AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60687

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60687.t1 MTR_1g098660 94.186 172 6 4 1 171 1 169 1.03e-90 262
MS.gene60687.t1 MTR_1g114290 38.614 101 60 1 70 168 76 176 6.54e-24 92.8
MS.gene60687.t1 MTR_3g089065 36.634 101 64 0 68 168 74 174 2.45e-22 88.6
MS.gene60687.t1 MTR_8g059015 36.082 97 62 0 68 164 77 173 5.59e-22 87.4
MS.gene60687.t1 MTR_2g079420 31.387 137 82 2 40 164 34 170 1.78e-21 86.3
MS.gene60687.t1 MTR_1g023140 40.789 76 44 1 78 153 26 100 2.20e-19 79.3
MS.gene60687.t1 MTR_7g009070 35.955 89 55 2 76 164 44 130 1.02e-18 77.8
MS.gene60687.t1 MTR_3g112410 38.158 76 46 1 78 153 26 100 2.50e-18 76.3
MS.gene60687.t1 MTR_5g021180 35.644 101 60 3 67 164 14 112 2.97e-17 73.6
MS.gene60687.t1 MTR_4g085880 29.114 158 95 3 19 168 21 169 9.32e-17 73.9
MS.gene60687.t1 MTR_5g037950 38.095 63 38 1 79 141 40 101 1.32e-15 69.7
MS.gene60687.t1 MTR_2g010750 35.227 88 55 2 77 164 28 113 5.69e-14 65.5
MS.gene60687.t1 MTR_1g087520 32.258 93 60 2 71 160 156 248 9.78e-14 68.2
MS.gene60687.t1 MTR_1g087520 34.343 99 58 4 78 170 44 141 8.51e-11 59.7
MS.gene60687.t1 MTR_7g112040 33.333 93 59 2 71 160 151 243 1.11e-13 67.8
MS.gene60687.t1 MTR_7g112040 37.374 99 55 4 78 170 39 136 9.43e-12 62.4
MS.gene60687.t1 MTR_1g096790 36.735 98 57 3 70 164 34 129 1.30e-13 67.8
MS.gene60687.t1 MTR_5g084930 32.558 86 58 0 68 153 34 119 2.05e-13 67.4
MS.gene60687.t1 MTR_5g084930 29.808 104 66 3 70 167 166 268 1.32e-11 62.0
MS.gene60687.t1 MTR_2g079340 31.959 97 66 0 68 164 40 136 3.36e-13 64.3
MS.gene60687.t1 MTR_4g081380 34.066 91 58 2 78 168 30 118 1.10e-12 62.0
MS.gene60687.t1 MTR_5g037930 30.556 72 49 1 69 140 31 101 1.45e-12 61.6
MS.gene60687.t1 MTR_2g021750 31.325 83 57 0 71 153 37 119 4.24e-12 63.5
MS.gene60687.t1 MTR_2g079360 29.167 120 80 2 53 167 31 150 1.11e-11 60.1
MS.gene60687.t1 MTR_5g037890 32.258 62 41 1 79 140 39 99 1.94e-11 58.5
MS.gene60687.t1 MTR_1g037680 35.366 82 51 2 59 139 76 156 2.28e-11 59.7
MS.gene60687.t1 MTR_2g079400 29.897 97 68 0 71 167 41 137 5.52e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60687.t1 AT1G76760 63.372 172 57 4 3 170 2 171 9.43e-66 199
MS.gene60687.t1 AT1G43560 69.630 135 36 2 42 171 33 167 9.22e-62 188
MS.gene60687.t1 AT1G50320 44.554 101 54 1 70 168 77 177 7.53e-26 97.8
MS.gene60687.t1 AT1G03680 35.714 98 63 0 70 167 82 179 2.37e-22 88.6
MS.gene60687.t1 AT3G15360 38.542 96 56 1 70 162 94 189 3.33e-20 83.6
MS.gene60687.t1 AT5G39950 37.179 78 48 1 76 153 43 119 1.86e-17 74.7
MS.gene60687.t1 AT4G03520 30.526 95 66 0 70 164 88 182 4.33e-17 75.1
MS.gene60687.t1 AT3G51030 41.026 78 44 2 77 153 24 100 6.71e-17 72.8
MS.gene60687.t1 AT1G59730 32.039 103 67 3 62 164 26 125 2.98e-16 71.6
MS.gene60687.t1 AT2G15570 28.302 106 76 0 63 168 67 172 4.75e-16 72.0
MS.gene60687.t1 AT2G15570 28.571 105 75 0 64 168 69 173 7.00e-16 71.6
MS.gene60687.t1 AT1G45145 35.294 85 53 2 79 163 26 108 2.43e-15 68.9
MS.gene60687.t1 AT1G19730 30.952 84 58 0 74 157 22 105 2.50e-14 66.2
MS.gene60687.t1 AT3G56420 36.250 80 50 1 78 157 60 138 8.44e-14 65.5
MS.gene60687.t1 AT3G56420 36.250 80 50 1 78 157 60 138 8.44e-14 65.5
MS.gene60687.t1 AT3G56420 36.250 80 50 1 78 157 60 138 8.44e-14 65.5
MS.gene60687.t1 AT1G04980 34.831 89 58 0 68 156 38 126 1.72e-13 67.8
MS.gene60687.t1 AT1G35620 37.500 96 55 3 68 160 38 131 3.56e-13 66.6
MS.gene60687.t1 AT5G42980 34.211 76 49 1 78 153 25 99 1.04e-12 62.0
MS.gene60687.t1 AT2G47470 29.032 93 63 2 71 160 150 242 1.05e-12 65.1
MS.gene60687.t1 AT2G47470 29.032 93 63 2 71 160 150 242 1.33e-12 64.7
MS.gene60687.t1 AT2G47470 29.167 96 65 2 71 163 150 245 1.33e-12 64.7
MS.gene60687.t1 AT1G69880 32.258 93 57 2 76 168 55 141 1.69e-12 62.0
MS.gene60687.t1 AT2G47470 29.167 96 65 2 71 163 150 245 1.92e-12 63.9
MS.gene60687.t1 AT2G32920 35.052 97 60 1 60 156 31 124 2.83e-12 64.3
MS.gene60687.t1 AT2G32920 30.337 89 59 2 70 156 170 257 8.91e-11 59.7
MS.gene60687.t1 AT3G17880 37.313 67 41 1 87 153 292 357 3.39e-12 63.9
MS.gene60687.t1 AT3G17880 37.313 67 41 1 87 153 299 364 3.67e-12 63.5
MS.gene60687.t1 AT3G08710 33.708 89 55 2 68 153 30 117 5.78e-12 60.5
MS.gene60687.t1 AT3G08710 33.708 89 55 2 68 153 30 117 5.78e-12 60.5
MS.gene60687.t1 AT3G08710 33.708 89 55 2 68 153 30 117 5.78e-12 60.5
MS.gene60687.t1 AT3G54960 32.258 93 62 1 68 160 105 196 1.43e-11 62.0
MS.gene60687.t1 AT3G54960 32.258 93 62 1 68 160 105 196 2.56e-11 61.6
MS.gene60687.t1 AT5G16400 37.079 89 53 3 77 164 94 180 2.98e-11 59.7
MS.gene60687.t1 AT1G11530 29.885 87 59 2 78 164 22 106 6.42e-11 57.0
MS.gene60687.t1 AT4G04950 33.750 80 52 1 74 153 15 93 9.64e-11 59.7
MS.gene60687.t1 AT3G06730 30.769 143 93 4 28 167 44 183 9.81e-11 58.2

Find 41 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAACTTTCATCATCTTTA+AGG 0.037363 1.2:-70788654 MS.gene60687:CDS
GTGTGGTCCTTGTCAGTTCA+TGG 0.318473 1.2:-70788786 MS.gene60687:CDS
TGCCTCAATGTTGTATTTGT+TGG 0.387952 1.2:+70788679 None:intergenic
GAAACGAGGGCGGGAGGAAG+AGG 0.407611 1.2:+70790174 None:intergenic
CTCTTCTTCGTCCACACGTC+TGG 0.425949 1.2:-70790269 MS.gene60687:CDS
CAAATCATCAAAAGAGGAAA+AGG 0.443022 1.2:+70789020 None:intergenic
ACTCCTCGCCTTCTTCCAAT+TGG 0.450067 1.2:-70790211 MS.gene60687:CDS
TGCTGAGATGGAAGCGGCCA+TGG 0.463484 1.2:+70790324 None:intergenic
GCATAGAAGTCAACAAATAC+AGG 0.470351 1.2:+70788979 None:intergenic
AGGAAGTAGGAAACGAGGGC+GGG 0.481188 1.2:+70790165 None:intergenic
GAAAGACGGCGAGTACCAAT+TGG 0.490211 1.2:+70790196 None:intergenic
CAACTTACAAAGCGATCAAA+GGG 0.495557 1.2:+70788623 None:intergenic
GTCAACAAATACAGGCTTGT+CGG 0.497227 1.2:+70788987 None:intergenic
TCCTTAAAGATGATGAAAGT+TGG 0.497295 1.2:+70788653 None:intergenic
ACTTTCATCATCTTTAAGGA+TGG 0.499489 1.2:-70788650 MS.gene60687:CDS
AGAGGAAGACGCTGCTGAGA+TGG 0.502504 1.2:+70790312 None:intergenic
TGCAAGCAAATCATCAAAAG+AGG 0.504002 1.2:+70789014 None:intergenic
CCAACTTACAAAGCGATCAA+AGG 0.517391 1.2:+70788622 None:intergenic
GGCGAGGAGTTCGAAATTGA+AGG 0.521846 1.2:+70790224 None:intergenic
AAGTAGGAAACGAGGGCGGG+AGG 0.525596 1.2:+70790168 None:intergenic
GGCGGGAGGAAGAGGAAAGA+CGG 0.525873 1.2:+70790182 None:intergenic
GTTCATGGTTCCTGTACTTG+AGG 0.555079 1.2:-70788771 MS.gene60687:CDS
GCGCTCACTTCCTCAAGTAC+AGG 0.556326 1.2:+70788761 None:intergenic
AGACGCTGCTGAGATGGAAG+CGG 0.566090 1.2:+70790318 None:intergenic
TGTTACTTACGAGAGGAAGT+AGG 0.572136 1.2:+70790152 None:intergenic
ACGAAGAAGAGTTCAAAGAA+TGG 0.574201 1.2:+70790281 None:intergenic
GAGGAAGTAGGAAACGAGGG+CGG 0.585576 1.2:+70790164 None:intergenic
GGCGAGTACCAATTGGAAGA+AGG 0.589024 1.2:+70790203 None:intergenic
TTGTATTTGTTGGCAATGCT+AGG 0.592667 1.2:+70788689 None:intergenic
TTGTTGACTTCTATGCAACC+TGG 0.598842 1.2:-70788972 MS.gene60687:intron
TTATTGCTTAACGTTGAGAG+TGG 0.611598 1.2:+70787571 None:intergenic
TACTTGAGGAAGTGAGCGCT+CGG 0.618555 1.2:-70788757 MS.gene60687:CDS
AAGAAGAGTTCAAAGAATGG+AGG 0.632769 1.2:+70790284 None:intergenic
GTACCAATTGGAAGAAGGCG+AGG 0.648368 1.2:+70790208 None:intergenic
CGAGAGGAAGTAGGAAACGA+GGG 0.659041 1.2:+70790161 None:intergenic
TGCCAACAAATACAACATTG+AGG 0.660640 1.2:-70788681 MS.gene60687:CDS
CAAAGAATGGAGGATTACAG+AGG 0.663758 1.2:+70790294 None:intergenic
AGGTGTGAAGATGATGATGA+AGG 0.664286 1.2:+70790244 None:intergenic
ACAGGAACCATGAACTGACA+AGG 0.685218 1.2:+70788779 None:intergenic
ACGAGAGGAAGTAGGAAACG+AGG 0.685474 1.2:+70790160 None:intergenic
TGATGAAGGTACCAGACGTG+TGG 0.715833 1.2:+70790258 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAGAATAATAATAATAA+TGG + chr1.2:70787814-70787833 None:intergenic 10.0%
!! TAATAATGGTTATTATAAAA+CGG + chr1.2:70787800-70787819 None:intergenic 10.0%
!! AATATACAAAACATCAATTT+AGG + chr1.2:70790168-70790187 None:intergenic 15.0%
!! TAATAAATTAGTGAATAACT+TGG + chr1.2:70787870-70787889 None:intergenic 15.0%
!! TTAATGATTTAAATTGAATG+CGG + chr1.2:70789346-70789365 None:intergenic 15.0%
!!! ATTTTATTTATACTTGTTGT+TGG - chr1.2:70787839-70787858 MS.gene60687:intron 15.0%
!! AAAAAAATTAGCGTAAATTC+TGG + chr1.2:70788416-70788435 None:intergenic 20.0%
!! AAGGAGAAAAATAAAATAGT+TGG + chr1.2:70787771-70787790 None:intergenic 20.0%
!! ACAATTTACAACAATAAGAA+AGG + chr1.2:70789982-70790001 None:intergenic 20.0%
!! ATCCAAATATAGGAAAAAAT+TGG + chr1.2:70788376-70788395 None:intergenic 20.0%
!! TCAGTAAGTTAAAAGAATAT+CGG + chr1.2:70789435-70789454 None:intergenic 20.0%
!!! AAAATACACAGAAATCTTTT+CGG - chr1.2:70789599-70789618 MS.gene60687:intron 20.0%
!!! ACCAAAATTTTATCTAACTT+GGG + chr1.2:70790244-70790263 None:intergenic 20.0%
!!! AGAATTTACGCTAATTTTTT+TGG - chr1.2:70788415-70788434 MS.gene60687:intron 20.0%
!!! ATCCAATTTTTTCCTATATT+TGG - chr1.2:70788371-70788390 MS.gene60687:intron 20.0%
!!! CATGCATATAATTAATTTGT+AGG - chr1.2:70790059-70790078 MS.gene60687:intron 20.0%
!!! TAATTTTTTTGGAACACAAA+AGG - chr1.2:70788426-70788445 MS.gene60687:intron 20.0%
!!! TTATAGATAGTTAGTTTCAA+TGG - chr1.2:70789494-70789513 MS.gene60687:intron 20.0%
! AAAACAATATCCAAAAATGC+TGG + chr1.2:70788828-70788847 None:intergenic 25.0%
! AACTACAAATTTACTAAACG+CGG - chr1.2:70788452-70788471 MS.gene60687:intron 25.0%
! AATCAAAAGGTCTAAGTTTA+GGG + chr1.2:70788099-70788118 None:intergenic 25.0%
! AATCAAATGCAGTATCATTA+TGG + chr1.2:70789564-70789583 None:intergenic 25.0%
! AATTTAAGCACTTATAAGCA+GGG - chr1.2:70788150-70788169 MS.gene60687:intron 25.0%
! ACTGTTAAACTGTTAAACTA+TGG - chr1.2:70788710-70788729 MS.gene60687:CDS 25.0%
! ACTTCAACATAATGAAATTG+AGG - chr1.2:70789770-70789789 MS.gene60687:intron 25.0%
! AGTAAGTTAAAAGAATATCG+GGG + chr1.2:70789433-70789452 None:intergenic 25.0%
! ATCATGTCTTAACCAAAATT+AGG + chr1.2:70789709-70789728 None:intergenic 25.0%
! ATGGTTATTATAAAACGGAA+AGG + chr1.2:70787795-70787814 None:intergenic 25.0%
! CAGTAAGTTAAAAGAATATC+GGG + chr1.2:70789434-70789453 None:intergenic 25.0%
! TATTATAAAACGGAAAGGAA+AGG + chr1.2:70787790-70787809 None:intergenic 25.0%
! TCTACTTAAAAACAACCTTT+AGG + chr1.2:70789820-70789839 None:intergenic 25.0%
! TTAGAATGTAAAGAACCTAA+AGG - chr1.2:70789802-70789821 MS.gene60687:intron 25.0%
! TTCCAACACTATATATTTCA+CGG - chr1.2:70788019-70788038 MS.gene60687:intron 25.0%
!! CCAAAATTTTATCTAACTTG+GGG + chr1.2:70790243-70790262 None:intergenic 25.0%
!! GACCAAAATTTTATCTAACT+TGG + chr1.2:70790245-70790264 None:intergenic 25.0%
!! TGAAATATATAGTGTTGGAA+GGG + chr1.2:70788019-70788038 None:intergenic 25.0%
!!! TTTTGGTTAAGACATGATAT+TGG - chr1.2:70789711-70789730 MS.gene60687:intron 25.0%
ACAAAAGAAAACTAGGATGT+TGG - chr1.2:70790195-70790214 MS.gene60687:CDS 30.0%
ATTATGTCCTGTCAAAATTG+CGG - chr1.2:70788271-70788290 MS.gene60687:intron 30.0%
CAAATCATCAAAAGAGGAAA+AGG + chr1.2:70788876-70788895 None:intergenic 30.0%
CAATCAAAAGGTCTAAGTTT+AGG + chr1.2:70788100-70788119 None:intergenic 30.0%
CATGAAAAATTGTGATGTCA+AGG - chr1.2:70789531-70789550 MS.gene60687:intron 30.0%
CATGAAATATAACCAGCTAA+AGG + chr1.2:70789013-70789032 None:intergenic 30.0%
CGTCATATTTGAAAAAGTGA+AGG - chr1.2:70789902-70789921 MS.gene60687:intron 30.0%
CTTAACCAAAATTAGGAACT+AGG + chr1.2:70789702-70789721 None:intergenic 30.0%
GAATTTAAGCACTTATAAGC+AGG - chr1.2:70788149-70788168 MS.gene60687:intron 30.0%
GGTAATATGATTCAGAAATG+AGG + chr1.2:70787998-70788017 None:intergenic 30.0%
TAAATCTCATCACAGTCATT+TGG - chr1.2:70790011-70790030 MS.gene60687:intron 30.0%
TCCTTAAAGATGATGAAAGT+TGG + chr1.2:70789243-70789262 None:intergenic 30.0%
TGACAAGACAAAAGAAAACT+AGG - chr1.2:70790188-70790207 MS.gene60687:CDS 30.0%
TTGAAAAAGTGAAGGAATGA+AGG - chr1.2:70789910-70789929 MS.gene60687:intron 30.0%
! AATTTTATCTAACTTGGGGA+AGG + chr1.2:70790239-70790258 None:intergenic 30.0%
! ACTGTTAAACTATGGCTTTA+AGG - chr1.2:70788718-70788737 MS.gene60687:CDS 30.0%
! ACTTTCATCATCTTTAAGGA+TGG - chr1.2:70789243-70789262 MS.gene60687:intron 30.0%
! CAATAAGACCCTAAGATTTT+TGG + chr1.2:70788130-70788149 None:intergenic 30.0%
! CCCCAAGTTAGATAAAATTT+TGG - chr1.2:70790240-70790259 MS.gene60687:CDS 30.0%
! GTGAAATATATAGTGTTGGA+AGG + chr1.2:70788020-70788039 None:intergenic 30.0%
! TAAGTAGAAACTTTTGTCTG+TGG - chr1.2:70789832-70789851 MS.gene60687:intron 30.0%
! TTCTGTGTATTTTCTATGAC+TGG + chr1.2:70789592-70789611 None:intergenic 30.0%
! TTTTGGATATTGTTTTCTGC+AGG - chr1.2:70788832-70788851 MS.gene60687:intron 30.0%
!! TGTAAGCAGGGTTTTAATAA+AGG + chr1.2:70788304-70788323 None:intergenic 30.0%
!! TTTTGGTCTTCATGATTTTC+AGG - chr1.2:70790257-70790276 MS.gene60687:CDS 30.0%
AAGAAGAGTTCAAAGAATGG+AGG + chr1.2:70787612-70787631 None:intergenic 35.0%
ACGAAGAAGAGTTCAAAGAA+TGG + chr1.2:70787615-70787634 None:intergenic 35.0%
AGAAGAAAATGGAAAACGCA+CGG + chr1.2:70788958-70788977 None:intergenic 35.0%
AGAATTTATGACGTGTAAGC+AGG + chr1.2:70788317-70788336 None:intergenic 35.0%
AGTGCACTTTCTAGATGTTT+GGG - chr1.2:70787904-70787923 MS.gene60687:intron 35.0%
ATCAGGGCAATCATCATAAA+TGG - chr1.2:70788520-70788539 MS.gene60687:intron 35.0%
ATGAAGAGAGGAGAAGAAAA+TGG + chr1.2:70788969-70788988 None:intergenic 35.0%
CAACTTACAAAGCGATCAAA+GGG + chr1.2:70789273-70789292 None:intergenic 35.0%
CACTATATATTTCACGGACT+AGG - chr1.2:70788025-70788044 MS.gene60687:intron 35.0%
CTGCAATTGCAATCATGTTA+TGG - chr1.2:70788227-70788246 MS.gene60687:intron 35.0%
GAATTTATGACGTGTAAGCA+GGG + chr1.2:70788316-70788335 None:intergenic 35.0%
GCATAGAAGTCAACAAATAC+AGG + chr1.2:70788917-70788936 None:intergenic 35.0%
GCCAACTTTCATCATCTTTA+AGG - chr1.2:70789239-70789258 MS.gene60687:intron 35.0%
GTCCGTGAAATATATAGTGT+TGG + chr1.2:70788024-70788043 None:intergenic 35.0%
TAGTGCACTTTCTAGATGTT+TGG - chr1.2:70787903-70787922 MS.gene60687:intron 35.0%
TGCAAGCAAATCATCAAAAG+AGG + chr1.2:70788882-70788901 None:intergenic 35.0%
TGCCAACAAATACAACATTG+AGG - chr1.2:70789212-70789231 MS.gene60687:intron 35.0%
TGCCTCAATGTTGTATTTGT+TGG + chr1.2:70789217-70789236 None:intergenic 35.0%
TGTAGAAGACTTGTATGTAG+AGG - chr1.2:70789671-70789690 MS.gene60687:intron 35.0%
TGTCTGTGGTCTATAACATA+TGG - chr1.2:70789846-70789865 MS.gene60687:intron 35.0%
TTATTGCTTAACGTTGAGAG+TGG + chr1.2:70790325-70790344 None:intergenic 35.0%
! AATCGCCTAGTTCCTAATTT+TGG - chr1.2:70789694-70789713 MS.gene60687:intron 35.0%
! AATTATCGCCTGATTTGATC+AGG - chr1.2:70788503-70788522 MS.gene60687:intron 35.0%
! ATTATCGCCTGATTTGATCA+GGG - chr1.2:70788504-70788523 MS.gene60687:intron 35.0%
! TTGTATTTGTTGGCAATGCT+AGG + chr1.2:70789207-70789226 None:intergenic 35.0%
!! TAAGACCCTAAGATTTTTGG+TGG + chr1.2:70788127-70788146 None:intergenic 35.0%
!!! GAAGCATTTTTTCCTTTAGC+TGG - chr1.2:70788998-70789017 MS.gene60687:CDS 35.0%
!!! TAGGCTTTTGTTTTGGTGTT+TGG - chr1.2:70788044-70788063 MS.gene60687:intron 35.0%
AAACGATTTAGCAGCTAGAC+TGG + chr1.2:70788634-70788653 None:intergenic 40.0%
AACGATTTAGCAGCTAGACT+GGG + chr1.2:70788633-70788652 None:intergenic 40.0%
AAGAAAATGGAAAACGCACG+GGG + chr1.2:70788956-70788975 None:intergenic 40.0%
AGCCTTAGTAGTGTCTGTAA+AGG + chr1.2:70789745-70789764 None:intergenic 40.0%
AGTGCAAGCATGAATGAACA+TGG + chr1.2:70788752-70788771 None:intergenic 40.0%
ATCTCGAGTATCAGAAGTAG+AGG + chr1.2:70788689-70788708 None:intergenic 40.0%
ATGATTGCCCTGATCAAATC+AGG + chr1.2:70788514-70788533 None:intergenic 40.0%
CAAAGAATGGAGGATTACAG+AGG + chr1.2:70787602-70787621 None:intergenic 40.0%
CAATTTAGGCTCACAATGCT+TGG + chr1.2:70790154-70790173 None:intergenic 40.0%
CACACCTATAAACCAGCATT+GGG + chr1.2:70789092-70789111 None:intergenic 40.0%
CACCTTTACAGACACTACTA+AGG - chr1.2:70789740-70789759 MS.gene60687:intron 40.0%
CCAACTTACAAAGCGATCAA+AGG + chr1.2:70789274-70789293 None:intergenic 40.0%
CCTTTGATCGCTTTGTAAGT+TGG - chr1.2:70789271-70789290 MS.gene60687:intron 40.0%
CGTAAATTCTGGCGATCAAT+GGG + chr1.2:70788405-70788424 None:intergenic 40.0%
GAAGAAAATGGAAAACGCAC+GGG + chr1.2:70788957-70788976 None:intergenic 40.0%
GAAGATAGCTTGACATAGTC+TGG - chr1.2:70789932-70789951 MS.gene60687:intron 40.0%
GAGTCATGTTTATCGTGAAG+CGG + chr1.2:70788600-70788619 None:intergenic 40.0%
GCCATCCACCAAAAATCTTA+GGG - chr1.2:70788119-70788138 MS.gene60687:intron 40.0%
GTAAATTCTGGCGATCAATG+GGG + chr1.2:70788404-70788423 None:intergenic 40.0%
GTCAACAAATACAGGCTTGT+CGG + chr1.2:70788909-70788928 None:intergenic 40.0%
GTGCAAGCATGAATGAACAT+GGG + chr1.2:70788751-70788770 None:intergenic 40.0%
GTGCACTTTCTAGATGTTTG+GGG - chr1.2:70787905-70787924 MS.gene60687:intron 40.0%
TCTAATCAGTAACCCAATGC+TGG - chr1.2:70789077-70789096 MS.gene60687:intron 40.0%
TCTTCTCCTCTCTTCATGTT+GGG - chr1.2:70788972-70788991 MS.gene60687:intron 40.0%
TGCCATCCACCAAAAATCTT+AGG - chr1.2:70788118-70788137 MS.gene60687:intron 40.0%
TGGGGCAACAATCCAAATAT+AGG + chr1.2:70788386-70788405 None:intergenic 40.0%
TTCAAACCCAACATGAAGAG+AGG + chr1.2:70788981-70789000 None:intergenic 40.0%
TTCTTCTCCTCTCTTCATGT+TGG - chr1.2:70788971-70788990 MS.gene60687:intron 40.0%
! AAATCTTTTCGGCTTCTTGC+TGG - chr1.2:70789610-70789629 MS.gene60687:intron 40.0%
! AATCTTTTCGGCTTCTTGCT+GGG - chr1.2:70789611-70789630 MS.gene60687:intron 40.0%
! AGGTGTGAAGATGATGATGA+AGG + chr1.2:70787652-70787671 None:intergenic 40.0%
! TGAGAACTGACCAGCATTTT+TGG - chr1.2:70788815-70788834 MS.gene60687:intron 40.0%
! TGTTACTTACGAGAGGAAGT+AGG + chr1.2:70787744-70787763 None:intergenic 40.0%
! TTTGGTGGATGGCAATCAAA+AGG + chr1.2:70788112-70788131 None:intergenic 40.0%
!! GGTCTTCATGATTTTCAGGA+GGG - chr1.2:70790261-70790280 MS.gene60687:CDS 40.0%
!! GTAACCCAATGCTGGTTTAT+AGG - chr1.2:70789085-70789104 MS.gene60687:intron 40.0%
!! TGGTCTTCATGATTTTCAGG+AGG - chr1.2:70790260-70790279 MS.gene60687:CDS 40.0%
!! TGGTTAGTGTTACTTACGAG+AGG + chr1.2:70787751-70787770 None:intergenic 40.0%
!! TTGTTGACTTCTATGCAACC+TGG - chr1.2:70788921-70788940 MS.gene60687:intron 40.0%
!!! ACCCTAAGATTTTTGGTGGA+TGG + chr1.2:70788123-70788142 None:intergenic 40.0%
AACATCCCATAACAGTACCC+CGG - chr1.2:70788663-70788682 MS.gene60687:CDS 45.0%
AATCACGATCCTTGATGCTG+TGG - chr1.2:70788184-70788203 MS.gene60687:intron 45.0%
ACAGGAACCATGAACTGACA+AGG + chr1.2:70789117-70789136 None:intergenic 45.0%
ATAGTCTGGACTCTGGTGTT+TGG - chr1.2:70789946-70789965 MS.gene60687:intron 45.0%
CATGATTCTCCACAGCATCA+AGG + chr1.2:70788196-70788215 None:intergenic 45.0%
CCACACCTATAAACCAGCAT+TGG + chr1.2:70789093-70789112 None:intergenic 45.0%
CTTGATGCTGTGGAGAATCA+TGG - chr1.2:70788194-70788213 MS.gene60687:intron 45.0%
GCGTAAATTCTGGCGATCAA+TGG + chr1.2:70788406-70788425 None:intergenic 45.0%
GTTCATGGTTCCTGTACTTG+AGG - chr1.2:70789122-70789141 MS.gene60687:intron 45.0%
TAATTCGATGTTGACGCTGC+TGG + chr1.2:70788488-70788507 None:intergenic 45.0%
TGGAGAATCATGGTCAAACG+CGG - chr1.2:70788204-70788223 MS.gene60687:intron 45.0%
TGGATGGTCTTTGCCATGAT+GGG + chr1.2:70788569-70788588 None:intergenic 45.0%
!! ATCGTGAAGCGGATTTTGTG+TGG + chr1.2:70788589-70788608 None:intergenic 45.0%
!! CCAATGCTGGTTTATAGGTG+TGG - chr1.2:70789090-70789109 MS.gene60687:intron 45.0%
!! TGAAGCGGATTTTGTGTGGA+TGG + chr1.2:70788585-70788604 None:intergenic 45.0%
!!! CACGGACTAGGCTTTTGTTT+TGG - chr1.2:70788037-70788056 MS.gene60687:intron 45.0%
ACGAGAGGAAGTAGGAAACG+AGG + chr1.2:70787736-70787755 None:intergenic 50.0%
ACTCCTCGCCTTCTTCCAAT+TGG - chr1.2:70787682-70787701 MS.gene60687:intron 50.0%
AGTATCAGAAGTAGAGGCCG+GGG + chr1.2:70788683-70788702 None:intergenic 50.0%
CGAGAGGAAGTAGGAAACGA+GGG + chr1.2:70787735-70787754 None:intergenic 50.0%
CGAGTATCAGAAGTAGAGGC+CGG + chr1.2:70788685-70788704 None:intergenic 50.0%
GAAAGACGGCGAGTACCAAT+TGG + chr1.2:70787700-70787719 None:intergenic 50.0%
GAGTATCAGAAGTAGAGGCC+GGG + chr1.2:70788684-70788703 None:intergenic 50.0%
GCTTGACATAGTCTGGACTC+TGG - chr1.2:70789939-70789958 MS.gene60687:intron 50.0%
GGATGGTCTTTGCCATGATG+GGG + chr1.2:70788568-70788587 None:intergenic 50.0%
GGCGAGGAGTTCGAAATTGA+AGG + chr1.2:70787672-70787691 None:intergenic 50.0%
GGCGAGTACCAATTGGAAGA+AGG + chr1.2:70787693-70787712 None:intergenic 50.0%
GTACCAATTGGAAGAAGGCG+AGG + chr1.2:70787688-70787707 None:intergenic 50.0%
GTGGATGGTCTTTGCCATGA+TGG + chr1.2:70788570-70788589 None:intergenic 50.0%
GTGTGGTCCTTGTCAGTTCA+TGG - chr1.2:70789107-70789126 MS.gene60687:intron 50.0%
TACTTGAGGAAGTGAGCGCT+CGG - chr1.2:70789136-70789155 MS.gene60687:intron 50.0%
TTCTGCACCAATCCCCATCA+TGG - chr1.2:70788553-70788572 MS.gene60687:intron 50.0%
! GTCTTTGCCATGATGGGGAT+TGG + chr1.2:70788563-70788582 None:intergenic 50.0%
!! GGGGTACTGTTATGGGATGT+TGG + chr1.2:70788664-70788683 None:intergenic 50.0%
!! TCTGCGACCGCAATTTTGAC+AGG + chr1.2:70788281-70788300 None:intergenic 50.0%
!! TGATGAAGGTACCAGACGTG+TGG + chr1.2:70787638-70787657 None:intergenic 50.0%
AGACGCTGCTGAGATGGAAG+CGG + chr1.2:70787578-70787597 None:intergenic 55.0%
AGAGGAAGACGCTGCTGAGA+TGG + chr1.2:70787584-70787603 None:intergenic 55.0%
AGGAAGTAGGAAACGAGGGC+GGG + chr1.2:70787731-70787750 None:intergenic 55.0%
CTCTTCTTCGTCCACACGTC+TGG - chr1.2:70787624-70787643 MS.gene60687:intron 55.0%
GAGGAAGTAGGAAACGAGGG+CGG + chr1.2:70787732-70787751 None:intergenic 55.0%
GCGCTCACTTCCTCAAGTAC+AGG + chr1.2:70789135-70789154 None:intergenic 55.0%
!! AGAGGCCGGGGTACTGTTAT+GGG + chr1.2:70788671-70788690 None:intergenic 55.0%
!! TAGAGGCCGGGGTACTGTTA+TGG + chr1.2:70788672-70788691 None:intergenic 55.0%
AAGTAGGAAACGAGGGCGGG+AGG + chr1.2:70787728-70787747 None:intergenic 60.0%
CGCACGGGGAGAAAGTTACC+AGG + chr1.2:70788942-70788961 None:intergenic 60.0%
GGCGGGAGGAAGAGGAAAGA+CGG + chr1.2:70787714-70787733 None:intergenic 60.0%
GAAACGAGGGCGGGAGGAAG+AGG + chr1.2:70787722-70787741 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 70787571 70790344 70787571 ID=MS.gene60687
chr1.2 mRNA 70787571 70790344 70787571 ID=MS.gene60687.t1;Parent=MS.gene60687
chr1.2 exon 70790162 70790344 70790162 ID=MS.gene60687.t1.exon1;Parent=MS.gene60687.t1
chr1.2 CDS 70790162 70790344 70790162 ID=cds.MS.gene60687.t1;Parent=MS.gene60687.t1
chr1.2 exon 70788973 70789061 70788973 ID=MS.gene60687.t1.exon2;Parent=MS.gene60687.t1
chr1.2 CDS 70788973 70789061 70788973 ID=cds.MS.gene60687.t1;Parent=MS.gene60687.t1
chr1.2 exon 70788631 70788808 70788631 ID=MS.gene60687.t1.exon3;Parent=MS.gene60687.t1
chr1.2 CDS 70788631 70788808 70788631 ID=cds.MS.gene60687.t1;Parent=MS.gene60687.t1
chr1.2 exon 70787571 70787636 70787571 ID=MS.gene60687.t1.exon4;Parent=MS.gene60687.t1
chr1.2 CDS 70787571 70787636 70787571 ID=cds.MS.gene60687.t1;Parent=MS.gene60687.t1
Gene Sequence

>MS.gene60687

ATGGCCGCTTCCATCTCAGCAGCGTCTTCCTCTGTAATCCTCCATTCTTTGAACTCTTCTTCGTCCACACGTCTGGTACCTTCATCATCATCTTCACACCTTCAATTTCGAACTCCTCGCCTTCTTCCAATTGGTACTCGCCGTCTTTCCTCTTCCTCCCGCCCTCGTTTCCTACTTCCTCTCGTAAGTAACACTAACCAACTATTTTATTTTTCTCCTTTCCTTTCCGTTTTATAATAACCATTATTATTATTATTCTTTCTTCATTATTTTATTTATACTTGTTGTTGGAATATCCAAGTTATTCACTAATTTATTACATAAATCGCTGATAGTGCACTTTCTAGATGTTTGGGGCATTATGCTGAATATCACAATAACATGCTCATTTTGAACTCATCATGAATCTTTGACTTGTTGTTTGCCTCATTTCTGAATCATATTACCCTTCCAACACTATATATTTCACGGACTAGGCTTTTGTTTTGGTGTTTGGCAACTGATTACATACATGCTCACAAGACTCCCTAAACTTAGACCTTTTGATTGCCATCCACCAAAAATCTTAGGGTCTTATTGAATTTAAGCACTTATAAGCAGGGTTTTAACTAACAATCACGATCCTTGATGCTGTGGAGAATCATGGTCAAACGCGGCTGCAATTGCAATCATGTTATGGTTTTGACAACATCAACAAAACATTATGTCCTGTCAAAATTGCGGTCGCAGACCTTTATTAAAACCCTGCTTACACGTCATAAATTCTCATATGATCGAATAGACATTCAATTTAGCTGTTTATCCAATTTTTTCCTATATTTGGATTGTTGCCCCATTGATCGCCAGAATTTACGCTAATTTTTTTGGAACACAAAAGGACAAACTACAAATTTACTAAACGCGGAGTCAAAACTCCAGCAGCGTCAACATCGAATTATCGCCTGATTTGATCAGGGCAATCATCATAAATGGTCAGCTTGTTTTCTGCACCAATCCCCATCATGGCAAAGACCATCCACACAAAATCCGCTTCACGATAAACATGACTCATTTTAATTTCCCAGTCTAGCTGCTAAATCGTTTCAACAAGCCAACATCCCATAACAGTACCCCGGCCTCTACTTCTGATACTCGAGATAACTGTTAAACTGTTAAACTATGGCTTTAAGGATGCTGACCCATGTTCATTCATGCTTGCACTCAAACTAGTTAAACTGAACTTTTCTGCTTCTGAAATAATTAATTGAGAACTGACCAGCATTTTTGGATATTGTTTTCTGCAGGTTCAAGCAAAGAAACAAACCTTTTCCTCTTTTGATGATTTGCTTGCAAACTCCGACAAGCCTGTATTTGTTGACTTCTATGCAACCTGGTAACTTTCTCCCCGTGCGTTTTCCATTTTCTTCTCCTCTCTTCATGTTGGGTTTGAAGCATTTTTTCCTTTAGCTGGTTATATTTCATGTTTAAACTATTTTAACTTGACTATTTATAAATTATATAATTACATCTAATCAGTAACCCAATGCTGGTTTATAGGTGTGGTCCTTGTCAGTTCATGGTTCCTGTACTTGAGGAAGTGAGCGCTCGGCTTCAAGATCAGATACAAATAGTTAAGATTGATACTGAGAAGTATCCTAGCATTGCCAACAAATACAACATTGAGGCATTGCCAACTTTCATCATCTTTAAGGATGGAAAACCCTTTGATCGCTTTGTAAGTTGGATTATATTTTCTTTCTGCTTCTTCTACAACGACTTAAAATTACATGACACCGCATTCAATTTAAATCATTAAATCGAATTTGATGTTTTCTATATTAACTGTATTTGCATTAGCAGTGTTACAAACTTGCAATGCTCCCCGATATTCTTTTAACTTACTGAACTTCTAGTCTTCAATTTTGTTGAAACTTCAACTATCATTTATAGATAGTTAGTTTCAATGGAAAGTTCGATAATACATGAAAAATTGTGATGTCAAGGTCACAAACCATAATGATACTGCATTTGATTGCTAACCAGTCATAGAAAATACACAGAAATCTTTTCGGCTTCTTGCTGGGAACTGTTTCAGCTTAGTTCTTGTTGTTGACAACATTTTGTAGAAGACTTGTATGTAGAGGAATCGCCTAGTTCCTAATTTTGGTTAAGACATGATATTGGAACGTTCACCTTTACAGACACTACTAAGGCTTGTTGACTTCAACATAATGAAATTGAGGTTGCTTTGATTAGAATGTAAAGAACCTAAAGGTTGTTTTTAAGTAGAAACTTTTGTCTGTGGTCTATAACATATGGTTGTATCATTTAGTTATAAATGCTTTCTTTCATCGTCATATTTGAAAAAGTGAAGGAATGAAGGAAGATAGCTTGACATAGTCTGGACTCTGGTGTTTGGCTGTTTACTACCTTTCTTATTGTTGTAAATTGTCATTCATCTTAAATCTCATCACAGTCATTTGGTATATAAATATATTTTCAAAATTAACATGCATATAATTAATTTGTAGGCAGCTTCTTGTGTGCTTGATATGTTATTTATTTATAAAAAATCATTGTGTGTGTACTGATTAGTGTTTACCAAGCATTGTGAGCCTAAATTGATGTTTTGTATATTTGACAAGACAAAAGAAAACTAGGATGTTGGCTGCTATTTTAGCAACTACCTTCCCCAAGTTAGATAAAATTTTGGTCTTCATGATTTTCAGGAGGGAGCATTAACAGCAGATAAGCTAATTGAACGCATAGAAACCACTCTCAACGTTAAGCAATAA
Protein sequence

>MS.gene60687.t1

MAASISAASSSVILHSLNSSSSTRLVPSSSSSHLQFRTPRLLPIGTRRLSSSSRPRFLLPLVQAKKQTFSSFDDLLANSDKPVFVDFYATWCGPCQFMVPVLEEVSARLQDQIQIVKIDTEKYPSIANKYNIEALPTFIIFKDGKPFDRFEGALTADKLIERIETTLNVKQ