Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59222.t1 | XP_003592097.1 | 96.4 | 138 | 3 | 2 | 37 | 174 | 34 | 169 | 6.70E-65 | 256.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59222.t1 | Q6NPF9 | 73.6 | 121 | 32 | 0 | 53 | 173 | 51 | 171 | 4.5e-46 | 185.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59222.t1 | G7IBZ4 | 96.4 | 138 | 3 | 2 | 37 | 174 | 34 | 169 | 4.8e-65 | 256.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052155 | MS.gene59222 | 0.819084 | 1.40E-52 | -1.69E-46 |
| MS.gene05894 | MS.gene59222 | -0.818117 | 2.32E-52 | -1.69E-46 |
| MS.gene059778 | MS.gene59222 | -0.808877 | 2.50E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029218 | MS.gene59222 | PPI |
| MS.gene59222 | MS.gene071525 | PPI |
| MS.gene59222 | MS.gene23914 | PPI |
| MS.gene071526 | MS.gene59222 | PPI |
| MS.gene59222 | MS.gene029227 | PPI |
| MS.gene59222 | MS.gene071527 | PPI |
| MS.gene59222 | MS.gene029220 | PPI |
| MS.gene59222 | MS.gene071528 | PPI |
| MS.gene93136 | MS.gene59222 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59222.t1 | MTR_1g098660 | 93.678 | 174 | 6 | 4 | 1 | 174 | 1 | 169 | 1.54e-90 | 261 |
| MS.gene59222.t1 | MTR_1g114290 | 38.614 | 101 | 60 | 1 | 73 | 171 | 76 | 176 | 5.78e-24 | 92.8 |
| MS.gene59222.t1 | MTR_2g079420 | 30.323 | 155 | 96 | 2 | 25 | 167 | 16 | 170 | 2.02e-22 | 88.6 |
| MS.gene59222.t1 | MTR_3g089065 | 36.634 | 101 | 64 | 0 | 71 | 171 | 74 | 174 | 2.38e-22 | 88.6 |
| MS.gene59222.t1 | MTR_8g059015 | 36.082 | 97 | 62 | 0 | 71 | 167 | 77 | 173 | 6.17e-22 | 87.4 |
| MS.gene59222.t1 | MTR_1g023140 | 40.789 | 76 | 44 | 1 | 81 | 156 | 26 | 100 | 2.47e-19 | 79.3 |
| MS.gene59222.t1 | MTR_7g009070 | 35.955 | 89 | 55 | 2 | 79 | 167 | 44 | 130 | 9.32e-19 | 78.2 |
| MS.gene59222.t1 | MTR_3g112410 | 38.158 | 76 | 46 | 1 | 81 | 156 | 26 | 100 | 2.22e-18 | 76.6 |
| MS.gene59222.t1 | MTR_5g021180 | 35.644 | 101 | 60 | 3 | 70 | 167 | 14 | 112 | 2.83e-17 | 73.9 |
| MS.gene59222.t1 | MTR_4g085880 | 29.747 | 158 | 97 | 3 | 19 | 171 | 21 | 169 | 2.90e-17 | 75.1 |
| MS.gene59222.t1 | MTR_5g037950 | 38.095 | 63 | 38 | 1 | 82 | 144 | 40 | 101 | 1.27e-15 | 69.7 |
| MS.gene59222.t1 | MTR_2g010750 | 35.227 | 88 | 55 | 2 | 80 | 167 | 28 | 113 | 5.80e-14 | 65.5 |
| MS.gene59222.t1 | MTR_1g087520 | 31.915 | 94 | 61 | 2 | 73 | 163 | 155 | 248 | 9.78e-14 | 68.2 |
| MS.gene59222.t1 | MTR_1g087520 | 34.343 | 99 | 58 | 4 | 81 | 173 | 44 | 141 | 9.49e-11 | 59.7 |
| MS.gene59222.t1 | MTR_7g112040 | 33.333 | 93 | 59 | 2 | 74 | 163 | 151 | 243 | 1.15e-13 | 68.2 |
| MS.gene59222.t1 | MTR_7g112040 | 37.374 | 99 | 55 | 4 | 81 | 173 | 39 | 136 | 1.09e-11 | 62.4 |
| MS.gene59222.t1 | MTR_1g096790 | 36.735 | 98 | 57 | 3 | 73 | 167 | 34 | 129 | 1.27e-13 | 68.2 |
| MS.gene59222.t1 | MTR_5g084930 | 32.558 | 86 | 58 | 0 | 71 | 156 | 34 | 119 | 2.30e-13 | 67.4 |
| MS.gene59222.t1 | MTR_5g084930 | 29.808 | 104 | 66 | 3 | 73 | 170 | 166 | 268 | 1.43e-11 | 62.0 |
| MS.gene59222.t1 | MTR_2g079340 | 31.959 | 97 | 66 | 0 | 71 | 167 | 40 | 136 | 3.43e-13 | 64.3 |
| MS.gene59222.t1 | MTR_4g081380 | 34.066 | 91 | 58 | 2 | 81 | 171 | 30 | 118 | 1.11e-12 | 62.0 |
| MS.gene59222.t1 | MTR_5g037930 | 30.556 | 72 | 49 | 1 | 72 | 143 | 31 | 101 | 1.37e-12 | 62.0 |
| MS.gene59222.t1 | MTR_2g021750 | 31.325 | 83 | 57 | 0 | 74 | 156 | 37 | 119 | 4.43e-12 | 63.5 |
| MS.gene59222.t1 | MTR_2g079360 | 29.167 | 120 | 80 | 2 | 56 | 170 | 31 | 150 | 1.30e-11 | 59.7 |
| MS.gene59222.t1 | MTR_5g037890 | 32.258 | 62 | 41 | 1 | 82 | 143 | 39 | 99 | 1.75e-11 | 58.9 |
| MS.gene59222.t1 | MTR_1g037680 | 35.366 | 82 | 51 | 2 | 62 | 142 | 76 | 156 | 2.07e-11 | 60.1 |
| MS.gene59222.t1 | MTR_2g079400 | 29.897 | 97 | 68 | 0 | 74 | 170 | 41 | 137 | 5.94e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59222.t1 | AT1G76760 | 63.006 | 173 | 59 | 4 | 3 | 173 | 2 | 171 | 4.55e-66 | 199 |
| MS.gene59222.t1 | AT1G43560 | 64.516 | 155 | 49 | 3 | 25 | 174 | 14 | 167 | 7.41e-63 | 191 |
| MS.gene59222.t1 | AT1G50320 | 44.554 | 101 | 54 | 1 | 73 | 171 | 77 | 177 | 6.60e-26 | 97.8 |
| MS.gene59222.t1 | AT1G03680 | 35.714 | 98 | 63 | 0 | 73 | 170 | 82 | 179 | 2.03e-22 | 89.0 |
| MS.gene59222.t1 | AT3G15360 | 38.542 | 96 | 56 | 1 | 73 | 165 | 94 | 189 | 3.13e-20 | 83.6 |
| MS.gene59222.t1 | AT5G39950 | 35.227 | 88 | 55 | 2 | 79 | 166 | 43 | 128 | 1.67e-17 | 74.7 |
| MS.gene59222.t1 | AT4G03520 | 32.941 | 85 | 57 | 0 | 73 | 157 | 88 | 172 | 4.18e-17 | 75.1 |
| MS.gene59222.t1 | AT3G51030 | 41.026 | 78 | 44 | 2 | 80 | 156 | 24 | 100 | 7.42e-17 | 72.8 |
| MS.gene59222.t1 | AT1G59730 | 32.039 | 103 | 67 | 3 | 65 | 167 | 26 | 125 | 3.05e-16 | 71.6 |
| MS.gene59222.t1 | AT2G15570 | 28.302 | 106 | 76 | 0 | 66 | 171 | 67 | 172 | 4.77e-16 | 72.0 |
| MS.gene59222.t1 | AT2G15570 | 28.571 | 105 | 75 | 0 | 67 | 171 | 69 | 173 | 8.24e-16 | 71.6 |
| MS.gene59222.t1 | AT1G45145 | 35.294 | 85 | 53 | 2 | 82 | 166 | 26 | 108 | 2.33e-15 | 68.9 |
| MS.gene59222.t1 | AT1G19730 | 30.952 | 84 | 58 | 0 | 77 | 160 | 22 | 105 | 2.66e-14 | 66.2 |
| MS.gene59222.t1 | AT3G56420 | 36.250 | 80 | 50 | 1 | 81 | 160 | 60 | 138 | 8.52e-14 | 65.9 |
| MS.gene59222.t1 | AT3G56420 | 36.250 | 80 | 50 | 1 | 81 | 160 | 60 | 138 | 8.52e-14 | 65.9 |
| MS.gene59222.t1 | AT3G56420 | 36.250 | 80 | 50 | 1 | 81 | 160 | 60 | 138 | 8.52e-14 | 65.9 |
| MS.gene59222.t1 | AT1G04980 | 34.831 | 89 | 58 | 0 | 71 | 159 | 38 | 126 | 1.98e-13 | 67.4 |
| MS.gene59222.t1 | AT1G35620 | 37.500 | 96 | 55 | 3 | 71 | 163 | 38 | 131 | 3.36e-13 | 67.0 |
| MS.gene59222.t1 | AT5G42980 | 34.211 | 76 | 49 | 1 | 81 | 156 | 25 | 99 | 9.58e-13 | 62.0 |
| MS.gene59222.t1 | AT2G47470 | 29.032 | 93 | 63 | 2 | 74 | 163 | 150 | 242 | 1.04e-12 | 65.5 |
| MS.gene59222.t1 | AT2G47470 | 29.032 | 93 | 63 | 2 | 74 | 163 | 150 | 242 | 1.21e-12 | 65.1 |
| MS.gene59222.t1 | AT2G47470 | 29.032 | 93 | 63 | 2 | 74 | 163 | 150 | 242 | 1.30e-12 | 65.1 |
| MS.gene59222.t1 | AT1G69880 | 32.258 | 93 | 57 | 2 | 79 | 171 | 55 | 141 | 1.73e-12 | 62.0 |
| MS.gene59222.t1 | AT2G47470 | 29.167 | 96 | 65 | 2 | 74 | 166 | 150 | 245 | 1.76e-12 | 63.9 |
| MS.gene59222.t1 | AT2G32920 | 36.735 | 98 | 57 | 3 | 63 | 159 | 31 | 124 | 2.94e-12 | 64.3 |
| MS.gene59222.t1 | AT2G32920 | 30.337 | 89 | 59 | 2 | 73 | 159 | 170 | 257 | 8.63e-11 | 60.1 |
| MS.gene59222.t1 | AT3G17880 | 37.313 | 67 | 41 | 1 | 90 | 156 | 292 | 357 | 3.41e-12 | 63.9 |
| MS.gene59222.t1 | AT3G54960 | 32.258 | 93 | 62 | 1 | 71 | 163 | 105 | 196 | 3.51e-12 | 63.9 |
| MS.gene59222.t1 | AT3G17880 | 37.313 | 67 | 41 | 1 | 90 | 156 | 299 | 364 | 4.15e-12 | 63.5 |
| MS.gene59222.t1 | AT3G08710 | 33.708 | 89 | 55 | 2 | 71 | 156 | 30 | 117 | 6.31e-12 | 60.5 |
| MS.gene59222.t1 | AT3G08710 | 33.708 | 89 | 55 | 2 | 71 | 156 | 30 | 117 | 6.31e-12 | 60.5 |
| MS.gene59222.t1 | AT3G08710 | 33.708 | 89 | 55 | 2 | 71 | 156 | 30 | 117 | 6.31e-12 | 60.5 |
| MS.gene59222.t1 | AT5G16400 | 37.079 | 89 | 53 | 3 | 80 | 167 | 94 | 180 | 2.52e-11 | 59.7 |
| MS.gene59222.t1 | AT3G06730 | 31.944 | 144 | 92 | 5 | 30 | 170 | 43 | 183 | 2.94e-11 | 59.7 |
| MS.gene59222.t1 | AT3G54960 | 32.258 | 93 | 62 | 1 | 71 | 163 | 105 | 196 | 3.22e-11 | 61.2 |
| MS.gene59222.t1 | AT1G11530 | 29.885 | 87 | 59 | 2 | 81 | 167 | 22 | 106 | 6.36e-11 | 57.4 |
Find 40 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAACTTTCATCATCTTTA+AGG | 0.037363 | 1.3:+67825796 | MS.gene59222:CDS |
| GTGTGGTCCTTGTCAGTTCA+TGG | 0.318473 | 1.3:+67825664 | MS.gene59222:CDS |
| TGCCTCAATGTTGTATTTGT+TGG | 0.387952 | 1.3:-67825771 | None:intergenic |
| GAAACGAGGGCGGGAGGAAG+AGG | 0.407611 | 1.3:-67824242 | None:intergenic |
| CTCTTCTTCGTCCACACGTC+TGG | 0.425949 | 1.3:+67824138 | MS.gene59222:CDS |
| CAAATCATCAAAAGAGGAAA+AGG | 0.443022 | 1.3:-67825430 | None:intergenic |
| ACTCCTCGCCTTCTTCCAAT+TGG | 0.450067 | 1.3:+67824205 | MS.gene59222:CDS |
| TGCTGAGATGGAAGCGGCCA+TGG | 0.463484 | 1.3:-67824083 | None:intergenic |
| GCATAGAAGTCAACAAATAC+AGG | 0.470351 | 1.3:-67825471 | None:intergenic |
| AGGAAGTAGGAAACGAGGGC+GGG | 0.481188 | 1.3:-67824251 | None:intergenic |
| GAAAGACGGCGAGTACCAAT+TGG | 0.490211 | 1.3:-67824220 | None:intergenic |
| CAACTTACAAAGCGATCAAA+GGG | 0.495557 | 1.3:-67825827 | None:intergenic |
| GTCAACAAATACAGGCTTGT+CGG | 0.497227 | 1.3:-67825463 | None:intergenic |
| TCCTTAAAGATGATGAAAGT+TGG | 0.497295 | 1.3:-67825797 | None:intergenic |
| ACTTTCATCATCTTTAAGGA+TGG | 0.499489 | 1.3:+67825800 | MS.gene59222:CDS |
| AGAGGAAGACGCTGCTGAGA+TGG | 0.502504 | 1.3:-67824095 | None:intergenic |
| TGCAAGCAAATCATCAAAAG+AGG | 0.504002 | 1.3:-67825436 | None:intergenic |
| CCAACTTACAAAGCGATCAA+AGG | 0.517391 | 1.3:-67825828 | None:intergenic |
| GGCGAGGAGTTCGAAATTGA+AGG | 0.521846 | 1.3:-67824192 | None:intergenic |
| AAGTAGGAAACGAGGGCGGG+AGG | 0.525596 | 1.3:-67824248 | None:intergenic |
| GGCGGGAGGAAGAGGAAAGA+CGG | 0.525873 | 1.3:-67824234 | None:intergenic |
| GTTCATGGTTCCTGTACTTG+AGG | 0.555079 | 1.3:+67825679 | MS.gene59222:CDS |
| GCGCTCACTTCCTCAAGTAC+AGG | 0.556326 | 1.3:-67825689 | None:intergenic |
| AGACGCTGCTGAGATGGAAG+CGG | 0.566090 | 1.3:-67824089 | None:intergenic |
| ACGAAGAAGAGTTCAAAGAA+TGG | 0.574201 | 1.3:-67824126 | None:intergenic |
| GAGGAAGTAGGAAACGAGGG+CGG | 0.585576 | 1.3:-67824252 | None:intergenic |
| GGCGAGTACCAATTGGAAGA+AGG | 0.589024 | 1.3:-67824213 | None:intergenic |
| TTGTATTTGTTGGCAATGCT+AGG | 0.592667 | 1.3:-67825761 | None:intergenic |
| TTGTTGACTTCTATGCAACC+TGG | 0.598842 | 1.3:+67825478 | MS.gene59222:CDS |
| TTATTGCTTAACGTTGAGAG+TGG | 0.611598 | 1.3:-67826879 | None:intergenic |
| TACTTGAGGAAGTGAGCGCT+CGG | 0.618555 | 1.3:+67825693 | MS.gene59222:CDS |
| TGTTACTTACGAGAGGAAGT+AGG | 0.626215 | 1.3:-67824264 | None:intergenic |
| AAGAAGAGTTCAAAGAATGG+AGG | 0.632769 | 1.3:-67824123 | None:intergenic |
| GTACCAATTGGAAGAAGGCG+AGG | 0.648368 | 1.3:-67824208 | None:intergenic |
| CGAGAGGAAGTAGGAAACGA+GGG | 0.659041 | 1.3:-67824255 | None:intergenic |
| TGCCAACAAATACAACATTG+AGG | 0.660640 | 1.3:+67825769 | MS.gene59222:CDS |
| CAAAGAATGGAGGATTACAG+AGG | 0.663758 | 1.3:-67824113 | None:intergenic |
| ACAGGAACCATGAACTGACA+AGG | 0.685218 | 1.3:-67825671 | None:intergenic |
| ACGAGAGGAAGTAGGAAACG+AGG | 0.685474 | 1.3:-67824256 | None:intergenic |
| TGATGAAGGTACCAGACGTG+TGG | 0.715833 | 1.3:-67824149 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTCAATAAGTATATATA+TGG | - | chr1.3:67824692-67824711 | None:intergenic | 10.0% |
| !! | AATTCAATAAGTATATATAT+GGG | - | chr1.3:67824691-67824710 | None:intergenic | 10.0% |
| !! | TAATAATGGTTATTATAAAA+CGG | - | chr1.3:67824326-67824345 | None:intergenic | 10.0% |
| !! | AATATACAAAACATCAATTT+AGG | - | chr1.3:67826725-67826744 | None:intergenic | 15.0% |
| !! | TGAAGAAAGAATAATAATAA+TGG | - | chr1.3:67824340-67824359 | None:intergenic | 15.0% |
| !!! | ATTTTATTTATACTTGTTGT+TGG | + | chr1.3:67824362-67824381 | MS.gene59222:intron | 15.0% |
| !!! | TAATTTTTTTGGAATACAAA+AGG | + | chr1.3:67824983-67825002 | MS.gene59222:intron | 15.0% |
| !! | AAAAAAATTAGCGTAAATTC+TGG | - | chr1.3:67824973-67824992 | None:intergenic | 20.0% |
| !! | AAATGAATTAGTGAATAACT+TGG | - | chr1.3:67824393-67824412 | None:intergenic | 20.0% |
| !! | AACTACAAATTTACTAAATG+CGG | + | chr1.3:67825009-67825028 | MS.gene59222:intron | 20.0% |
| !! | AAGGAGAAAAATAAAATAGT+TGG | - | chr1.3:67824297-67824316 | None:intergenic | 20.0% |
| !! | AATAAGTATATATATGGGTT+TGG | - | chr1.3:67824686-67824705 | None:intergenic | 20.0% |
| !! | ACAATTTACAACAATAAGAA+AGG | - | chr1.3:67826539-67826558 | None:intergenic | 20.0% |
| !! | ATCCAAATATAGGAAAAAAT+TGG | - | chr1.3:67824933-67824952 | None:intergenic | 20.0% |
| !! | TCAGTAAGTTAAAAGAATAT+CGG | - | chr1.3:67825992-67826011 | None:intergenic | 20.0% |
| !!! | AAAATACACAGAAATCTTTT+CGG | + | chr1.3:67826156-67826175 | MS.gene59222:intron | 20.0% |
| !!! | ACCAAAATTTTATCTAACTT+GGG | - | chr1.3:67826801-67826820 | None:intergenic | 20.0% |
| !!! | AGAATTTACGCTAATTTTTT+TGG | + | chr1.3:67824972-67824991 | MS.gene59222:intron | 20.0% |
| !!! | ATCCAATTTTTTCCTATATT+TGG | + | chr1.3:67824928-67824947 | MS.gene59222:intron | 20.0% |
| !!! | CATGCATATAATTAATTTGT+CGG | + | chr1.3:67826616-67826635 | MS.gene59222:intron | 20.0% |
| !!! | TTATAGATAGTTAGTTTCAA+TGG | + | chr1.3:67826051-67826070 | MS.gene59222:intron | 20.0% |
| ! | AAAACAATATCCAAAAATGC+TGG | - | chr1.3:67825385-67825404 | None:intergenic | 25.0% |
| ! | AATCAAAAGGTCTAAGTTTA+GGG | - | chr1.3:67824560-67824579 | None:intergenic | 25.0% |
| ! | AATCAAATGCAGTATCATTA+TGG | - | chr1.3:67826121-67826140 | None:intergenic | 25.0% |
| ! | AATTTAAGCACTTATAAGCA+GGG | + | chr1.3:67824707-67824726 | MS.gene59222:intron | 25.0% |
| ! | ACTGTTAAACTGTTAAACTA+TGG | + | chr1.3:67825267-67825286 | MS.gene59222:intron | 25.0% |
| ! | ACTTCAACATAATGAAATTG+AGG | + | chr1.3:67826327-67826346 | MS.gene59222:intron | 25.0% |
| ! | AGTAAGTTAAAAGAATATCG+GGG | - | chr1.3:67825990-67826009 | None:intergenic | 25.0% |
| ! | ATCATGTCTTAACCAAAATT+AGG | - | chr1.3:67826266-67826285 | None:intergenic | 25.0% |
| ! | ATGGTTATTATAAAACGGAA+AGG | - | chr1.3:67824321-67824340 | None:intergenic | 25.0% |
| ! | CAGTAAGTTAAAAGAATATC+GGG | - | chr1.3:67825991-67826010 | None:intergenic | 25.0% |
| ! | TATTATAAAACGGAAAGGAA+AGG | - | chr1.3:67824316-67824335 | None:intergenic | 25.0% |
| ! | TCTACTTAAAAACAACCTTT+AGG | - | chr1.3:67826377-67826396 | None:intergenic | 25.0% |
| ! | TTAGAATGTAAAGAACCTAA+AGG | + | chr1.3:67826359-67826378 | MS.gene59222:intron | 25.0% |
| ! | TTCCAACACTATATATTTCA+CGG | + | chr1.3:67824480-67824499 | MS.gene59222:intron | 25.0% |
| !! | CCAAAATTTTATCTAACTTG+GGG | - | chr1.3:67826800-67826819 | None:intergenic | 25.0% |
| !! | GACCAAAATTTTATCTAACT+TGG | - | chr1.3:67826802-67826821 | None:intergenic | 25.0% |
| !! | TGAAATATATAGTGTTGGAA+GGG | - | chr1.3:67824480-67824499 | None:intergenic | 25.0% |
| !!! | TTTTGGTTAAGACATGATAT+TGG | + | chr1.3:67826268-67826287 | MS.gene59222:intron | 25.0% |
| ACAAAAGAAAACTAGGATGT+TGG | + | chr1.3:67826752-67826771 | MS.gene59222:intron | 30.0% | |
| ATGAAGAAAGGAGAAGAAAA+TGG | - | chr1.3:67825526-67825545 | None:intergenic | 30.0% | |
| ATTATGTCGTGTCAAAATTG+CGG | + | chr1.3:67824828-67824847 | MS.gene59222:intron | 30.0% | |
| CAAATCATCAAAAGAGGAAA+AGG | - | chr1.3:67825433-67825452 | None:intergenic | 30.0% | |
| CAATCAAAAGGTCTAAGTTT+AGG | - | chr1.3:67824561-67824580 | None:intergenic | 30.0% | |
| CATGAAAAATTGTGATGTCA+AGG | + | chr1.3:67826088-67826107 | MS.gene59222:intron | 30.0% | |
| CATGAAATATAACCAGCTAA+AGG | - | chr1.3:67825570-67825589 | None:intergenic | 30.0% | |
| CGTCATATTTGAAAAAGTGA+AGG | + | chr1.3:67826459-67826478 | MS.gene59222:intron | 30.0% | |
| CTTAACCAAAATTAGGAACT+AGG | - | chr1.3:67826259-67826278 | None:intergenic | 30.0% | |
| GAATTTAAGCACTTATAAGC+AGG | + | chr1.3:67824706-67824725 | MS.gene59222:intron | 30.0% | |
| GGTAATATGATTCAGAAATG+AGG | - | chr1.3:67824459-67824478 | None:intergenic | 30.0% | |
| TAAATCTCATCACAGTCATT+TGG | + | chr1.3:67826568-67826587 | MS.gene59222:intron | 30.0% | |
| TCCTTAAAGATGATGAAAGT+TGG | - | chr1.3:67825800-67825819 | None:intergenic | 30.0% | |
| TGACAAGACAAAAGAAAACT+AGG | + | chr1.3:67826745-67826764 | MS.gene59222:intron | 30.0% | |
| TTGAAAAAGTGAAGGAATGA+AGG | + | chr1.3:67826467-67826486 | MS.gene59222:intron | 30.0% | |
| ! | AATTTTATCTAACTTGGGGA+AGG | - | chr1.3:67826796-67826815 | None:intergenic | 30.0% |
| ! | ACTGTTAAACTATGGCTTTA+AGG | + | chr1.3:67825275-67825294 | MS.gene59222:intron | 30.0% |
| ! | ACTTTCATCATCTTTAAGGA+TGG | + | chr1.3:67825800-67825819 | MS.gene59222:CDS | 30.0% |
| ! | CCCCAAGTTAGATAAAATTT+TGG | + | chr1.3:67826797-67826816 | MS.gene59222:intron | 30.0% |
| ! | GTGAAATATATAGTGTTGGA+AGG | - | chr1.3:67824481-67824500 | None:intergenic | 30.0% |
| ! | TAAGTAGAAACTTTTGTCTG+TGG | + | chr1.3:67826389-67826408 | MS.gene59222:intron | 30.0% |
| ! | TTCTGTGTATTTTCTATGAC+TGG | - | chr1.3:67826149-67826168 | None:intergenic | 30.0% |
| ! | TTTTGGATATTGTTTTCTGC+AGG | + | chr1.3:67825389-67825408 | MS.gene59222:intron | 30.0% |
| !! | TGTAAGCAGGGTTTTAATAA+AGG | - | chr1.3:67824861-67824880 | None:intergenic | 30.0% |
| !! | TTTTGGTCTTCATGATTTTC+AGG | + | chr1.3:67826814-67826833 | MS.gene59222:intron | 30.0% |
| AAGAAGAGTTCAAAGAATGG+AGG | - | chr1.3:67824126-67824145 | None:intergenic | 35.0% | |
| ACGAAGAAGAGTTCAAAGAA+TGG | - | chr1.3:67824129-67824148 | None:intergenic | 35.0% | |
| AGAAGAAAATGGAAAACGCA+CGG | - | chr1.3:67825515-67825534 | None:intergenic | 35.0% | |
| AGAATTTATGACGTGTAAGC+AGG | - | chr1.3:67824874-67824893 | None:intergenic | 35.0% | |
| ATCAGGGCAATCATCATAAA+TGG | + | chr1.3:67825077-67825096 | MS.gene59222:intron | 35.0% | |
| CAACTTACAAAGCGATCAAA+GGG | - | chr1.3:67825830-67825849 | None:intergenic | 35.0% | |
| CACTATATATTTCACGGACT+AGG | + | chr1.3:67824486-67824505 | MS.gene59222:intron | 35.0% | |
| CTGCAATTGCAATCATGTTA+TGG | + | chr1.3:67824784-67824803 | MS.gene59222:intron | 35.0% | |
| GAATTTATGACGTGTAAGCA+GGG | - | chr1.3:67824873-67824892 | None:intergenic | 35.0% | |
| GCATAGAAGTCAACAAATAC+AGG | - | chr1.3:67825474-67825493 | None:intergenic | 35.0% | |
| GCCAACTTTCATCATCTTTA+AGG | + | chr1.3:67825796-67825815 | MS.gene59222:CDS | 35.0% | |
| GTCCGTGAAATATATAGTGT+TGG | - | chr1.3:67824485-67824504 | None:intergenic | 35.0% | |
| TCTTCTCCTTTCTTCATGTT+GGG | + | chr1.3:67825529-67825548 | MS.gene59222:intron | 35.0% | |
| TGCAAGCAAATCATCAAAAG+AGG | - | chr1.3:67825439-67825458 | None:intergenic | 35.0% | |
| TGCCAACAAATACAACATTG+AGG | + | chr1.3:67825769-67825788 | MS.gene59222:CDS | 35.0% | |
| TGCCTCAATGTTGTATTTGT+TGG | - | chr1.3:67825774-67825793 | None:intergenic | 35.0% | |
| TGTAGAAGACTTGTATGTAG+AGG | + | chr1.3:67826228-67826247 | MS.gene59222:intron | 35.0% | |
| TGTCTGTGGTCTATAACATA+TGG | + | chr1.3:67826403-67826422 | MS.gene59222:intron | 35.0% | |
| TTATTGCTTAACGTTGAGAG+TGG | - | chr1.3:67826882-67826901 | None:intergenic | 35.0% | |
| TTCAAACCCAACATGAAGAA+AGG | - | chr1.3:67825538-67825557 | None:intergenic | 35.0% | |
| TTCTTCTCCTTTCTTCATGT+TGG | + | chr1.3:67825528-67825547 | MS.gene59222:intron | 35.0% | |
| ! | AATCGCCTAGTTCCTAATTT+TGG | + | chr1.3:67826251-67826270 | MS.gene59222:intron | 35.0% |
| ! | AATTATCGCCTGATTTGATC+AGG | + | chr1.3:67825060-67825079 | MS.gene59222:intron | 35.0% |
| ! | ATTATCGCCTGATTTGATCA+GGG | + | chr1.3:67825061-67825080 | MS.gene59222:intron | 35.0% |
| ! | GATGATGATGATGATGATGA+AGG | - | chr1.3:67824166-67824185 | None:intergenic | 35.0% |
| ! | TTGTATTTGTTGGCAATGCT+AGG | - | chr1.3:67825764-67825783 | None:intergenic | 35.0% |
| !! | TTAGTAGTGTTACTTACGAG+AGG | - | chr1.3:67824274-67824293 | None:intergenic | 35.0% |
| !!! | GAAGCATTTTTTCCTTTAGC+TGG | + | chr1.3:67825555-67825574 | MS.gene59222:intron | 35.0% |
| !!! | TAGGCTTTTGTTTTGGTGTT+TGG | + | chr1.3:67824505-67824524 | MS.gene59222:intron | 35.0% |
| AAACGATTTAGCAGCTAGAC+TGG | - | chr1.3:67825191-67825210 | None:intergenic | 40.0% | |
| AACGATTTAGCAGCTAGACT+GGG | - | chr1.3:67825190-67825209 | None:intergenic | 40.0% | |
| AAGAAAATGGAAAACGCACG+GGG | - | chr1.3:67825513-67825532 | None:intergenic | 40.0% | |
| AGCCTTAGTAGTGTCTGTAA+AGG | - | chr1.3:67826302-67826321 | None:intergenic | 40.0% | |
| AGTGCAAGCATGAATGAACA+TGG | - | chr1.3:67825309-67825328 | None:intergenic | 40.0% | |
| ATCTCGAGTATCAGAAGTAG+AGG | - | chr1.3:67825246-67825265 | None:intergenic | 40.0% | |
| ATGATTGCCCTGATCAAATC+AGG | - | chr1.3:67825071-67825090 | None:intergenic | 40.0% | |
| CAAAGAATGGAGGATTACAG+AGG | - | chr1.3:67824116-67824135 | None:intergenic | 40.0% | |
| CAATTTAGGCTCACAATGCT+TGG | - | chr1.3:67826711-67826730 | None:intergenic | 40.0% | |
| CACACCTATAAACCAGCATT+GGG | - | chr1.3:67825649-67825668 | None:intergenic | 40.0% | |
| CACCTTTACAGACACTACTA+AGG | + | chr1.3:67826297-67826316 | MS.gene59222:intron | 40.0% | |
| CATATCAAGCACACAAGAAG+CGG | - | chr1.3:67826642-67826661 | None:intergenic | 40.0% | |
| CCAACTTACAAAGCGATCAA+AGG | - | chr1.3:67825831-67825850 | None:intergenic | 40.0% | |
| CCATCCACCAAAAACCTTTA+GGG | + | chr1.3:67824581-67824600 | MS.gene59222:intron | 40.0% | |
| CCTTTGATCGCTTTGTAAGT+TGG | + | chr1.3:67825828-67825847 | MS.gene59222:intron | 40.0% | |
| CGTAAATTCTGGCGATCAAT+GGG | - | chr1.3:67824962-67824981 | None:intergenic | 40.0% | |
| GAAGAAAATGGAAAACGCAC+GGG | - | chr1.3:67825514-67825533 | None:intergenic | 40.0% | |
| GAAGATAGCTTGACATAGTC+TGG | + | chr1.3:67826489-67826508 | MS.gene59222:intron | 40.0% | |
| GAGTCATGTTTATCGTGAAG+CGG | - | chr1.3:67825157-67825176 | None:intergenic | 40.0% | |
| GTAAATTCTGGCGATCAATG+GGG | - | chr1.3:67824961-67824980 | None:intergenic | 40.0% | |
| GTCAACAAATACAGGCTTGT+CGG | - | chr1.3:67825466-67825485 | None:intergenic | 40.0% | |
| GTGCAAGCATGAATGAACAT+GGG | - | chr1.3:67825308-67825327 | None:intergenic | 40.0% | |
| TCTAATCAGTAACCCAATGC+TGG | + | chr1.3:67825634-67825653 | MS.gene59222:intron | 40.0% | |
| TGGGGCAACAATCCAAATAT+AGG | - | chr1.3:67824943-67824962 | None:intergenic | 40.0% | |
| ! | AAATCTTTTCGGCTTCTTGC+TGG | + | chr1.3:67826167-67826186 | MS.gene59222:intron | 40.0% |
| ! | AACCAGACCCTAAAGGTTTT+TGG | - | chr1.3:67824591-67824610 | None:intergenic | 40.0% |
| ! | AATCTTTTCGGCTTCTTGCT+GGG | + | chr1.3:67826168-67826187 | MS.gene59222:intron | 40.0% |
| ! | GTTGGTTCAAGTTCAACAGA+GGG | + | chr1.3:67824612-67824631 | MS.gene59222:intron | 40.0% |
| ! | TGAGAACTGACCAGCATTTT+TGG | + | chr1.3:67825372-67825391 | MS.gene59222:intron | 40.0% |
| ! | TGTTACTTACGAGAGGAAGT+AGG | - | chr1.3:67824267-67824286 | None:intergenic | 40.0% |
| ! | TTGGTTCAAGTTCAACAGAG+GGG | + | chr1.3:67824613-67824632 | MS.gene59222:intron | 40.0% |
| ! | TTTGGTGGATGGCAATCAAA+AGG | - | chr1.3:67824573-67824592 | None:intergenic | 40.0% |
| !! | AAAAACCTTTAGGGTCTGGT+TGG | + | chr1.3:67824590-67824609 | MS.gene59222:intron | 40.0% |
| !! | AAATGGGTTTAGGGGGATTT+TGG | + | chr1.3:67824641-67824660 | MS.gene59222:intron | 40.0% |
| !! | AATGGGTTTAGGGGGATTTT+GGG | + | chr1.3:67824642-67824661 | MS.gene59222:intron | 40.0% |
| !! | GGTCTTCATGATTTTCAGGA+GGG | + | chr1.3:67826818-67826837 | MS.gene59222:intron | 40.0% |
| !! | GTAACCCAATGCTGGTTTAT+AGG | + | chr1.3:67825642-67825661 | MS.gene59222:intron | 40.0% |
| !! | TGGTCTTCATGATTTTCAGG+AGG | + | chr1.3:67826817-67826836 | MS.gene59222:intron | 40.0% |
| !! | TTGTTGACTTCTATGCAACC+TGG | + | chr1.3:67825478-67825497 | MS.gene59222:CDS | 40.0% |
| AACATCCCATAACAGTACCG+CGG | + | chr1.3:67825220-67825239 | MS.gene59222:intron | 45.0% | |
| AATCACGATCCTTGATGCTG+TGG | + | chr1.3:67824741-67824760 | MS.gene59222:intron | 45.0% | |
| ACAGGAACCATGAACTGACA+AGG | - | chr1.3:67825674-67825693 | None:intergenic | 45.0% | |
| ATAGTCTGGACTCTGGTGTT+TGG | + | chr1.3:67826503-67826522 | MS.gene59222:intron | 45.0% | |
| CATGATTCTCCACAGCATCA+AGG | - | chr1.3:67824753-67824772 | None:intergenic | 45.0% | |
| CCACACCTATAAACCAGCAT+TGG | - | chr1.3:67825650-67825669 | None:intergenic | 45.0% | |
| CTTGATGCTGTGGAGAATCA+TGG | + | chr1.3:67824751-67824770 | MS.gene59222:intron | 45.0% | |
| GCCATCCACCAAAAACCTTT+AGG | + | chr1.3:67824580-67824599 | MS.gene59222:intron | 45.0% | |
| GCGTAAATTCTGGCGATCAA+TGG | - | chr1.3:67824963-67824982 | None:intergenic | 45.0% | |
| GTTCATGGTTCCTGTACTTG+AGG | + | chr1.3:67825679-67825698 | MS.gene59222:CDS | 45.0% | |
| TAATTCGATGTTGACGCTGC+TGG | - | chr1.3:67825045-67825064 | None:intergenic | 45.0% | |
| TGGAGAATCATGGTCAAACG+CGG | + | chr1.3:67824761-67824780 | MS.gene59222:intron | 45.0% | |
| ! | ATGGGTTTAGGGGGATTTTG+GGG | + | chr1.3:67824643-67824662 | MS.gene59222:intron | 45.0% |
| ! | GGTTGGTTCAAGTTCAACAG+AGG | + | chr1.3:67824611-67824630 | MS.gene59222:intron | 45.0% |
| !! | ATCGTGAAGCGGATTTTGTG+CGG | - | chr1.3:67825146-67825165 | None:intergenic | 45.0% |
| !! | CACCAAAAACCTTTAGGGTC+TGG | + | chr1.3:67824586-67824605 | MS.gene59222:intron | 45.0% |
| !! | CAGACCCTAAAGGTTTTTGG+TGG | - | chr1.3:67824588-67824607 | None:intergenic | 45.0% |
| !! | CCAATGCTGGTTTATAGGTG+TGG | + | chr1.3:67825647-67825666 | MS.gene59222:intron | 45.0% |
| !!! | CACGGACTAGGCTTTTGTTT+TGG | + | chr1.3:67824498-67824517 | MS.gene59222:intron | 45.0% |
| !!! | CCCTAAAGGTTTTTGGTGGA+TGG | - | chr1.3:67824584-67824603 | None:intergenic | 45.0% |
| ACCAACCAACCAGACCCTAA+AGG | - | chr1.3:67824598-67824617 | None:intergenic | 50.0% | |
| ACGAGAGGAAGTAGGAAACG+AGG | - | chr1.3:67824259-67824278 | None:intergenic | 50.0% | |
| ACTCCTCGCCTTCTTCCAAT+TGG | + | chr1.3:67824205-67824224 | MS.gene59222:CDS | 50.0% | |
| AGTATCAGAAGTAGAGGCCG+CGG | - | chr1.3:67825240-67825259 | None:intergenic | 50.0% | |
| CAACAGAGGGGAGCGAAAAT+GGG | + | chr1.3:67824625-67824644 | MS.gene59222:intron | 50.0% | |
| CGAGAGGAAGTAGGAAACGA+GGG | - | chr1.3:67824258-67824277 | None:intergenic | 50.0% | |
| CGGATGGTCTTTGCCATGAT+GGG | - | chr1.3:67825126-67825145 | None:intergenic | 50.0% | |
| GAAAGACGGCGAGTACCAAT+TGG | - | chr1.3:67824223-67824242 | None:intergenic | 50.0% | |
| GCGGTACTGTTATGGGATGT+TGG | - | chr1.3:67825221-67825240 | None:intergenic | 50.0% | |
| GCTTGACATAGTCTGGACTC+TGG | + | chr1.3:67826496-67826515 | MS.gene59222:intron | 50.0% | |
| GGATGGTCTTTGCCATGATG+GGG | - | chr1.3:67825125-67825144 | None:intergenic | 50.0% | |
| GGCGAGGAGTTCGAAATTGA+AGG | - | chr1.3:67824195-67824214 | None:intergenic | 50.0% | |
| GGCGAGTACCAATTGGAAGA+AGG | - | chr1.3:67824216-67824235 | None:intergenic | 50.0% | |
| GTACCAATTGGAAGAAGGCG+AGG | - | chr1.3:67824211-67824230 | None:intergenic | 50.0% | |
| GTGTGGTCCTTGTCAGTTCA+TGG | + | chr1.3:67825664-67825683 | MS.gene59222:CDS | 50.0% | |
| TACTTGAGGAAGTGAGCGCT+CGG | + | chr1.3:67825693-67825712 | MS.gene59222:CDS | 50.0% | |
| TCAACAGAGGGGAGCGAAAA+TGG | + | chr1.3:67824624-67824643 | MS.gene59222:intron | 50.0% | |
| TTCTGCACCAATCCCCATCA+TGG | + | chr1.3:67825110-67825129 | MS.gene59222:intron | 50.0% | |
| ! | AGGGGAGCGAAAATGGGTTT+AGG | + | chr1.3:67824631-67824650 | MS.gene59222:intron | 50.0% |
| ! | GGAGCGAAAATGGGTTTAGG+GGG | + | chr1.3:67824634-67824653 | MS.gene59222:intron | 50.0% |
| ! | GGGAGCGAAAATGGGTTTAG+GGG | + | chr1.3:67824633-67824652 | MS.gene59222:intron | 50.0% |
| ! | GGGGAGCGAAAATGGGTTTA+GGG | + | chr1.3:67824632-67824651 | MS.gene59222:intron | 50.0% |
| ! | GTCTTTGCCATGATGGGGAT+TGG | - | chr1.3:67825120-67825139 | None:intergenic | 50.0% |
| !! | ACCTTTAGGGTCTGGTTGGT+TGG | + | chr1.3:67824594-67824613 | MS.gene59222:intron | 50.0% |
| !! | TGAAGCGGATTTTGTGCGGA+TGG | - | chr1.3:67825142-67825161 | None:intergenic | 50.0% |
| !! | TGATGAAGGTACCAGACGTG+TGG | - | chr1.3:67824152-67824171 | None:intergenic | 50.0% |
| AGACGCTGCTGAGATGGAAG+CGG | - | chr1.3:67824092-67824111 | None:intergenic | 55.0% | |
| AGAGGAAGACGCTGCTGAGA+TGG | - | chr1.3:67824098-67824117 | None:intergenic | 55.0% | |
| AGAGGCCGCGGTACTGTTAT+GGG | - | chr1.3:67825228-67825247 | None:intergenic | 55.0% | |
| AGGAAGTAGGAAACGAGGGC+GGG | - | chr1.3:67824254-67824273 | None:intergenic | 55.0% | |
| CTCTTCTTCGTCCACACGTC+TGG | + | chr1.3:67824138-67824157 | MS.gene59222:CDS | 55.0% | |
| GAGGAAGTAGGAAACGAGGG+CGG | - | chr1.3:67824255-67824274 | None:intergenic | 55.0% | |
| GCGCTCACTTCCTCAAGTAC+AGG | - | chr1.3:67825692-67825711 | None:intergenic | 55.0% | |
| GCGGATGGTCTTTGCCATGA+TGG | - | chr1.3:67825127-67825146 | None:intergenic | 55.0% | |
| TAGAGGCCGCGGTACTGTTA+TGG | - | chr1.3:67825229-67825248 | None:intergenic | 55.0% | |
| AAGTAGGAAACGAGGGCGGG+AGG | - | chr1.3:67824251-67824270 | None:intergenic | 60.0% | |
| CGCACGGGGAGAAAGTTACC+AGG | - | chr1.3:67825499-67825518 | None:intergenic | 60.0% | |
| GGCGGGAGGAAGAGGAAAGA+CGG | - | chr1.3:67824237-67824256 | None:intergenic | 60.0% | |
| GAAACGAGGGCGGGAGGAAG+AGG | - | chr1.3:67824245-67824264 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 67824085 | 67826901 | 67824085 | ID=MS.gene59222 |
| chr1.3 | mRNA | 67824085 | 67826901 | 67824085 | ID=MS.gene59222.t1;Parent=MS.gene59222 |
| chr1.3 | exon | 67824085 | 67824276 | 67824085 | ID=MS.gene59222.t1.exon1;Parent=MS.gene59222.t1 |
| chr1.3 | CDS | 67824085 | 67824276 | 67824085 | ID=cds.MS.gene59222.t1;Parent=MS.gene59222.t1 |
| chr1.3 | exon | 67825411 | 67825499 | 67825411 | ID=MS.gene59222.t1.exon2;Parent=MS.gene59222.t1 |
| chr1.3 | CDS | 67825411 | 67825499 | 67825411 | ID=cds.MS.gene59222.t1;Parent=MS.gene59222.t1 |
| chr1.3 | exon | 67825664 | 67825841 | 67825664 | ID=MS.gene59222.t1.exon3;Parent=MS.gene59222.t1 |
| chr1.3 | CDS | 67825664 | 67825841 | 67825664 | ID=cds.MS.gene59222.t1;Parent=MS.gene59222.t1 |
| chr1.3 | exon | 67826836 | 67826901 | 67826836 | ID=MS.gene59222.t1.exon4;Parent=MS.gene59222.t1 |
| chr1.3 | CDS | 67826836 | 67826901 | 67826836 | ID=cds.MS.gene59222.t1;Parent=MS.gene59222.t1 |
| Gene Sequence |
| Protein sequence |
