDS
TCTTCAGGACTTTCCATCAT+AGG 0.325784 1.3:+78206441 MS.gene029154:CDS
AAACGGGTTTGTGACGGTTC+GGG 0.329915 1.3:+78206305 MS.gene029154:CDS
AAATTTCAATCCCTTCTTGC+TGG 0.331540 1.3:-78206470 None:intergenic
GAATGGAGAGAGATTCTAAA+AGG 0.332342 1.3:+78205398 None:intergenic
TTGCTGGATGTTTCCTATGA+TGG 0.341457 1.3:-78206454 None:intergenic
AAATGAATTGGGTGAGGGAG+GGG 0.345584 1.3:+78206146 MS.gene029154:CDS
ACCCGAGAAATAAAATGATA+TGG 0.346874 1.3:-78206334 None:intergenic
GCTTTCGGGTCTTGGAGTTG+GGG 0.348212 1.3:+78206086 MS.gene029154:CDS
CCAATACGTGGTTATTGATT+CGG 0.350961 1.3:+78205558 MS.gene029154:CDS
ATTTCAGTGGATGGAGCTAA+TGG 0.353637 1.3:+78206489 MS.gene029154:CDS
GCTAATGGGTATATGGGATT+TGG 0.357251 1.3:+78206504 MS.gene029154:CDS
GGGTTGTTGGGTCTTGGAAG+TGG 0.359095 1.3:+78205883 MS.gene029154:CDS
CTTTCGGGTCTTGGAGTTGG+GGG 0.359398 1.3:+78206087 MS.gene029154:CDS
GACACATGTTATGATTTAAA+CGG 0.361043 1.3:+78206288 MS.gene029154:CDS
GAGCCCGTGGGTTATGAATC+AGG 0.367672 1.3:-78206044 None:intergenic
TTCGGGCAGTGACATTATTT+GGG 0.368954 1.3:+78205576 MS.gene029154:CDS
TAGTTATTGTTTAGTGAGTC+GGG 0.376613 1.3:+78205954 MS.gene029154:CDS
CAATACGTGGTTATTGATTC+GGG 0.383620 1.3:+78205559 MS.gene029154:CDS
GTCGGGTGTGGTTTCGGGTA+TGG 0.397951 1.3:+78205480 MS.gene029154:CDS
GGTTGTTGGGTCTTGGAAGT+GGG 0.398428 1.3:+78205884 MS.gene029154:CDS
TAAACGGGTTTGTGACGGTT+CGG 0.403107 1.3:+78206304 MS.gene029154:CDS
GCCGTTATGAGGTTTCTTAT+GGG 0.404335 1.3:+78205740 MS.gene029154:CDS
AGTCGGGGCACTGAATCATC+TGG 0.406241 1.3:+78205970 MS.gene029154:CDS
ACACATGTTATGATTTAAAC+GGG 0.407880 1.3:+78206289 MS.gene029154:CDS
GTTGGAGCAGCTGGGTTGTT+GGG 0.408232 1.3:+78205871 MS.gene029154:CDS
GGGGTTGAGGGTTCCTATAT+CGG 0.418943 1.3:+78206107 MS.gene029154:CDS
TGTTGGAGCAGCTGGGTTGT+TGG 0.420595 1.3:+78205870 MS.gene029154:CDS
TGCCCTTGAGACTGTTACAT+TGG 0.427294 1.3:+78205789 MS.gene029154:CDS
GGTATGAAACAGAGGAGTTC+GGG 0.428364 1.3:+78205458 MS.gene029154:CDS
GGAGAGTATTTCGTAAGAAT+AGG 0.441186 1.3:+78205514 MS.gene029154:CDS
AGGAACCAGGGTATGTTTGT+TGG 0.444845 1.3:+78205853 MS.gene029154:CDS
CGGGTGTGGGCATAGGAACC+AGG 0.446262 1.3:+78205840 MS.gene029154:CDS
TTAGTTATTGTTTAGTGAGT+CGG 0.448984 1.3:+78205953 MS.gene029154:CDS
CGGCGAATCGCCGGTAGCGT+CGG 0.452344 1.3:+78205436 MS.gene029154:CDS
TATGAGGTTTCTTATGGGGA+TGG 0.454223 1.3:+78205745 MS.gene029154:CDS
GTGATCCGAAACGTGGCTAT+CGG 0.454470 1.3:+78205820 MS.gene029154:CDS
CGGTGCCTGTGGGTGCTTCG+TGG 0.456663 1.3:+78206016 MS.gene029154:CDS
GCCCTTGAGACTGTTACATT+GGG 0.458217 1.3:+78205790 MS.gene029154:CDS
CGAAACGTGGCTATCGGGTG+TGG 0.461598 1.3:+78205826 MS.gene029154:CDS
CCGAATCAATAACCACGTAT+TGG 0.463017 1.3:-78205558 None:intergenic
GCCGTTGTGCGGCGAATCGC+CGG 0.464829 1.3:+78205427 MS.gene029154:CDS
GGGGATTCTTCATCTTATGC+TGG 0.467858 1.3:+78205655 MS.gene029154:CDS
GCTAGAATTTGGACGAGAAT+CGG 0.468088 1.3:+78205996 MS.gene029154:CDS
GGGTATGAAACAGAGGAGTT+CGG 0.473494 1.3:+78205457 MS.gene029154:CDS
TGATCCGAAACGTGGCTATC+GGG 0.475223 1.3:+78205821 MS.gene029154:CDS
GTCGGATTGGTGATAACATT+GGG 0.477208 1.3:-78205617 None:intergenic
GGCGAATCGCCGGTAGCGTC+GGG 0.478355 1.3:+78205437 MS.gene029154:CDS
ATGAGGTTTCTTATGGGGAT+GGG 0.479148 1.3:+78205746 MS.gene029154:CDS
GATGGAGCTAATGGGTATAT+GGG 0.482882 1.3:+78206498 MS.gene029154:CDS
TGAAGGGAGGTGCCGTTATG+AGG 0.492322 1.3:+78205729 MS.gene029154:CDS
TAAATGAATTGGGTGAGGGA+GGG 0.493214 1.3:+78206145 MS.gene029154:CDS
TGGCTATCGGGTGTGGGCAT+AGG 0.493489 1.3:+78205833 MS.gene029154:CDS
TTTCGGGTCTTGGAGTTGGG+GGG 0.497028 1.3:+78206088 MS.gene029154:CDS
GGTGCCTGTGGGTGCTTCGT+GGG 0.499303 1.3:+78206017 MS.gene029154:CDS
TGGTGATAACATTGGGTACA+TGG 0.501291 1.3:-78205610 None:intergenic
TTTCAGTGGATGGAGCTAAT+GGG 0.503081 1.3:+78206490 MS.gene029154:CDS
GAAACAGAGGAGTTCGGGTC+GGG 0.503157 1.3:+78205463 MS.gene029154:CDS
GGGATTGAAATTTCAGTGGA+TGG 0.503329 1.3:+78206480 MS.gene029154:CDS
CTAGCTGGAAGGGTCAATAT+AGG 0.505927 1.3:-78206360 None:intergenic
TATTTCGTAAGAATAGGAGT+TGG 0.506635 1.3:+78205520 MS.gene029154:CDS
AGAGGAGTTCGGGTCGGGTG+TGG 0.509324 1.3:+78205468 MS.gene029154:CDS
GGCCAATTAGGTGGTCAGAC+TGG 0.513423 1.3:+78205922 MS.gene029154:CDS
GGAGGGGTGGTCATGGACAC+CGG 0.514573 1.3:+78206162 MS.gene029154:CDS
CACACCCGATAGCCACGTTT+CGG 0.514707 1.3:-78205825 None:intergenic
GGGTGAGGGAGGGGTGGTCA+TGG 0.515063 1.3:+78206155 MS.gene029154:CDS
TCGGTTAAATGAATTGGGTG+AGG 0.515639 1.3:+78206140 MS.gene029154:CDS
TTAAATGAATTGGGTGAGGG+AGG 0.517316 1.3:+78206144 MS.gene029154:CDS
GGAATTAAGAAGTTCCTAGC+TGG 0.517708 1.3:-78206375 None:intergenic
GCATAAGATGAAGAATCCCC+CGG 0.520903 1.3:-78205652 None:intergenic
GAGAAATAAAATGATATGGT+TGG 0.523017 1.3:-78206330 None:intergenic
GGGATGGGTCCTATACTAAA+GGG 0.523693 1.3:+78205761 MS.gene029154:CDS
CCGTTATGAGGTTTCTTATG+GGG 0.528759 1.3:+78205741 MS.gene029154:CDS
TGTAGCCGTGTGGAGAATGC+AGG 0.531669 1.3:+78205700 MS.gene029154:CDS
CGGTTAAATGAATTGGGTGA+GGG 0.533268 1.3:+78206141 MS.gene029154:CDS
TCCCGAAATGCATTGTAAGC+CGG 0.534505 1.3:-78206210 None:intergenic
TAACCTCGTCACGGCAGTGC+CGG 0.534510 1.3:-78206181 None:intergenic
TTTCCCTGATTCATAACCCA+CGG 0.537283 1.3:+78206040 MS.gene029154:CDS
TGAATTGGGTGAGGGAGGGG+TGG 0.537828 1.3:+78206149 MS.gene029154:CDS
GGGGATGGGTCCTATACTAA+AGG 0.538590 1.3:+78205760 MS.gene029154:CDS
GGCAAGTGTCCCTTTAGTAT+AGG 0.540324 1.3:-78205770 None:intergenic
CTTGAGACTGTTACATTGGG+AGG 0.541400 1.3:+78205793 MS.gene029154:CDS
TCGGGTATGGAGCAAGGAAG+TGG 0.542447 1.3:+78205493 MS.gene029154:CDS
ACCGGCGATTCGCCGCACAA+CGG 0.545210 1.3:-78205428 None:intergenic
ACAAACCTACCCAAAACATC+AGG 0.549290 1.3:+78206252 MS.gene029154:CDS
TAGGAAACATCCAGCAAGAA+GGG 0.550149 1.3:+78206460 MS.gene029154:CDS
GAAACCCACGAAGCACCCAC+AGG 0.551071 1.3:-78206021 None:intergenic
GGTCGGATTGGTGATAACAT+TGG 0.551981 1.3:-78205618 None:intergenic
CTTAATTCCAGTGGATAGTG+TGG 0.552435 1.3:+78206389 MS.gene029154:CDS
GTGGTTTCGGGTATGGAGCA+AGG 0.556095 1.3:+78205487 MS.gene029154:CDS
TCTTATGCTGGTGTGTCTTG+CGG 0.561796 1.3:+78205667 MS.gene029154:CDS
TTAAGAAGTTCCTAGCTGGA+AGG 0.562288 1.3:-78206371 None:intergenic
TTCCCTGATTCATAACCCAC+GGG 0.562661 1.3:+78206041 MS.gene029154:CDS
CTCCCAATGTAACAGTCTCA+AGG 0.565490 1.3:-78205792 None:intergenic
ATGGAAAGTCCTGAAGAAGA+AGG 0.565827 1.3:-78206435 None:intergenic
CTATATTGACCCTTCCAGCT+AGG 0.565963 1.3:+78206361 MS.gene029154:CDS
AATGGAGAGAGATTCTAAAA+GGG 0.567636 1.3:+78205399 None:intergenic
ATTGGGTACATGGTTGACAC+TGG 0.572469 1.3:-78205600 None:intergenic
GAGAATGCAGGGTGTCATGA+AGG 0.574020 1.3:+78205712 MS.gene029154:CDS
ATAGGAAACATCCAGCAAGA+AGG 0.574037 1.3:+78206459 MS.gene029154:CDS
AGCCCGTGGGTTATGAATCA+GGG 0.574204 1.3:-78206043 None:intergenic
GTCGGGGCACTGAATCATCT+GGG 0.576511 1.3:+78205971 MS.gene029154:CDS
TTAATTCCAGTGGATAGTGT+GGG 0.577939 1.3:+78206390 MS.gene029154:CDS
AAAGTTCCCACACTATCCAC+TGG 0.580370 1.3:-78206396 None:intergenic
ATTCTCCACACGGCTACATA+CGG 0.584742 1.3:-78205695 None:intergenic
AATGCATTGTAAGCCGGCGT+AGG 0.585492 1.3:-78206204 None:intergenic
AGAAGGGATTGAAATTTCAG+TGG 0.588453 1.3:+78206476 MS.gene029154:CDS
TGATTTAAACGGGTTTGTGA+CGG 0.594090 1.3:+78206299 MS.gene029154:CDS
TGGACGAGAATCGGTGCCTG+TGG 0.598034 1.3:+78206005 MS.gene029154:CDS
AAAGGGTCACCGCCGTTGTG+CGG 0.600828 1.3:+78205416 MS.gene029154:CDS
GGCGATTCGCCGCACAACGG+CGG 0.601835 1.3:-78205425 None:intergenic
GAAACGTGGCTATCGGGTGT+GGG 0.602041 1.3:+78205827 MS.gene029154:CDS
GTATGTTTGTTGGAGCAGCT+GGG 0.602077 1.3:+78205863 MS.gene029154:CDS
TCCCAATGTAACAGTCTCAA+GGG 0.603717 1.3:-78205791 None:intergenic
TGTTTCATACCCGACGCTAC+CGG 0.608322 1.3:-78205446 None:intergenic
TAATTGGCCTACAAAAGACA+TGG 0.608647 1.3:-78205908 None:intergenic
TAGGAACTTCTTAATTCCAG+TGG 0.615344 1.3:+78206380 MS.gene029154:CDS
ATGTTATCACCAATCCGACC+CGG 0.616285 1.3:+78205621 MS.gene029154:CDS
CCCCATAAGAAACCTCATAA+CGG 0.617736 1.3:-78205741 None:intergenic
TGAAACAGAGGAGTTCGGGT+CGG 0.622350 1.3:+78205462 MS.gene029154:CDS
TAAGAAGTTCCTAGCTGGAA+GGG 0.625100 1.3:-78206370 None:intergenic
AGAATGCAGGGTGTCATGAA+GGG 0.627661 1.3:+78205713 MS.gene029154:CDS
CTGCTCCAACAAACATACCC+TGG 0.630612 1.3:-78205858 None:intergenic
AGTTATTGTTTAGTGAGTCG+GGG 0.632837 1.3:+78205955 MS.gene029154:CDS
GACACCCTGCATTCTCCACA+CGG 0.638693 1.3:-78205705 None:intergenic
ACACCGGCACTGCCGTGACG+AGG 0.644153 1.3:+78206178 MS.gene029154:CDS
GGACGAGAATCGGTGCCTGT+GGG 0.648473 1.3:+78206006 MS.gene029154:CDS
CGGCGTAGGTAACCTCGTCA+CGG 0.668982 1.3:-78206190 None:intergenic
CAATTAGGTGGTCAGACTGG+CGG 0.669034 1.3:+78205925 MS.gene029154:CDS
AGGAACTGTGATCCGAAACG+TGG 0.669373 1.3:+78205813 MS.gene029154:CDS
GGGTGTGGGCATAGGAACCA+GGG 0.673291 1.3:+78205841 MS.gene029154:CDS
CTCCACACGGCTACATACGG+TGG 0.673617 1.3:-78205692 None:intergenic
TAGCGTCGGGTATGAAACAG+AGG 0.673926 1.3:+78205450 MS.gene029154:CDS
ATGCAGGGTGTCATGAAGGG+AGG 0.676996 1.3:+78205716 MS.gene029154:CDS
TTCCACCGTATGTAGCCGTG+TGG 0.688346 1.3:+78205690 MS.gene029154:CDS
AATTGGCCTACAAAAGACAT+GGG 0.692119 1.3:-78205907 None:intergenic
GTAGCCGTGTGGAGAATGCA+GGG 0.695428 1.3:+78205701 MS.gene029154:CDS
CGTGACGAGGTTACCTACGC+CGG 0.710425 1.3:+78206191 MS.gene029154:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATAATAATCGTACTATAT+AGG + chr1.3:78206670-78206689 MS.gene029154:intron 20.0%
!!! AACCATATCATTTTATTTCT+CGG + chr1.3:78206332-78206351 MS.gene029154:CDS 20.0%
! ACACATGTTATGATTTAAAC+GGG + chr1.3:78206289-78206308 MS.gene029154:CDS 25.0%
! ATCATAACATGTGTCAAAAA+TGG - chr1.3:78206283-78206302 None:intergenic 25.0%
! ATCGTACTATATAGGATAAA+TGG + chr1.3:78206678-78206697 MS.gene029154:intron 25.0%
! GACACATGTTATGATTTAAA+CGG + chr1.3:78206288-78206307 MS.gene029154:CDS 25.0%
! GAGAAATAAAATGATATGGT+TGG - chr1.3:78206333-78206352 None:intergenic 25.0%
! TTAGTTATTGTTTAGTGAGT+CGG + chr1.3:78205953-78205972 MS.gene029154:CDS 25.0%
!! TTTTTATTATATCGGGCTTT+CGG + chr1.3:78206071-78206090 MS.gene029154:CDS 25.0%
!!! ACCATATCATTTTATTTCTC+GGG + chr1.3:78206333-78206352 MS.gene029154:CDS 25.0%
!!! GTTTTTCGGTTAAATGAATT+GGG + chr1.3:78206135-78206154 MS.gene029154:CDS 25.0%
!!! TGTTTTTCGGTTAAATGAAT+TGG + chr1.3:78206134-78206153 MS.gene029154:CDS 25.0%
ACCCGAGAAATAAAATGATA+TGG - chr1.3:78206337-78206356 None:intergenic 30.0%
AGCCCGATATAATAAAAACT+CGG - chr1.3:78206069-78206088 None:intergenic 30.0%
CACATGACTTAACATACATT+GGG - chr1.3:78206531-78206550 None:intergenic 30.0%
TAGTTATTGTTTAGTGAGTC+GGG + chr1.3:78205954-78205973 MS.gene029154:CDS 30.0%
TATTTCGTAAGAATAGGAGT+TGG + chr1.3:78205520-78205539 MS.gene029154:CDS 30.0%
TCACATGACTTAACATACAT+TGG - chr1.3:78206532-78206551 None:intergenic 30.0%
! CTATATCGGAAGATGTTTTT+CGG + chr1.3:78206121-78206140 MS.gene029154:CDS 30.0%
! CTCCGAGTTTTTATTATATC+GGG + chr1.3:78206064-78206083 MS.gene029154:CDS 30.0%
! GCTCCGAGTTTTTATTATAT+CGG + chr1.3:78206063-78206082 MS.gene029154:CDS 30.0%
! TTTTATTATATCGGGCTTTC+GGG + chr1.3:78206072-78206091 MS.gene029154:CDS 30.0%
!! ATATCATTTTATTTCTCGGG+TGG + chr1.3:78206336-78206355 MS.gene029154:CDS 30.0%
!! CTTGACATATATTAGCTTTG+AGG - chr1.3:78206590-78206609 None:intergenic 30.0%
!! TATCATTTTATTTCTCGGGT+GGG + chr1.3:78206337-78206356 MS.gene029154:CDS 30.0%
!!! ATAACCACGTATTGGTTTTT+TGG - chr1.3:78205553-78205572 None:intergenic 30.0%
AAATTTCAATCCCTTCTTGC+TGG - chr1.3:78206473-78206492 None:intergenic 35.0%
AGAAGGGATTGAAATTTCAG+TGG + chr1.3:78206476-78206495 MS.gene029154:CDS 35.0%
AGTTATTGTTTAGTGAGTCG+GGG + chr1.3:78205955-78205974 MS.gene029154:CDS 35.0%
CGAAAAACATCTTCCGATAT+AGG - chr1.3:78206123-78206142 None:intergenic 35.0%
GTATGTTAAGTCATGTGAGT+TGG + chr1.3:78206534-78206553 MS.gene029154:intron 35.0%
TAGGAACTTCTTAATTCCAG+TGG + chr1.3:78206380-78206399 MS.gene029154:CDS 35.0%
TTAATTCCAGTGGATAGTGT+GGG + chr1.3:78206390-78206409 MS.gene029154:CDS 35.0%
! AATGGATACTCCTGATGTTT+TGG - chr1.3:78206265-78206284 None:intergenic 35.0%
! AATTGGCCTACAAAAGACAT+GGG - chr1.3:78205910-78205929 None:intergenic 35.0%
! ATGGATACTCCTGATGTTTT+GGG - chr1.3:78206264-78206283 None:intergenic 35.0%
! ATGTCTTTTGTAGGCCAATT+AGG + chr1.3:78205910-78205929 MS.gene029154:CDS 35.0%
! CCAATACGTGGTTATTGATT+CGG + chr1.3:78205558-78205577 MS.gene029154:CDS 35.0%
! TAATTGGCCTACAAAAGACA+TGG - chr1.3:78205911-78205930 None:intergenic 35.0%
! TGATTTAAACGGGTTTGTGA+CGG + chr1.3:78206299-78206318 MS.gene029154:CDS 35.0%
!! CAATACGTGGTTATTGATTC+GGG + chr1.3:78205559-78205578 MS.gene029154:CDS 35.0%
!! GGAGAGTATTTCGTAAGAAT+AGG + chr1.3:78205514-78205533 MS.gene029154:CDS 35.0%
ACAAACCTACCCAAAACATC+AGG + chr1.3:78206252-78206271 MS.gene029154:CDS 40.0%
ATAGGAAACATCCAGCAAGA+AGG + chr1.3:78206459-78206478 MS.gene029154:CDS 40.0%
ATGAGGTTTCTTATGGGGAT+GGG + chr1.3:78205746-78205765 MS.gene029154:CDS 40.0%
ATGGAAAGTCCTGAAGAAGA+AGG - chr1.3:78206438-78206457 None:intergenic 40.0%
ATTCGGGCAGTGACATTATT+TGG + chr1.3:78205575-78205594 MS.gene029154:CDS 40.0%
ATTTCAGTGGATGGAGCTAA+TGG + chr1.3:78206489-78206508 MS.gene029154:CDS 40.0%
CCCCATAAGAAACCTCATAA+CGG - chr1.3:78205744-78205763 None:intergenic 40.0%
CCGAATCAATAACCACGTAT+TGG - chr1.3:78205561-78205580 None:intergenic 40.0%
CCGTTATGAGGTTTCTTATG+GGG + chr1.3:78205741-78205760 MS.gene029154:CDS 40.0%
CGGTTAAATGAATTGGGTGA+GGG + chr1.3:78206141-78206160 MS.gene029154:CDS 40.0%
CTTAATTCCAGTGGATAGTG+TGG + chr1.3:78206389-78206408 MS.gene029154:CDS 40.0%
GCCGTTATGAGGTTTCTTAT+GGG + chr1.3:78205740-78205759 MS.gene029154:CDS 40.0%
GCTAGAATTTGGACGAGAAT+CGG + chr1.3:78205996-78206015 MS.gene029154:CDS 40.0%
GGAATTAAGAAGTTCCTAGC+TGG - chr1.3:78206378-78206397 None:intergenic 40.0%
GGGATTGAAATTTCAGTGGA+TGG + chr1.3:78206480-78206499 MS.gene029154:CDS 40.0%
TAAATGAATTGGGTGAGGGA+GGG + chr1.3:78206145-78206164 MS.gene029154:CDS 40.0%
TAAGAAGTTCCTAGCTGGAA+GGG - chr1.3:78206373-78206392 None:intergenic 40.0%
TAGGAAACATCCAGCAAGAA+GGG + chr1.3:78206460-78206479 MS.gene029154:CDS 40.0%
TATGAGGTTTCTTATGGGGA+TGG + chr1.3:78205745-78205764 MS.gene029154:CDS 40.0%
TCCACCAAAAAACCAATACG+TGG + chr1.3:78205546-78205565 MS.gene029154:CDS 40.0%
TCCCAATGTAACAGTCTCAA+GGG - chr1.3:78205794-78205813 None:intergenic 40.0%
TCGGTTAAATGAATTGGGTG+AGG + chr1.3:78206140-78206159 MS.gene029154:CDS 40.0%
TCTTCAGGACTTTCCATCAT+AGG + chr1.3:78206441-78206460 MS.gene029154:CDS 40.0%
TGCCGTTATGAGGTTTCTTA+TGG + chr1.3:78205739-78205758 MS.gene029154:CDS 40.0%
TGGTGATAACATTGGGTACA+TGG - chr1.3:78205613-78205632 None:intergenic 40.0%
TTAAATGAATTGGGTGAGGG+AGG + chr1.3:78206144-78206163 MS.gene029154:CDS 40.0%
TTAAGAAGTTCCTAGCTGGA+AGG - chr1.3:78206374-78206393 None:intergenic 40.0%
TTCGGGCAGTGACATTATTT+GGG + chr1.3:78205576-78205595 MS.gene029154:CDS 40.0%
TTGCTGGATGTTTCCTATGA+TGG - chr1.3:78206457-78206476 None:intergenic 40.0%
TTTCAGTGGATGGAGCTAAT+GGG + chr1.3:78206490-78206509 MS.gene029154:CDS 40.0%
TTTCCCTGATTCATAACCCA+CGG + chr1.3:78206040-78206059 MS.gene029154:CDS 40.0%
! GATGGAGCTAATGGGTATAT+GGG + chr1.3:78206498-78206517 MS.gene029154:CDS 40.0%
! GCTAATGGGTATATGGGATT+TGG + chr1.3:78206504-78206523 MS.gene029154:CDS 40.0%
! TCTTTTGTAGGCCAATTAGG+TGG + chr1.3:78205913-78205932 MS.gene029154:CDS 40.0%
!! ATACTCCTGATGTTTTGGGT+AGG - chr1.3:78206260-78206279 None:intergenic 40.0%
!! GTCGGATTGGTGATAACATT+GGG - chr1.3:78205620-78205639 None:intergenic 40.0%
!! GTTGGATTTTAGAAGCTCGT+CGG + chr1.3:78206552-78206571 MS.gene029154:intron 40.0%
!! TTGGATTTTAGAAGCTCGTC+GGG + chr1.3:78206553-78206572 MS.gene029154:intron 40.0%
!!! ACCACGTATTGGTTTTTTGG+TGG - chr1.3:78205550-78205569 None:intergenic 40.0%
AAAGTTCCCACACTATCCAC+TGG - chr1.3:78206399-78206418 None:intergenic 45.0%
AAATGAATTGGGTGAGGGAG+GGG + chr1.3:78206146-78206165 MS.gene029154:CDS 45.0%
AATAAAAACTCGGAGCCCGT+GGG - chr1.3:78206059-78206078 None:intergenic 45.0%
AGGAACCAGGGTATGTTTGT+TGG + chr1.3:78205853-78205872 MS.gene029154:CDS 45.0%
ATGTTATCACCAATCCGACC+CGG + chr1.3:78205621-78205640 MS.gene029154:CDS 45.0%
ATTCTCCACACGGCTACATA+CGG - chr1.3:78205698-78205717 None:intergenic 45.0%
ATTGGGTACATGGTTGACAC+TGG - chr1.3:78205603-78205622 None:intergenic 45.0%
CATAAGATGAAGAATCCCCC+GGG - chr1.3:78205654-78205673 None:intergenic 45.0%
CTAGCTGGAAGGGTCAATAT+AGG - chr1.3:78206363-78206382 None:intergenic 45.0%
CTATATTGACCCTTCCAGCT+AGG + chr1.3:78206361-78206380 MS.gene029154:CDS 45.0%
CTCCCAATGTAACAGTCTCA+AGG - chr1.3:78205795-78205814 None:intergenic 45.0%
CTTGAGACTGTTACATTGGG+AGG + chr1.3:78205793-78205812 MS.gene029154:CDS 45.0%
GCATAAGATGAAGAATCCCC+CGG - chr1.3:78205655-78205674 None:intergenic 45.0%
GCATTTGCTCCTTCTTCTTC+AGG + chr1.3:78206426-78206445 MS.gene029154:CDS 45.0%
GCCCTTGAGACTGTTACATT+GGG + chr1.3:78205790-78205809 MS.gene029154:CDS 45.0%
GGCAAGTGTCCCTTTAGTAT+AGG - chr1.3:78205773-78205792 None:intergenic 45.0%
GGGATGGGTCCTATACTAAA+GGG + chr1.3:78205761-78205780 MS.gene029154:CDS 45.0%
GGGGATTCTTCATCTTATGC+TGG + chr1.3:78205655-78205674 MS.gene029154:CDS 45.0%
GGGTATGAAACAGAGGAGTT+CGG + chr1.3:78205457-78205476 MS.gene029154:CDS 45.0%
GGTATGAAACAGAGGAGTTC+GGG + chr1.3:78205458-78205477 MS.gene029154:CDS 45.0%
TAATAAAAACTCGGAGCCCG+TGG - chr1.3:78206060-78206079 None:intergenic 45.0%
TCATCTGGGTCGCTAGAATT+TGG + chr1.3:78205985-78206004 MS.gene029154:CDS 45.0%
TCCCGAAATGCATTGTAAGC+CGG - chr1.3:78206213-78206232 None:intergenic 45.0%
TCTTATGCTGGTGTGTCTTG+CGG + chr1.3:78205667-78205686 MS.gene029154:CDS 45.0%
TGCCCTTGAGACTGTTACAT+TGG + chr1.3:78205789-78205808 MS.gene029154:CDS 45.0%
TTCCCTGATTCATAACCCAC+GGG + chr1.3:78206041-78206060 MS.gene029154:CDS 45.0%
! AGAATGCAGGGTGTCATGAA+GGG + chr1.3:78205713-78205732 MS.gene029154:CDS 45.0%
! GGATGGAGCTAATGGGTATA+TGG + chr1.3:78206497-78206516 MS.gene029154:CDS 45.0%
! GTATGTTTGTTGGAGCAGCT+GGG + chr1.3:78205863-78205882 MS.gene029154:CDS 45.0%
! TAAACGGGTTTGTGACGGTT+CGG + chr1.3:78206304-78206323 MS.gene029154:CDS 45.0%
!! GGTCGGATTGGTGATAACAT+TGG - chr1.3:78205621-78205640 None:intergenic 45.0%
!! TGGATTTTAGAAGCTCGTCG+GGG + chr1.3:78206554-78206573 MS.gene029154:intron 45.0%
AATCCCCCGGGTTAAAAACC+GGG - chr1.3:78205642-78205661 None:intergenic 50.0%
AATGCATTGTAAGCCGGCGT+AGG - chr1.3:78206207-78206226 None:intergenic 50.0%
AGGAACTGTGATCCGAAACG+TGG + chr1.3:78205813-78205832 MS.gene029154:CDS 50.0%
CAATTAGGTGGTCAGACTGG+CGG + chr1.3:78205925-78205944 MS.gene029154:CDS 50.0%
CTGCTCCAACAAACATACCC+TGG - chr1.3:78205861-78205880 None:intergenic 50.0%
GAATCCCCCGGGTTAAAAAC+CGG - chr1.3:78205643-78205662 None:intergenic 50.0%
GGGGATGGGTCCTATACTAA+AGG + chr1.3:78205760-78205779 MS.gene029154:CDS 50.0%
GGGGTTGAGGGTTCCTATAT+CGG + chr1.3:78206107-78206126 MS.gene029154:CDS 50.0%
GGTTAAAAACCGGGTCGGAT+TGG - chr1.3:78205633-78205652 None:intergenic 50.0%
GGTTGTTGGGTCTTGGAAGT+GGG + chr1.3:78205884-78205903 MS.gene029154:CDS 50.0%
GTGATCCGAAACGTGGCTAT+CGG + chr1.3:78205820-78205839 MS.gene029154:CDS 50.0%
TGAAACAGAGGAGTTCGGGT+CGG + chr1.3:78205462-78205481 MS.gene029154:CDS 50.0%
TGATCCGAAACGTGGCTATC+GGG + chr1.3:78205821-78205840 MS.gene029154:CDS 50.0%
TGTTTCATACCCGACGCTAC+CGG - chr1.3:78205449-78205468 None:intergenic 50.0%
! AAACGGGTTTGTGACGGTTC+GGG + chr1.3:78206305-78206324 MS.gene029154:CDS 50.0%
! AGCCCGTGGGTTATGAATCA+GGG - chr1.3:78206046-78206065 None:intergenic 50.0%
! AGTGGGCCCATGTCTTTTGT+AGG + chr1.3:78205901-78205920 MS.gene029154:CDS 50.0%
! ATCCGACCCGGTTTTTAACC+CGG + chr1.3:78205633-78205652 MS.gene029154:CDS 50.0%
! GAGAATGCAGGGTGTCATGA+AGG + chr1.3:78205712-78205731 MS.gene029154:CDS 50.0%
! GCCGGCTTACAATGCATTTC+GGG + chr1.3:78206209-78206228 MS.gene029154:CDS 50.0%
! GGTATGTTTGTTGGAGCAGC+TGG + chr1.3:78205862-78205881 MS.gene029154:CDS 50.0%
! TAGCGTCGGGTATGAAACAG+AGG + chr1.3:78205450-78205469 MS.gene029154:CDS 50.0%
! TATATCGGGCTTTCGGGTCT+TGG + chr1.3:78206078-78206097 MS.gene029154:CDS 50.0%
!! CGCCGGCTTACAATGCATTT+CGG + chr1.3:78206208-78206227 MS.gene029154:CDS 50.0%
CACACCCGATAGCCACGTTT+CGG - chr1.3:78205828-78205847 None:intergenic 55.0%
CGCCAGTCTGACCACCTAAT+TGG - chr1.3:78205927-78205946 None:intergenic 55.0%
GAAACAGAGGAGTTCGGGTC+GGG + chr1.3:78205463-78205482 MS.gene029154:CDS 55.0%
GAAACGTGGCTATCGGGTGT+GGG + chr1.3:78205827-78205846 MS.gene029154:CDS 55.0%
GACACCCTGCATTCTCCACA+CGG - chr1.3:78205708-78205727 None:intergenic 55.0%
GGCCAATTAGGTGGTCAGAC+TGG + chr1.3:78205922-78205941 MS.gene029154:CDS 55.0%
GGGTTGTTGGGTCTTGGAAG+TGG + chr1.3:78205883-78205902 MS.gene029154:CDS 55.0%
GTAGCCGTGTGGAGAATGCA+GGG + chr1.3:78205701-78205720 MS.gene029154:CDS 55.0%
GTTGGAGCAGCTGGGTTGTT+GGG + chr1.3:78205871-78205890 MS.gene029154:CDS 55.0%
TCGGGTATGGAGCAAGGAAG+TGG + chr1.3:78205493-78205512 MS.gene029154:CDS 55.0%
TCTTGGAGTTGGGGGGTTGA+GGG + chr1.3:78206095-78206114 MS.gene029154:CDS 55.0%
TGTAGCCGTGTGGAGAATGC+AGG + chr1.3:78205700-78205719 MS.gene029154:CDS 55.0%
TGTTGGAGCAGCTGGGTTGT+TGG + chr1.3:78205870-78205889 MS.gene029154:CDS 55.0%
TTCCACCGTATGTAGCCGTG+TGG + chr1.3:78205690-78205709 MS.gene029154:CDS 55.0%
! ATGCAGGGTGTCATGAAGGG+AGG + chr1.3:78205716-78205735 MS.gene029154:CDS 55.0%
! CTTTCGGGTCTTGGAGTTGG+GGG + chr1.3:78206087-78206106 MS.gene029154:CDS 55.0%
! GAGCCCGTGGGTTATGAATC+AGG - chr1.3:78206047-78206066 None:intergenic 55.0%
! GCTTTCGGGTCTTGGAGTTG+GGG + chr1.3:78206086-78206105 MS.gene029154:CDS 55.0%
! GGCTTTCGGGTCTTGGAGTT+GGG + chr1.3:78206085-78206104 MS.gene029154:CDS 55.0%
! GTGGTTTCGGGTATGGAGCA+AGG + chr1.3:78205487-78205506 MS.gene029154:CDS 55.0%
! TCCGACCCGGTTTTTAACCC+GGG + chr1.3:78205634-78205653 MS.gene029154:CDS 55.0%
! TTTCGGGTCTTGGAGTTGGG+GGG + chr1.3:78206088-78206107 MS.gene029154:CDS 55.0%
!! AGTCGGGGCACTGAATCATC+TGG + chr1.3:78205970-78205989 MS.gene029154:CDS 55.0%
!! GTCGGGGCACTGAATCATCT+GGG + chr1.3:78205971-78205990 MS.gene029154:CDS 55.0%
!! TGAAGGGAGGTGCCGTTATG+AGG + chr1.3:78205729-78205748 MS.gene029154:CDS 55.0%
AAAGGGTCACCGCCGTTGTG+CGG + chr1.3:78205416-78205435 MS.gene029154:CDS 60.0%
CCCCGGGTTAAAAACCGGGT+CGG - chr1.3:78205638-78205657 None:intergenic 60.0%
CGAAACGTGGCTATCGGGTG+TGG + chr1.3:78205826-78205845 MS.gene029154:CDS 60.0%
CGGCGTAGGTAACCTCGTCA+CGG - chr1.3:78206193-78206212 None:intergenic 60.0%
CGTGACGAGGTTACCTACGC+CGG + chr1.3:78206191-78206210 MS.gene029154:CDS 60.0%
CTCCACACGGCTACATACGG+TGG - chr1.3:78205695-78205714 None:intergenic 60.0%
GCAGCTGGGTTGTTGGGTCT+TGG + chr1.3:78205877-78205896 MS.gene029154:CDS 60.0%
GGGTGTGGGCATAGGAACCA+GGG + chr1.3:78205841-78205860 MS.gene029154:CDS 60.0%
GTCTTGGAGTTGGGGGGTTG+AGG + chr1.3:78206094-78206113 MS.gene029154:CDS 60.0%
GTTCGGGTCGGGTGTGGTTT+CGG + chr1.3:78205474-78205493 MS.gene029154:CDS 60.0%
TAACCTCGTCACGGCAGTGC+CGG - chr1.3:78206184-78206203 None:intergenic 60.0%
TGAATTGGGTGAGGGAGGGG+TGG + chr1.3:78206149-78206168 MS.gene029154:CDS 60.0%
TGGCTATCGGGTGTGGGCAT+AGG + chr1.3:78205833-78205852 MS.gene029154:CDS 60.0%
TTCGGGTCGGGTGTGGTTTC+GGG + chr1.3:78205475-78205494 MS.gene029154:CDS 60.0%
! CCGACCCGGTTTTTAACCCG+GGG + chr1.3:78205635-78205654 MS.gene029154:CDS 60.0%
! CGACCCGGTTTTTAACCCGG+GGG + chr1.3:78205636-78205655 MS.gene029154:CDS 60.0%
! GAAACCCACGAAGCACCCAC+AGG - chr1.3:78206024-78206043 None:intergenic 60.0%
! GGACGAGAATCGGTGCCTGT+GGG + chr1.3:78206006-78206025 MS.gene029154:CDS 60.0%
! GGGCTTTCGGGTCTTGGAGT+TGG + chr1.3:78206084-78206103 MS.gene029154:CDS 60.0%
! GTCGGGTGTGGTTTCGGGTA+TGG + chr1.3:78205480-78205499 MS.gene029154:CDS 60.0%
! TGGACGAGAATCGGTGCCTG+TGG + chr1.3:78206005-78206024 MS.gene029154:CDS 60.0%
ACCGGCGATTCGCCGCACAA+CGG - chr1.3:78205431-78205450 None:intergenic 65.0%
AGAGGAGTTCGGGTCGGGTG+TGG + chr1.3:78205468-78205487 MS.gene029154:CDS 65.0%
CGGGTGTGGGCATAGGAACC+AGG + chr1.3:78205840-78205859 MS.gene029154:CDS 65.0%
GGAGGGGTGGTCATGGACAC+CGG + chr1.3:78206162-78206181 MS.gene029154:CDS 65.0%
GGTGCCTGTGGGTGCTTCGT+GGG + chr1.3:78206017-78206036 MS.gene029154:CDS 65.0%
ACACCGGCACTGCCGTGACG+AGG + chr1.3:78206178-78206197 MS.gene029154:CDS 70.0%
CGGCGAATCGCCGGTAGCGT+CGG + chr1.3:78205436-78205455 MS.gene029154:CDS 70.0%
CGGTGCCTGTGGGTGCTTCG+TGG + chr1.3:78206016-78206035 MS.gene029154:CDS 70.0%
GCCGTTGTGCGGCGAATCGC+CGG + chr1.3:78205427-78205446 MS.gene029154:CDS 70.0%
GGCGAATCGCCGGTAGCGTC+GGG + chr1.3:78205437-78205456 MS.gene029154:CDS 70.0%
GGCGATTCGCCGCACAACGG+CGG - chr1.3:78205428-78205447 None:intergenic 70.0%
GGGTGAGGGAGGGGTGGTCA+TGG + chr1.3:78206155-78206174 MS.gene029154:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 78205400 78206712 78205400 ID=MS.gene029154
chr1.3 mRNA 78205400 78206712 78205400 ID=MS.gene029154.t1;Parent=MS.gene029154
chr1.3 exon 78205400 78206533 78205400 ID=MS.gene029154.t1.exon1;Parent=MS.gene029154.t1
chr1.3 CDS 78205400 78206533 78205400 ID=cds.MS.gene029154.t1;Parent=MS.gene029154.t1
chr1.3 exon 78206692 78206712 78206692 ID=MS.gene029154.t1.exon2;Parent=MS.gene029154.t1
chr1.3 CDS 78206692 78206712 78206692 ID=cds.MS.gene029154.t1;Parent=MS.gene029154.t1
Gene Sequence

>MS.gene029154

ATGGAGAGAGATTCTAAAAGGGTCACCGCCGTTGTGCGGCGAATCGCCGGTAGCGTCGGGTATGAAACAGAGGAGTTCGGGTCGGGTGTGGTTTCGGGTATGGAGCAAGGAAGTGGAGAGTATTTCGTAAGAATAGGAGTTGGAAGTCCACCAAAAAACCAATACGTGGTTATTGATTCGGGCAGTGACATTATTTGGGTCCAGTGTCAACCATGTACCCAATGTTATCACCAATCCGACCCGGTTTTTAACCCGGGGGATTCTTCATCTTATGCTGGTGTGTCTTGCGGTTCCACCGTATGTAGCCGTGTGGAGAATGCAGGGTGTCATGAAGGGAGGTGCCGTTATGAGGTTTCTTATGGGGATGGGTCCTATACTAAAGGGACACTTGCCCTTGAGACTGTTACATTGGGAGGAACTGTGATCCGAAACGTGGCTATCGGGTGTGGGCATAGGAACCAGGGTATGTTTGTTGGAGCAGCTGGGTTGTTGGGTCTTGGAAGTGGGCCCATGTCTTTTGTAGGCCAATTAGGTGGTCAGACTGGCGGTACATTTAGTTATTGTTTAGTGAGTCGGGGCACTGAATCATCTGGGTCGCTAGAATTTGGACGAGAATCGGTGCCTGTGGGTGCTTCGTGGGTTTCCCTGATTCATAACCCACGGGCTCCGAGTTTTTATTATATCGGGCTTTCGGGTCTTGGAGTTGGGGGGTTGAGGGTTCCTATATCGGAAGATGTTTTTCGGTTAAATGAATTGGGTGAGGGAGGGGTGGTCATGGACACCGGCACTGCCGTGACGAGGTTACCTACGCCGGCTTACAATGCATTTCGGGATGCATTTATTGCTCAAACGACAAACCTACCCAAAACATCAGGAGTATCCATTTTTGACACATGTTATGATTTAAACGGGTTTGTGACGGTTCGGGTTCCAACCATATCATTTTATTTCTCGGGTGGGCCTATATTGACCCTTCCAGCTAGGAACTTCTTAATTCCAGTGGATAGTGTGGGAACTTTTTGCTTTGCATTTGCTCCTTCTTCTTCAGGACTTTCCATCATAGGAAACATCCAGCAAGAAGGGATTGAAATTTCAGTGGATGGAGCTAATGGGTATATGGGATTTGGACCCAATGTATGTTAAGTCATGTGAGTTGGATTTTAGAAGCTCGTCGGGGTTAAAGCAAACCTCAAAGCTAATATATGTCAAGTGTTATTGTAAGCGTGTGTATATTATCATCGTTCTAAGTTTTGTTAGTGTTAGTAATGTAACATAATAATCGTACTATATAGGATAAATGGAATAATAATTAA
Protein sequence

>MS.gene029154.t1

MERDSKRVTAVVRRIAGSVGYETEEFGSGVVSGMEQGSGEYFVRIGVGSPPKNQYVVIDSGSDIIWVQCQPCTQCYHQSDPVFNPGDSSSYAGVSCGSTVCSRVENAGCHEGRCRYEVSYGDGSYTKGTLALETVTLGGTVIRNVAIGCGHRNQGMFVGAAGLLGLGSGPMSFVGQLGGQTGGTFSYCLVSRGTESSGSLEFGRESVPVGASWVSLIHNPRAPSFYYIGLSGLGVGGLRVPISEDVFRLNELGEGGVVMDTGTAVTRLPTPAYNAFRDAFIAQTTNLPKTSGVSIFDTCYDLNGFVTVRVPTISFYFSGGPILTLPARNFLIPVDSVGTFCFAFAPSSSGLSIIGNIQQEGIEISVDGANGYMGFGPNDKWNNN