AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029227

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029227.t1 MTR_1g114290 93.976 166 7 2 1 165 1 164 2.88e-103 294
MS.gene029227.t1 MTR_2g079420 38.053 113 70 0 41 153 40 152 3.33e-25 95.5
MS.gene029227.t1 MTR_3g089065 42.169 83 48 0 71 153 70 152 5.47e-24 92.4
MS.gene029227.t1 MTR_4g085880 45.122 82 45 0 72 153 66 147 1.95e-23 90.9
MS.gene029227.t1 MTR_1g098660 40.909 88 50 1 77 164 68 153 1.57e-22 88.6
MS.gene029227.t1 MTR_8g059015 39.759 83 50 0 71 153 73 155 7.19e-21 84.3
MS.gene029227.t1 MTR_7g009070 39.744 78 43 2 86 160 47 123 5.45e-17 73.2
MS.gene029227.t1 MTR_2g079400 37.209 86 54 0 68 153 31 116 1.10e-15 70.1
MS.gene029227.t1 MTR_2g079340 38.750 80 49 0 74 153 39 118 8.67e-15 68.2
MS.gene029227.t1 MTR_5g084930 35.780 109 65 2 53 158 14 120 1.86e-14 70.1
MS.gene029227.t1 MTR_5g084930 32.632 95 60 1 73 163 162 256 5.49e-13 65.9
MS.gene029227.t1 MTR_1g023140 36.735 98 52 4 77 165 15 111 3.25e-14 65.9
MS.gene029227.t1 MTR_2g079380 38.372 86 53 0 68 153 15 100 8.03e-14 67.4
MS.gene029227.t1 MTR_1g087520 39.535 86 46 2 79 158 157 242 1.15e-13 67.8
MS.gene029227.t1 MTR_1g037680 35.294 85 53 1 81 163 89 173 4.01e-13 64.3
MS.gene029227.t1 MTR_3g112410 37.209 86 47 3 86 165 27 111 5.05e-13 62.4
MS.gene029227.t1 MTR_2g021750 34.483 116 71 2 53 165 14 127 1.44e-12 64.7
MS.gene029227.t1 MTR_2g079360 34.375 96 62 1 59 153 34 129 2.26e-12 61.6
MS.gene029227.t1 MTR_8g107460 35.294 85 53 2 70 153 258 341 2.59e-11 60.8
MS.gene029227.t1 MTR_5g021180 31.343 67 45 1 85 151 28 93 3.05e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029227.t1 AT1G50320 53.757 173 64 5 1 165 1 165 4.97e-55 172
MS.gene029227.t1 AT1G76760 44.186 86 46 1 79 164 73 156 2.46e-24 93.2
MS.gene029227.t1 AT1G43560 43.529 85 46 1 79 163 68 150 6.82e-22 87.0
MS.gene029227.t1 AT1G03680 40.476 84 50 0 70 153 75 158 2.41e-21 85.9
MS.gene029227.t1 AT2G15570 41.463 82 48 0 72 153 70 151 5.75e-21 84.7
MS.gene029227.t1 AT2G15570 41.463 82 48 0 72 153 69 150 6.32e-21 84.7
MS.gene029227.t1 AT3G15360 39.759 83 50 0 71 153 88 170 1.49e-20 84.0
MS.gene029227.t1 AT4G03520 37.349 83 52 0 71 153 82 164 2.35e-18 78.2
MS.gene029227.t1 AT5G39950 37.209 86 49 3 78 160 39 122 7.77e-16 70.5
MS.gene029227.t1 AT2G32920 36.082 97 59 1 71 164 32 128 2.20e-14 70.1
MS.gene029227.t1 AT1G04980 36.735 98 59 1 71 165 34 131 3.11e-14 69.7
MS.gene029227.t1 AT1G04980 31.579 95 61 1 73 163 171 265 3.76e-11 60.8
MS.gene029227.t1 AT2G47470 39.773 88 47 2 77 158 149 236 1.26e-13 67.4
MS.gene029227.t1 AT2G47470 39.773 88 47 2 77 158 149 236 1.27e-13 67.8
MS.gene029227.t1 AT2G47470 39.773 88 47 2 77 158 149 236 1.35e-13 67.0
MS.gene029227.t1 AT2G47470 39.773 88 47 2 77 158 149 236 1.60e-13 67.0
MS.gene029227.t1 AT3G06730 34.737 95 59 2 71 163 77 170 4.34e-13 64.3
MS.gene029227.t1 AT5G42980 38.235 68 41 1 85 152 25 91 7.76e-13 62.0
MS.gene029227.t1 AT5G60640 38.947 95 53 3 74 164 108 201 8.08e-13 65.5
MS.gene029227.t1 AT5G60640 38.947 95 53 3 74 164 108 201 1.14e-12 65.1
MS.gene029227.t1 AT5G60640 37.755 98 56 3 71 164 105 201 4.60e-12 63.5
MS.gene029227.t1 AT1G69880 35.714 84 52 2 71 153 42 124 1.59e-11 59.3
MS.gene029227.t1 AT1G19730 30.380 79 52 1 85 160 26 104 3.00e-11 57.8
MS.gene029227.t1 AT1G77510 35.577 104 56 5 71 164 31 133 4.20e-11 60.5
MS.gene029227.t1 AT1G45145 29.070 86 59 2 66 151 7 90 4.24e-11 57.4

Find 49 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAAGAGTATAAAGTTTA+TGG 0.088645 1.2:-84121135 MS.gene029227:CDS
CCCCGTTCTTGAAGAGTATC+AGG 0.263376 1.2:+84121103 None:intergenic
GCACCTTCCTTCCTGCTTCC+TGG 0.279114 1.2:+84121072 None:intergenic
CCCTGATACTCTTCAAGAAC+GGG 0.388833 1.2:-84121104 MS.gene029227:CDS
TCAATACGGTTTCCTTGAAC+TGG 0.391435 1.2:+84122812 None:intergenic
AAGAACGGGGAGGAATTTCC+AGG 0.409346 1.2:-84121090 MS.gene029227:CDS
TCTAACTCTCCCAACCGTTC+CGG 0.449468 1.2:-84123007 MS.gene029227:CDS
CCGTTTGATCACTCCAGCTA+TGG 0.459141 1.2:-84122737 MS.gene029227:CDS
TAGTTGAATTCGTTGCTACT+TGG 0.466999 1.2:-84122771 MS.gene029227:CDS
ATTGTACGAACCGGAACGGT+TGG 0.469903 1.2:+84122997 None:intergenic
TTGTACGAACCGGAACGGTT+GGG 0.477965 1.2:+84122998 None:intergenic
TGAGCTATGGATTCCATAGC+TGG 0.482178 1.2:+84122724 None:intergenic
AGAAAGAGGTACCTGAGCTA+TGG 0.486986 1.2:+84122711 None:intergenic
GCAACGAATTCAACTAAAAC+CGG 0.491722 1.2:+84122778 None:intergenic
GTTGAGGTCACCGTATCCAT+TGG 0.493134 1.2:+84123045 None:intergenic
CGTATTGAAATCTGAGCGTC+CGG 0.497098 1.2:-84122797 MS.gene029227:CDS
TAAGGGAAGAGATGAGGATA+CGG 0.499243 1.2:+84122960 None:intergenic
TGACCGGTGAGAACGTGGTA+AGG 0.505991 1.2:+84122942 None:intergenic
AGAGTCTTTGCCGAGTTGAC+CGG 0.508220 1.2:+84122926 None:intergenic
TATACTCTTCAATTAGCTGC+GGG 0.511786 1.2:+84121145 None:intergenic
GGGAGGAATTTCCAGGAAGC+AGG 0.512537 1.2:-84121083 MS.gene029227:CDS
CCGCAACTCACTGTAAACTT+AGG 0.512897 1.2:+84122856 None:intergenic
AATCAATGAAAGCCAGTTCA+AGG 0.512971 1.2:-84122824 MS.gene029227:CDS
TTCCCTTACCACGTTCTCAC+CGG 0.519028 1.2:-84122945 MS.gene029227:CDS
TACAGTGAGTTGCGGTATCA+CGG 0.521048 1.2:-84122848 MS.gene029227:CDS
AGCTATGGAATCCATAGCTC+AGG 0.524162 1.2:-84122722 MS.gene029227:intron
CACGTTCTCACCGGTCAACT+CGG 0.532357 1.2:-84122936 MS.gene029227:CDS
TGAGGATACGGAGATTGAAG+AGG 0.544293 1.2:+84122972 None:intergenic
CGGACGCTCAGATTTCAATA+CGG 0.547344 1.2:+84122798 None:intergenic
CCATAGCTGGAGTGATCAAA+CGG 0.549337 1.2:+84122737 None:intergenic
GAAGAGGTAATTGTACGAAC+CGG 0.550130 1.2:+84122988 None:intergenic
CCTAAGTTTACAGTGAGTTG+CGG 0.570949 1.2:-84122856 MS.gene029227:CDS
TCATTGAAATCCAATGGATA+CGG 0.572041 1.2:-84123055 None:intergenic
ACGTGGTAAGGGAAGAGATG+AGG 0.572348 1.2:+84122954 None:intergenic
ACCCTGATACTCTTCAAGAA+CGG 0.577296 1.2:-84121105 MS.gene029227:CDS
TTCTTGAAGAGTATCAGGGT+TGG 0.579923 1.2:+84121108 None:intergenic
CCCGTTCTTGAAGAGTATCA+GGG 0.580271 1.2:+84121104 None:intergenic
TTTCCAGGAAGCAGGAAGGA+AGG 0.591083 1.2:-84121075 MS.gene029227:CDS
GACCGGTGAGAACGTGGTAA+GGG 0.599839 1.2:+84122943 None:intergenic
CGAGTTGACCGGTGAGAACG+TGG 0.605237 1.2:+84122937 None:intergenic
GAATTCGTTGCTACTTGGTG+CGG 0.606167 1.2:-84122766 MS.gene029227:CDS
TTATACTCTTCAATTAGCTG+CGG 0.611346 1.2:+84121144 None:intergenic
AGTGAGCGAAGCTGAAGTTG+AGG 0.632954 1.2:+84123029 None:intergenic
GGAATTTCCAGGAAGCAGGA+AGG 0.646284 1.2:-84121079 MS.gene029227:CDS
GGTAATTGTACGAACCGGAA+CGG 0.669877 1.2:+84122993 None:intergenic
GAAGGAAGGTGCAATTACAA+AGG 0.680704 1.2:-84121061 None:intergenic
GCTGGAGTGATCAAACGGCA+AGG 0.683277 1.2:+84122742 None:intergenic
CCTGATACTCTTCAAGAACG+GGG 0.694186 1.2:-84121103 MS.gene029227:CDS
GATACTCTTCAAGAACGGGG+AGG 0.730377 1.2:-84121100 MS.gene029227:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATAGATAGTTATTG+AGG - chr1.2:84122713-84122732 MS.gene029227:intron 15.0%
!!! CTTCAATTTTATTAAGAAAA+AGG - chr1.2:84122409-84122428 MS.gene029227:intron 15.0%
!! TTTCAAATTATTAGTTGTGT+CGG - chr1.2:84122071-84122090 MS.gene029227:intron 20.0%
!!! ACCTCTAAAATCATTTATAT+TGG - chr1.2:84121612-84121631 MS.gene029227:intron 20.0%
!!! ACTTTTTATTTTGTTTTTGC+CGG - chr1.2:84121425-84121444 MS.gene029227:intron 20.0%
!!! ATTGAAGAGTATAAAGTTTA+TGG - chr1.2:84122969-84122988 MS.gene029227:CDS 20.0%
!!! CCTCTAAAATCATTTATATT+GGG - chr1.2:84121613-84121632 MS.gene029227:intron 20.0%
! TGAAAATTATGTGATCTTTC+AGG - chr1.2:84121857-84121876 MS.gene029227:intron 25.0%
! TTAAATCAGACCATCAATTT+GGG + chr1.2:84122459-84122478 None:intergenic 25.0%
!! AATGTAAATTTTTGTGTGTG+GGG - chr1.2:84121730-84121749 MS.gene029227:intron 25.0%
!! ACAATGTAAATTTTTGTGTG+TGG - chr1.2:84121728-84121747 MS.gene029227:intron 25.0%
!! CAATGTAAATTTTTGTGTGT+GGG - chr1.2:84121729-84121748 MS.gene029227:intron 25.0%
!! CCCAATATAAATGATTTTAG+AGG + chr1.2:84121616-84121635 None:intergenic 25.0%
!!! CTTTAATTTGCAAATGATGT+CGG + chr1.2:84122761-84122780 None:intergenic 25.0%
!!! CTTTTTTTAAACTCAGTATC+CGG + chr1.2:84121447-84121466 None:intergenic 25.0%
!!! GTTAGTCGTTTATCTTTTTT+AGG - chr1.2:84122634-84122653 MS.gene029227:intron 25.0%
AAAGTTAGAAAGAGAGAAAG+AGG + chr1.2:84121410-84121429 None:intergenic 30.0%
AAATCATTTATATTGGGCTG+CGG - chr1.2:84121619-84121638 MS.gene029227:intron 30.0%
AACAAAATGTCTTAAGCTTC+TGG - chr1.2:84121945-84121964 MS.gene029227:intron 30.0%
ACTCTCATACATTATATTGC+AGG - chr1.2:84122890-84122909 MS.gene029227:CDS 30.0%
AGCTATTCTTAAACGTTCTT+TGG - chr1.2:84122843-84122862 MS.gene029227:CDS 30.0%
ATTATCATTCATACGAATGC+AGG - chr1.2:84122664-84122683 MS.gene029227:intron 30.0%
CATGCAATTCACTGTTTAAT+TGG - chr1.2:84121510-84121529 MS.gene029227:intron 30.0%
CTTAAATCAGACCATCAATT+TGG + chr1.2:84122460-84122479 None:intergenic 30.0%
GCTATTCTTAAACGTTCTTT+GGG - chr1.2:84122844-84122863 MS.gene029227:CDS 30.0%
TAGTCTACAATCATACTACA+AGG + chr1.2:84121899-84121918 None:intergenic 30.0%
TTATACTCTTCAATTAGCTG+CGG + chr1.2:84122963-84122982 None:intergenic 30.0%
TTCAGTCTAATTACAAGTGT+CGG + chr1.2:84122040-84122059 None:intergenic 30.0%
! AGACTATAACACCTCTTTTT+GGG - chr1.2:84121680-84121699 MS.gene029227:intron 30.0%
! ATGTAAATTTTTGTGTGTGG+GGG - chr1.2:84121731-84121750 MS.gene029227:intron 30.0%
! ATGTTTCTATCTTCGATTCA+TGG - chr1.2:84121769-84121788 MS.gene029227:intron 30.0%
! CAAATTGATGGTCTGATTTA+AGG - chr1.2:84122458-84122477 MS.gene029227:intron 30.0%
! TAGACTATAACACCTCTTTT+TGG - chr1.2:84121679-84121698 MS.gene029227:intron 30.0%
! TGATATGATATTACTAGCCT+AGG - chr1.2:84122820-84122839 MS.gene029227:CDS 30.0%
AACGTTTAAGAATAGCTCCT+AGG + chr1.2:84122840-84122859 None:intergenic 35.0%
AATCAATGAAAGCCAGTTCA+AGG - chr1.2:84121280-84121299 MS.gene029227:intron 35.0%
ACGTTAGAAGAATGACTTTG+AGG - chr1.2:84122182-84122201 MS.gene029227:intron 35.0%
AGTACTAATAAGCCTCTGTT+TGG + chr1.2:84122607-84122626 None:intergenic 35.0%
CTGTGCGTAGATTTAAATTG+CGG - chr1.2:84121540-84121559 MS.gene029227:intron 35.0%
GCAACGAATTCAACTAAAAC+CGG + chr1.2:84121329-84121348 None:intergenic 35.0%
TAATAAGCCTCTGTTTGGTA+TGG + chr1.2:84122602-84122621 None:intergenic 35.0%
TAGTTGAATTCGTTGCTACT+TGG - chr1.2:84121333-84121352 MS.gene029227:intron 35.0%
TATACTCTTCAATTAGCTGC+GGG + chr1.2:84122962-84122981 None:intergenic 35.0%
TTGTCCAAAACCCAAATTGA+TGG - chr1.2:84122446-84122465 MS.gene029227:intron 35.0%
! GACTATAACACCTCTTTTTG+GGG - chr1.2:84121681-84121700 MS.gene029227:intron 35.0%
! GCAAATTCAACAGCATTTTG+CGG + chr1.2:84121582-84121601 None:intergenic 35.0%
!!! AATTTGGGTTTTGGACAAGA+GGG + chr1.2:84122444-84122463 None:intergenic 35.0%
AAGCCTATGAAACACGGATA+CGG + chr1.2:84122132-84122151 None:intergenic 40.0%
AAGTCATTCTTCTAACGTCG+CGG + chr1.2:84122180-84122199 None:intergenic 40.0%
ACCCTGATACTCTTCAAGAA+CGG - chr1.2:84122999-84123018 MS.gene029227:CDS 40.0%
CCTAAGTTTACAGTGAGTTG+CGG - chr1.2:84121248-84121267 MS.gene029227:intron 40.0%
GAAGAGGTAATTGTACGAAC+CGG + chr1.2:84121119-84121138 None:intergenic 40.0%
GGTGTGTTAGCATTCATGAT+AGG - chr1.2:84122479-84122498 MS.gene029227:intron 40.0%
TAAGGGAAGAGATGAGGATA+CGG + chr1.2:84121147-84121166 None:intergenic 40.0%
TAGCATTCATGATAGGATGC+CGG - chr1.2:84122486-84122505 MS.gene029227:intron 40.0%
TCAATACGGTTTCCTTGAAC+TGG + chr1.2:84121295-84121314 None:intergenic 40.0%
TCTTCGATTCATGGTACATG+TGG - chr1.2:84121778-84121797 MS.gene029227:intron 40.0%
TGCTGTTGAATTTGCAGTAG+TGG - chr1.2:84121587-84121606 MS.gene029227:intron 40.0%
TTATGCAACACCCCAAAAAG+AGG + chr1.2:84121694-84121713 None:intergenic 40.0%
!! CAGACCATCAATTTGGGTTT+TGG + chr1.2:84122453-84122472 None:intergenic 40.0%
!! GCAAATGATGTCGGCTTTAA+GGG + chr1.2:84122752-84122771 None:intergenic 40.0%
!! GCTTTAAGGGTAGAATCTCA+GGG + chr1.2:84122739-84122758 None:intergenic 40.0%
!! TGCAAATGATGTCGGCTTTA+AGG + chr1.2:84122753-84122772 None:intergenic 40.0%
!! TTCTTGAAGAGTATCAGGGT+TGG + chr1.2:84122999-84123018 None:intergenic 40.0%
!!! CAATTTGGGTTTTGGACAAG+AGG + chr1.2:84122445-84122464 None:intergenic 40.0%
ACATGTGGATTTCACTCGAC+AGG - chr1.2:84121793-84121812 MS.gene029227:intron 45.0%
AGCATTCATGATAGGATGCC+GGG - chr1.2:84122487-84122506 MS.gene029227:intron 45.0%
AGCTATGGAATCCATAGCTC+AGG - chr1.2:84121382-84121401 MS.gene029227:intron 45.0%
ATCCGTGTTTCATAGGCTTC+TGG - chr1.2:84122133-84122152 MS.gene029227:intron 45.0%
ATGAAACACGGATACGGACA+TGG + chr1.2:84122126-84122145 None:intergenic 45.0%
ATTAGCGTTTGCTTGCGAGT+TGG - chr1.2:84122249-84122268 MS.gene029227:intron 45.0%
CAAATCAACACACAGTGACC+CGG + chr1.2:84122508-84122527 None:intergenic 45.0%
CACCAGAAGCCTATGAAACA+CGG + chr1.2:84122138-84122157 None:intergenic 45.0%
CCATAGCTGGAGTGATCAAA+CGG + chr1.2:84121370-84121389 None:intergenic 45.0%
CCCTGATACTCTTCAAGAAC+GGG - chr1.2:84123000-84123019 MS.gene029227:CDS 45.0%
CCGCAACTCACTGTAAACTT+AGG + chr1.2:84121251-84121270 None:intergenic 45.0%
CCTGATACTCTTCAAGAACG+GGG - chr1.2:84123001-84123020 MS.gene029227:CDS 45.0%
CGGACGCTCAGATTTCAATA+CGG + chr1.2:84121309-84121328 None:intergenic 45.0%
CGTATTGAAATCTGAGCGTC+CGG - chr1.2:84121307-84121326 MS.gene029227:intron 45.0%
GGTAATTGTACGAACCGGAA+CGG + chr1.2:84121114-84121133 None:intergenic 45.0%
TACAGTGAGTTGCGGTATCA+CGG - chr1.2:84121256-84121275 MS.gene029227:intron 45.0%
TGAGCTATGGATTCCATAGC+TGG + chr1.2:84121383-84121402 None:intergenic 45.0%
TGAGGATACGGAGATTGAAG+AGG + chr1.2:84121135-84121154 None:intergenic 45.0%
TGTCCGTATCCGTGTTTCAT+AGG - chr1.2:84122126-84122145 MS.gene029227:intron 45.0%
TTAGCGTTTGCTTGCGAGTT+GGG - chr1.2:84122250-84122269 MS.gene029227:intron 45.0%
TTTGAAGGGAGGACTTTGGA+GGG - chr1.2:84122274-84122293 MS.gene029227:intron 45.0%
! AAGCTTCTGGCTATGAAGCA+CGG - chr1.2:84121958-84121977 MS.gene029227:intron 45.0%
! GAATTCGTTGCTACTTGGTG+CGG - chr1.2:84121338-84121357 MS.gene029227:intron 45.0%
!! AGAAAGAGGTACCTGAGCTA+TGG + chr1.2:84121396-84121415 None:intergenic 45.0%
!! CCCGTTCTTGAAGAGTATCA+GGG + chr1.2:84123003-84123022 None:intergenic 45.0%
!! CTTTCAGGTGCTGCTTTGAT+TGG - chr1.2:84121872-84121891 MS.gene029227:intron 45.0%
!! GGCTTTAAGGGTAGAATCTC+AGG + chr1.2:84122740-84122759 None:intergenic 45.0%
!! GGGGTGTTGCATAAGACAAT+AGG - chr1.2:84121700-84121719 MS.gene029227:intron 45.0%
!! TTTTGAAGGGAGGACTTTGG+AGG - chr1.2:84122273-84122292 MS.gene029227:intron 45.0%
!!! CTTGCGAGTTGGGTTTTGAA+GGG - chr1.2:84122260-84122279 MS.gene029227:intron 45.0%
!!! ATTTGATATTTTTAAAAAAT+TGG - chr1.2:84122317-84122336 MS.gene029227:intron 5.0%
AAGAACGGGGAGGAATTTCC+AGG - chr1.2:84123014-84123033 MS.gene029227:CDS 50.0%
ACGGACACTCCTCGTATTAG+GGG - chr1.2:84121977-84121996 MS.gene029227:intron 50.0%
ACGTGGTAAGGGAAGAGATG+AGG + chr1.2:84121153-84121172 None:intergenic 50.0%
AGTGAGCGAAGCTGAAGTTG+AGG + chr1.2:84121078-84121097 None:intergenic 50.0%
ATTGTACGAACCGGAACGGT+TGG + chr1.2:84121110-84121129 None:intergenic 50.0%
CACGGACACTCCTCGTATTA+GGG - chr1.2:84121976-84121995 MS.gene029227:intron 50.0%
CCGTTTGATCACTCCAGCTA+TGG - chr1.2:84121367-84121386 MS.gene029227:intron 50.0%
GATACTCTTCAAGAACGGGG+AGG - chr1.2:84123004-84123023 MS.gene029227:CDS 50.0%
GCTACTGCCATACCAAACAG+AGG - chr1.2:84122592-84122611 MS.gene029227:intron 50.0%
GGAATTTCCAGGAAGCAGGA+AGG - chr1.2:84123025-84123044 MS.gene029227:CDS 50.0%
TCTAACTCTCCCAACCGTTC+CGG - chr1.2:84121097-84121116 MS.gene029227:CDS 50.0%
TTCCCTTACCACGTTCTCAC+CGG - chr1.2:84121159-84121178 MS.gene029227:CDS 50.0%
TTGTACGAACCGGAACGGTT+GGG + chr1.2:84121109-84121128 None:intergenic 50.0%
TTTCCAGGAAGCAGGAAGGA+AGG - chr1.2:84123029-84123048 MS.gene029227:CDS 50.0%
! AGAGTCTTTGCCGAGTTGAC+CGG + chr1.2:84121181-84121200 None:intergenic 50.0%
! CAGCATTTTGCGGTTTGCAG+CGG + chr1.2:84121572-84121591 None:intergenic 50.0%
!! CCCCGTTCTTGAAGAGTATC+AGG + chr1.2:84123004-84123023 None:intergenic 50.0%
!! GCTTGCGAGTTGGGTTTTGA+AGG - chr1.2:84122259-84122278 MS.gene029227:intron 50.0%
!! TACAAGTGTCGGTGTCGTGT+CGG + chr1.2:84122029-84122048 None:intergenic 50.0%
!!! GGGTTTTGAAGGGAGGACTT+TGG - chr1.2:84122270-84122289 MS.gene029227:intron 50.0%
!!! TGGGTTTTGGACAAGAGGGA+GGG + chr1.2:84122440-84122459 None:intergenic 50.0%
!!! TTGGGTTTTGGACAAGAGGG+AGG + chr1.2:84122441-84122460 None:intergenic 50.0%
CACGTTCTCACCGGTCAACT+CGG - chr1.2:84121168-84121187 MS.gene029227:CDS 55.0%
GACCGGTGAGAACGTGGTAA+GGG + chr1.2:84121164-84121183 None:intergenic 55.0%
GCACGGACACTCCTCGTATT+AGG - chr1.2:84121975-84121994 MS.gene029227:intron 55.0%
GCTGGAGTGATCAAACGGCA+AGG + chr1.2:84121365-84121384 None:intergenic 55.0%
GGGAGGAATTTCCAGGAAGC+AGG - chr1.2:84123021-84123040 MS.gene029227:CDS 55.0%
TGACCGGTGAGAACGTGGTA+AGG + chr1.2:84121165-84121184 None:intergenic 55.0%
!! TATTAGGGGTGTCCCGGTGT+CGG - chr1.2:84121991-84122010 MS.gene029227:intron 55.0%
!! TCCTCGTATTAGGGGTGTCC+CGG - chr1.2:84121985-84122004 MS.gene029227:intron 55.0%
!!! GCGAGTTGGGTTTTGAAGGG+AGG - chr1.2:84122263-84122282 MS.gene029227:intron 55.0%
ACCGGGACACCCCTAATACG+AGG + chr1.2:84121989-84122008 None:intergenic 60.0%
ACGGATACGGACATGGACGC+GGG + chr1.2:84122119-84122138 None:intergenic 60.0%
CACGACAAGTGTCCGACACC+GGG + chr1.2:84122006-84122025 None:intergenic 60.0%
CACGGATACGGACATGGACG+CGG + chr1.2:84122120-84122139 None:intergenic 60.0%
GCACCTTCCTTCCTGCTTCC+TGG + chr1.2:84123035-84123054 None:intergenic 60.0%
GCACGACAAGTGTCCGACAC+CGG + chr1.2:84122007-84122026 None:intergenic 60.0%
! CGAGTTGACCGGTGAGAACG+TGG + chr1.2:84121170-84121189 None:intergenic 60.0%
CATGGACGCGGGACACGACA+CGG + chr1.2:84122108-84122127 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 84121062 84123064 84121062 ID=MS.gene029227
chr1.2 mRNA 84121062 84123064 84121062 ID=MS.gene029227.t1;Parent=MS.gene029227
chr1.2 exon 84122723 84123064 84122723 ID=MS.gene029227.t1.exon1;Parent=MS.gene029227.t1
chr1.2 CDS 84122723 84123064 84122723 ID=cds.MS.gene029227.t1;Parent=MS.gene029227.t1
chr1.2 exon 84121062 84121214 84121062 ID=MS.gene029227.t1.exon2;Parent=MS.gene029227.t1
chr1.2 CDS 84121062 84121214 84121062 ID=cds.MS.gene029227.t1;Parent=MS.gene029227.t1
Gene Sequence

>MS.gene029227

ATGGATACGGTGACCTCAACTTCAGCTTCGCTCACTCTAACTCTCCCAACCGTTCCGGTTCGTACAATTACCTCTTCAATCTCCGTATCCTCATCTCTTCCCTTACCACGTTCTCACCGGTCAACTCGGCAAAGACTCTACTCTCTAAAAAGAAGCTTCTCGAATTCTTCTTCTTCTTATGCTGTTCCTAAGTTTACAGTGAGTTGCGGTATCACGGAAATCAATGAAAGCCAGTTCAAGGAAACCGTATTGAAATCTGAGCGTCCGGTTTTAGTTGAATTCGTTGCTACTTGGTGCGGTCCTTGCCGTTTGATCACTCCAGCTATGGAATCCATAGCTCAGGTACCTCTTTCTCTCTTTCTAACTTTTTATTTTGTTTTTGCCGGATACTGAGTTTAAAAAAAGTGTATTTTTTTTCTTAATTGAAACTAACTTTAATTGCATTATGCATGCAATTCACTGTTTAATTGGAACACTTCTGTGCGTAGATTTAAATTGCGGTTGTGTCCGCTGCAAACCGCAAAATGCTGTTGAATTTGCAGTAGTGGATACCTCTAAAATCATTTATATTGGGCTGCGGAACTTAATTGAAACTGAAAGCAATGTTTTTGTGTGCGTAGACTATAACACCTCTTTTTGGGGTGTTGCATAAGACAATAGGTGTTAACAATGTAAATTTTTGTGTGTGGGGGTCTTTTGTTTTGTGTATGTTTCTATCTTCGATTCATGGTACATGTGGATTTCACTCGACAGGAACAATGTTCTTTGTACTTGTTTGTGATAATAGATGTTTTGTGAAAATTATGTGATCTTTCAGGTGCTGCTTTGATTGGTCCTTGTAGTATGATTGTAGACTAAATCTCAATTTTGCAAATCACATTACAACAAAATGTCTTAAGCTTCTGGCTATGAAGCACGGACACTCCTCGTATTAGGGGTGTCCCGGTGTCGGACACTTGTCGTGCCGACACGACACCGACACTTGTAATTAGACTGAATTATGTGATTTTTTCAAATTATTAGTTGTGTCGGCGTGTCAGTGTCCGTGTCGTGTCCCGCGTCCATGTCCGTATCCGTGTTTCATAGGCTTCTGGTGATTGTTGCAAGTGCAATAACCGCGACGTTAGAAGAATGACTTTGAGGAAACAACATTTCTCTTTGTAATCTGTCTTCATTCTGTGATAAAAATTAGCGTTTGCTTGCGAGTTGGGTTTTGAAGGGAGGACTTTGGAGGGTTAAGTTTATATCTTATATTATTTGATATTTTTAAAAAATTGGATGAACATGATAAATGATCATGTAATACTTCAATCACACTTAATTTATTTTTAAAAATGTTTATAGTGTCTTCAATTTTATTAAGAAAAAGGTCTTTCCCTCCCTCTTGTCCAAAACCCAAATTGATGGTCTGATTTAAGGTGTGTTAGCATTCATGATAGGATGCCGGGTCACTGTGTGTTGATTTGAATCTATAATTTCGAGCGACGTAAGAAGTACAGTTAGTACTGATTGAAATGTGAGAAAAGCAATGCTACTGCCATACCAAACAGAGGCTTATTAGTACTGTGCTTTGTTAGTCGTTTATCTTTTTTAGGTTAATGCATTATCATTCATACGAATGCAGGACATGTAAGAGACATTAAGTGAAAAAAAATTAATAGATAGTTATTGAGGCCCTGAGATTCTACCCTTAAAGCCGACATCATTTGCAAATTAAAGTCAATAAAAAATAGAATGCTTTATAATTTGTAGAATGATTGATATGATATTACTAGCCTAGGAGCTATTCTTAAACGTTCTTTGGGATCTTAGTGTTTCTCAACTGAATACTCTCATACATTATATTGCAGGAATATGCAGACAGATTAACAGTTGTAAAGATTGATCATGATGCTAACCCGCAGCTAATTGAAGAGTATAAAGTTTATGGACTTCCAACCCTGATACTCTTCAAGAACGGGGAGGAATTTCCAGGAAGCAGGAAGGAAGGTGCAATTACAAAG
Protein sequence

>MS.gene029227.t1

MDTVTSTSASLTLTLPTVPVRTITSSISVSSSLPLPRSHRSTRQRLYSLKRSFSNSSSSYAVPKFTVSCGITEINESQFKETVLKSERPVLVEFVATWCGPCRLITPAMESIAQEYADRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGEEFPGSRKEGAITK