AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006160.t1 MTR_1g098660 91.558 154 7 4 1 154 1 148 1.44e-73 218
MS.gene006160.t1 MTR_3g089065 41.026 78 46 0 72 149 74 151 9.01e-21 84.3
MS.gene006160.t1 MTR_1g114290 38.462 78 48 0 74 151 76 153 2.44e-20 83.2
MS.gene006160.t1 MTR_2g079420 28.289 152 94 3 28 167 18 166 1.03e-19 81.6
MS.gene006160.t1 MTR_8g059015 35.802 81 52 0 72 152 77 157 2.15e-19 80.9
MS.gene006160.t1 MTR_1g023140 40.278 72 42 1 82 153 26 96 4.39e-18 75.9
MS.gene006160.t1 MTR_3g112410 37.500 72 44 1 82 153 26 96 4.58e-17 73.2
MS.gene006160.t1 MTR_7g009070 36.486 74 46 1 80 153 44 116 5.49e-17 73.2
MS.gene006160.t1 MTR_5g037950 38.095 63 38 1 83 145 40 101 1.03e-15 69.7
MS.gene006160.t1 MTR_4g085880 30.435 138 83 3 19 152 21 149 2.74e-15 69.7
MS.gene006160.t1 MTR_5g021180 38.272 81 46 3 71 148 14 93 2.91e-15 68.6
MS.gene006160.t1 MTR_1g087520 33.766 77 49 1 74 148 155 231 6.66e-13 65.5
MS.gene006160.t1 MTR_1g096790 36.735 98 55 3 74 168 34 127 7.31e-13 65.9
MS.gene006160.t1 MTR_5g037930 30.556 72 49 1 73 144 31 101 1.26e-12 61.6
MS.gene006160.t1 MTR_7g112040 35.616 73 45 1 75 145 151 223 2.28e-12 63.9
MS.gene006160.t1 MTR_5g084930 31.646 79 54 0 72 150 34 112 4.10e-12 63.5
MS.gene006160.t1 MTR_1g037680 36.585 82 50 2 63 143 76 156 8.69e-12 60.8
MS.gene006160.t1 MTR_2g010750 35.616 73 46 1 81 153 28 99 9.46e-12 59.3
MS.gene006160.t1 MTR_5g037890 32.258 62 41 1 83 144 39 99 1.43e-11 58.9
MS.gene006160.t1 MTR_2g021750 30.263 76 53 0 75 150 37 112 9.87e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006160.t1 AT1G76760 60.526 152 58 1 3 154 2 151 9.31e-56 173
MS.gene006160.t1 AT1G43560 63.704 135 42 4 25 154 14 146 4.39e-50 159
MS.gene006160.t1 AT1G50320 37.624 101 61 1 49 149 54 152 1.89e-19 80.9
MS.gene006160.t1 AT1G03680 35.443 79 51 0 74 152 82 160 3.57e-19 80.1
MS.gene006160.t1 AT3G15360 36.709 79 50 0 74 152 94 172 1.67e-17 76.3
MS.gene006160.t1 AT5G39950 37.838 74 45 1 80 153 43 115 4.21e-17 73.6
MS.gene006160.t1 AT3G51030 37.209 86 50 3 71 153 12 96 1.18e-15 69.3
MS.gene006160.t1 AT4G03520 29.787 94 63 1 74 167 88 178 1.44e-15 70.9
MS.gene006160.t1 AT1G45145 39.189 74 43 2 81 153 23 95 2.80e-14 65.9
MS.gene006160.t1 AT1G59730 30.693 101 65 3 66 166 26 121 3.62e-14 65.9
MS.gene006160.t1 AT2G15570 27.711 83 60 0 67 149 67 149 4.74e-13 63.9
MS.gene006160.t1 AT3G06730 34.532 139 81 4 11 142 17 152 5.70e-13 63.9
MS.gene006160.t1 AT2G15570 28.049 82 59 0 68 149 69 150 6.67e-13 63.5
MS.gene006160.t1 AT1G19730 29.870 77 54 0 78 154 22 98 7.75e-13 62.0
MS.gene006160.t1 AT1G69880 36.986 73 45 1 80 152 55 126 1.21e-12 62.4
MS.gene006160.t1 AT5G42980 38.571 70 41 2 81 149 23 91 1.52e-12 61.2
MS.gene006160.t1 AT3G56420 36.986 73 45 1 82 154 60 131 1.81e-12 62.0
MS.gene006160.t1 AT3G56420 36.986 73 45 1 82 154 60 131 1.81e-12 62.0
MS.gene006160.t1 AT3G56420 36.986 73 45 1 82 154 60 131 1.81e-12 62.0
MS.gene006160.t1 AT1G35620 36.000 100 57 3 72 168 38 133 1.93e-12 64.7
MS.gene006160.t1 AT1G04980 34.177 79 52 0 72 150 38 116 3.83e-12 63.5
MS.gene006160.t1 AT2G32920 35.556 90 54 2 64 152 31 117 2.43e-11 61.2
MS.gene006160.t1 AT3G17880 34.783 69 44 1 87 155 288 355 5.89e-11 60.1
MS.gene006160.t1 AT3G17880 34.783 69 44 1 87 155 295 362 7.43e-11 59.7
MS.gene006160.t1 AT2G47470 30.769 78 51 2 75 149 150 227 7.63e-11 59.7
MS.gene006160.t1 AT2G47470 30.769 78 51 2 75 149 150 227 8.60e-11 59.7
MS.gene006160.t1 AT2G47470 30.769 78 51 2 75 149 150 227 8.74e-11 59.7

Find 42 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAACTTTCATCATCTTTA+AGG 0.037363 1.4:+76708401 MS.gene006160:CDS
GTGTGGTCCTTGTCAGTTCA+TGG 0.318473 1.4:+76708269 MS.gene006160:CDS
TGCCTCAATGTTGTATTTGT+TGG 0.387952 1.4:-76708376 None:intergenic
TCAGTAAGTTAAAAGAATAT+CGG 0.393821 1.4:-76708594 None:intergenic
GAAACGAGGGCGGGAGGAAG+AGG 0.407611 1.4:-76706721 None:intergenic
CAGTAAGTTAAAAGAATATC+GGG 0.423152 1.4:-76708593 None:intergenic
CTCTTCTTCGTCCACACGTC+TGG 0.425949 1.4:+76706614 MS.gene006160:CDS
CAAATCATCAAAAGAGGAAA+AGG 0.443022 1.4:-76708035 None:intergenic
ACTCCTCGCCTTCTTCCAAT+TGG 0.450067 1.4:+76706684 MS.gene006160:CDS
TGCTGAGATGGAAGCGGCCA+TGG 0.463484 1.4:-76706559 None:intergenic
GTCAACAAATAGAGGCTTGT+CGG 0.480598 1.4:-76708068 None:intergenic
AGGAAGTAGGAAACGAGGGC+GGG 0.481188 1.4:-76706730 None:intergenic
GAAAGACGGCGAGTACCAAT+TGG 0.490211 1.4:-76706699 None:intergenic
CAACTTACAAAGCGATCAAA+GGG 0.495557 1.4:-76708432 None:intergenic
TCCTTAAAGATGATGAAAGT+TGG 0.497295 1.4:-76708402 None:intergenic
ACTTTCATCATCTTTAAGGA+TGG 0.499489 1.4:+76708405 MS.gene006160:CDS
AGAGGAAGACGCTGCTGAGA+TGG 0.502504 1.4:-76706571 None:intergenic
TGCAAGCAAATCATCAAAAG+AGG 0.504002 1.4:-76708041 None:intergenic
CCAACTTACAAAGCGATCAA+AGG 0.517391 1.4:-76708433 None:intergenic
GGCGAGGAGTTCGAAATTGA+AGG 0.521846 1.4:-76706671 None:intergenic
GCATAGAAGTCAACAAATAG+AGG 0.522542 1.4:-76708076 None:intergenic
AAGTAGGAAACGAGGGCGGG+AGG 0.525596 1.4:-76706727 None:intergenic
GGCGGGAGGAAGAGGAAAGA+CGG 0.525873 1.4:-76706713 None:intergenic
GTTCATGGTTCCTGTACTTG+AGG 0.555079 1.4:+76708284 MS.gene006160:CDS
GCGCTCACTTCCTCAAGTAC+AGG 0.556326 1.4:-76708294 None:intergenic
AGACGCTGCTGAGATGGAAG+CGG 0.566090 1.4:-76706565 None:intergenic
ACGAAGAAGAGTTCAAAGAA+TGG 0.574201 1.4:-76706602 None:intergenic
GAGGAAGTAGGAAACGAGGG+CGG 0.585576 1.4:-76706731 None:intergenic
GGCGAGTACCAATTGGAAGA+AGG 0.589024 1.4:-76706692 None:intergenic
TTGTATTTGTTGGCAATGCT+AGG 0.592667 1.4:-76708366 None:intergenic
TTGTTGACTTCTATGCAACC+TGG 0.598842 1.4:+76708083 MS.gene006160:CDS
TACTTGAGGAAGTGAGCGCT+CGG 0.618555 1.4:+76708298 MS.gene006160:CDS
TGTTACTTACGAGAGGAAGT+AGG 0.626215 1.4:-76706743 None:intergenic
AAGAAGAGTTCAAAGAATGG+AGG 0.637507 1.4:-76706599 None:intergenic
GTACCAATTGGAAGAAGGCG+AGG 0.648368 1.4:-76706687 None:intergenic
CAAAGAATGGAGGATAACAG+AGG 0.656938 1.4:-76706589 None:intergenic
CGAGAGGAAGTAGGAAACGA+GGG 0.659041 1.4:-76706734 None:intergenic
TGCCAACAAATACAACATTG+AGG 0.660640 1.4:+76708374 MS.gene006160:CDS
ACAGGAACCATGAACTGACA+AGG 0.685218 1.4:-76708276 None:intergenic
ACGAGAGGAAGTAGGAAACG+AGG 0.685474 1.4:-76706735 None:intergenic
AGTAAGTTAAAAGAATATCG+GGG 0.699651 1.4:-76708592 None:intergenic
TGATGAAGGTACCAGACGTG+TGG 0.715833 1.4:-76706625 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTCAATAAGTATATATA+TGG - chr1.4:76707295-76707314 None:intergenic 10.0%
!! AATTCAATAAGTATATATAT+GGG - chr1.4:76707294-76707313 None:intergenic 10.0%
!! TAATAAATTAGTGAATAACT+TGG - chr1.4:76706872-76706891 None:intergenic 15.0%
!! TAATAATGGTTATCATAAAA+CGG - chr1.4:76706805-76706824 None:intergenic 15.0%
!! TGAAGAAAGAATAATAATAA+TGG - chr1.4:76706819-76706838 None:intergenic 15.0%
!!! ATTTTATTTATACTTGTTGT+TGG + chr1.4:76706841-76706860 MS.gene006160:intron 15.0%
!!! TAATTTTTTTGGAATACAAA+AGG + chr1.4:76707586-76707605 MS.gene006160:intron 15.0%
!! AAAAAAATTAGCGTAAATTC+TGG - chr1.4:76707576-76707595 None:intergenic 20.0%
!! AAGGAGAAAAATAAAATAGT+TGG - chr1.4:76706776-76706795 None:intergenic 20.0%
!! AATAAGTATATATATGGGTT+TGG - chr1.4:76707289-76707308 None:intergenic 20.0%
!! ATCCAAATATAGGAAAAAAT+TGG - chr1.4:76707536-76707555 None:intergenic 20.0%
!! TCAGTAAGTTAAAAGAATAT+CGG - chr1.4:76708597-76708616 None:intergenic 20.0%
!! TTAATGATTTAAATCGAATG+CGG - chr1.4:76708508-76708527 None:intergenic 20.0%
!!! AGAATTTACGCTAATTTTTT+TGG + chr1.4:76707575-76707594 MS.gene006160:intron 20.0%
!!! ATCCAATTTTTTCCTATATT+TGG + chr1.4:76707531-76707550 MS.gene006160:intron 20.0%
! AAAACAATATCCAAAAATGC+TGG - chr1.4:76707990-76708009 None:intergenic 25.0%
! AACTACAAATTTACTAAACG+CGG + chr1.4:76707612-76707631 MS.gene006160:intron 25.0%
! AATCAAAAGGTCTAAGTTTA+GGG - chr1.4:76707133-76707152 None:intergenic 25.0%
! AATTTAAGCACTTATAAGCA+GGG + chr1.4:76707310-76707329 MS.gene006160:intron 25.0%
! ACTGTTAAACTGTTAAACTA+TGG + chr1.4:76707872-76707891 MS.gene006160:intron 25.0%
! AGTAAGTTAAAAGAATATCG+GGG - chr1.4:76708595-76708614 None:intergenic 25.0%
! CAGTAAGTTAAAAGAATATC+GGG - chr1.4:76708596-76708615 None:intergenic 25.0%
! TTCCAACACTATATATTTCA+CGG + chr1.4:76707053-76707072 MS.gene006160:intron 25.0%
!! TGAAATATATAGTGTTGGAA+GGG - chr1.4:76707053-76707072 None:intergenic 25.0%
ATGGTTATCATAAAACGGAA+AGG - chr1.4:76706800-76706819 None:intergenic 30.0%
ATTATGTCGTGTCAAAATTG+CGG + chr1.4:76707431-76707450 MS.gene006160:intron 30.0%
CAAATCATCAAAAGAGGAAA+AGG - chr1.4:76708038-76708057 None:intergenic 30.0%
CAATCAAAAGGTCTAAGTTT+AGG - chr1.4:76707134-76707153 None:intergenic 30.0%
CATGAAATATAACCAGCTAA+AGG - chr1.4:76708175-76708194 None:intergenic 30.0%
GAAAAACCATATTCCTTTCA+CGG - chr1.4:76707255-76707274 None:intergenic 30.0%
GAATTTAAGCACTTATAAGC+AGG + chr1.4:76707309-76707328 MS.gene006160:intron 30.0%
GGTAATATGATTCAGAAATG+AGG - chr1.4:76707032-76707051 None:intergenic 30.0%
TATCATAAAACGGAAAGGAA+AGG - chr1.4:76706795-76706814 None:intergenic 30.0%
TCCTTAAAGATGATGAAAGT+TGG - chr1.4:76708405-76708424 None:intergenic 30.0%
! ACTGTTAAACTATGGCTTTA+AGG + chr1.4:76707880-76707899 MS.gene006160:intron 30.0%
! ACTTTCATCATCTTTAAGGA+TGG + chr1.4:76708405-76708424 MS.gene006160:CDS 30.0%
! GTGAAATATATAGTGTTGGA+AGG - chr1.4:76707054-76707073 None:intergenic 30.0%
! TTTTGGATATTGTTTTCTGC+AGG + chr1.4:76707994-76708013 MS.gene006160:intron 30.0%
!! TGTAAGCAGGGTTTTAATAA+AGG - chr1.4:76707464-76707483 None:intergenic 30.0%
AAGAAGAGTTCAAAGAATGG+AGG - chr1.4:76706602-76706621 None:intergenic 35.0%
ACGAAGAAGAGTTCAAAGAA+TGG - chr1.4:76706605-76706624 None:intergenic 35.0%
AGAAGAAAATGGAAAACGCA+CGG - chr1.4:76708120-76708139 None:intergenic 35.0%
AGAATTTATGACGTGTAAGC+AGG - chr1.4:76707477-76707496 None:intergenic 35.0%
AGTGCACTTTCTAGATGTTT+GGG + chr1.4:76706938-76706957 MS.gene006160:intron 35.0%
ATCAGGGCAATCATCATAAA+TGG + chr1.4:76707680-76707699 MS.gene006160:intron 35.0%
ATGAAGAGAGGAGAAGAAAA+TGG - chr1.4:76708131-76708150 None:intergenic 35.0%
ATGATGAGTTCAAAATGAGC+AGG - chr1.4:76706988-76707007 None:intergenic 35.0%
ATTGCAAGCATGAATGAACA+TGG - chr1.4:76707914-76707933 None:intergenic 35.0%
CAACTTACAAAGCGATCAAA+GGG - chr1.4:76708435-76708454 None:intergenic 35.0%
CACTATATATTTCACGGACT+AGG + chr1.4:76707059-76707078 MS.gene006160:intron 35.0%
CCATCCACCAAAAATCTTTA+GGG + chr1.4:76707154-76707173 MS.gene006160:intron 35.0%
CTGCAATTGCAATCATGTTA+TGG + chr1.4:76707387-76707406 MS.gene006160:intron 35.0%
GAATTTATGACGTGTAAGCA+GGG - chr1.4:76707476-76707495 None:intergenic 35.0%
GCATAGAAGTCAACAAATAG+AGG - chr1.4:76708079-76708098 None:intergenic 35.0%
GCCAACTTTCATCATCTTTA+AGG + chr1.4:76708401-76708420 MS.gene006160:CDS 35.0%
GTCCGTGAAATATATAGTGT+TGG - chr1.4:76707058-76707077 None:intergenic 35.0%
TAGTGCACTTTCTAGATGTT+TGG + chr1.4:76706937-76706956 MS.gene006160:intron 35.0%
TGCAAGCAAATCATCAAAAG+AGG - chr1.4:76708044-76708063 None:intergenic 35.0%
TGCCAACAAATACAACATTG+AGG + chr1.4:76708374-76708393 MS.gene006160:CDS 35.0%
TGCCTCAATGTTGTATTTGT+TGG - chr1.4:76708379-76708398 None:intergenic 35.0%
TTGCAAGCATGAATGAACAT+GGG - chr1.4:76707913-76707932 None:intergenic 35.0%
! AACCAGACCCTAAAGATTTT+TGG - chr1.4:76707164-76707183 None:intergenic 35.0%
! AATTATCGCCTGATTTGATC+AGG + chr1.4:76707663-76707682 MS.gene006160:intron 35.0%
! ATTATCGCCTGATTTGATCA+GGG + chr1.4:76707664-76707683 MS.gene006160:intron 35.0%
! GATGATGATGATGATGATGA+AGG - chr1.4:76706642-76706661 None:intergenic 35.0%
! TTGTATTTGTTGGCAATGCT+AGG - chr1.4:76708369-76708388 None:intergenic 35.0%
!! AAAAATCTTTAGGGTCTGGT+TGG + chr1.4:76707163-76707182 MS.gene006160:intron 35.0%
!! TTAGTAGTGTTACTTACGAG+AGG - chr1.4:76706753-76706772 None:intergenic 35.0%
!!! GAAGCATTTTTTCCTTTAGC+TGG + chr1.4:76708160-76708179 MS.gene006160:intron 35.0%
!!! TAGGCTTTTGTTTTGGTGTT+TGG + chr1.4:76707078-76707097 MS.gene006160:intron 35.0%
AAACGATTTAGCAGCTAGAC+TGG - chr1.4:76707796-76707815 None:intergenic 40.0%
AACATCCCATAACAGTACCT+CGG + chr1.4:76707825-76707844 MS.gene006160:intron 40.0%
AACGATTTAGCAGCTAGACT+GGG - chr1.4:76707795-76707814 None:intergenic 40.0%
AAGAAAATGGAAAACGCACG+GGG - chr1.4:76708118-76708137 None:intergenic 40.0%
ACCATATTCCTTTCACGGTT+TGG - chr1.4:76707250-76707269 None:intergenic 40.0%
ATCTCGAGTATCAGAAGTAG+AGG - chr1.4:76707851-76707870 None:intergenic 40.0%
ATGATTGCCCTGATCAAATC+AGG - chr1.4:76707674-76707693 None:intergenic 40.0%
CAAAGAATGGAGGATAACAG+AGG - chr1.4:76706592-76706611 None:intergenic 40.0%
CACACCTATAAACCAGCATT+GGG - chr1.4:76708254-76708273 None:intergenic 40.0%
CCAACTTACAAAGCGATCAA+AGG - chr1.4:76708436-76708455 None:intergenic 40.0%
CCATATTCCTTTCACGGTTT+GGG - chr1.4:76707249-76707268 None:intergenic 40.0%
CCTTTGATCGCTTTGTAAGT+TGG + chr1.4:76708433-76708452 MS.gene006160:intron 40.0%
CGTAAATTCTGGCGATCAAT+GGG - chr1.4:76707565-76707584 None:intergenic 40.0%
GAAGAAAATGGAAAACGCAC+GGG - chr1.4:76708119-76708138 None:intergenic 40.0%
GAGTCATGTTTATCGTGAAG+CGG - chr1.4:76707760-76707779 None:intergenic 40.0%
GCCATCCACCAAAAATCTTT+AGG + chr1.4:76707153-76707172 MS.gene006160:intron 40.0%
GTAAATTCTGGCGATCAATG+GGG - chr1.4:76707564-76707583 None:intergenic 40.0%
GTCAACAAATAGAGGCTTGT+CGG - chr1.4:76708071-76708090 None:intergenic 40.0%
GTGCACTTTCTAGATGTTTG+GGG + chr1.4:76706939-76706958 MS.gene006160:intron 40.0%
TCTAATCAGTAACCCAATGC+TGG + chr1.4:76708239-76708258 MS.gene006160:intron 40.0%
TCTTCTCCTCTCTTCATGTT+GGG + chr1.4:76708134-76708153 MS.gene006160:intron 40.0%
TGGGGCAACAATCCAAATAT+AGG - chr1.4:76707546-76707565 None:intergenic 40.0%
TTCAAACCCAACATGAAGAG+AGG - chr1.4:76708143-76708162 None:intergenic 40.0%
TTCTTCTCCTCTCTTCATGT+TGG + chr1.4:76708133-76708152 MS.gene006160:intron 40.0%
! GTTGGTTCAAGTTCAACAGA+GGG + chr1.4:76707185-76707204 MS.gene006160:intron 40.0%
! TGAGAACTGACCAGCATTTT+TGG + chr1.4:76707977-76707996 MS.gene006160:intron 40.0%
! TGTTACTTACGAGAGGAAGT+AGG - chr1.4:76706746-76706765 None:intergenic 40.0%
! TTGGTTCAAGTTCAACAGAG+GGG + chr1.4:76707186-76707205 MS.gene006160:intron 40.0%
! TTTGGTGGATGGCAATCAAA+AGG - chr1.4:76707146-76707165 None:intergenic 40.0%
!! CACCAAAAATCTTTAGGGTC+TGG + chr1.4:76707159-76707178 MS.gene006160:intron 40.0%
!! CAGACCCTAAAGATTTTTGG+TGG - chr1.4:76707161-76707180 None:intergenic 40.0%
!! GTAACCCAATGCTGGTTTAT+AGG + chr1.4:76708247-76708266 MS.gene006160:intron 40.0%
!! TTGTTGACTTCTATGCAACC+TGG + chr1.4:76708083-76708102 MS.gene006160:CDS 40.0%
!!! CCCTAAAGATTTTTGGTGGA+TGG - chr1.4:76707157-76707176 None:intergenic 40.0%
AATCACGATCCTTGATGCTG+TGG + chr1.4:76707344-76707363 MS.gene006160:intron 45.0%
ACAGGAACCATGAACTGACA+AGG - chr1.4:76708279-76708298 None:intergenic 45.0%
CATGATTCTCCACAGCATCA+AGG - chr1.4:76707356-76707375 None:intergenic 45.0%
CCACACCTATAAACCAGCAT+TGG - chr1.4:76708255-76708274 None:intergenic 45.0%
CCCAAACCGTGAAAGGAATA+TGG + chr1.4:76707246-76707265 MS.gene006160:intron 45.0%
CTTGATGCTGTGGAGAATCA+TGG + chr1.4:76707354-76707373 MS.gene006160:intron 45.0%
GCGTAAATTCTGGCGATCAA+TGG - chr1.4:76707566-76707585 None:intergenic 45.0%
GTTCATGGTTCCTGTACTTG+AGG + chr1.4:76708284-76708303 MS.gene006160:CDS 45.0%
TAATTCGATGTTGACGCTGC+TGG - chr1.4:76707648-76707667 None:intergenic 45.0%
TGGAGAATCATGGTCAAACG+CGG + chr1.4:76707364-76707383 MS.gene006160:intron 45.0%
! GGTTGGTTCAAGTTCAACAG+AGG + chr1.4:76707184-76707203 MS.gene006160:intron 45.0%
!! ATCGTGAAGCGGATTTTGTG+CGG - chr1.4:76707749-76707768 None:intergenic 45.0%
!! ATCTTTAGGGTCTGGTTGGT+TGG + chr1.4:76707167-76707186 MS.gene006160:intron 45.0%
!! CCAATGCTGGTTTATAGGTG+TGG + chr1.4:76708252-76708271 MS.gene006160:intron 45.0%
!! GAGGTACTGTTATGGGATGT+TGG - chr1.4:76707826-76707845 None:intergenic 45.0%
!!! CACGGACTAGGCTTTTGTTT+TGG + chr1.4:76707071-76707090 MS.gene006160:intron 45.0%
ACGAGAGGAAGTAGGAAACG+AGG - chr1.4:76706738-76706757 None:intergenic 50.0%
ACTCCTCGCCTTCTTCCAAT+TGG + chr1.4:76706684-76706703 MS.gene006160:CDS 50.0%
AGTATCAGAAGTAGAGGCCG+AGG - chr1.4:76707845-76707864 None:intergenic 50.0%
CAACAGAGGGGAGCGAAAAT+GGG + chr1.4:76707198-76707217 MS.gene006160:intron 50.0%
CGAGAGGAAGTAGGAAACGA+GGG - chr1.4:76706737-76706756 None:intergenic 50.0%
CGGATGGTCTTTGCCATGAT+GGG - chr1.4:76707729-76707748 None:intergenic 50.0%
GAAAGACGGCGAGTACCAAT+TGG - chr1.4:76706702-76706721 None:intergenic 50.0%
GGATGGTCTTTGCCATGATG+GGG - chr1.4:76707728-76707747 None:intergenic 50.0%
GGCGAGGAGTTCGAAATTGA+AGG - chr1.4:76706674-76706693 None:intergenic 50.0%
GGCGAGTACCAATTGGAAGA+AGG - chr1.4:76706695-76706714 None:intergenic 50.0%
GTACCAATTGGAAGAAGGCG+AGG - chr1.4:76706690-76706709 None:intergenic 50.0%
GTGTGGTCCTTGTCAGTTCA+TGG + chr1.4:76708269-76708288 MS.gene006160:CDS 50.0%
TACTTGAGGAAGTGAGCGCT+CGG + chr1.4:76708298-76708317 MS.gene006160:CDS 50.0%
TCAACAGAGGGGAGCGAAAA+TGG + chr1.4:76707197-76707216 MS.gene006160:intron 50.0%
! AGGGGAGCGAAAATGGGTTT+AGG + chr1.4:76707204-76707223 MS.gene006160:intron 50.0%
! CCTTTCACGGTTTGGGTAGA+GGG - chr1.4:76707242-76707261 None:intergenic 50.0%
! CTTTCACGGTTTGGGTAGAG+GGG - chr1.4:76707241-76707260 None:intergenic 50.0%
! GGAGCGAAAATGGGTTTAGG+GGG + chr1.4:76707207-76707226 MS.gene006160:intron 50.0%
! GGGAGCGAAAATGGGTTTAG+GGG + chr1.4:76707206-76707225 MS.gene006160:intron 50.0%
! GGGGAGCGAAAATGGGTTTA+GGG + chr1.4:76707205-76707224 MS.gene006160:intron 50.0%
! GTCTTTGCCATGATGGGGAT+CGG - chr1.4:76707723-76707742 None:intergenic 50.0%
! TCCTTTCACGGTTTGGGTAG+AGG - chr1.4:76707243-76707262 None:intergenic 50.0%
! TTTCACGGTTTGGGTAGAGG+GGG - chr1.4:76707240-76707259 None:intergenic 50.0%
!! AGAGGCCGAGGTACTGTTAT+GGG - chr1.4:76707833-76707852 None:intergenic 50.0%
!! TAGAGGCCGAGGTACTGTTA+TGG - chr1.4:76707834-76707853 None:intergenic 50.0%
!! TGAAGCGGATTTTGTGCGGA+TGG - chr1.4:76707745-76707764 None:intergenic 50.0%
!! TGATGAAGGTACCAGACGTG+TGG - chr1.4:76706628-76706647 None:intergenic 50.0%
AGACGCTGCTGAGATGGAAG+CGG - chr1.4:76706568-76706587 None:intergenic 55.0%
AGAGGAAGACGCTGCTGAGA+TGG - chr1.4:76706574-76706593 None:intergenic 55.0%
AGGAAGTAGGAAACGAGGGC+GGG - chr1.4:76706733-76706752 None:intergenic 55.0%
CCCTCTACCCAAACCGTGAA+AGG + chr1.4:76707239-76707258 MS.gene006160:intron 55.0%
CTCTTCTTCGTCCACACGTC+TGG + chr1.4:76706614-76706633 MS.gene006160:CDS 55.0%
GAGGAAGTAGGAAACGAGGG+CGG - chr1.4:76706734-76706753 None:intergenic 55.0%
GCGCTCACTTCCTCAAGTAC+AGG - chr1.4:76708297-76708316 None:intergenic 55.0%
GCGGATGGTCTTTGCCATGA+TGG - chr1.4:76707730-76707749 None:intergenic 55.0%
! TTCTGCACCGATCCCCATCA+TGG + chr1.4:76707713-76707732 MS.gene006160:intron 55.0%
AAGTAGGAAACGAGGGCGGG+AGG - chr1.4:76706730-76706749 None:intergenic 60.0%
CGCACGGGGAGAAAGTTACC+AGG - chr1.4:76708104-76708123 None:intergenic 60.0%
GGCGGGAGGAAGAGGAAAGA+CGG - chr1.4:76706716-76706735 None:intergenic 60.0%
GAAACGAGGGCGGGAGGAAG+AGG - chr1.4:76706724-76706743 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 76706561 76708616 76706561 ID=MS.gene006160
chr1.4 mRNA 76706561 76708616 76706561 ID=MS.gene006160.t1;Parent=MS.gene006160
chr1.4 exon 76706561 76706755 76706561 ID=MS.gene006160.t1.exon1;Parent=MS.gene006160.t1
chr1.4 CDS 76706561 76706755 76706561 ID=cds.MS.gene006160.t1;Parent=MS.gene006160.t1
chr1.4 exon 76708016 76708104 76708016 ID=MS.gene006160.t1.exon2;Parent=MS.gene006160.t1
chr1.4 CDS 76708016 76708104 76708016 ID=cds.MS.gene006160.t1;Parent=MS.gene006160.t1
chr1.4 exon 76708269 76708446 76708269 ID=MS.gene006160.t1.exon3;Parent=MS.gene006160.t1
chr1.4 CDS 76708269 76708446 76708269 ID=cds.MS.gene006160.t1;Parent=MS.gene006160.t1
chr1.4 exon 76708572 76708616 76708572 ID=MS.gene006160.t1.exon4;Parent=MS.gene006160.t1
chr1.4 CDS 76708572 76708616 76708572 ID=cds.MS.gene006160.t1;Parent=MS.gene006160.t1
Gene Sequence

>MS.gene006160

ATGGCCGCTTCCATCTCAGCAGCGTCTTCCTCTGTTATCCTCCATTCTTTGAACTCTTCTTCGTCCACACGTCTGGTACCTTCATCATCATCATCATCATCATCTTCACACCTTCAATTTCGAACTCCTCGCCTTCTTCCAATTGGTACTCGCCGTCTTTCCTCTTCCTCCCGCCCTCGTTTCCTACTTCCTCTCGTAAGTAACACTACTAACCAACTATTTTATTTTTCTCCTTTCCTTTCCGTTTTATGATAACCATTATTATTATTCTTTCTTCATTATTTTATTTATACTTGTTGTTGGAATATCCAAGTTATTCACTAATTTATTACATAAATTATATTATTGCATCTGAAATTATTATATTAATCGCTGATAGTGCACTTTCTAGATGTTTGGGGCATTATGCTGAATATCACAATAACCTGCTCATTTTGAACTCATCATGAATCTTTGACTTGTTGTTTGCCTCATTTCTGAATCATATTACCCTTCCAACACTATATATTTCACGGACTAGGCTTTTGTTTTGGTGTTTGGTAACTGATTACATACATGCTCACAAGACTCCCTAAACTTAGACCTTTTGATTGCCATCCACCAAAAATCTTTAGGGTCTGGTTGGTTGGTTCAAGTTCAACAGAGGGGAGCGAAAATGGGTTTAGGGGGATTTTGACCCCCTCTACCCAAACCGTGAAAGGAATATGGTTTTTCAATGTGAATATCCAAACCCATATATATACTTATTGAATTTAAGCACTTATAAGCAGGGTTTTAACTAACAATCACGATCCTTGATGCTGTGGAGAATCATGGTCAAACGCGGCTGCAATTGCAATCATGTTATGGTTTTGACAACATCAACAAAACATTATGTCGTGTCAAAATTGCGGTCGCAGACCTTTATTAAAACCCTGCTTACACGTCATAAATTCTCATATGATCGAATAGACATTCAATTTAGCTGTTTATCCAATTTTTTCCTATATTTGGATTGTTGCCCCATTGATCGCCAGAATTTACGCTAATTTTTTTGGAATACAAAAGGACAAACTACAAATTTACTAAACGCGGAGTCAAAACTCCAGCAGCGTCAACATCGAATTATCGCCTGATTTGATCAGGGCAATCATCATAAATGGTCAGCTTGTTTTCTGCACCGATCCCCATCATGGCAAAGACCATCCGCACAAAATCCGCTTCACGATAAACATGACTCATTTTAATTTTTCCCAGTCTAGCTGCTAAATCGTTTCAACAAGCCAACATCCCATAACAGTACCTCGGCCTCTACTTCTGATACTCGAGATAACTGTTAAACTGTTAAACTATGGCTTTAAGGATGCTGACCCATGTTCATTCATGCTTGCAATCAAACTAGTTAAACTGAACTTTTCTGCTTCTGAAATAATTAATTGAGAACTGACCAGCATTTTTGGATATTGTTTTCTGCAGGTTCAAGCAAAGAAACAAACCTTTTCCTCTTTTGATGATTTGCTTGCAAACTCCGACAAGCCTCTATTTGTTGACTTCTATGCAACCTGGTAACTTTCTCCCCGTGCGTTTTCCATTTTCTTCTCCTCTCTTCATGTTGGGTTTGAAGCATTTTTTCCTTTAGCTGGTTATATTTCATGTTTAAACTATTTTAACTTGACTATTTATAAATTATATAATTACATCTAATCAGTAACCCAATGCTGGTTTATAGGTGTGGTCCTTGTCAGTTCATGGTTCCTGTACTTGAGGAAGTGAGCGCTCGGCTTCAAGATCAGATACAAATAGTTAAGATTGATACTGAGAAGTATCCTAGCATTGCCAACAAATACAACATTGAGGCATTGCCAACTTTCATCATCTTTAAGGATGGAAAACCCTTTGATCGCTTTGTAAGTTGGATTATATTTTCTTTCTGCTTCTTCTACAACGACTTAAAATTACATGACACCGCATTCGATTTAAATCATTAAATCGAATTTGATGTTTTCTATATTAACTGTATTTGCATTAGCAGTGTTACAAACTTGCAATGCTCCCCGATATTCTTTTAACTTACTGA
Protein sequence

>MS.gene006160.t1

MAASISAASSSVILHSLNSSSSTRLVPSSSSSSSSSHLQFRTPRLLPIGTRRLSSSSRPRFLLPLVQAKKQTFSSFDDLLANSDKPLFVDFYATWCGPCQFMVPVLEEVSARLQDQIQIVKIDTEKYPSIANKYNIEALPTFIIFKDGKPFDRFCYKLAMLPDILLTY