AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029155

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029155.t1 MTR_1g115210 97.090 378 11 0 1 378 107 484 0.0 749
MS.gene029155.t1 MTR_1g039270 71.948 385 101 2 1 378 83 467 0.0 555
MS.gene029155.t1 MTR_1g111350 50.789 380 177 4 1 378 94 465 2.94e-131 384
MS.gene029155.t1 MTR_7g117430 49.608 383 187 5 1 378 101 482 6.17e-122 361
MS.gene029155.t1 MTR_6g085010 44.615 390 196 5 1 376 104 487 3.60e-109 328
MS.gene029155.t1 MTR_8g103880 38.547 358 211 6 20 373 96 448 2.23e-89 277
MS.gene029155.t1 MTR_3g097150 38.381 383 212 10 6 377 74 443 1.83e-82 259
MS.gene029155.t1 MTR_4g007740 36.802 394 217 10 4 376 91 473 1.74e-72 234
MS.gene029155.t1 MTR_3g053710 39.106 358 195 10 37 378 114 464 1.08e-71 231
MS.gene029155.t1 MTR_3g046300 36.000 375 203 7 32 377 89 455 1.41e-69 226
MS.gene029155.t1 MTR_5g044770 36.857 350 201 11 39 377 85 425 1.10e-68 223
MS.gene029155.t1 MTR_2g028190 33.251 406 225 14 3 377 58 448 8.59e-67 218
MS.gene029155.t1 MTR_3g053980 39.944 358 196 8 32 378 134 483 1.40e-66 219
MS.gene029155.t1 MTR_8g096990 33.943 383 234 11 6 377 52 426 4.98e-66 216
MS.gene029155.t1 MTR_5g080890 35.457 361 194 11 39 377 85 428 1.83e-64 212
MS.gene029155.t1 MTR_5g091130 33.661 407 239 10 1 377 145 550 2.15e-64 214
MS.gene029155.t1 MTR_5g080960 34.439 392 218 11 8 377 54 428 1.10e-63 209
MS.gene029155.t1 MTR_8g038280 34.463 354 209 11 39 377 85 430 5.68e-61 202
MS.gene029155.t1 MTR_2g059460 33.511 376 215 12 10 367 33 391 1.70e-57 192
MS.gene029155.t1 MTR_6g090290 34.293 382 231 9 8 375 54 429 3.57e-57 192
MS.gene029155.t1 MTR_2g059490 34.758 351 209 12 40 375 58 403 2.50e-55 188
MS.gene029155.t1 MTR_0036s0110 29.851 402 230 15 3 377 61 437 3.99e-54 185
MS.gene029155.t1 MTR_2g067830 33.248 391 233 16 6 377 20 401 6.65e-54 183
MS.gene029155.t1 MTR_5g038360 32.225 391 241 13 1 377 51 431 1.30e-53 183
MS.gene029155.t1 MTR_6g088760 32.425 367 220 12 1 347 46 404 5.09e-53 184
MS.gene029155.t1 MTR_3g028120 33.989 356 211 12 38 377 86 433 5.92e-53 182
MS.gene029155.t1 MTR_8g038310 32.041 387 226 12 2 377 48 408 1.13e-52 180
MS.gene029155.t1 MTR_0036s0070 30.809 383 232 12 10 377 57 421 2.11e-52 180
MS.gene029155.t1 MTR_4g109760 33.807 352 206 11 40 377 55 393 1.59e-51 177
MS.gene029155.t1 MTR_5g008150 32.283 381 235 11 12 377 35 407 1.56e-50 174
MS.gene029155.t1 MTR_5g008070 33.521 355 211 10 37 377 78 421 3.58e-50 174
MS.gene029155.t1 MTR_5g008110 32.861 353 215 11 39 377 66 410 1.33e-49 172
MS.gene029155.t1 MTR_8g038250 31.234 381 227 9 8 377 54 410 4.94e-49 171
MS.gene029155.t1 MTR_0036s0050 30.203 394 231 12 10 378 57 431 5.62e-49 171
MS.gene029155.t1 MTR_1g037630 34.971 346 207 9 38 376 90 424 2.43e-48 169
MS.gene029155.t1 MTR_0024s0040 32.194 351 215 12 41 377 64 405 2.63e-48 169
MS.gene029155.t1 MTR_3g014290 34.971 346 207 9 38 376 78 412 4.36e-48 168
MS.gene029155.t1 MTR_2g105300 31.458 391 218 17 6 377 20 379 1.87e-47 166
MS.gene029155.t1 MTR_5g044570 31.392 395 218 18 2 377 46 406 3.74e-45 160
MS.gene029155.t1 MTR_4g045857 40.092 217 117 6 40 243 58 274 5.68e-45 157
MS.gene029155.t1 MTR_8g039540 35.652 345 207 10 38 376 94 429 2.17e-44 159
MS.gene029155.t1 MTR_2g055840 31.180 356 213 10 41 370 14 363 7.65e-43 153
MS.gene029155.t1 MTR_3g100500 32.584 356 222 9 30 376 87 433 3.56e-42 153
MS.gene029155.t1 MTR_2g070430 29.288 379 218 12 38 378 85 451 6.38e-38 142
MS.gene029155.t1 MTR_1g060750 26.031 388 233 14 7 377 21 371 9.72e-37 137
MS.gene029155.t1 MTR_7g102750 28.049 410 250 14 1 375 36 435 2.50e-33 130
MS.gene029155.t1 MTR_3g068000 29.491 373 213 17 43 376 76 437 7.13e-33 128
MS.gene029155.t1 MTR_7g102750 28.462 390 234 14 1 355 36 415 3.51e-32 126
MS.gene029155.t1 MTR_4g100990 28.000 400 218 16 40 376 74 466 7.12e-32 125
MS.gene029155.t1 MTR_7g062360 30.667 375 204 18 43 376 62 421 3.61e-31 123
MS.gene029155.t1 MTR_5g012490 26.884 398 224 16 40 376 74 465 9.21e-31 122
MS.gene029155.t1 MTR_7g105850 28.351 388 215 14 39 377 89 462 2.87e-30 121
MS.gene029155.t1 MTR_2g063110 26.067 445 251 16 1 377 71 505 7.46e-30 120
MS.gene029155.t1 MTR_2g084550 28.852 357 198 16 39 357 76 414 3.08e-29 118
MS.gene029155.t1 MTR_4g056420 28.000 350 211 15 38 357 75 413 2.08e-28 115
MS.gene029155.t1 MTR_1g061940 27.873 409 251 14 1 375 41 439 3.47e-28 115
MS.gene029155.t1 MTR_4g095270 26.836 354 230 11 38 375 78 418 5.16e-28 115
MS.gene029155.t1 MTR_3g065160 27.147 361 221 15 43 376 77 422 8.74e-28 113
MS.gene029155.t1 MTR_4g095270 26.836 354 230 11 38 375 78 418 1.19e-27 114
MS.gene029155.t1 MTR_5g016260 26.136 352 235 10 38 375 86 426 2.22e-27 114
MS.gene029155.t1 MTR_5g077850 27.222 360 226 15 43 376 84 433 2.62e-27 112
MS.gene029155.t1 MTR_5g016260 25.852 352 236 10 38 375 86 426 3.26e-27 113
MS.gene029155.t1 MTR_7g021510 25.526 380 232 13 32 375 64 428 6.96e-27 111
MS.gene029155.t1 MTR_5g008090 30.508 295 174 11 92 367 17 299 2.06e-26 107
MS.gene029155.t1 MTR_1g078240 25.995 377 234 14 32 375 61 425 1.16e-25 108
MS.gene029155.t1 MTR_7g080230 25.532 376 235 14 32 375 63 425 2.08e-25 107
MS.gene029155.t1 MTR_1g078240 28.308 325 198 13 32 331 61 375 9.09e-25 104
MS.gene029155.t1 MTR_1g078240 25.995 377 233 15 32 375 61 424 1.82e-24 104
MS.gene029155.t1 MTR_5g022880 26.667 375 204 16 41 375 113 456 1.96e-22 99.0
MS.gene029155.t1 MTR_6g084710 25.238 420 249 20 2 375 145 545 1.38e-21 96.7
MS.gene029155.t1 MTR_8g094590 24.661 369 229 15 39 377 72 421 6.22e-21 94.0
MS.gene029155.t1 MTR_6g084710 26.871 294 183 12 2 273 145 428 2.00e-20 93.2
MS.gene029155.t1 MTR_8g075010 26.359 368 214 14 41 375 101 444 2.18e-20 93.2
MS.gene029155.t1 MTR_5g077920 26.625 323 206 13 43 342 71 385 2.51e-20 92.4
MS.gene029155.t1 MTR_8g075090 27.446 368 208 20 41 375 113 454 3.82e-20 92.0
MS.gene029155.t1 MTR_8g075090 27.446 368 208 20 41 375 113 454 3.92e-20 92.4
MS.gene029155.t1 MTR_3g096930 25.067 371 220 15 39 375 83 429 5.82e-20 91.3
MS.gene029155.t1 MTR_8g094590 28.175 252 149 10 39 276 72 305 8.61e-20 89.4
MS.gene029155.t1 MTR_5g061690 26.108 406 239 16 1 375 69 444 2.32e-19 90.1
MS.gene029155.t1 MTR_8g094590 28.175 252 149 10 39 276 72 305 2.50e-19 89.4
MS.gene029155.t1 MTR_8g075090 27.586 348 193 20 41 355 113 434 2.13e-18 87.0
MS.gene029155.t1 MTR_2g022450 24.747 396 223 16 35 375 35 410 7.73e-18 85.1
MS.gene029155.t1 MTR_4g023650 25.581 387 224 19 31 376 52 415 3.36e-17 83.2
MS.gene029155.t1 MTR_1g029810 24.932 369 225 15 39 375 56 404 5.42e-17 82.4
MS.gene029155.t1 MTR_1g029810 25.203 369 224 15 39 375 56 404 5.47e-17 82.4
MS.gene029155.t1 MTR_3g006820 25.623 281 172 14 26 286 44 307 4.42e-16 79.7
MS.gene029155.t1 MTR_3g087780 24.654 361 231 11 41 375 100 445 4.56e-16 80.1
MS.gene029155.t1 MTR_4g023630 24.416 385 231 17 31 376 52 415 4.56e-16 79.7
MS.gene029155.t1 MTR_4g117090 23.342 407 223 17 40 375 49 437 5.65e-13 70.5
MS.gene029155.t1 MTR_7g080230 23.214 336 213 14 72 375 33 355 3.53e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029155.t1 AT3G20015 73.698 384 95 1 1 378 85 468 0.0 558
MS.gene029155.t1 AT3G18490 50.505 396 175 4 1 378 106 498 1.46e-132 389
MS.gene029155.t1 AT1G25510 47.837 393 186 4 1 378 93 481 4.84e-127 374
MS.gene029155.t1 AT1G01300 49.096 387 186 5 1 377 96 481 1.49e-120 358
MS.gene029155.t1 AT3G61820 47.074 393 189 6 1 375 87 478 2.46e-116 347
MS.gene029155.t1 AT5G10770 39.130 391 218 9 1 378 88 471 3.10e-85 266
MS.gene029155.t1 AT5G10760 38.120 383 223 7 1 378 89 462 1.60e-73 236
MS.gene029155.t1 AT2G03200 37.151 358 203 10 37 377 103 455 2.66e-73 235
MS.gene029155.t1 AT1G79720 35.279 394 223 7 4 375 94 477 6.00e-66 217
MS.gene029155.t1 AT5G33340 35.550 391 230 12 1 377 49 431 1.27e-65 215
MS.gene029155.t1 AT1G64830 35.219 389 227 13 2 375 45 423 5.19e-63 208
MS.gene029155.t1 AT3G25700 33.867 375 220 11 28 375 71 444 6.81e-61 203
MS.gene029155.t1 AT3G59080 32.419 401 244 9 2 377 131 529 2.49e-58 198
MS.gene029155.t1 AT2G42980 33.085 402 241 11 2 377 122 521 2.24e-57 196
MS.gene029155.t1 AT1G09750 33.247 385 236 10 4 377 71 445 1.03e-56 192
MS.gene029155.t1 AT2G28040 32.471 348 201 8 40 377 55 378 2.19e-54 184
MS.gene029155.t1 AT2G28040 32.471 348 201 8 40 377 64 387 3.23e-54 184
MS.gene029155.t1 AT3G54400 33.913 345 213 8 38 376 85 420 3.75e-54 184
MS.gene029155.t1 AT2G28010 31.347 386 224 9 1 377 35 388 7.05e-52 178
MS.gene029155.t1 AT2G28030 32.370 346 203 8 41 377 61 384 3.33e-51 176
MS.gene029155.t1 AT3G59080 31.139 395 221 8 2 377 131 493 2.85e-50 176
MS.gene029155.t1 AT1G31450 29.974 387 243 12 10 375 57 436 1.87e-47 167
MS.gene029155.t1 AT2G28220 31.339 351 204 11 41 377 67 394 6.73e-46 162
MS.gene029155.t1 AT5G07030 33.238 349 213 9 38 376 112 450 4.70e-45 161
MS.gene029155.t1 AT2G35615 29.134 381 243 13 10 367 54 430 5.20e-45 161
MS.gene029155.t1 AT4G30040 31.503 346 207 11 41 367 85 419 1.31e-41 151
MS.gene029155.t1 AT2G28225 29.261 352 210 11 41 377 67 394 2.24e-41 150
MS.gene029155.t1 AT2G23945 31.073 354 203 15 41 367 96 435 5.65e-39 145
MS.gene029155.t1 AT3G12700 28.354 395 253 13 4 378 74 458 1.37e-34 133
MS.gene029155.t1 AT3G02740 28.650 363 222 14 39 375 83 434 2.33e-34 132
MS.gene029155.t1 AT4G30030 30.836 347 196 15 41 364 78 403 2.67e-34 131
MS.gene029155.t1 AT3G02740 28.532 361 221 14 41 375 10 359 2.76e-34 131
MS.gene029155.t1 AT2G36670 30.628 382 221 15 29 376 82 453 1.33e-33 130
MS.gene029155.t1 AT2G39710 29.867 375 211 17 43 378 67 428 3.42e-33 129
MS.gene029155.t1 AT2G36670 30.220 364 216 14 41 376 34 387 4.74e-33 128
MS.gene029155.t1 AT2G36670 30.220 364 216 14 41 376 34 387 4.74e-33 128
MS.gene029155.t1 AT2G36670 30.220 364 216 14 41 376 105 458 6.07e-33 129
MS.gene029155.t1 AT5G43100 28.291 357 220 13 38 375 73 412 2.54e-32 127
MS.gene029155.t1 AT5G43100 28.291 357 220 13 38 375 73 412 5.47e-32 127
MS.gene029155.t1 AT5G36260 27.660 329 202 12 39 344 76 391 1.90e-30 122
MS.gene029155.t1 AT1G66180 27.548 363 230 13 38 376 69 422 1.44e-29 118
MS.gene029155.t1 AT5G22850 28.351 388 226 19 3 357 49 417 2.02e-29 119
MS.gene029155.t1 AT1G05840 27.493 371 220 15 39 375 78 433 1.58e-28 116
MS.gene029155.t1 AT5G02190 29.491 373 203 19 50 377 82 439 2.29e-28 115
MS.gene029155.t1 AT5G37540 27.222 360 227 13 43 375 82 433 6.44e-28 114
MS.gene029155.t1 AT3G50050 27.424 361 220 12 38 375 90 431 1.47e-26 111
MS.gene029155.t1 AT1G65240 26.444 329 203 13 39 344 72 384 3.36e-26 109
MS.gene029155.t1 AT5G45120 24.694 409 238 16 30 375 72 473 3.10e-25 107
MS.gene029155.t1 AT1G49050 28.146 302 181 13 7 287 172 458 3.36e-24 103
MS.gene029155.t1 AT1G49050 28.065 310 180 14 7 295 172 459 3.69e-24 104
MS.gene029155.t1 AT3G25700 38.926 149 77 4 28 162 71 219 3.82e-24 102
MS.gene029155.t1 AT3G52500 27.202 386 223 15 39 376 88 463 9.21e-24 102
MS.gene029155.t1 AT1G77480 27.833 406 228 20 5 375 39 414 1.10e-23 102
MS.gene029155.t1 AT1G77480 27.833 406 228 20 5 375 39 414 1.20e-23 102
MS.gene029155.t1 AT1G08210 27.596 366 226 14 39 376 82 436 1.69e-23 102
MS.gene029155.t1 AT1G08210 27.596 366 226 14 39 376 116 470 1.90e-23 102
MS.gene029155.t1 AT1G08210 27.596 366 226 14 39 376 130 484 2.25e-23 102
MS.gene029155.t1 AT1G49050 27.899 276 159 13 41 295 30 286 4.33e-23 100
MS.gene029155.t1 AT1G08210 28.829 333 199 13 39 344 82 403 8.10e-23 100
MS.gene029155.t1 AT4G12920 26.425 386 227 12 6 367 22 374 8.56e-23 99.0
MS.gene029155.t1 AT3G51350 26.301 365 207 15 41 375 102 434 4.55e-21 95.1
MS.gene029155.t1 AT2G17760 25.833 360 223 15 41 375 104 444 1.49e-19 90.5
MS.gene029155.t1 AT3G51340 28.065 367 205 18 41 375 103 442 1.60e-19 90.5
MS.gene029155.t1 AT4G35880 25.352 355 214 13 41 367 107 438 3.86e-19 89.4
MS.gene029155.t1 AT4G16563 26.952 397 203 17 58 376 100 487 3.87e-19 89.4
MS.gene029155.t1 AT4G35880 25.656 343 204 13 41 355 107 426 1.78e-18 87.0
MS.gene029155.t1 AT1G44130 26.260 377 209 18 39 375 47 394 6.42e-18 85.1
MS.gene029155.t1 AT4G33490 24.866 374 223 15 39 377 58 408 1.07e-17 84.7
MS.gene029155.t1 AT3G51340 27.707 314 174 14 41 325 103 392 1.53e-17 84.0
MS.gene029155.t1 AT4G33490 29.930 284 156 13 13 275 27 288 2.52e-17 83.2
MS.gene029155.t1 AT3G42550 23.174 397 230 16 1 376 43 385 9.17e-17 81.6
MS.gene029155.t1 AT5G10080 24.129 402 251 15 13 378 68 451 1.92e-16 81.3
MS.gene029155.t1 AT3G51360 24.185 368 232 14 35 375 93 440 7.73e-16 79.3
MS.gene029155.t1 AT3G51360 24.185 368 232 14 35 375 83 430 9.66e-16 79.0
MS.gene029155.t1 AT3G51360 24.713 348 215 14 35 355 93 420 1.19e-15 78.6
MS.gene029155.t1 AT3G51360 24.839 310 189 12 35 320 93 382 1.64e-15 77.8
MS.gene029155.t1 AT3G51360 24.033 362 228 14 41 375 5 346 1.69e-15 77.8
MS.gene029155.t1 AT3G51360 24.713 348 215 14 35 355 83 410 1.99e-15 77.8
MS.gene029155.t1 AT3G51360 24.839 310 189 12 35 320 83 372 2.37e-15 77.4
MS.gene029155.t1 AT3G51340 26.804 291 163 13 41 302 103 372 2.82e-15 77.0
MS.gene029155.t1 AT3G51340 26.804 291 163 13 41 302 103 372 3.49e-15 77.4
MS.gene029155.t1 AT3G51360 25.000 264 156 10 35 276 93 336 3.68e-13 70.5
MS.gene029155.t1 AT5G48430 28.448 232 147 7 159 375 161 388 5.82e-13 70.1

Find 153 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCGGGCAGTGACATTATT+TGG 0.112279 1.3:+78121692 MS.gene029155:CDS
GGCTTTCGGGTCTTGGAGTT+GGG 0.185714 1.3:+78122202 MS.gene029155:CDS
TTCGGGTCGGGTGTGGTTTC+GGG 0.195700 1.3:+78121592 MS.gene029155:CDS
GCATTTGCTCCTTCTTCTTC+AGG 0.218132 1.3:+78122543 MS.gene029155:CDS
AATGGATACTCCTGATGTTT+TGG 0.222815 1.3:-78122379 None:intergenic
GTTCGGGTCGGGTGTGGTTT+CGG 0.228106 1.3:+78121591 MS.gene029155:CDS
GCCGGCTTACAATGCATTTC+GGG 0.244466 1.3:+78122326 MS.gene029155:CDS
GGTATGTTTGTTGGAGCAGC+TGG 0.262458 1.3:+78121979 MS.gene029155:CDS
TCATCTGGGTCGCTAGAATT+TGG 0.263511 1.3:+78122102 MS.gene029155:CDS
TGCCGTTATGAGGTTTCTTA+TGG 0.268217 1.3:+78121856 MS.gene029155:CDS
CGCCGGCTTACAATGCATTT+CGG 0.291370 1.3:+78122325 MS.gene029155:CDS
GGATGGAGCTAATGGGTATA+TGG 0.294523 1.3:+78122614 MS.gene029155:CDS
TATATCGGGCTTTCGGGTCT+TGG 0.310043 1.3:+78122195 MS.gene029155:CDS
GGGCTTTCGGGTCTTGGAGT+TGG 0.316663 1.3:+78122201 MS.gene029155:CDS
CGCCAGTCTGACCACCTAAT+TGG 0.318952 1.3:-78122041 None:intergenic
GCAGCTGGGTTGTTGGGTCT+TGG 0.325606 1.3:+78121994 MS.gene029155:CDS
TCTTCAGGACTTTCCATCAT+AGG 0.325784 1.3:+78122558 MS.gene029155:CDS
AAACGGGTTTGTGACGGTTC+GGG 0.329915 1.3:+78122422 MS.gene029155:CDS
AAATTTCAATCCCTTCTTGC+TGG 0.331540 1.3:-78122587 None:intergenic
GAATGGAGAGAGATTCTAAA+AGG 0.332342 1.3:+78121515 None:intergenic
TTGCTGGATGTTTCCTATGA+TGG 0.341457 1.3:-78122571 None:intergenic
AAATGAATTGGGTGAGGGAG+GGG 0.345584 1.3:+78122263 MS.gene029155:CDS
ACCCGAGAAATAAAATGATA+TGG 0.346874 1.3:-78122451 None:intergenic
GCTTTCGGGTCTTGGAGTTG+GGG 0.348212 1.3:+78122203 MS.gene029155:CDS
CCAATACGTGGTTATTGATT+CGG 0.350961 1.3:+78121675 MS.gene029155:CDS
ATTTCAGTGGATGGAGCTAA+TGG 0.353637 1.3:+78122606 MS.gene029155:CDS
GCTAATGGGTATATGGGATT+TGG 0.357251 1.3:+78122621 MS.gene029155:CDS
GGGTTGTTGGGTCTTGGAAG+TGG 0.359095 1.3:+78122000 MS.gene029155:CDS
CTTTCGGGTCTTGGAGTTGG+GGG 0.359398 1.3:+78122204 MS.gene029155:CDS
GACACATGTTATGATTTAAA+CGG 0.361043 1.3:+78122405 MS.gene029155:CDS
GAGCCCGTGGGTTATGAATC+AGG 0.367672 1.3:-78122161 None:intergenic
TTCGGGCAGTGACATTATTT+GGG 0.368954 1.3:+78121693 MS.gene029155:CDS
TAGTTATTGTTTAGTGAGTC+GGG 0.376613 1.3:+78122071 MS.gene029155:CDS
CAATACGTGGTTATTGATTC+GGG 0.383620 1.3:+78121676 MS.gene029155:CDS
GTCGGGTGTGGTTTCGGGTA+TGG 0.397951 1.3:+78121597 MS.gene029155:CDS
GGTTGTTGGGTCTTGGAAGT+GGG 0.398428 1.3:+78122001 MS.gene029155:CDS
TAAACGGGTTTGTGACGGTT+CGG 0.403107 1.3:+78122421 MS.gene029155:CDS
GCCGTTATGAGGTTTCTTAT+GGG 0.404335 1.3:+78121857 MS.gene029155:CDS
AGTCGGGGCACTGAATCATC+TGG 0.406241 1.3:+78122087 MS.gene029155:CDS
ACACATGTTATGATTTAAAC+GGG 0.407880 1.3:+78122406 MS.gene029155:CDS
GTTGGAGCAGCTGGGTTGTT+GGG 0.408232 1.3:+78121988 MS.gene029155:CDS
GGGGTTGAGGGTTCCTATAT+CGG 0.418943 1.3:+78122224 MS.gene029155:CDS
TGTTGGAGCAGCTGGGTTGT+TGG 0.420595 1.3:+78121987 MS.gene029155:CDS
TGCCCTTGAGACTGTTACAT+TGG 0.427294 1.3:+78121906 MS.gene029155:CDS
GGTATGAAACAGAGGAGTTC+GGG 0.428364 1.3:+78121575 MS.gene029155:CDS
GGAGAGTATTTCGTAAGAAT+AGG 0.441186 1.3:+78121631 MS.gene029155:CDS
AGGAACCAGGGTATGTTTGT+TGG 0.444845 1.3:+78121970 MS.gene029155:CDS
CGGGTGTGGGCATAGGAACC+AGG 0.446262 1.3:+78121957 MS.gene029155:CDS
TTAGTTATTGTTTAGTGAGT+CGG 0.448984 1.3:+78122070 MS.gene029155:CDS
CGGCGAATCGCCGGTAGCGT+CGG 0.452344 1.3:+78121553 MS.gene029155:CDS
TATGAGGTTTCTTATGGGGA+TGG 0.454223 1.3:+78121862 MS.gene029155:CDS
GTGATCCGAAACGTGGCTAT+CGG 0.454470 1.3:+78121937 MS.gene029155:CDS
CGGTGCCTGTGGGTGCTTCG+TGG 0.456663 1.3:+78122133 MS.gene029155:CDS
GCCCTTGAGACTGTTACATT+GGG 0.458217 1.3:+78121907 MS.gene029155:CDS
CGAAACGTGGCTATCGGGTG+TGG 0.461598 1.3:+78121943 MS.gene029155:CDS
CCGAATCAATAACCACGTAT+TGG 0.463017 1.3:-78121675 None:intergenic
GCCGTTGTGCGGCGAATCGC+CGG 0.464829 1.3:+78121544 MS.gene029155:CDS
GGGGATTCTTCATCTTATGC+TGG 0.467858 1.3:+78121772 MS.gene029155:CDS
GCTAGAATTTGGACGAGAAT+CGG 0.468088 1.3:+78122113 MS.gene029155:CDS
GGGTATGAAACAGAGGAGTT+CGG 0.473494 1.3:+78121574 MS.gene029155:CDS
TGATCCGAAACGTGGCTATC+GGG 0.475223 1.3:+78121938 MS.gene029155:CDS
GTCGGATTGGTGATAACATT+GGG 0.477208 1.3:-78121734 None:intergenic
GGCGAATCGCCGGTAGCGTC+GGG 0.478355 1.3:+78121554 MS.gene029155:CDS
ATGAGGTTTCTTATGGGGAT+GGG 0.479148 1.3:+78121863 MS.gene029155:CDS
GATGGAGCTAATGGGTATAT+GGG 0.482882 1.3:+78122615 MS.gene029155:CDS
TGAAGGGAGGTGCCGTTATG+AGG 0.492322 1.3:+78121846 MS.gene029155:CDS
TAAATGAATTGGGTGAGGGA+GGG 0.493214 1.3:+78122262 MS.gene029155:CDS
TGGCTATCGGGTGTGGGCAT+AGG 0.493489 1.3:+78121950 MS.gene029155:CDS
TTTCGGGTCTTGGAGTTGGG+GGG 0.497028 1.3:+78122205 MS.gene029155:CDS
GGTGCCTGTGGGTGCTTCGT+GGG 0.499303 1.3:+78122134 MS.gene029155:CDS
TGGTGATAACATTGGGTACA+TGG 0.501291 1.3:-78121727 None:intergenic
TTTCAGTGGATGGAGCTAAT+GGG 0.503081 1.3:+78122607 MS.gene029155:CDS
GAAACAGAGGAGTTCGGGTC+GGG 0.503157 1.3:+78121580 MS.gene029155:CDS
GGGATTGAAATTTCAGTGGA+TGG 0.503329 1.3:+78122597 MS.gene029155:CDS
CTAGCTGGAAGGGTCAATAT+AGG 0.505927 1.3:-78122477 None:intergenic
TATTTCGTAAGAATAGGAGT+TGG 0.506635 1.3:+78121637 MS.gene029155:CDS
AGAGGAGTTCGGGTCGGGTG+TGG 0.509324 1.3:+78121585 MS.gene029155:CDS
GGCCAATTAGGTGGTCAGAC+TGG 0.513423 1.3:+78122039 MS.gene029155:CDS
GGAGGGGTGGTCATGGACAC+CGG 0.514573 1.3:+78122279 MS.gene029155:CDS
CACACCCGATAGCCACGTTT+CGG 0.514707 1.3:-78121942 None:intergenic
GGGTGAGGGAGGGGTGGTCA+TGG 0.515063 1.3:+78122272 MS.gene029155:CDS
TCGGTTAAATGAATTGGGTG+AGG 0.515639 1.3:+78122257 MS.gene029155:CDS
TTAAATGAATTGGGTGAGGG+AGG 0.517316 1.3:+78122261 MS.gene029155:CDS
GGAATTAAGAAGTTCCTAGC+TGG 0.517708 1.3:-78122492 None:intergenic
GCATAAGATGAAGAATCCCC+CGG 0.520903 1.3:-78121769 None:intergenic
GAGAAATAAAATGATATGGT+TGG 0.523017 1.3:-78122447 None:intergenic
GGGATGGGTCCTATACTAAA+GGG 0.523693 1.3:+78121878 MS.gene029155:CDS
CCGTTATGAGGTTTCTTATG+GGG 0.528759 1.3:+78121858 MS.gene029155:CDS
TGTAGCCGTGTGGAGAATGC+AGG 0.531669 1.3:+78121817 MS.gene029155:CDS
CGGTTAAATGAATTGGGTGA+GGG 0.533268 1.3:+78122258 MS.gene029155:CDS
TCCCGAAATGCATTGTAAGC+CGG 0.534505 1.3:-78122327 None:intergenic
TAACCTCGTCACGGCAGTGC+CGG 0.534510 1.3:-78122298 None:intergenic
TTTCCCTGATTCATAACCCA+CGG 0.537283 1.3:+78122157 MS.gene029155:CDS
TGAATTGGGTGAGGGAGGGG+TGG 0.537828 1.3:+78122266 MS.gene029155:CDS
GGGGATGGGTCCTATACTAA+AGG 0.538590 1.3:+78121877 MS.gene029155:CDS
GGCAAGTGTCCCTTTAGTAT+AGG 0.540324 1.3:-78121887 None:intergenic
CTTGAGACTGTTACATTGGG+AGG 0.541400 1.3:+78121910 MS.gene029155:CDS
TCGGGTATGGAGCAAGGAAG+TGG 0.542447 1.3:+78121610 MS.gene029155:CDS
ACCGGCGATTCGCCGCACAA+CGG 0.545210 1.3:-78121545 None:intergenic
ACAAACCTACCCAAAACATC+AGG 0.549290 1.3:+78122369 MS.gene029155:CDS
TAGGAAACATCCAGCAAGAA+GGG 0.550149 1.3:+78122577 MS.gene029155:CDS
GAAACCCACGAAGCACCCAC+AGG 0.551071 1.3:-78122138 None:intergenic
GGTCGGATTGGTGATAACAT+TGG 0.551981 1.3:-78121735 None:intergenic
CTTAATTCCAGTGGATAGTG+TGG 0.552435 1.3:+78122506 MS.gene029155:CDS
GTGGTTTCGGGTATGGAGCA+AGG 0.556095 1.3:+78121604 MS.gene029155:CDS
TCTTATGCTGGTGTGTCTTG+CGG 0.561796 1.3:+78121784 MS.gene029155:CDS
TTAAGAAGTTCCTAGCTGGA+AGG 0.562288 1.3:-78122488 None:intergenic
TTCCCTGATTCATAACCCAC+GGG 0.562661 1.3:+78122158 MS.gene029155:CDS
CTCCCAATGTAACAGTCTCA+AGG 0.565490 1.3:-78121909 None:intergenic
ATGGAAAGTCCTGAAGAAGA+AGG 0.565827 1.3:-78122552 None:intergenic
CTATATTGACCCTTCCAGCT+AGG 0.565963 1.3:+78122478 MS.gene029155:CDS
AATGGAGAGAGATTCTAAAA+GGG 0.567636 1.3:+78121516 None:intergenic
ATTGGGTACATGGTTGACAC+TGG 0.572469 1.3:-78121717 None:intergenic
GAGAATGCAGGGTGTCATGA+AGG 0.574020 1.3:+78121829 MS.gene029155:CDS
ATAGGAAACATCCAGCAAGA+AGG 0.574037 1.3:+78122576 MS.gene029155:CDS
AGCCCGTGGGTTATGAATCA+GGG 0.574204 1.3:-78122160 None:intergenic
GTCGGGGCACTGAATCATCT+GGG 0.576511 1.3:+78122088 MS.gene029155:CDS
TTAATTCCAGTGGATAGTGT+GGG 0.577939 1.3:+78122507 MS.gene029155:CDS
AAAGTTCCCACACTATCCAC+TGG 0.580370 1.3:-78122513 None:intergenic
ATTCTCCACACGGCTACATA+CGG 0.584742 1.3:-78121812 None:intergenic
AATGCATTGTAAGCCGGCGT+AGG 0.585492 1.3:-78122321 None:intergenic
AGAAGGGATTGAAATTTCAG+TGG 0.588453 1.3:+78122593 MS.gene029155:CDS
TGATTTAAACGGGTTTGTGA+CGG 0.594090 1.3:+78122416 MS.gene029155:CDS
TGGACGAGAATCGGTGCCTG+TGG 0.598034 1.3:+78122122 MS.gene029155:CDS
AAAGGGTCACCGCCGTTGTG+CGG 0.600828 1.3:+78121533 MS.gene029155:CDS
GGCGATTCGCCGCACAACGG+CGG 0.601835 1.3:-78121542 None:intergenic
GAAACGTGGCTATCGGGTGT+GGG 0.602041 1.3:+78121944 MS.gene029155:CDS
GTATGTTTGTTGGAGCAGCT+GGG 0.602077 1.3:+78121980 MS.gene029155:CDS
TCCCAATGTAACAGTCTCAA+GGG 0.603717 1.3:-78121908 None:intergenic
TGTTTCATACCCGACGCTAC+CGG 0.608322 1.3:-78121563 None:intergenic
TAATTGGCCTACAAAAGACA+TGG 0.608647 1.3:-78122025 None:intergenic
TAGGAACTTCTTAATTCCAG+TGG 0.615344 1.3:+78122497 MS.gene029155:CDS
ATGTTATCACCAATCCGACC+CGG 0.616285 1.3:+78121738 MS.gene029155:CDS
CCCCATAAGAAACCTCATAA+CGG 0.617736 1.3:-78121858 None:intergenic
TGAAACAGAGGAGTTCGGGT+CGG 0.622350 1.3:+78121579 MS.gene029155:CDS
TAAGAAGTTCCTAGCTGGAA+GGG 0.625100 1.3:-78122487 None:intergenic
AGAATGCAGGGTGTCATGAA+GGG 0.627661 1.3:+78121830 MS.gene029155:CDS
CTGCTCCAACAAACATACCC+TGG 0.630612 1.3:-78121975 None:intergenic
AGTTATTGTTTAGTGAGTCG+GGG 0.632837 1.3:+78122072 MS.gene029155:CDS
GACACCCTGCATTCTCCACA+CGG 0.638693 1.3:-78121822 None:intergenic
ACACCGGCACTGCCGTGACG+AGG 0.644153 1.3:+78122295 MS.gene029155:CDS
GGACGAGAATCGGTGCCTGT+GGG 0.648473 1.3:+78122123 MS.gene029155:CDS
CGGCGTAGGTAACCTCGTCA+CGG 0.668982 1.3:-78122307 None:intergenic
CAATTAGGTGGTCAGACTGG+CGG 0.669034 1.3:+78122042 MS.gene029155:CDS
AGGAACTGTGATCCGAAACG+TGG 0.669373 1.3:+78121930 MS.gene029155:CDS
GGGTGTGGGCATAGGAACCA+GGG 0.673291 1.3:+78121958 MS.gene029155:CDS
CTCCACACGGCTACATACGG+TGG 0.673617 1.3:-78121809 None:intergenic
TAGCGTCGGGTATGAAACAG+AGG 0.673926 1.3:+78121567 MS.gene029155:CDS
ATGCAGGGTGTCATGAAGGG+AGG 0.676996 1.3:+78121833 MS.gene029155:CDS
TTCCACCGTATGTAGCCGTG+TGG 0.688346 1.3:+78121807 MS.gene029155:CDS
AATTGGCCTACAAAAGACAT+GGG 0.692119 1.3:-78122024 None:intergenic
GTAGCCGTGTGGAGAATGCA+GGG 0.695428 1.3:+78121818 MS.gene029155:CDS
CGTGACGAGGTTACCTACGC+CGG 0.710425 1.3:+78122308 MS.gene029155:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACCATATCATTTTATTTCT+CGG + chr1.3:78122449-78122468 MS.gene029155:CDS 20.0%
! ACACATGTTATGATTTAAAC+GGG + chr1.3:78122406-78122425 MS.gene029155:CDS 25.0%
! ATCATAACATGTGTCAAAAA+TGG - chr1.3:78122400-78122419 None:intergenic 25.0%
! GACACATGTTATGATTTAAA+CGG + chr1.3:78122405-78122424 MS.gene029155:CDS 25.0%
! GAGAAATAAAATGATATGGT+TGG - chr1.3:78122450-78122469 None:intergenic 25.0%
! TTAGTTATTGTTTAGTGAGT+CGG + chr1.3:78122070-78122089 MS.gene029155:CDS 25.0%
!! TTTTTATTATATCGGGCTTT+CGG + chr1.3:78122188-78122207 MS.gene029155:CDS 25.0%
!!! ACCATATCATTTTATTTCTC+GGG + chr1.3:78122450-78122469 MS.gene029155:CDS 25.0%
!!! GTTTTTCGGTTAAATGAATT+GGG + chr1.3:78122252-78122271 MS.gene029155:CDS 25.0%
!!! TGTTTTTCGGTTAAATGAAT+TGG + chr1.3:78122251-78122270 MS.gene029155:CDS 25.0%
ACCCGAGAAATAAAATGATA+TGG - chr1.3:78122454-78122473 None:intergenic 30.0%
AGCCCGATATAATAAAAACT+CGG - chr1.3:78122186-78122205 None:intergenic 30.0%
TAGTTATTGTTTAGTGAGTC+GGG + chr1.3:78122071-78122090 MS.gene029155:CDS 30.0%
TATTTCGTAAGAATAGGAGT+TGG + chr1.3:78121637-78121656 MS.gene029155:CDS 30.0%
! CTATATCGGAAGATGTTTTT+CGG + chr1.3:78122238-78122257 MS.gene029155:CDS 30.0%
! CTCCGAGTTTTTATTATATC+GGG + chr1.3:78122181-78122200 MS.gene029155:CDS 30.0%
! GCTCCGAGTTTTTATTATAT+CGG + chr1.3:78122180-78122199 MS.gene029155:CDS 30.0%
! TTTTATTATATCGGGCTTTC+GGG + chr1.3:78122189-78122208 MS.gene029155:CDS 30.0%
!! ATATCATTTTATTTCTCGGG+TGG + chr1.3:78122453-78122472 MS.gene029155:CDS 30.0%
!! TATCATTTTATTTCTCGGGT+GGG + chr1.3:78122454-78122473 MS.gene029155:CDS 30.0%
!!! ATAACCACGTATTGGTTTTT+TGG - chr1.3:78121670-78121689 None:intergenic 30.0%
AAATTTCAATCCCTTCTTGC+TGG - chr1.3:78122590-78122609 None:intergenic 35.0%
AGAAGGGATTGAAATTTCAG+TGG + chr1.3:78122593-78122612 MS.gene029155:CDS 35.0%
AGTTATTGTTTAGTGAGTCG+GGG + chr1.3:78122072-78122091 MS.gene029155:CDS 35.0%
CGAAAAACATCTTCCGATAT+AGG - chr1.3:78122240-78122259 None:intergenic 35.0%
TAGGAACTTCTTAATTCCAG+TGG + chr1.3:78122497-78122516 MS.gene029155:CDS 35.0%
TTAATTCCAGTGGATAGTGT+GGG + chr1.3:78122507-78122526 MS.gene029155:CDS 35.0%
! AATGGATACTCCTGATGTTT+TGG - chr1.3:78122382-78122401 None:intergenic 35.0%
! AATTGGCCTACAAAAGACAT+GGG - chr1.3:78122027-78122046 None:intergenic 35.0%
! ATGGATACTCCTGATGTTTT+GGG - chr1.3:78122381-78122400 None:intergenic 35.0%
! ATGTCTTTTGTAGGCCAATT+AGG + chr1.3:78122027-78122046 MS.gene029155:CDS 35.0%
! CCAATACGTGGTTATTGATT+CGG + chr1.3:78121675-78121694 MS.gene029155:CDS 35.0%
! TAATTGGCCTACAAAAGACA+TGG - chr1.3:78122028-78122047 None:intergenic 35.0%
! TGATTTAAACGGGTTTGTGA+CGG + chr1.3:78122416-78122435 MS.gene029155:CDS 35.0%
!! CAATACGTGGTTATTGATTC+GGG + chr1.3:78121676-78121695 MS.gene029155:CDS 35.0%
!! GGAGAGTATTTCGTAAGAAT+AGG + chr1.3:78121631-78121650 MS.gene029155:CDS 35.0%
ACAAACCTACCCAAAACATC+AGG + chr1.3:78122369-78122388 MS.gene029155:CDS 40.0%
ATAGGAAACATCCAGCAAGA+AGG + chr1.3:78122576-78122595 MS.gene029155:CDS 40.0%
ATGAGGTTTCTTATGGGGAT+GGG + chr1.3:78121863-78121882 MS.gene029155:CDS 40.0%
ATGGAAAGTCCTGAAGAAGA+AGG - chr1.3:78122555-78122574 None:intergenic 40.0%
ATTCGGGCAGTGACATTATT+TGG + chr1.3:78121692-78121711 MS.gene029155:CDS 40.0%
ATTTCAGTGGATGGAGCTAA+TGG + chr1.3:78122606-78122625 MS.gene029155:CDS 40.0%
CCCCATAAGAAACCTCATAA+CGG - chr1.3:78121861-78121880 None:intergenic 40.0%
CCGAATCAATAACCACGTAT+TGG - chr1.3:78121678-78121697 None:intergenic 40.0%
CCGTTATGAGGTTTCTTATG+GGG + chr1.3:78121858-78121877 MS.gene029155:CDS 40.0%
CGGTTAAATGAATTGGGTGA+GGG + chr1.3:78122258-78122277 MS.gene029155:CDS 40.0%
CTTAATTCCAGTGGATAGTG+TGG + chr1.3:78122506-78122525 MS.gene029155:CDS 40.0%
GCCGTTATGAGGTTTCTTAT+GGG + chr1.3:78121857-78121876 MS.gene029155:CDS 40.0%
GCTAGAATTTGGACGAGAAT+CGG + chr1.3:78122113-78122132 MS.gene029155:CDS 40.0%
GGAATTAAGAAGTTCCTAGC+TGG - chr1.3:78122495-78122514 None:intergenic 40.0%
GGGATTGAAATTTCAGTGGA+TGG + chr1.3:78122597-78122616 MS.gene029155:CDS 40.0%
TAAATGAATTGGGTGAGGGA+GGG + chr1.3:78122262-78122281 MS.gene029155:CDS 40.0%
TAAGAAGTTCCTAGCTGGAA+GGG - chr1.3:78122490-78122509 None:intergenic 40.0%
TAGGAAACATCCAGCAAGAA+GGG + chr1.3:78122577-78122596 MS.gene029155:CDS 40.0%
TATGAGGTTTCTTATGGGGA+TGG + chr1.3:78121862-78121881 MS.gene029155:CDS 40.0%
TCCACCAAAAAACCAATACG+TGG + chr1.3:78121663-78121682 MS.gene029155:CDS 40.0%
TCCCAATGTAACAGTCTCAA+GGG - chr1.3:78121911-78121930 None:intergenic 40.0%
TCGGTTAAATGAATTGGGTG+AGG + chr1.3:78122257-78122276 MS.gene029155:CDS 40.0%
TCTTCAGGACTTTCCATCAT+AGG + chr1.3:78122558-78122577 MS.gene029155:CDS 40.0%
TGCCGTTATGAGGTTTCTTA+TGG + chr1.3:78121856-78121875 MS.gene029155:CDS 40.0%
TGGTGATAACATTGGGTACA+TGG - chr1.3:78121730-78121749 None:intergenic 40.0%
TTAAATGAATTGGGTGAGGG+AGG + chr1.3:78122261-78122280 MS.gene029155:CDS 40.0%
TTAAGAAGTTCCTAGCTGGA+AGG - chr1.3:78122491-78122510 None:intergenic 40.0%
TTCGGGCAGTGACATTATTT+GGG + chr1.3:78121693-78121712 MS.gene029155:CDS 40.0%
TTGCTGGATGTTTCCTATGA+TGG - chr1.3:78122574-78122593 None:intergenic 40.0%
TTTCAGTGGATGGAGCTAAT+GGG + chr1.3:78122607-78122626 MS.gene029155:CDS 40.0%
TTTCCCTGATTCATAACCCA+CGG + chr1.3:78122157-78122176 MS.gene029155:CDS 40.0%
! GATGGAGCTAATGGGTATAT+GGG + chr1.3:78122615-78122634 MS.gene029155:CDS 40.0%
! GCTAATGGGTATATGGGATT+TGG + chr1.3:78122621-78122640 MS.gene029155:CDS 40.0%
! TCTTTTGTAGGCCAATTAGG+TGG + chr1.3:78122030-78122049 MS.gene029155:CDS 40.0%
!! ATACTCCTGATGTTTTGGGT+AGG - chr1.3:78122377-78122396 None:intergenic 40.0%
!! GTCGGATTGGTGATAACATT+GGG - chr1.3:78121737-78121756 None:intergenic 40.0%
!!! ACCACGTATTGGTTTTTTGG+TGG - chr1.3:78121667-78121686 None:intergenic 40.0%
AAAGTTCCCACACTATCCAC+TGG - chr1.3:78122516-78122535 None:intergenic 45.0%
AAATGAATTGGGTGAGGGAG+GGG + chr1.3:78122263-78122282 MS.gene029155:CDS 45.0%
AATAAAAACTCGGAGCCCGT+GGG - chr1.3:78122176-78122195 None:intergenic 45.0%
AGGAACCAGGGTATGTTTGT+TGG + chr1.3:78121970-78121989 MS.gene029155:CDS 45.0%
ATGTTATCACCAATCCGACC+CGG + chr1.3:78121738-78121757 MS.gene029155:CDS 45.0%
ATTCTCCACACGGCTACATA+CGG - chr1.3:78121815-78121834 None:intergenic 45.0%
ATTGGGTACATGGTTGACAC+TGG - chr1.3:78121720-78121739 None:intergenic 45.0%
CATAAGATGAAGAATCCCCC+GGG - chr1.3:78121771-78121790 None:intergenic 45.0%
CTAGCTGGAAGGGTCAATAT+AGG - chr1.3:78122480-78122499 None:intergenic 45.0%
CTATATTGACCCTTCCAGCT+AGG + chr1.3:78122478-78122497 MS.gene029155:CDS 45.0%
CTCCCAATGTAACAGTCTCA+AGG - chr1.3:78121912-78121931 None:intergenic 45.0%
CTTGAGACTGTTACATTGGG+AGG + chr1.3:78121910-78121929 MS.gene029155:CDS 45.0%
GCATAAGATGAAGAATCCCC+CGG - chr1.3:78121772-78121791 None:intergenic 45.0%
GCATTTGCTCCTTCTTCTTC+AGG + chr1.3:78122543-78122562 MS.gene029155:CDS 45.0%
GCCCTTGAGACTGTTACATT+GGG + chr1.3:78121907-78121926 MS.gene029155:CDS 45.0%
GGCAAGTGTCCCTTTAGTAT+AGG - chr1.3:78121890-78121909 None:intergenic 45.0%
GGGATGGGTCCTATACTAAA+GGG + chr1.3:78121878-78121897 MS.gene029155:CDS 45.0%
GGGGATTCTTCATCTTATGC+TGG + chr1.3:78121772-78121791 MS.gene029155:CDS 45.0%
GGGTATGAAACAGAGGAGTT+CGG + chr1.3:78121574-78121593 MS.gene029155:CDS 45.0%
GGTATGAAACAGAGGAGTTC+GGG + chr1.3:78121575-78121594 MS.gene029155:CDS 45.0%
TAATAAAAACTCGGAGCCCG+TGG - chr1.3:78122177-78122196 None:intergenic 45.0%
TCATCTGGGTCGCTAGAATT+TGG + chr1.3:78122102-78122121 MS.gene029155:CDS 45.0%
TCCCGAAATGCATTGTAAGC+CGG - chr1.3:78122330-78122349 None:intergenic 45.0%
TCTTATGCTGGTGTGTCTTG+CGG + chr1.3:78121784-78121803 MS.gene029155:CDS 45.0%
TGCCCTTGAGACTGTTACAT+TGG + chr1.3:78121906-78121925 MS.gene029155:CDS 45.0%
TTCCCTGATTCATAACCCAC+GGG + chr1.3:78122158-78122177 MS.gene029155:CDS 45.0%
! AGAATGCAGGGTGTCATGAA+GGG + chr1.3:78121830-78121849 MS.gene029155:CDS 45.0%
! GGATGGAGCTAATGGGTATA+TGG + chr1.3:78122614-78122633 MS.gene029155:CDS 45.0%
! GTATGTTTGTTGGAGCAGCT+GGG + chr1.3:78121980-78121999 MS.gene029155:CDS 45.0%
! TAAACGGGTTTGTGACGGTT+CGG + chr1.3:78122421-78122440 MS.gene029155:CDS 45.0%
!! GGTCGGATTGGTGATAACAT+TGG - chr1.3:78121738-78121757 None:intergenic 45.0%
AATCCCCCGGGTTAAAAACC+GGG - chr1.3:78121759-78121778 None:intergenic 50.0%
AATGCATTGTAAGCCGGCGT+AGG - chr1.3:78122324-78122343 None:intergenic 50.0%
AGGAACTGTGATCCGAAACG+TGG + chr1.3:78121930-78121949 MS.gene029155:CDS 50.0%
CAATTAGGTGGTCAGACTGG+CGG + chr1.3:78122042-78122061 MS.gene029155:CDS 50.0%
CTGCTCCAACAAACATACCC+TGG - chr1.3:78121978-78121997 None:intergenic 50.0%
GAATCCCCCGGGTTAAAAAC+CGG - chr1.3:78121760-78121779 None:intergenic 50.0%
GGGGATGGGTCCTATACTAA+AGG + chr1.3:78121877-78121896 MS.gene029155:CDS 50.0%
GGGGTTGAGGGTTCCTATAT+CGG + chr1.3:78122224-78122243 MS.gene029155:CDS 50.0%
GGTTAAAAACCGGGTCGGAT+TGG - chr1.3:78121750-78121769 None:intergenic 50.0%
GGTTGTTGGGTCTTGGAAGT+GGG + chr1.3:78122001-78122020 MS.gene029155:CDS 50.0%
GTGATCCGAAACGTGGCTAT+CGG + chr1.3:78121937-78121956 MS.gene029155:CDS 50.0%
TGAAACAGAGGAGTTCGGGT+CGG + chr1.3:78121579-78121598 MS.gene029155:CDS 50.0%
TGATCCGAAACGTGGCTATC+GGG + chr1.3:78121938-78121957 MS.gene029155:CDS 50.0%
TGTTTCATACCCGACGCTAC+CGG - chr1.3:78121566-78121585 None:intergenic 50.0%
! AAACGGGTTTGTGACGGTTC+GGG + chr1.3:78122422-78122441 MS.gene029155:CDS 50.0%
! AGCCCGTGGGTTATGAATCA+GGG - chr1.3:78122163-78122182 None:intergenic 50.0%
! AGTGGGCCCATGTCTTTTGT+AGG + chr1.3:78122018-78122037 MS.gene029155:CDS 50.0%
! ATCCGACCCGGTTTTTAACC+CGG + chr1.3:78121750-78121769 MS.gene029155:CDS 50.0%
! GAGAATGCAGGGTGTCATGA+AGG + chr1.3:78121829-78121848 MS.gene029155:CDS 50.0%
! GCCGGCTTACAATGCATTTC+GGG + chr1.3:78122326-78122345 MS.gene029155:CDS 50.0%
! GGTATGTTTGTTGGAGCAGC+TGG + chr1.3:78121979-78121998 MS.gene029155:CDS 50.0%
! TAGCGTCGGGTATGAAACAG+AGG + chr1.3:78121567-78121586 MS.gene029155:CDS 50.0%
! TATATCGGGCTTTCGGGTCT+TGG + chr1.3:78122195-78122214 MS.gene029155:CDS 50.0%
!! CGCCGGCTTACAATGCATTT+CGG + chr1.3:78122325-78122344 MS.gene029155:CDS 50.0%
CACACCCGATAGCCACGTTT+CGG - chr1.3:78121945-78121964 None:intergenic 55.0%
CGCCAGTCTGACCACCTAAT+TGG - chr1.3:78122044-78122063 None:intergenic 55.0%
GAAACAGAGGAGTTCGGGTC+GGG + chr1.3:78121580-78121599 MS.gene029155:CDS 55.0%
GAAACGTGGCTATCGGGTGT+GGG + chr1.3:78121944-78121963 MS.gene029155:CDS 55.0%
GACACCCTGCATTCTCCACA+CGG - chr1.3:78121825-78121844 None:intergenic 55.0%
GGCCAATTAGGTGGTCAGAC+TGG + chr1.3:78122039-78122058 MS.gene029155:CDS 55.0%
GGGTTGTTGGGTCTTGGAAG+TGG + chr1.3:78122000-78122019 MS.gene029155:CDS 55.0%
GTAGCCGTGTGGAGAATGCA+GGG + chr1.3:78121818-78121837 MS.gene029155:CDS 55.0%
GTTGGAGCAGCTGGGTTGTT+GGG + chr1.3:78121988-78122007 MS.gene029155:CDS 55.0%
TCGGGTATGGAGCAAGGAAG+TGG + chr1.3:78121610-78121629 MS.gene029155:CDS 55.0%
TCTTGGAGTTGGGGGGTTGA+GGG + chr1.3:78122212-78122231 MS.gene029155:CDS 55.0%
TGTAGCCGTGTGGAGAATGC+AGG + chr1.3:78121817-78121836 MS.gene029155:CDS 55.0%
TGTTGGAGCAGCTGGGTTGT+TGG + chr1.3:78121987-78122006 MS.gene029155:CDS 55.0%
TTCCACCGTATGTAGCCGTG+TGG + chr1.3:78121807-78121826 MS.gene029155:CDS 55.0%
! ATGCAGGGTGTCATGAAGGG+AGG + chr1.3:78121833-78121852 MS.gene029155:CDS 55.0%
! CTTTCGGGTCTTGGAGTTGG+GGG + chr1.3:78122204-78122223 MS.gene029155:CDS 55.0%
! GAGCCCGTGGGTTATGAATC+AGG - chr1.3:78122164-78122183 None:intergenic 55.0%
! GCTTTCGGGTCTTGGAGTTG+GGG + chr1.3:78122203-78122222 MS.gene029155:CDS 55.0%
! GGCTTTCGGGTCTTGGAGTT+GGG + chr1.3:78122202-78122221 MS.gene029155:CDS 55.0%
! GTGGTTTCGGGTATGGAGCA+AGG + chr1.3:78121604-78121623 MS.gene029155:CDS 55.0%
! TCCGACCCGGTTTTTAACCC+GGG + chr1.3:78121751-78121770 MS.gene029155:CDS 55.0%
! TTTCGGGTCTTGGAGTTGGG+GGG + chr1.3:78122205-78122224 MS.gene029155:CDS 55.0%
!! AGTCGGGGCACTGAATCATC+TGG + chr1.3:78122087-78122106 MS.gene029155:CDS 55.0%
!! GTCGGGGCACTGAATCATCT+GGG + chr1.3:78122088-78122107 MS.gene029155:CDS 55.0%
!! TGAAGGGAGGTGCCGTTATG+AGG + chr1.3:78121846-78121865 MS.gene029155:CDS 55.0%
AAAGGGTCACCGCCGTTGTG+CGG + chr1.3:78121533-78121552 MS.gene029155:CDS 60.0%
CCCCGGGTTAAAAACCGGGT+CGG - chr1.3:78121755-78121774 None:intergenic 60.0%
CGAAACGTGGCTATCGGGTG+TGG + chr1.3:78121943-78121962 MS.gene029155:CDS 60.0%
CGGCGTAGGTAACCTCGTCA+CGG - chr1.3:78122310-78122329 None:intergenic 60.0%
CGTGACGAGGTTACCTACGC+CGG + chr1.3:78122308-78122327 MS.gene029155:CDS 60.0%
CTCCACACGGCTACATACGG+TGG - chr1.3:78121812-78121831 None:intergenic 60.0%
GCAGCTGGGTTGTTGGGTCT+TGG + chr1.3:78121994-78122013 MS.gene029155:CDS 60.0%
GGGTGTGGGCATAGGAACCA+GGG + chr1.3:78121958-78121977 MS.gene029155:CDS 60.0%
GTCTTGGAGTTGGGGGGTTG+AGG + chr1.3:78122211-78122230 MS.gene029155:CDS 60.0%
GTTCGGGTCGGGTGTGGTTT+CGG + chr1.3:78121591-78121610 MS.gene029155:CDS 60.0%
TAACCTCGTCACGGCAGTGC+CGG - chr1.3:78122301-78122320 None:intergenic 60.0%
TGAATTGGGTGAGGGAGGGG+TGG + chr1.3:78122266-78122285 MS.gene029155:CDS 60.0%
TGGCTATCGGGTGTGGGCAT+AGG + chr1.3:78121950-78121969 MS.gene029155:CDS 60.0%
TTCGGGTCGGGTGTGGTTTC+GGG + chr1.3:78121592-78121611 MS.gene029155:CDS 60.0%
! CCGACCCGGTTTTTAACCCG+GGG + chr1.3:78121752-78121771 MS.gene029155:CDS 60.0%
! CGACCCGGTTTTTAACCCGG+GGG + chr1.3:78121753-78121772 MS.gene029155:CDS 60.0%
! GAAACCCACGAAGCACCCAC+AGG - chr1.3:78122141-78122160 None:intergenic 60.0%
! GGACGAGAATCGGTGCCTGT+GGG + chr1.3:78122123-78122142 MS.gene029155:CDS 60.0%
! GGGCTTTCGGGTCTTGGAGT+TGG + chr1.3:78122201-78122220 MS.gene029155:CDS 60.0%
! GTCGGGTGTGGTTTCGGGTA+TGG + chr1.3:78121597-78121616 MS.gene029155:CDS 60.0%
! TGGACGAGAATCGGTGCCTG+TGG + chr1.3:78122122-78122141 MS.gene029155:CDS 60.0%
ACCGGCGATTCGCCGCACAA+CGG - chr1.3:78121548-78121567 None:intergenic 65.0%
AGAGGAGTTCGGGTCGGGTG+TGG + chr1.3:78121585-78121604 MS.gene029155:CDS 65.0%
CGGGTGTGGGCATAGGAACC+AGG + chr1.3:78121957-78121976 MS.gene029155:CDS 65.0%
GGAGGGGTGGTCATGGACAC+CGG + chr1.3:78122279-78122298 MS.gene029155:CDS 65.0%
GGTGCCTGTGGGTGCTTCGT+GGG + chr1.3:78122134-78122153 MS.gene029155:CDS 65.0%
ACACCGGCACTGCCGTGACG+AGG + chr1.3:78122295-78122314 MS.gene029155:CDS 70.0%
CGGCGAATCGCCGGTAGCGT+CGG + chr1.3:78121553-78121572 MS.gene029155:CDS 70.0%
CGGTGCCTGTGGGTGCTTCG+TGG + chr1.3:78122133-78122152 MS.gene029155:CDS 70.0%
GCCGTTGTGCGGCGAATCGC+CGG + chr1.3:78121544-78121563 MS.gene029155:CDS 70.0%
GGCGAATCGCCGGTAGCGTC+GGG + chr1.3:78121554-78121573 MS.gene029155:CDS 70.0%
GGCGATTCGCCGCACAACGG+CGG - chr1.3:78121545-78121564 None:intergenic 70.0%
GGGTGAGGGAGGGGTGGTCA+TGG + chr1.3:78122272-78122291 MS.gene029155:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 78121517 78122650 78121517 ID=MS.gene029155
chr1.3 mRNA 78121517 78122650 78121517 ID=MS.gene029155.t1;Parent=MS.gene029155
chr1.3 exon 78121517 78122650 78121517 ID=MS.gene029155.t1.exon1;Parent=MS.gene029155.t1
chr1.3 CDS 78121517 78122650 78121517 ID=cds.MS.gene029155.t1;Parent=MS.gene029155.t1
Gene Sequence

>MS.gene029155

ATGGAGAGAGATTCTAAAAGGGTCACCGCCGTTGTGCGGCGAATCGCCGGTAGCGTCGGGTATGAAACAGAGGAGTTCGGGTCGGGTGTGGTTTCGGGTATGGAGCAAGGAAGTGGAGAGTATTTCGTAAGAATAGGAGTTGGAAGTCCACCAAAAAACCAATACGTGGTTATTGATTCGGGCAGTGACATTATTTGGGTCCAGTGTCAACCATGTACCCAATGTTATCACCAATCCGACCCGGTTTTTAACCCGGGGGATTCTTCATCTTATGCTGGTGTGTCTTGCGGTTCCACCGTATGTAGCCGTGTGGAGAATGCAGGGTGTCATGAAGGGAGGTGCCGTTATGAGGTTTCTTATGGGGATGGGTCCTATACTAAAGGGACACTTGCCCTTGAGACTGTTACATTGGGAGGAACTGTGATCCGAAACGTGGCTATCGGGTGTGGGCATAGGAACCAGGGTATGTTTGTTGGAGCAGCTGGGTTGTTGGGTCTTGGAAGTGGGCCCATGTCTTTTGTAGGCCAATTAGGTGGTCAGACTGGCGGTACATTTAGTTATTGTTTAGTGAGTCGGGGCACTGAATCATCTGGGTCGCTAGAATTTGGACGAGAATCGGTGCCTGTGGGTGCTTCGTGGGTTTCCCTGATTCATAACCCACGGGCTCCGAGTTTTTATTATATCGGGCTTTCGGGTCTTGGAGTTGGGGGGTTGAGGGTTCCTATATCGGAAGATGTTTTTCGGTTAAATGAATTGGGTGAGGGAGGGGTGGTCATGGACACCGGCACTGCCGTGACGAGGTTACCTACGCCGGCTTACAATGCATTTCGGGATGCATTTATTGCTCAAACGACAAACCTACCCAAAACATCAGGAGTATCCATTTTTGACACATGTTATGATTTAAACGGGTTTGTGACGGTTCGGGTTCCAACCATATCATTTTATTTCTCGGGTGGGCCTATATTGACCCTTCCAGCTAGGAACTTCTTAATTCCAGTGGATAGTGTGGGAACTTTTTGCTTTGCATTTGCTCCTTCTTCTTCAGGACTTTCCATCATAGGAAACATCCAGCAAGAAGGGATTGAAATTTCAGTGGATGGAGCTAATGGGTATATGGGATTTGGACCCAAT
Protein sequence

>MS.gene029155.t1

MERDSKRVTAVVRRIAGSVGYETEEFGSGVVSGMEQGSGEYFVRIGVGSPPKNQYVVIDSGSDIIWVQCQPCTQCYHQSDPVFNPGDSSSYAGVSCGSTVCSRVENAGCHEGRCRYEVSYGDGSYTKGTLALETVTLGGTVIRNVAIGCGHRNQGMFVGAAGLLGLGSGPMSFVGQLGGQTGGTFSYCLVSRGTESSGSLEFGRESVPVGASWVSLIHNPRAPSFYYIGLSGLGVGGLRVPISEDVFRLNELGEGGVVMDTGTAVTRLPTPAYNAFRDAFIAQTTNLPKTSGVSIFDTCYDLNGFVTVRVPTISFYFSGGPILTLPARNFLIPVDSVGTFCFAFAPSSSGLSIIGNIQQEGIEISVDGANGYMGFGPN