Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029264.t1 | XP_013470352.1 | 99.7 | 895 | 3 | 0 | 1 | 895 | 1 | 895 | 0.00E+00 | 1666 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029264.t1 | Q8H0U4 | 70.7 | 893 | 259 | 3 | 3 | 895 | 2 | 891 | 0.0e+00 | 1273.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029264.t1 | A0A072W2D6 | 99.7 | 895 | 3 | 0 | 1 | 895 | 1 | 895 | 0.0e+00 | 1666.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072926 | MS.gene029264 | PPI |
| MS.gene072924 | MS.gene029264 | PPI |
| MS.gene029264 | MS.gene014809 | PPI |
| MS.gene32604 | MS.gene029264 | PPI |
| MS.gene029264 | MS.gene32606 | PPI |
| MS.gene029264 | MS.gene014807 | PPI |
| MS.gene029264 | MS.gene072925 | PPI |
| MS.gene029264 | MS.gene014808 | PPI |
| MS.gene32605 | MS.gene029264 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029264.t1 | MTR_1g112920 | 99.665 | 895 | 3 | 0 | 1 | 895 | 1 | 895 | 0.0 | 1835 |
| MS.gene029264.t1 | MTR_1g112920 | 99.382 | 809 | 5 | 0 | 1 | 809 | 1 | 809 | 0.0 | 1650 |
| MS.gene029264.t1 | MTR_8g099785 | 21.540 | 831 | 482 | 35 | 28 | 774 | 12 | 756 | 9.15e-22 | 102 |
| MS.gene029264.t1 | MTR_3g491860 | 23.618 | 597 | 336 | 25 | 68 | 601 | 51 | 590 | 7.58e-20 | 95.9 |
| MS.gene029264.t1 | MTR_3g491840 | 22.074 | 598 | 371 | 20 | 68 | 612 | 51 | 606 | 1.62e-18 | 91.3 |
| MS.gene029264.t1 | MTR_2g006750 | 21.082 | 536 | 341 | 13 | 36 | 554 | 20 | 490 | 2.60e-17 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029264.t1 | AT2G16950 | 75.140 | 893 | 219 | 3 | 3 | 895 | 2 | 891 | 0.0 | 1399 |
| MS.gene029264.t1 | AT2G16950 | 74.805 | 897 | 219 | 4 | 3 | 895 | 2 | 895 | 0.0 | 1392 |
| MS.gene029264.t1 | AT2G16960 | 51.264 | 554 | 252 | 6 | 357 | 895 | 2 | 552 | 0.0 | 549 |
| MS.gene029264.t1 | AT2G16960 | 51.418 | 282 | 114 | 3 | 317 | 598 | 1 | 259 | 5.93e-86 | 284 |
| MS.gene029264.t1 | AT2G16960 | 47.984 | 248 | 116 | 3 | 661 | 895 | 258 | 505 | 5.22e-63 | 221 |
| MS.gene029264.t1 | AT5G53480 | 22.826 | 552 | 328 | 17 | 68 | 573 | 53 | 552 | 2.01e-21 | 100 |
| MS.gene029264.t1 | AT3G08947 | 24.566 | 346 | 188 | 10 | 238 | 555 | 19 | 319 | 1.20e-16 | 85.1 |
| MS.gene029264.t1 | AT3G08947 | 24.566 | 346 | 188 | 10 | 238 | 555 | 19 | 319 | 1.57e-16 | 84.7 |
| MS.gene029264.t1 | AT2G16953 | 45.783 | 83 | 17 | 2 | 726 | 808 | 9 | 63 | 6.81e-13 | 64.7 |
Find 230 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCTCTTGATTTGCTTTC+TGG | 0.001329 | 1.4:+86838261 | MS.gene029264:CDS |
| TATTTCTTCCCAGATTATTT+AGG | 0.165061 | 1.4:+86832670 | MS.gene029264:CDS |
| GATTGGAATATTGTTGAATT+TGG | 0.172792 | 1.4:-86829375 | None:intergenic |
| CTCTTGAATCCTGTGAATTT+TGG | 0.201749 | 1.4:+86833947 | MS.gene029264:CDS |
| GGGTCTTCTTCGAAGAATTT+TGG | 0.204358 | 1.4:+86836750 | MS.gene029264:CDS |
| CAAGGAGATCTGCACCTTAT+TGG | 0.211567 | 1.4:+86829300 | MS.gene029264:CDS |
| ACAATTTGACAGCGTTCTTA+TGG | 0.212851 | 1.4:+86836729 | MS.gene029264:CDS |
| GTACATCGGTGTCAAGAATT+TGG | 0.218570 | 1.4:-86832620 | None:intergenic |
| TTCACGTATTGTTGGTATTC+AGG | 0.235848 | 1.4:-86830471 | None:intergenic |
| CAGGCCAATCCTGCTGCAGC+TGG | 0.248030 | 1.4:+86838210 | MS.gene029264:intron |
| CAGGTCAAAGCCAATCCTTC+TGG | 0.254724 | 1.4:+86842875 | MS.gene029264:intron |
| AGAAATTTGTTGCTCCAATA+AGG | 0.264624 | 1.4:-86829314 | None:intergenic |
| GTTGACATGCATAGGAAATA+AGG | 0.265987 | 1.4:+86843016 | MS.gene029264:intron |
| GTTTAGCAAATTTATTATTC+AGG | 0.266638 | 1.4:+86836221 | MS.gene029264:CDS |
| GATATTCTCTCAAACGTCTT+TGG | 0.272366 | 1.4:+86835036 | MS.gene029264:CDS |
| ATTTCTTCCCAGATTATTTA+GGG | 0.299791 | 1.4:+86832671 | MS.gene029264:CDS |
| TGATGTTACCCTAAATAATC+TGG | 0.300241 | 1.4:-86832679 | None:intergenic |
| TACAAGGGCTTGCAATAATT+CGG | 0.300709 | 1.4:-86830598 | None:intergenic |
| CAAAGTGCATTTGCCTTACT+TGG | 0.306195 | 1.4:+86839251 | MS.gene029264:CDS |
| TACATCGGTGTCAAGAATTT+GGG | 0.317331 | 1.4:-86832619 | None:intergenic |
| TTGTCAACACATGGAATTTA+CGG | 0.320017 | 1.4:+86834992 | MS.gene029264:CDS |
| TTGATCCATGGATACATATA+AGG | 0.331730 | 1.4:-86832982 | None:intergenic |
| AGCATGAAATACTTCGTATC+AGG | 0.336523 | 1.4:-86836185 | None:intergenic |
| GAGAAAGAAGATGCCTTTAG+AGG | 0.340072 | 1.4:+86842759 | MS.gene029264:CDS |
| ATCAGTGTTGTTGTTCAAAC+TGG | 0.347298 | 1.4:+86830558 | MS.gene029264:CDS |
| AAGCACCTGATGGTTGCATT+TGG | 0.352910 | 1.4:+86836973 | MS.gene029264:CDS |
| CCATACTGCAGCCACATCTA+AGG | 0.353767 | 1.4:+86833872 | MS.gene029264:intron |
| CAATTTGACAGCGTTCTTAT+GGG | 0.369383 | 1.4:+86836730 | MS.gene029264:CDS |
| AGCACCTGATGGTTGCATTT+GGG | 0.375893 | 1.4:+86836974 | MS.gene029264:CDS |
| CTTTAAATCACCTCAACAAT+AGG | 0.377945 | 1.4:-86835084 | None:intergenic |
| ATTGTTGAAGTCAGGAAGAT+TGG | 0.379166 | 1.4:-86829392 | None:intergenic |
| TTCAGCAAATTGAGTGAATC+CGG | 0.379593 | 1.4:-86837953 | None:intergenic |
| AATTTGCTGAACCTGTGTTT+AGG | 0.380548 | 1.4:+86837965 | MS.gene029264:CDS |
| AGCCCCAGCTGCAGCAGGAT+TGG | 0.381992 | 1.4:-86838214 | None:intergenic |
| CCGCTGATAAGTCTCAGATT+TGG | 0.382450 | 1.4:+86829350 | MS.gene029264:CDS |
| TGCTGCCACTTCTCAATTAA+CGG | 0.388192 | 1.4:-86837358 | None:intergenic |
| ATGAGGTAATTGTTGAAGTC+AGG | 0.393517 | 1.4:-86829400 | None:intergenic |
| ATGTGTGTGGGTTAGGGTAT+CGG | 0.398560 | 1.4:+86836688 | MS.gene029264:intron |
| AGGCCAATCCTGCTGCAGCT+GGG | 0.399079 | 1.4:+86838211 | MS.gene029264:intron |
| GTCAAATTGTTCGTAACCCT+TGG | 0.399119 | 1.4:-86836716 | None:intergenic |
| GCGCACACATACCAGTTGTT+TGG | 0.401100 | 1.4:-86839570 | None:intergenic |
| AATAATGCATGCTGGGCAAT+TGG | 0.401733 | 1.4:+86839696 | MS.gene029264:CDS |
| ATGAGAATGTCAAGATAAAC+AGG | 0.402241 | 1.4:-86837331 | None:intergenic |
| ATCTCCGACGGTTGACAACT+TGG | 0.403039 | 1.4:-86835384 | None:intergenic |
| ACAAGGGCTTGCAATAATTC+GGG | 0.405569 | 1.4:-86830597 | None:intergenic |
| GAACTCTAGCTGAAGCTGTT+GGG | 0.406676 | 1.4:+86837198 | MS.gene029264:CDS |
| AAATGTACAGGAAATTTCTA+AGG | 0.406680 | 1.4:+86839650 | MS.gene029264:intron |
| TTCGGCAACGATGGCGGCGG+CGG | 0.408972 | 1.4:+86829243 | None:intergenic |
| ACCTCTGCATGCTGAAGAAT+TGG | 0.416754 | 1.4:-86841553 | None:intergenic |
| TCCTTGAAGCCTTGCTCTTG+TGG | 0.420545 | 1.4:-86829283 | None:intergenic |
| GGCCAATCCTGCTGCAGCTG+GGG | 0.422969 | 1.4:+86838212 | MS.gene029264:intron |
| TGGCAGTGGAATAGAGAGTT+TGG | 0.427529 | 1.4:+86838299 | MS.gene029264:CDS |
| GGAAATTTCTAAGGTGCATC+AGG | 0.428251 | 1.4:+86839659 | MS.gene029264:intron |
| CTAGAACCTTAGCCAATGTC+TGG | 0.433718 | 1.4:-86838011 | None:intergenic |
| AATTGGAGAATTAGCAGTTA+AGG | 0.443187 | 1.4:+86839713 | MS.gene029264:CDS |
| TGAACTTGCCTCCAAACAAC+TGG | 0.443517 | 1.4:+86839559 | MS.gene029264:CDS |
| TGAAGTCCGTCCGTCTATCT+TGG | 0.443843 | 1.4:+86833477 | MS.gene029264:CDS |
| TTTCACGTATCAAGGTTTCA+TGG | 0.444226 | 1.4:+86834777 | MS.gene029264:CDS |
| ACTCTGATTTCACGTATTGT+TGG | 0.445336 | 1.4:-86830479 | None:intergenic |
| AACCTCGATTTCACGTATCA+AGG | 0.445946 | 1.4:+86834769 | MS.gene029264:CDS |
| TTCTCAACCTGATCGAGATC+AGG | 0.450786 | 1.4:+86834666 | MS.gene029264:CDS |
| GTGGAGGTTCGACAGGCTGC+AGG | 0.450835 | 1.4:+86830402 | MS.gene029264:CDS |
| TCAGAGTTGCTGCCTTGTCT+TGG | 0.450996 | 1.4:+86830495 | MS.gene029264:CDS |
| TAACACTGGGGAGGCTTGCA+TGG | 0.452151 | 1.4:+86841691 | MS.gene029264:CDS |
| TTTAAGTGTAATTTCATGCC+TGG | 0.452548 | 1.4:+86841528 | MS.gene029264:CDS |
| GGTTGCATTTGGGAAATATC+AGG | 0.455320 | 1.4:+86836984 | MS.gene029264:CDS |
| GGTCTTGCATGGGTATAAAC+AGG | 0.456424 | 1.4:+86843068 | MS.gene029264:CDS |
| TGTGTGTGGGTTAGGGTATC+GGG | 0.457317 | 1.4:+86836689 | MS.gene029264:intron |
| GCACTTGGTGCCATAGGCGA+GGG | 0.460140 | 1.4:+86835440 | MS.gene029264:CDS |
| TTGTTACAGGCACTGGGTCC+CGG | 0.460458 | 1.4:+86837934 | MS.gene029264:intron |
| AGACCTTGTATCACCACATA+TGG | 0.461098 | 1.4:+86841722 | MS.gene029264:CDS |
| TGAAGAGCTGGCACCACGCT+TGG | 0.463352 | 1.4:+86836939 | MS.gene029264:CDS |
| TCGAGCAAGGTCTCCAAGTA+AGG | 0.463436 | 1.4:-86839264 | None:intergenic |
| GCAAGCCCTTGTAAGTTGCT+TGG | 0.463586 | 1.4:+86830608 | MS.gene029264:CDS |
| TTCATTAAGAAAGCTATCGT+TGG | 0.466949 | 1.4:+86832823 | MS.gene029264:CDS |
| TGCTCTTGTGGTTGCCACGA+TGG | 0.468773 | 1.4:-86829271 | None:intergenic |
| TCTGGGAAGAAATATATTGA+TGG | 0.469870 | 1.4:-86832661 | None:intergenic |
| TACTGAGCCCCAGCTGCAGC+AGG | 0.470834 | 1.4:-86838219 | None:intergenic |
| AATTTCTGTGGAGGTTCGAC+AGG | 0.471977 | 1.4:+86830395 | MS.gene029264:CDS |
| GAAGCTGCCGTCTTGGCACT+TGG | 0.472209 | 1.4:+86835425 | MS.gene029264:CDS |
| TTAATGAAGCGTGAGGTGAT+TGG | 0.472656 | 1.4:-86832808 | None:intergenic |
| ATTGATGCACCCCTCGCCTA+TGG | 0.472848 | 1.4:-86835450 | None:intergenic |
| TGTTGGGGCAGAGCTGAATC+AGG | 0.472935 | 1.4:+86837214 | MS.gene029264:CDS |
| GAGATGATGGTTGGAAAGAA+AGG | 0.473248 | 1.4:+86835402 | MS.gene029264:CDS |
| GGTTTCACAATGTTCTTTGA+GGG | 0.475278 | 1.4:+86839184 | MS.gene029264:intron |
| CTCTGCTAAGCCTGGTACAT+CGG | 0.475304 | 1.4:-86832634 | None:intergenic |
| TTGTCAACCGTCGGAGATGA+TGG | 0.475872 | 1.4:+86835389 | MS.gene029264:CDS |
| TCAAATTGTTCGTAACCCTT+GGG | 0.482167 | 1.4:-86836715 | None:intergenic |
| TTAAATTGTATACATTCCTC+AGG | 0.483514 | 1.4:-86830443 | None:intergenic |
| GGAACTCTAGCTGAAGCTGT+TGG | 0.485991 | 1.4:+86837197 | MS.gene029264:CDS |
| TTAGGGTATCGGGCATCCCA+AGG | 0.486599 | 1.4:+86836699 | MS.gene029264:intron |
| TACTGTCCAAGCAACTTACA+AGG | 0.487673 | 1.4:-86830614 | None:intergenic |
| ATATGTGGTGATACAAGGTC+TGG | 0.487991 | 1.4:-86841720 | None:intergenic |
| TCTGGACTAACAGAGGGTCT+TGG | 0.492966 | 1.4:+86838279 | MS.gene029264:CDS |
| ACCACAAGAGCAAGGCTTCA+AGG | 0.493504 | 1.4:+86829282 | MS.gene029264:CDS |
| ATAGGCGAGGGGTGCATCAA+TGG | 0.494250 | 1.4:+86835452 | MS.gene029264:CDS |
| CTTCATCTTCTCCCGTGCTC+AGG | 0.496141 | 1.4:+86829423 | MS.gene029264:CDS |
| GGCACTTGGTGCCATAGGCG+AGG | 0.496324 | 1.4:+86835439 | MS.gene029264:CDS |
| CATAGCACATAGACCTCTAA+AGG | 0.497484 | 1.4:-86842772 | None:intergenic |
| GGAAACTTATCATCAAGAAG+AGG | 0.498404 | 1.4:-86836162 | None:intergenic |
| AGGTTTCACAATGTTCTTTG+AGG | 0.500017 | 1.4:+86839183 | MS.gene029264:intron |
| AGAAAATAGTGCAATAACAC+TGG | 0.500123 | 1.4:+86841677 | MS.gene029264:CDS |
| TACTCTGATGCCTATTGTTG+AGG | 0.503181 | 1.4:+86835074 | MS.gene029264:CDS |
| GGATGATAATAAGCGTGTAC+AGG | 0.504024 | 1.4:+86836771 | MS.gene029264:CDS |
| GATTTCGGCAACGATGGCGG+CGG | 0.504335 | 1.4:+86829240 | None:intergenic |
| GTAGGAGGCTGCTGAAGAGC+TGG | 0.505364 | 1.4:+86836927 | MS.gene029264:intron |
| TCATTAAGAAAGCTATCGTT+GGG | 0.507655 | 1.4:+86832824 | MS.gene029264:CDS |
| ACTTAGAGCTCCAGAAGGAT+TGG | 0.507834 | 1.4:-86842885 | None:intergenic |
| CCGTGGCAAATAATGCATGC+TGG | 0.511391 | 1.4:+86839688 | MS.gene029264:CDS |
| CATGCTGAAGAATTGGTACC+AGG | 0.511727 | 1.4:-86841546 | None:intergenic |
| GAAGTCTGCCAGGTCTTGCA+TGG | 0.512364 | 1.4:+86843057 | MS.gene029264:CDS |
| TCCATGGATCAATATCTTCA+AGG | 0.514235 | 1.4:+86832993 | MS.gene029264:CDS |
| AGAAAGGGAAGCTGCCGTCT+TGG | 0.515248 | 1.4:+86835418 | MS.gene029264:CDS |
| ATTTCCCAAATGCAACCATC+AGG | 0.515910 | 1.4:-86836978 | None:intergenic |
| CTAACAGAGGGTCTTGGCAG+TGG | 0.521808 | 1.4:+86838285 | MS.gene029264:CDS |
| CACACATACCAGTTGTTTGG+AGG | 0.522579 | 1.4:-86839567 | None:intergenic |
| GCAGATATTGTTGTCAAACA+TGG | 0.522794 | 1.4:+86834501 | MS.gene029264:intron |
| GATGTTACCCTAAATAATCT+GGG | 0.525662 | 1.4:-86832678 | None:intergenic |
| CAAGTAAGGCAAATGCACTT+TGG | 0.525940 | 1.4:-86839250 | None:intergenic |
| AGATGCTGCGCAATGGAGCA+TGG | 0.527099 | 1.4:+86843319 | MS.gene029264:intron |
| GTCTTGGCACTTGGTGCCAT+AGG | 0.527194 | 1.4:+86835434 | MS.gene029264:CDS |
| AAGCAGACCTGATCTCGATC+AGG | 0.528456 | 1.4:-86834673 | None:intergenic |
| CGTGGCAAATAATGCATGCT+GGG | 0.532263 | 1.4:+86839689 | MS.gene029264:CDS |
| ATTCTTGACACCGATGTACC+AGG | 0.532980 | 1.4:+86832624 | MS.gene029264:CDS |
| CAATACAACATTGCAAAAGT+AGG | 0.535845 | 1.4:-86839208 | None:intergenic |
| AACTCTAGCTGAAGCTGTTG+GGG | 0.536483 | 1.4:+86837199 | MS.gene029264:CDS |
| TAGGCTTACTGGAATAAGAC+GGG | 0.537920 | 1.4:-86834405 | None:intergenic |
| GAAATTACACTTAAAACAAA+CGG | 0.538928 | 1.4:-86841520 | None:intergenic |
| AGATGATGGTTGGAAAGAAA+GGG | 0.540726 | 1.4:+86835403 | MS.gene029264:CDS |
| ATGGGCCGCTCTGCTAAGCC+TGG | 0.541464 | 1.4:-86832642 | None:intergenic |
| TGAAATTTGTTACAGGCACT+GGG | 0.542098 | 1.4:+86837928 | MS.gene029264:intron |
| AGTCCGTCCGTCTATCTTGG+AGG | 0.542642 | 1.4:+86833480 | MS.gene029264:CDS |
| TGGAGCATTTCATGCAACCT+TGG | 0.543238 | 1.4:+86841742 | MS.gene029264:CDS |
| TTTCATGCTGGACAGTATCT+CGG | 0.543512 | 1.4:+86836199 | MS.gene029264:CDS |
| CTGGGAAGAAATATATTGAT+GGG | 0.543520 | 1.4:-86832660 | None:intergenic |
| CTTTAGAGGTCTATGTGCTA+TGG | 0.547073 | 1.4:+86842773 | MS.gene029264:CDS |
| AAATCACATGGAAGGTGCAA+TGG | 0.547875 | 1.4:+86830644 | MS.gene029264:CDS |
| GCTCCATATGTGGTGATACA+AGG | 0.548018 | 1.4:-86841725 | None:intergenic |
| TTAGGCCTTATATGTATCCA+TGG | 0.548665 | 1.4:+86832977 | MS.gene029264:intron |
| GACAATACCTCTGGCAGATG+AGG | 0.549518 | 1.4:-86835482 | None:intergenic |
| TTTACACAATGAAGTCTGCC+AGG | 0.551434 | 1.4:+86843047 | MS.gene029264:CDS |
| CAACCGTCGGAGATGATGGT+TGG | 0.552627 | 1.4:+86835393 | MS.gene029264:CDS |
| GATGTGAAGCACTCTAGAAG+TGG | 0.553176 | 1.4:-86837409 | None:intergenic |
| CAGTAGTGATTTAAATCACA+TGG | 0.555357 | 1.4:+86830632 | MS.gene029264:CDS |
| GTGCAGCAGATAAACACATA+AGG | 0.557393 | 1.4:+86830517 | MS.gene029264:CDS |
| TTGCTTTCTGGACTAACAGA+GGG | 0.557462 | 1.4:+86838273 | MS.gene029264:CDS |
| GCATGAAATACTTCGTATCA+GGG | 0.559620 | 1.4:-86836184 | None:intergenic |
| TACTGCAGAAGTGCGGAAGT+TGG | 0.562642 | 1.4:+86833040 | MS.gene029264:CDS |
| ACCTTGAAGATATTGATCCA+TGG | 0.563420 | 1.4:-86832994 | None:intergenic |
| TCAGACCCAGACATTGGCTA+AGG | 0.565324 | 1.4:+86838005 | MS.gene029264:CDS |
| TGTGTAAAGCCATTGCAAGT+TGG | 0.567608 | 1.4:+86842921 | MS.gene029264:CDS |
| ACATACATGCCAACTTGCAA+TGG | 0.570331 | 1.4:-86842930 | None:intergenic |
| AGAATTGTATATGATGCTGT+TGG | 0.571114 | 1.4:+86837176 | MS.gene029264:CDS |
| CAAATAGTACCAAAATTCAC+AGG | 0.573838 | 1.4:-86833956 | None:intergenic |
| AACACTGGGGAGGCTTGCAT+GGG | 0.576589 | 1.4:+86841692 | MS.gene029264:CDS |
| GAATGAAGATACCTGAGCAC+GGG | 0.578328 | 1.4:-86829434 | None:intergenic |
| CCAGCATGCATTATTTGCCA+CGG | 0.578982 | 1.4:-86839688 | None:intergenic |
| GATGCTGCGCAATGGAGCAT+GGG | 0.582692 | 1.4:+86843320 | MS.gene029264:intron |
| GTTATATAGATGCTGCGCAA+TGG | 0.582846 | 1.4:+86843312 | MS.gene029264:intron |
| TTGCTGAACCTGTGTTTAGG+AGG | 0.584270 | 1.4:+86837968 | MS.gene029264:CDS |
| GAAACTTATCATCAAGAAGA+GGG | 0.586624 | 1.4:-86836161 | None:intergenic |
| AACTTCCGCACTTCTGCAGT+AGG | 0.586898 | 1.4:-86833038 | None:intergenic |
| GTTTATACCCATGCAAGACC+TGG | 0.588423 | 1.4:-86843065 | None:intergenic |
| TATAATTCAGACCCAGACAT+TGG | 0.589089 | 1.4:+86837999 | MS.gene029264:CDS |
| AGTGTTGTTGTTCAAACTGG+AGG | 0.589586 | 1.4:+86830561 | MS.gene029264:CDS |
| TTAGGCTTACTGGAATAAGA+CGG | 0.590304 | 1.4:-86834406 | None:intergenic |
| GGACCAGTGTATGTCTGCAT+TGG | 0.592264 | 1.4:+86843341 | MS.gene029264:CDS |
| TGCCACCGTTAATTGAGAAG+TGG | 0.593114 | 1.4:+86837353 | MS.gene029264:CDS |
| TCAGCAAATTGAGTGAATCC+GGG | 0.593150 | 1.4:-86837952 | None:intergenic |
| TTTCCAACCATCATCTCCGA+CGG | 0.597210 | 1.4:-86835396 | None:intergenic |
| AATCATATTAAAGCACCTGA+TGG | 0.597348 | 1.4:+86836963 | MS.gene029264:CDS |
| TATGGCACCAAGTGCCAAGA+CGG | 0.600274 | 1.4:-86835432 | None:intergenic |
| TGCAATGGATGCATTATCCA+AGG | 0.601884 | 1.4:+86830659 | MS.gene029264:CDS |
| GAAAATAGTGCAATAACACT+GGG | 0.602429 | 1.4:+86841678 | MS.gene029264:CDS |
| TGAACAGGGAATTTCTGTGG+AGG | 0.603671 | 1.4:+86830386 | MS.gene029264:intron |
| AAACACATAAGGTCTACGAC+TGG | 0.605568 | 1.4:+86830528 | MS.gene029264:CDS |
| CACTTGGTGCCATAGGCGAG+GGG | 0.605861 | 1.4:+86835441 | MS.gene029264:CDS |
| GTGATTTGGCTAGGTGTGTG+TGG | 0.606145 | 1.4:+86839505 | MS.gene029264:intron |
| CAAGGACGCAGATGAAGAAG+TGG | 0.606775 | 1.4:+86833924 | MS.gene029264:CDS |
| CAGCATCATATACAATTCTG+AGG | 0.609698 | 1.4:-86837172 | None:intergenic |
| CACGGGAGAAGATGAAGATG+AGG | 0.610536 | 1.4:-86829417 | None:intergenic |
| ACATTAAACTTACTCGAGCA+AGG | 0.610835 | 1.4:-86839277 | None:intergenic |
| TGATAATAAGCGTGTACAGG+AGG | 0.610882 | 1.4:+86836774 | MS.gene029264:CDS |
| ATGACGATGTTGTCAACACA+TGG | 0.610953 | 1.4:+86834983 | MS.gene029264:CDS |
| TCGATCACATTCCTTAGATG+TGG | 0.611334 | 1.4:-86833883 | None:intergenic |
| GCTCCAATGCAGACATACAC+TGG | 0.614134 | 1.4:-86843344 | None:intergenic |
| TGATACGAAGTATTTCATGC+TGG | 0.614417 | 1.4:+86836187 | MS.gene029264:CDS |
| AGTGATTTAAATCACATGGA+AGG | 0.616174 | 1.4:+86830636 | MS.gene029264:CDS |
| AACCTTGATACGTGAAATCG+AGG | 0.617848 | 1.4:-86834771 | None:intergenic |
| TTATCTGCTGCACCAAGACA+AGG | 0.618570 | 1.4:-86830507 | None:intergenic |
| GTCCAAACCTCCAAGATAGA+CGG | 0.620276 | 1.4:-86833487 | None:intergenic |
| ACTTCCGCACTTCTGCAGTA+GGG | 0.623309 | 1.4:-86833037 | None:intergenic |
| TGTTGCAAAAGCAGAACAAG+CGG | 0.625501 | 1.4:-86836797 | None:intergenic |
| CAATAGGCATCAGAGTAGGA+AGG | 0.628208 | 1.4:-86835068 | None:intergenic |
| TAGGGTATCGGGCATCCCAA+GGG | 0.630072 | 1.4:+86836700 | MS.gene029264:intron |
| AAGTCTGCCAGGTCTTGCAT+GGG | 0.631867 | 1.4:+86843058 | MS.gene029264:CDS |
| AGCTGGGGCTCAGTATGACA+AGG | 0.634404 | 1.4:+86838227 | MS.gene029264:CDS |
| TCGTGGCAACCACAAGAGCA+AGG | 0.637116 | 1.4:+86829274 | MS.gene029264:CDS |
| TTTAATATGATTTCCAAGCG+TGG | 0.644920 | 1.4:-86836952 | None:intergenic |
| TAGAACCTTAGCCAATGTCT+GGG | 0.646402 | 1.4:-86838010 | None:intergenic |
| AGCTTTCTTAATGAAGCGTG+AGG | 0.646529 | 1.4:-86832815 | None:intergenic |
| CAGGCCAAGTTGTCAACCGT+CGG | 0.648622 | 1.4:+86835380 | MS.gene029264:intron |
| TGCATGAAATGCTCCATATG+TGG | 0.649161 | 1.4:-86841735 | None:intergenic |
| TGAATCGCTTATTGAAGCCG+AGG | 0.649193 | 1.4:+86834540 | MS.gene029264:CDS |
| TTTATGCACCTCCTAAACAC+AGG | 0.650495 | 1.4:-86837976 | None:intergenic |
| ACCAATTCTTCAGCATGCAG+AGG | 0.652188 | 1.4:+86841552 | MS.gene029264:CDS |
| AGAATGAAGATACCTGAGCA+CGG | 0.654486 | 1.4:-86829435 | None:intergenic |
| GTATATGTTGCAAGTCAACA+AGG | 0.659849 | 1.4:+86833906 | MS.gene029264:CDS |
| CAAGAATTTCAGACAAACGA+GGG | 0.660281 | 1.4:-86839538 | None:intergenic |
| TTTGCTTTCTGGACTAACAG+AGG | 0.661941 | 1.4:+86838272 | MS.gene029264:CDS |
| TCAACAATAGGCATCAGAGT+AGG | 0.667528 | 1.4:-86835072 | None:intergenic |
| TCAAGAATTTCAGACAAACG+AGG | 0.668611 | 1.4:-86839539 | None:intergenic |
| GGTGCATCAGGCTATTTCCG+TGG | 0.668981 | 1.4:+86839671 | MS.gene029264:CDS |
| CATGAAATACTTCGTATCAG+GGG | 0.669623 | 1.4:-86836183 | None:intergenic |
| AGCGAACTTAGAGCTCCAGA+AGG | 0.670498 | 1.4:-86842890 | None:intergenic |
| ATAGTGCAATAACACTGGGG+AGG | 0.677121 | 1.4:+86841682 | MS.gene029264:CDS |
| TGCCACTTCTCAATTAACGG+TGG | 0.677949 | 1.4:-86837355 | None:intergenic |
| ACTGTCCAAGCAACTTACAA+GGG | 0.681669 | 1.4:-86830613 | None:intergenic |
| TATATCTGAAGAATAACCTG+AGG | 0.683811 | 1.4:+86830427 | MS.gene029264:CDS |
| ACATCGGTGTCAAGAATTTG+GGG | 0.688752 | 1.4:-86832618 | None:intergenic |
| TCTTTATCCTCATCTGCCAG+AGG | 0.693093 | 1.4:+86835475 | MS.gene029264:CDS |
| ATGACCCTACTGCAGAAGTG+CGG | 0.693454 | 1.4:+86833033 | MS.gene029264:CDS |
| ATGTACCAGGCTTAGCAGAG+CGG | 0.696873 | 1.4:+86832637 | MS.gene029264:CDS |
| AAACCTCCAAGATAGACGGA+CGG | 0.697580 | 1.4:-86833483 | None:intergenic |
| ATTGACAGAGCATTGCACCA+AGG | 0.701124 | 1.4:-86841759 | None:intergenic |
| CGGCGGCGGTGACACCATCG+TGG | 0.714804 | 1.4:+86829257 | MS.gene029264:CDS |
| AGGCTTACTGGAATAAGACG+GGG | 0.733611 | 1.4:-86834404 | None:intergenic |
| CCAAATCTGAGACTTATCAG+CGG | 0.743479 | 1.4:-86829350 | None:intergenic |
| AAAATAGTGCAATAACACTG+GGG | 0.776697 | 1.4:+86841679 | MS.gene029264:CDS |
| AAACTGGAGGAGTTTCACAG+TGG | 0.779982 | 1.4:+86830574 | MS.gene029264:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 86829253 | 86843404 | 86829253 | ID=MS.gene029264 |
| chr1.4 | mRNA | 86829253 | 86843404 | 86829253 | ID=MS.gene029264.t1;Parent=MS.gene029264 |
| chr1.4 | exon | 86829253 | 86829444 | 86829253 | ID=MS.gene029264.t1.exon1;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86829253 | 86829444 | 86829253 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86830393 | 86830680 | 86830393 | ID=MS.gene029264.t1.exon2;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86830393 | 86830680 | 86830393 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86832603 | 86832692 | 86832603 | ID=MS.gene029264.t1.exon3;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86832603 | 86832692 | 86832603 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86832803 | 86832880 | 86832803 | ID=MS.gene029264.t1.exon4;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86832803 | 86832880 | 86832803 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86832981 | 86833061 | 86832981 | ID=MS.gene029264.t1.exon5;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86832981 | 86833061 | 86832981 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86833451 | 86833501 | 86833451 | ID=MS.gene029264.t1.exon6;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86833451 | 86833501 | 86833451 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86833883 | 86833968 | 86833883 | ID=MS.gene029264.t1.exon7;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86833883 | 86833968 | 86833883 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86834352 | 86834418 | 86834352 | ID=MS.gene029264.t1.exon8;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86834352 | 86834418 | 86834352 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86834505 | 86834561 | 86834505 | ID=MS.gene029264.t1.exon9;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86834505 | 86834561 | 86834505 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86834658 | 86834687 | 86834658 | ID=MS.gene029264.t1.exon10;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86834658 | 86834687 | 86834658 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86834762 | 86834821 | 86834762 | ID=MS.gene029264.t1.exon11;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86834762 | 86834821 | 86834762 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86834979 | 86835095 | 86834979 | ID=MS.gene029264.t1.exon12;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86834979 | 86835095 | 86834979 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86835383 | 86835496 | 86835383 | ID=MS.gene029264.t1.exon13;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86835383 | 86835496 | 86835383 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86836144 | 86836242 | 86836144 | ID=MS.gene029264.t1.exon14;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86836144 | 86836242 | 86836144 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86836703 | 86836828 | 86836703 | ID=MS.gene029264.t1.exon15;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86836703 | 86836828 | 86836703 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86836931 | 86837005 | 86836931 | ID=MS.gene029264.t1.exon16;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86836931 | 86837005 | 86836931 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86837164 | 86837235 | 86837164 | ID=MS.gene029264.t1.exon17;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86837164 | 86837235 | 86837164 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86837331 | 86837441 | 86837331 | ID=MS.gene029264.t1.exon18;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86837331 | 86837441 | 86837331 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86837943 | 86838026 | 86837943 | ID=MS.gene029264.t1.exon19;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86837943 | 86838026 | 86837943 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86838213 | 86838320 | 86838213 | ID=MS.gene029264.t1.exon20;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86838213 | 86838320 | 86838213 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86839185 | 86839286 | 86839185 | ID=MS.gene029264.t1.exon21;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86839185 | 86839286 | 86839185 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86839518 | 86839580 | 86839518 | ID=MS.gene029264.t1.exon22;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86839518 | 86839580 | 86839518 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86839660 | 86839734 | 86839660 | ID=MS.gene029264.t1.exon23;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86839660 | 86839734 | 86839660 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86841502 | 86841573 | 86841502 | ID=MS.gene029264.t1.exon24;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86841502 | 86841573 | 86841502 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86841657 | 86841781 | 86841657 | ID=MS.gene029264.t1.exon25;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86841657 | 86841781 | 86841657 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86842743 | 86842794 | 86842743 | ID=MS.gene029264.t1.exon26;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86842743 | 86842794 | 86842743 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86842878 | 86842946 | 86842878 | ID=MS.gene029264.t1.exon27;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86842878 | 86842946 | 86842878 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86843030 | 86843089 | 86843030 | ID=MS.gene029264.t1.exon28;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86843030 | 86843089 | 86843030 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| chr1.4 | exon | 86843321 | 86843404 | 86843321 | ID=MS.gene029264.t1.exon29;Parent=MS.gene029264.t1 |
| chr1.4 | CDS | 86843321 | 86843404 | 86843321 | ID=cds.MS.gene029264.t1;Parent=MS.gene029264.t1 |
| Gene Sequence |
| Protein sequence |
