AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029218

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029218.t1 MTR_1g114290 93.976 166 7 2 1 165 1 164 2.88e-103 294
MS.gene029218.t1 MTR_2g079420 38.053 113 70 0 41 153 40 152 3.33e-25 95.5
MS.gene029218.t1 MTR_3g089065 42.169 83 48 0 71 153 70 152 5.47e-24 92.4
MS.gene029218.t1 MTR_4g085880 45.122 82 45 0 72 153 66 147 1.95e-23 90.9
MS.gene029218.t1 MTR_1g098660 40.909 88 50 1 77 164 68 153 1.57e-22 88.6
MS.gene029218.t1 MTR_8g059015 39.759 83 50 0 71 153 73 155 7.19e-21 84.3
MS.gene029218.t1 MTR_7g009070 39.744 78 43 2 86 160 47 123 5.45e-17 73.2
MS.gene029218.t1 MTR_2g079400 37.209 86 54 0 68 153 31 116 1.10e-15 70.1
MS.gene029218.t1 MTR_2g079340 38.750 80 49 0 74 153 39 118 8.67e-15 68.2
MS.gene029218.t1 MTR_5g084930 35.780 109 65 2 53 158 14 120 1.86e-14 70.1
MS.gene029218.t1 MTR_5g084930 32.632 95 60 1 73 163 162 256 5.49e-13 65.9
MS.gene029218.t1 MTR_1g023140 36.735 98 52 4 77 165 15 111 3.25e-14 65.9
MS.gene029218.t1 MTR_2g079380 38.372 86 53 0 68 153 15 100 8.03e-14 67.4
MS.gene029218.t1 MTR_1g087520 39.535 86 46 2 79 158 157 242 1.15e-13 67.8
MS.gene029218.t1 MTR_1g037680 35.294 85 53 1 81 163 89 173 4.01e-13 64.3
MS.gene029218.t1 MTR_3g112410 37.209 86 47 3 86 165 27 111 5.05e-13 62.4
MS.gene029218.t1 MTR_2g021750 34.483 116 71 2 53 165 14 127 1.44e-12 64.7
MS.gene029218.t1 MTR_2g079360 34.375 96 62 1 59 153 34 129 2.26e-12 61.6
MS.gene029218.t1 MTR_8g107460 35.294 85 53 2 70 153 258 341 2.59e-11 60.8
MS.gene029218.t1 MTR_5g021180 31.343 67 45 1 85 151 28 93 3.05e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029218.t1 AT1G50320 53.757 173 64 5 1 165 1 165 4.97e-55 172
MS.gene029218.t1 AT1G76760 44.186 86 46 1 79 164 73 156 2.46e-24 93.2
MS.gene029218.t1 AT1G43560 43.529 85 46 1 79 163 68 150 6.82e-22 87.0
MS.gene029218.t1 AT1G03680 40.476 84 50 0 70 153 75 158 2.41e-21 85.9
MS.gene029218.t1 AT2G15570 41.463 82 48 0 72 153 70 151 5.75e-21 84.7
MS.gene029218.t1 AT2G15570 41.463 82 48 0 72 153 69 150 6.32e-21 84.7
MS.gene029218.t1 AT3G15360 39.759 83 50 0 71 153 88 170 1.49e-20 84.0
MS.gene029218.t1 AT4G03520 37.349 83 52 0 71 153 82 164 2.35e-18 78.2
MS.gene029218.t1 AT5G39950 37.209 86 49 3 78 160 39 122 7.77e-16 70.5
MS.gene029218.t1 AT2G32920 36.082 97 59 1 71 164 32 128 2.20e-14 70.1
MS.gene029218.t1 AT1G04980 36.735 98 59 1 71 165 34 131 3.11e-14 69.7
MS.gene029218.t1 AT1G04980 31.579 95 61 1 73 163 171 265 3.76e-11 60.8
MS.gene029218.t1 AT2G47470 39.773 88 47 2 77 158 149 236 1.26e-13 67.4
MS.gene029218.t1 AT2G47470 39.773 88 47 2 77 158 149 236 1.27e-13 67.8
MS.gene029218.t1 AT2G47470 39.773 88 47 2 77 158 149 236 1.35e-13 67.0
MS.gene029218.t1 AT2G47470 39.773 88 47 2 77 158 149 236 1.60e-13 67.0
MS.gene029218.t1 AT3G06730 34.737 95 59 2 71 163 77 170 4.34e-13 64.3
MS.gene029218.t1 AT5G42980 38.235 68 41 1 85 152 25 91 7.76e-13 62.0
MS.gene029218.t1 AT5G60640 38.947 95 53 3 74 164 108 201 8.08e-13 65.5
MS.gene029218.t1 AT5G60640 38.947 95 53 3 74 164 108 201 1.14e-12 65.1
MS.gene029218.t1 AT5G60640 37.755 98 56 3 71 164 105 201 4.60e-12 63.5
MS.gene029218.t1 AT1G69880 35.714 84 52 2 71 153 42 124 1.59e-11 59.3
MS.gene029218.t1 AT1G19730 30.380 79 52 1 85 160 26 104 3.00e-11 57.8
MS.gene029218.t1 AT1G77510 35.577 104 56 5 71 164 31 133 4.20e-11 60.5
MS.gene029218.t1 AT1G45145 29.070 86 59 2 66 151 7 90 4.24e-11 57.4

Find 49 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAAGAGTATAAAGTTTA+TGG 0.088645 1.2:-84189297 MS.gene029218:CDS
CCCCGTTCTTGAAGAGTATC+AGG 0.263376 1.2:+84189265 None:intergenic
GCACCTTCCTTCCTGCTTCC+TGG 0.279114 1.2:+84189234 None:intergenic
CCCTGATACTCTTCAAGAAC+GGG 0.388833 1.2:-84189266 MS.gene029218:CDS
TCAATACGGTTTCCTTGAAC+TGG 0.391435 1.2:+84190974 None:intergenic
AAGAACGGGGAGGAATTTCC+AGG 0.409346 1.2:-84189252 MS.gene029218:CDS
TCTAACTCTCCCAACCGTTC+CGG 0.449468 1.2:-84191169 MS.gene029218:CDS
CCGTTTGATCACTCCAGCTA+TGG 0.459141 1.2:-84190899 MS.gene029218:CDS
TAGTTGAATTCGTTGCTACT+TGG 0.466999 1.2:-84190933 MS.gene029218:CDS
ATTGTACGAACCGGAACGGT+TGG 0.469903 1.2:+84191159 None:intergenic
TTGTACGAACCGGAACGGTT+GGG 0.477965 1.2:+84191160 None:intergenic
TGAGCTATGGATTCCATAGC+TGG 0.482178 1.2:+84190886 None:intergenic
AGAAAGAGGTACCTGAGCTA+TGG 0.486986 1.2:+84190873 None:intergenic
GCAACGAATTCAACTAAAAC+CGG 0.491722 1.2:+84190940 None:intergenic
GTTGAGGTCACCGTATCCAT+TGG 0.493134 1.2:+84191207 None:intergenic
CGTATTGAAATCTGAGCGTC+CGG 0.497098 1.2:-84190959 MS.gene029218:CDS
TAAGGGAAGAGATGAGGATA+CGG 0.499243 1.2:+84191122 None:intergenic
TGACCGGTGAGAACGTGGTA+AGG 0.505991 1.2:+84191104 None:intergenic
AGAGTCTTTGCCGAGTTGAC+CGG 0.508220 1.2:+84191088 None:intergenic
TATACTCTTCAATTAGCTGC+GGG 0.511786 1.2:+84189307 None:intergenic
GGGAGGAATTTCCAGGAAGC+AGG 0.512537 1.2:-84189245 MS.gene029218:CDS
CCGCAACTCACTGTAAACTT+AGG 0.512897 1.2:+84191018 None:intergenic
AATCAATGAAAGCCAGTTCA+AGG 0.512971 1.2:-84190986 MS.gene029218:CDS
TTCCCTTACCACGTTCTCAC+CGG 0.519028 1.2:-84191107 MS.gene029218:CDS
TACAGTGAGTTGCGGTATCA+CGG 0.521048 1.2:-84191010 MS.gene029218:CDS
AGCTATGGAATCCATAGCTC+AGG 0.524162 1.2:-84190884 MS.gene029218:intron
CACGTTCTCACCGGTCAACT+CGG 0.532357 1.2:-84191098 MS.gene029218:CDS
TGAGGATACGGAGATTGAAG+AGG 0.544293 1.2:+84191134 None:intergenic
CGGACGCTCAGATTTCAATA+CGG 0.547344 1.2:+84190960 None:intergenic
CCATAGCTGGAGTGATCAAA+CGG 0.549337 1.2:+84190899 None:intergenic
GAAGAGGTAATTGTACGAAC+CGG 0.550130 1.2:+84191150 None:intergenic
CCTAAGTTTACAGTGAGTTG+CGG 0.570949 1.2:-84191018 MS.gene029218:CDS
TCATTGAAATCCAATGGATA+CGG 0.572041 1.2:-84191217 None:intergenic
ACGTGGTAAGGGAAGAGATG+AGG 0.572348 1.2:+84191116 None:intergenic
ACCCTGATACTCTTCAAGAA+CGG 0.577296 1.2:-84189267 MS.gene029218:CDS
TTCTTGAAGAGTATCAGGGT+TGG 0.579923 1.2:+84189270 None:intergenic
CCCGTTCTTGAAGAGTATCA+GGG 0.580271 1.2:+84189266 None:intergenic
TTTCCAGGAAGCAGGAAGGA+AGG 0.591083 1.2:-84189237 MS.gene029218:CDS
GACCGGTGAGAACGTGGTAA+GGG 0.599839 1.2:+84191105 None:intergenic
CGAGTTGACCGGTGAGAACG+TGG 0.605237 1.2:+84191099 None:intergenic
GAATTCGTTGCTACTTGGTG+CGG 0.606167 1.2:-84190928 MS.gene029218:CDS
TTATACTCTTCAATTAGCTG+CGG 0.611346 1.2:+84189306 None:intergenic
AGTGAGCGAAGCTGAAGTTG+AGG 0.632954 1.2:+84191191 None:intergenic
GGAATTTCCAGGAAGCAGGA+AGG 0.646284 1.2:-84189241 MS.gene029218:CDS
GGTAATTGTACGAACCGGAA+CGG 0.669877 1.2:+84191155 None:intergenic
GAAGGAAGGTGCAATTACAA+AGG 0.680704 1.2:-84189223 None:intergenic
GCTGGAGTGATCAAACGGCA+AGG 0.683277 1.2:+84190904 None:intergenic
CCTGATACTCTTCAAGAACG+GGG 0.694186 1.2:-84189265 MS.gene029218:CDS
GATACTCTTCAAGAACGGGG+AGG 0.730377 1.2:-84189262 MS.gene029218:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATAGATAGTTATTG+AGG - chr1.2:84190875-84190894 MS.gene029218:intron 15.0%
!!! CTTCAATTTTATTAAGAAAA+AGG - chr1.2:84190571-84190590 MS.gene029218:intron 15.0%
!! TTTCAAATTATTAGTTGTGT+CGG - chr1.2:84190233-84190252 MS.gene029218:intron 20.0%
!!! ACCTCTAAAATCATTTATAT+TGG - chr1.2:84189774-84189793 MS.gene029218:intron 20.0%
!!! ACTTTTTATTTTGTTTTTGC+CGG - chr1.2:84189587-84189606 MS.gene029218:intron 20.0%
!!! ATTGAAGAGTATAAAGTTTA+TGG - chr1.2:84191131-84191150 MS.gene029218:CDS 20.0%
!!! CCTCTAAAATCATTTATATT+GGG - chr1.2:84189775-84189794 MS.gene029218:intron 20.0%
! TGAAAATTATGTGATCTTTC+AGG - chr1.2:84190019-84190038 MS.gene029218:intron 25.0%
! TTAAATCAGACCATCAATTT+GGG + chr1.2:84190621-84190640 None:intergenic 25.0%
!! AATGTAAATTTTTGTGTGTG+GGG - chr1.2:84189892-84189911 MS.gene029218:intron 25.0%
!! ACAATGTAAATTTTTGTGTG+TGG - chr1.2:84189890-84189909 MS.gene029218:intron 25.0%
!! CAATGTAAATTTTTGTGTGT+GGG - chr1.2:84189891-84189910 MS.gene029218:intron 25.0%
!! CCCAATATAAATGATTTTAG+AGG + chr1.2:84189778-84189797 None:intergenic 25.0%
!!! CTTTAATTTGCAAATGATGT+CGG + chr1.2:84190923-84190942 None:intergenic 25.0%
!!! CTTTTTTTAAACTCAGTATC+CGG + chr1.2:84189609-84189628 None:intergenic 25.0%
!!! GTTAGTCGTTTATCTTTTTT+AGG - chr1.2:84190796-84190815 MS.gene029218:intron 25.0%
AAAGTTAGAAAGAGAGAAAG+AGG + chr1.2:84189572-84189591 None:intergenic 30.0%
AAATCATTTATATTGGGCTG+CGG - chr1.2:84189781-84189800 MS.gene029218:intron 30.0%
AACAAAATGTCTTAAGCTTC+TGG - chr1.2:84190107-84190126 MS.gene029218:intron 30.0%
ACTCTCATACATTATATTGC+AGG - chr1.2:84191052-84191071 MS.gene029218:CDS 30.0%
AGCTATTCTTAAACGTTCTT+TGG - chr1.2:84191005-84191024 MS.gene029218:CDS 30.0%
ATTATCATTCATACGAATGC+AGG - chr1.2:84190826-84190845 MS.gene029218:intron 30.0%
CATGCAATTCACTGTTTAAT+TGG - chr1.2:84189672-84189691 MS.gene029218:intron 30.0%
CTTAAATCAGACCATCAATT+TGG + chr1.2:84190622-84190641 None:intergenic 30.0%
GCTATTCTTAAACGTTCTTT+GGG - chr1.2:84191006-84191025 MS.gene029218:CDS 30.0%
TAGTCTACAATCATACTACA+AGG + chr1.2:84190061-84190080 None:intergenic 30.0%
TTATACTCTTCAATTAGCTG+CGG + chr1.2:84191125-84191144 None:intergenic 30.0%
TTCAGTCTAATTACAAGTGT+CGG + chr1.2:84190202-84190221 None:intergenic 30.0%
! AGACTATAACACCTCTTTTT+GGG - chr1.2:84189842-84189861 MS.gene029218:intron 30.0%
! ATGTAAATTTTTGTGTGTGG+GGG - chr1.2:84189893-84189912 MS.gene029218:intron 30.0%
! ATGTTTCTATCTTCGATTCA+TGG - chr1.2:84189931-84189950 MS.gene029218:intron 30.0%
! CAAATTGATGGTCTGATTTA+AGG - chr1.2:84190620-84190639 MS.gene029218:intron 30.0%
! TAGACTATAACACCTCTTTT+TGG - chr1.2:84189841-84189860 MS.gene029218:intron 30.0%
! TGATATGATATTACTAGCCT+AGG - chr1.2:84190982-84191001 MS.gene029218:CDS 30.0%
AACGTTTAAGAATAGCTCCT+AGG + chr1.2:84191002-84191021 None:intergenic 35.0%
AATCAATGAAAGCCAGTTCA+AGG - chr1.2:84189442-84189461 MS.gene029218:intron 35.0%
ACGTTAGAAGAATGACTTTG+AGG - chr1.2:84190344-84190363 MS.gene029218:intron 35.0%
AGTACTAATAAGCCTCTGTT+TGG + chr1.2:84190769-84190788 None:intergenic 35.0%
CTGTGCGTAGATTTAAATTG+CGG - chr1.2:84189702-84189721 MS.gene029218:intron 35.0%
GCAACGAATTCAACTAAAAC+CGG + chr1.2:84189491-84189510 None:intergenic 35.0%
TAATAAGCCTCTGTTTGGTA+TGG + chr1.2:84190764-84190783 None:intergenic 35.0%
TAGTTGAATTCGTTGCTACT+TGG - chr1.2:84189495-84189514 MS.gene029218:intron 35.0%
TATACTCTTCAATTAGCTGC+GGG + chr1.2:84191124-84191143 None:intergenic 35.0%
TTGTCCAAAACCCAAATTGA+TGG - chr1.2:84190608-84190627 MS.gene029218:intron 35.0%
! GACTATAACACCTCTTTTTG+GGG - chr1.2:84189843-84189862 MS.gene029218:intron 35.0%
! GCAAATTCAACAGCATTTTG+CGG + chr1.2:84189744-84189763 None:intergenic 35.0%
!!! AATTTGGGTTTTGGACAAGA+GGG + chr1.2:84190606-84190625 None:intergenic 35.0%
AAGCCTATGAAACACGGATA+CGG + chr1.2:84190294-84190313 None:intergenic 40.0%
AAGTCATTCTTCTAACGTCG+CGG + chr1.2:84190342-84190361 None:intergenic 40.0%
ACCCTGATACTCTTCAAGAA+CGG - chr1.2:84191161-84191180 MS.gene029218:CDS 40.0%
CCTAAGTTTACAGTGAGTTG+CGG - chr1.2:84189410-84189429 MS.gene029218:intron 40.0%
GAAGAGGTAATTGTACGAAC+CGG + chr1.2:84189281-84189300 None:intergenic 40.0%
GGTGTGTTAGCATTCATGAT+AGG - chr1.2:84190641-84190660 MS.gene029218:intron 40.0%
TAAGGGAAGAGATGAGGATA+CGG + chr1.2:84189309-84189328 None:intergenic 40.0%
TAGCATTCATGATAGGATGC+CGG - chr1.2:84190648-84190667 MS.gene029218:intron 40.0%
TCAATACGGTTTCCTTGAAC+TGG + chr1.2:84189457-84189476 None:intergenic 40.0%
TCTTCGATTCATGGTACATG+TGG - chr1.2:84189940-84189959 MS.gene029218:intron 40.0%
TGCTGTTGAATTTGCAGTAG+TGG - chr1.2:84189749-84189768 MS.gene029218:intron 40.0%
TTATGCAACACCCCAAAAAG+AGG + chr1.2:84189856-84189875 None:intergenic 40.0%
!! CAGACCATCAATTTGGGTTT+TGG + chr1.2:84190615-84190634 None:intergenic 40.0%
!! GCAAATGATGTCGGCTTTAA+GGG + chr1.2:84190914-84190933 None:intergenic 40.0%
!! GCTTTAAGGGTAGAATCTCA+GGG + chr1.2:84190901-84190920 None:intergenic 40.0%
!! TGCAAATGATGTCGGCTTTA+AGG + chr1.2:84190915-84190934 None:intergenic 40.0%
!! TTCTTGAAGAGTATCAGGGT+TGG + chr1.2:84191161-84191180 None:intergenic 40.0%
!!! CAATTTGGGTTTTGGACAAG+AGG + chr1.2:84190607-84190626 None:intergenic 40.0%
ACATGTGGATTTCACTCGAC+AGG - chr1.2:84189955-84189974 MS.gene029218:intron 45.0%
AGCATTCATGATAGGATGCC+GGG - chr1.2:84190649-84190668 MS.gene029218:intron 45.0%
AGCTATGGAATCCATAGCTC+AGG - chr1.2:84189544-84189563 MS.gene029218:intron 45.0%
ATCCGTGTTTCATAGGCTTC+TGG - chr1.2:84190295-84190314 MS.gene029218:intron 45.0%
ATGAAACACGGATACGGACA+TGG + chr1.2:84190288-84190307 None:intergenic 45.0%
ATTAGCGTTTGCTTGCGAGT+TGG - chr1.2:84190411-84190430 MS.gene029218:intron 45.0%
CAAATCAACACACAGTGACC+CGG + chr1.2:84190670-84190689 None:intergenic 45.0%
CACCAGAAGCCTATGAAACA+CGG + chr1.2:84190300-84190319 None:intergenic 45.0%
CCATAGCTGGAGTGATCAAA+CGG + chr1.2:84189532-84189551 None:intergenic 45.0%
CCCTGATACTCTTCAAGAAC+GGG - chr1.2:84191162-84191181 MS.gene029218:CDS 45.0%
CCGCAACTCACTGTAAACTT+AGG + chr1.2:84189413-84189432 None:intergenic 45.0%
CCTGATACTCTTCAAGAACG+GGG - chr1.2:84191163-84191182 MS.gene029218:CDS 45.0%
CGGACGCTCAGATTTCAATA+CGG + chr1.2:84189471-84189490 None:intergenic 45.0%
CGTATTGAAATCTGAGCGTC+CGG - chr1.2:84189469-84189488 MS.gene029218:intron 45.0%
GGTAATTGTACGAACCGGAA+CGG + chr1.2:84189276-84189295 None:intergenic 45.0%
TACAGTGAGTTGCGGTATCA+CGG - chr1.2:84189418-84189437 MS.gene029218:intron 45.0%
TGAGCTATGGATTCCATAGC+TGG + chr1.2:84189545-84189564 None:intergenic 45.0%
TGAGGATACGGAGATTGAAG+AGG + chr1.2:84189297-84189316 None:intergenic 45.0%
TGTCCGTATCCGTGTTTCAT+AGG - chr1.2:84190288-84190307 MS.gene029218:intron 45.0%
TTAGCGTTTGCTTGCGAGTT+GGG - chr1.2:84190412-84190431 MS.gene029218:intron 45.0%
TTTGAAGGGAGGACTTTGGA+GGG - chr1.2:84190436-84190455 MS.gene029218:intron 45.0%
! AAGCTTCTGGCTATGAAGCA+CGG - chr1.2:84190120-84190139 MS.gene029218:intron 45.0%
! GAATTCGTTGCTACTTGGTG+CGG - chr1.2:84189500-84189519 MS.gene029218:intron 45.0%
!! AGAAAGAGGTACCTGAGCTA+TGG + chr1.2:84189558-84189577 None:intergenic 45.0%
!! CCCGTTCTTGAAGAGTATCA+GGG + chr1.2:84191165-84191184 None:intergenic 45.0%
!! CTTTCAGGTGCTGCTTTGAT+TGG - chr1.2:84190034-84190053 MS.gene029218:intron 45.0%
!! GGCTTTAAGGGTAGAATCTC+AGG + chr1.2:84190902-84190921 None:intergenic 45.0%
!! GGGGTGTTGCATAAGACAAT+AGG - chr1.2:84189862-84189881 MS.gene029218:intron 45.0%
!! TTTTGAAGGGAGGACTTTGG+AGG - chr1.2:84190435-84190454 MS.gene029218:intron 45.0%
!!! CTTGCGAGTTGGGTTTTGAA+GGG - chr1.2:84190422-84190441 MS.gene029218:intron 45.0%
!!! ATTTGATATTTTTAAAAAAT+TGG - chr1.2:84190479-84190498 MS.gene029218:intron 5.0%
AAGAACGGGGAGGAATTTCC+AGG - chr1.2:84191176-84191195 MS.gene029218:CDS 50.0%
ACGGACACTCCTCGTATTAG+GGG - chr1.2:84190139-84190158 MS.gene029218:intron 50.0%
ACGTGGTAAGGGAAGAGATG+AGG + chr1.2:84189315-84189334 None:intergenic 50.0%
AGTGAGCGAAGCTGAAGTTG+AGG + chr1.2:84189240-84189259 None:intergenic 50.0%
ATTGTACGAACCGGAACGGT+TGG + chr1.2:84189272-84189291 None:intergenic 50.0%
CACGGACACTCCTCGTATTA+GGG - chr1.2:84190138-84190157 MS.gene029218:intron 50.0%
CCGTTTGATCACTCCAGCTA+TGG - chr1.2:84189529-84189548 MS.gene029218:intron 50.0%
GATACTCTTCAAGAACGGGG+AGG - chr1.2:84191166-84191185 MS.gene029218:CDS 50.0%
GCTACTGCCATACCAAACAG+AGG - chr1.2:84190754-84190773 MS.gene029218:intron 50.0%
GGAATTTCCAGGAAGCAGGA+AGG - chr1.2:84191187-84191206 MS.gene029218:CDS 50.0%
TCTAACTCTCCCAACCGTTC+CGG - chr1.2:84189259-84189278 MS.gene029218:CDS 50.0%
TTCCCTTACCACGTTCTCAC+CGG - chr1.2:84189321-84189340 MS.gene029218:CDS 50.0%
TTGTACGAACCGGAACGGTT+GGG + chr1.2:84189271-84189290 None:intergenic 50.0%
TTTCCAGGAAGCAGGAAGGA+AGG - chr1.2:84191191-84191210 MS.gene029218:CDS 50.0%
! AGAGTCTTTGCCGAGTTGAC+CGG + chr1.2:84189343-84189362 None:intergenic 50.0%
! CAGCATTTTGCGGTTTGCAG+CGG + chr1.2:84189734-84189753 None:intergenic 50.0%
!! CCCCGTTCTTGAAGAGTATC+AGG + chr1.2:84191166-84191185 None:intergenic 50.0%
!! GCTTGCGAGTTGGGTTTTGA+AGG - chr1.2:84190421-84190440 MS.gene029218:intron 50.0%
!! TACAAGTGTCGGTGTCGTGT+CGG + chr1.2:84190191-84190210 None:intergenic 50.0%
!!! GGGTTTTGAAGGGAGGACTT+TGG - chr1.2:84190432-84190451 MS.gene029218:intron 50.0%
!!! TGGGTTTTGGACAAGAGGGA+GGG + chr1.2:84190602-84190621 None:intergenic 50.0%
!!! TTGGGTTTTGGACAAGAGGG+AGG + chr1.2:84190603-84190622 None:intergenic 50.0%
CACGTTCTCACCGGTCAACT+CGG - chr1.2:84189330-84189349 MS.gene029218:CDS 55.0%
GACCGGTGAGAACGTGGTAA+GGG + chr1.2:84189326-84189345 None:intergenic 55.0%
GCACGGACACTCCTCGTATT+AGG - chr1.2:84190137-84190156 MS.gene029218:intron 55.0%
GCTGGAGTGATCAAACGGCA+AGG + chr1.2:84189527-84189546 None:intergenic 55.0%
GGGAGGAATTTCCAGGAAGC+AGG - chr1.2:84191183-84191202 MS.gene029218:CDS 55.0%
TGACCGGTGAGAACGTGGTA+AGG + chr1.2:84189327-84189346 None:intergenic 55.0%
!! TATTAGGGGTGTCCCGGTGT+CGG - chr1.2:84190153-84190172 MS.gene029218:intron 55.0%
!! TCCTCGTATTAGGGGTGTCC+CGG - chr1.2:84190147-84190166 MS.gene029218:intron 55.0%
!!! GCGAGTTGGGTTTTGAAGGG+AGG - chr1.2:84190425-84190444 MS.gene029218:intron 55.0%
ACCGGGACACCCCTAATACG+AGG + chr1.2:84190151-84190170 None:intergenic 60.0%
ACGGATACGGACATGGACGC+GGG + chr1.2:84190281-84190300 None:intergenic 60.0%
CACGACAAGTGTCCGACACC+GGG + chr1.2:84190168-84190187 None:intergenic 60.0%
CACGGATACGGACATGGACG+CGG + chr1.2:84190282-84190301 None:intergenic 60.0%
GCACCTTCCTTCCTGCTTCC+TGG + chr1.2:84191197-84191216 None:intergenic 60.0%
GCACGACAAGTGTCCGACAC+CGG + chr1.2:84190169-84190188 None:intergenic 60.0%
! CGAGTTGACCGGTGAGAACG+TGG + chr1.2:84189332-84189351 None:intergenic 60.0%
CATGGACGCGGGACACGACA+CGG + chr1.2:84190270-84190289 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 84189224 84191226 84189224 ID=MS.gene029218
chr1.2 mRNA 84189224 84191226 84189224 ID=MS.gene029218.t1;Parent=MS.gene029218
chr1.2 exon 84190885 84191226 84190885 ID=MS.gene029218.t1.exon1;Parent=MS.gene029218.t1
chr1.2 CDS 84190885 84191226 84190885 ID=cds.MS.gene029218.t1;Parent=MS.gene029218.t1
chr1.2 exon 84189224 84189376 84189224 ID=MS.gene029218.t1.exon2;Parent=MS.gene029218.t1
chr1.2 CDS 84189224 84189376 84189224 ID=cds.MS.gene029218.t1;Parent=MS.gene029218.t1
Gene Sequence

>MS.gene029218

ATGGATACGGTGACCTCAACTTCAGCTTCGCTCACTCTAACTCTCCCAACCGTTCCGGTTCGTACAATTACCTCTTCAATCTCCGTATCCTCATCTCTTCCCTTACCACGTTCTCACCGGTCAACTCGGCAAAGACTCTACTCTCTAAAAAGAAGCTTCTCGAATTCTTCTTCTTCTTATGCTGTTCCTAAGTTTACAGTGAGTTGCGGTATCACGGAAATCAATGAAAGCCAGTTCAAGGAAACCGTATTGAAATCTGAGCGTCCGGTTTTAGTTGAATTCGTTGCTACTTGGTGCGGTCCTTGCCGTTTGATCACTCCAGCTATGGAATCCATAGCTCAGGTACCTCTTTCTCTCTTTCTAACTTTTTATTTTGTTTTTGCCGGATACTGAGTTTAAAAAAAGTGTATTTTTTTTCTTAATTGAAACTAACTTTAATTGCATTATGCATGCAATTCACTGTTTAATTGGAACACTTCTGTGCGTAGATTTAAATTGCGGTTGTGTCCGCTGCAAACCGCAAAATGCTGTTGAATTTGCAGTAGTGGATACCTCTAAAATCATTTATATTGGGCTGCGGAACTTAATTGAAACTGAAAGCAATGTTTTTGTGTGCGTAGACTATAACACCTCTTTTTGGGGTGTTGCATAAGACAATAGGTGTTAACAATGTAAATTTTTGTGTGTGGGGGTCTTTTGTTTTGTGTATGTTTCTATCTTCGATTCATGGTACATGTGGATTTCACTCGACAGGAACAATGTTCTTTGTACTTGTTTGTGATAATAGATGTTTTGTGAAAATTATGTGATCTTTCAGGTGCTGCTTTGATTGGTCCTTGTAGTATGATTGTAGACTAAATCTCAATTTTGCAAATCACATTACAACAAAATGTCTTAAGCTTCTGGCTATGAAGCACGGACACTCCTCGTATTAGGGGTGTCCCGGTGTCGGACACTTGTCGTGCCGACACGACACCGACACTTGTAATTAGACTGAATTATGTGATTTTTTCAAATTATTAGTTGTGTCGGCGTGTCAGTGTCCGTGTCGTGTCCCGCGTCCATGTCCGTATCCGTGTTTCATAGGCTTCTGGTGATTGTTGCAAGTGCAATAACCGCGACGTTAGAAGAATGACTTTGAGGAAACAACATTTCTCTTTGTAATCTGTCTTCATTCTGTGATAAAAATTAGCGTTTGCTTGCGAGTTGGGTTTTGAAGGGAGGACTTTGGAGGGTTAAGTTTATATCTTATATTATTTGATATTTTTAAAAAATTGGATGAACATGATAAATGATCATGTAATACTTCAATCACACTTAATTTATTTTTAAAAATGTTTATAGTGTCTTCAATTTTATTAAGAAAAAGGTCTTTCCCTCCCTCTTGTCCAAAACCCAAATTGATGGTCTGATTTAAGGTGTGTTAGCATTCATGATAGGATGCCGGGTCACTGTGTGTTGATTTGAATCTATAATTTCGAGCGACGTAAGAAGTACAGTTAGTACTGATTGAAATGTGAGAAAAGCAATGCTACTGCCATACCAAACAGAGGCTTATTAGTACTGTGCTTTGTTAGTCGTTTATCTTTTTTAGGTTAATGCATTATCATTCATACGAATGCAGGACATGTAAGAGACATTAAGTGAAAAAAAATTAATAGATAGTTATTGAGGCCCTGAGATTCTACCCTTAAAGCCGACATCATTTGCAAATTAAAGTCAATAAAAAATAGAATGCTTTATAATTTGTAGAATGATTGATATGATATTACTAGCCTAGGAGCTATTCTTAAACGTTCTTTGGGATCTTAGTGTTTCTCAACTGAATACTCTCATACATTATATTGCAGGAATATGCAGACAGATTAACAGTTGTAAAGATTGATCATGATGCTAACCCGCAGCTAATTGAAGAGTATAAAGTTTATGGACTTCCAACCCTGATACTCTTCAAGAACGGGGAGGAATTTCCAGGAAGCAGGAAGGAAGGTGCAATTACAAAG
Protein sequence

>MS.gene029218.t1

MDTVTSTSASLTLTLPTVPVRTITSSISVSSSLPLPRSHRSTRQRLYSLKRSFSNSSSSYAVPKFTVSCGITEINESQFKETVLKSERPVLVEFVATWCGPCRLITPAMESIAQEYADRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGEEFPGSRKEGAITK