AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029581

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029581.t1 MTR_1g107480 99.497 596 3 0 4 599 2 597 0.0 1189
MS.gene029581.t1 MTR_4g005880 78.532 545 117 0 55 599 86 630 0.0 898
MS.gene029581.t1 MTR_3g005970 31.621 253 155 5 120 356 117 367 4.46e-29 119
MS.gene029581.t1 MTR_4g013100 28.235 255 174 4 120 373 68 314 1.75e-28 116
MS.gene029581.t1 MTR_4g013090 28.794 257 168 5 121 373 68 313 4.27e-28 115
MS.gene029581.t1 MTR_1g112510 33.910 289 161 8 98 361 63 346 1.26e-27 115
MS.gene029581.t1 MTR_4g012960 26.772 254 176 4 120 373 67 310 6.73e-26 108
MS.gene029581.t1 MTR_6g007170 30.924 249 162 4 121 362 122 367 1.61e-23 103
MS.gene029581.t1 MTR_4g013135 29.297 256 170 6 120 373 67 313 4.95e-21 94.7
MS.gene029581.t1 MTR_8g033390 28.788 264 171 5 121 380 76 326 8.68e-21 94.4
MS.gene029581.t1 MTR_2g101840 28.462 260 168 7 120 373 67 314 1.30e-19 90.5
MS.gene029581.t1 MTR_6g007175 28.629 248 150 5 121 362 91 317 3.22e-18 86.7
MS.gene029581.t1 MTR_8g033400 26.482 253 173 6 100 347 67 311 3.87e-17 83.6
MS.gene029581.t1 MTR_8g033410 25.197 254 177 5 121 368 79 325 4.49e-17 83.2
MS.gene029581.t1 MTR_7g075830 29.707 239 144 8 121 342 57 288 7.43e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029581.t1 AT4G34200 83.219 584 94 2 20 599 20 603 0.0 981
MS.gene029581.t1 AT3G19480 82.155 566 99 1 36 599 23 588 0.0 942
MS.gene029581.t1 AT1G17745 78.269 543 118 0 57 599 82 624 0.0 885
MS.gene029581.t1 AT1G17745 74.211 570 120 2 57 599 82 651 0.0 864
MS.gene029581.t1 AT1G72190 29.181 281 183 5 77 348 77 350 1.19e-27 115
MS.gene029581.t1 AT5G14780 31.667 240 160 3 127 362 112 351 5.90e-27 113
MS.gene029581.t1 AT5G14780 31.667 240 160 3 127 362 100 339 8.14e-27 112
MS.gene029581.t1 AT1G79870 28.627 255 171 6 121 373 68 313 1.18e-26 111
MS.gene029581.t1 AT5G14780 31.667 240 160 3 127 362 126 365 1.22e-26 112
MS.gene029581.t1 AT1G68010 32.753 287 167 7 98 361 63 346 4.10e-25 108
MS.gene029581.t1 AT1G68010 32.986 288 166 8 98 361 63 347 1.24e-23 103
MS.gene029581.t1 AT1G12550 28.631 241 165 4 121 359 75 310 1.45e-23 102
MS.gene029581.t1 AT1G68010 32.482 274 159 7 98 348 63 333 1.50e-23 103
MS.gene029581.t1 AT2G45630 28.125 256 173 6 121 373 91 338 4.02e-22 98.6
MS.gene029581.t1 AT1G79870 27.559 254 156 6 121 373 68 294 2.49e-21 95.1

Find 182 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCATTGAGCATCTTAT+TGG 0.186509 1.3:-73585556 None:intergenic
GGCGGAGGAGAGAGGGAGTT+TGG 0.212385 1.3:-73584291 None:intergenic
CTTGTTAGAGCATTGGATTC+TGG 0.237598 1.3:+73585651 MS.gene029581:CDS
GTGAAGGGAGACGGAGGGTT+TGG 0.252825 1.3:-73584247 None:intergenic
ACACTTGCTGTAATGGGATT+TGG 0.255805 1.3:+73585357 MS.gene029581:CDS
GCTAGTGCCATATCAGATTC+AGG 0.283199 1.3:+73586859 MS.gene029581:CDS
CATAACCAACTTGCTGTCTT+TGG 0.290705 1.3:-73585803 None:intergenic
ACATTTAATCTTACAACTTA+AGG 0.291198 1.3:-73587182 None:intergenic
GTTCACGAAAACACTGGATA+TGG 0.294301 1.3:-73586704 None:intergenic
TGTTGATCTTGCTGAGAAAC+TGG 0.306465 1.3:+73586546 MS.gene029581:CDS
TGAAGGGAGACGGAGGGTTT+GGG 0.332772 1.3:-73584246 None:intergenic
AAGGTAGCATTATACTTTGC+AGG 0.338794 1.3:+73586965 MS.gene029581:CDS
CGTGAAGTGTTTGAATCTTC+CGG 0.339399 1.3:+73584548 MS.gene029581:CDS
CACTTGCTGTAATGGGATTT+GGG 0.344965 1.3:+73585358 MS.gene029581:CDS
GGAGTTTGGAGGAGAGAGAA+AGG 0.350829 1.3:-73584277 None:intergenic
GCTGATCGTGCTCATGCTAT+TGG 0.358730 1.3:+73585456 MS.gene029581:CDS
GAGGAGAGAGTTATTCTTGA+TGG 0.369656 1.3:+73586775 MS.gene029581:CDS
TCTAACTCCTTTCTTCATCT+TGG 0.371423 1.3:-73585586 None:intergenic
GGGAAGACACTTGCTGTAAT+GGG 0.381131 1.3:+73585351 MS.gene029581:CDS
ACATGGTTAATACAGGGAAA+TGG 0.384206 1.3:+73585295 MS.gene029581:intron
GACCTCCCCTGAATCTGATA+TGG 0.384239 1.3:-73586866 None:intergenic
GAAGACGACGAGGGAACGGC+GGG 0.395159 1.3:-73584342 None:intergenic
AGCATCACAGAGAGAGATCT+TGG 0.396721 1.3:-73584495 None:intergenic
GAGATTCCACGTTAGCAATC+TGG 0.405437 1.3:-73586831 None:intergenic
AGACGAGTGTCAAGATCATC+AGG 0.412057 1.3:-73586646 None:intergenic
CCCACCTTTCCAATCATACC+TGG 0.415387 1.3:-73587000 None:intergenic
AGTAGCGTTAGCGGCGGCGG+CGG 0.415511 1.3:-73584222 None:intergenic
GCGGAGGGAGACGGAGAAGG+CGG 0.416963 1.3:-73584309 None:intergenic
ATCTTGGTGCAAAGCTCCTC+AGG 0.418039 1.3:-73584479 None:intergenic
CCACGTTAGCAATCTGGACT+TGG 0.423183 1.3:-73586825 None:intergenic
TGGGAAGACACTTGCTGTAA+TGG 0.425768 1.3:+73585350 MS.gene029581:CDS
GAGGGAGACGGAGAAGGCGG+AGG 0.427254 1.3:-73584306 None:intergenic
GGAAAGGTGGGAAGCATCTT+GGG 0.427465 1.3:+73587012 MS.gene029581:CDS
TATGTTGGAGTTTCCCTAGT+TGG 0.429161 1.3:+73585330 MS.gene029581:CDS
GTAGATCAACCAGGTATGAT+TGG 0.432608 1.3:+73586991 MS.gene029581:CDS
CAGCAAGTGTCTTCCCAACT+AGG 0.432947 1.3:-73585344 None:intergenic
GGGAAGATGGTGAAGGGAGA+CGG 0.433199 1.3:-73584256 None:intergenic
AAATAGCAGAAGCTGTCGTT+GGG 0.435352 1.3:+73585989 MS.gene029581:CDS
CACGGGATCGCGCTCTTAGC+TGG 0.436535 1.3:+73584695 MS.gene029581:CDS
CTCAAGGTTGTTGGTAGAGC+TGG 0.437574 1.3:+73584578 MS.gene029581:CDS
TGGAAAGGTGGGAAGCATCT+TGG 0.437963 1.3:+73587011 MS.gene029581:CDS
CATGGTTAATACAGGGAAAT+GGG 0.442636 1.3:+73585296 MS.gene029581:intron
GAGGAGAGAGAAAGGGAAGA+TGG 0.443990 1.3:-73584269 None:intergenic
AAACACTTCACGTGAGACTT+TGG 0.446385 1.3:-73584537 None:intergenic
GGAAGTAGCGTTAGCGGCGG+CGG 0.448739 1.3:-73584225 None:intergenic
CGCTACTGAACATGGTTGCT+TGG 0.449102 1.3:+73584631 MS.gene029581:CDS
GGGTAGGTTGGCTGTCCAAC+TGG 0.450313 1.3:+73586567 MS.gene029581:CDS
TTCAGGGGAGGTCACGGTGG+AGG 0.452073 1.3:+73586876 MS.gene029581:CDS
ATGTTGGAGTTTCCCTAGTT+GGG 0.453564 1.3:+73585331 MS.gene029581:CDS
AACCAACTTGCTGTCTTTGG+TGG 0.455394 1.3:-73585800 None:intergenic
GCTGAAAAGCTCGGCGAAGC+TGG 0.458612 1.3:+73584404 MS.gene029581:CDS
ATGAATTCAAGTGGATTCTC+AGG 0.462448 1.3:-73586802 None:intergenic
AAAGAATCTTTGCAAAGGAT+TGG 0.466060 1.3:+73587129 MS.gene029581:CDS
GCACGATCAGCAGGAGCATA+AGG 0.471790 1.3:-73585444 None:intergenic
GTAATGGGATTTGGGAAGGT+TGG 0.474064 1.3:+73585366 MS.gene029581:CDS
GGATGCACTTGTTAGAGCAT+TGG 0.476077 1.3:+73585644 MS.gene029581:CDS
CTGTCGTTGGGGCTTTGAAA+GGG 0.476987 1.3:+73586001 MS.gene029581:CDS
GGATTCTGGAATTGTAGCTC+AGG 0.477094 1.3:+73585665 MS.gene029581:CDS
GGAGGAGAGAGGGAGTTTGG+AGG 0.479184 1.3:-73584288 None:intergenic
TTGAGCATCTTATTGGTAGC+AGG 0.483290 1.3:-73585549 None:intergenic
AAGATCCAACCTTTGTAAGA+TGG 0.485383 1.3:-73586921 None:intergenic
GTAACTTACCTGAGCTTCCA+TGG 0.486993 1.3:-73585866 None:intergenic
TTCTCAGCAAGATCAACAAA+TGG 0.487878 1.3:-73586541 None:intergenic
TGCTAAGGGGCTTGGTATGA+AGG 0.488921 1.3:+73585407 MS.gene029581:CDS
AGATCCAACCTTTGTAAGAT+GGG 0.489776 1.3:-73586920 None:intergenic
GCCATCACAGCTTGCTTGCG+TGG 0.489963 1.3:-73587081 None:intergenic
TGGGAGAGAAGTAAGTATGT+TGG 0.490032 1.3:+73585315 MS.gene029581:CDS
GCTAGGCGTGCTAAGGGGCT+TGG 0.491466 1.3:+73585399 MS.gene029581:CDS
GGGTTTAGCGTCGAGGGAAG+AGG 0.493537 1.3:-73584369 None:intergenic
AAAACAAATTCTTCAACAGC+AGG 0.493626 1.3:-73587159 None:intergenic
TTATTGGTAGCAGGCGTAAG+AGG 0.493736 1.3:-73585540 None:intergenic
CGAAGACGACGAGGGAACGG+CGG 0.494219 1.3:-73584343 None:intergenic
CGGAGAAGGCGGAGGAGAGA+GGG 0.496667 1.3:-73584298 None:intergenic
ATTTGGGAAGGTTGGAACTG+AGG 0.497988 1.3:+73585374 MS.gene029581:CDS
AGACGAAGACGACGAGGGAA+CGG 0.498132 1.3:-73584346 None:intergenic
TGCCAGTACCATGGAAGCTC+AGG 0.500424 1.3:+73585858 MS.gene029581:CDS
GGTTTGGGAAGTAGCGTTAG+CGG 0.502137 1.3:-73584231 None:intergenic
GAAATAGCAGAAGCTGTCGT+TGG 0.503793 1.3:+73585988 MS.gene029581:CDS
AAGATGGTGAAGGGAGACGG+AGG 0.504509 1.3:-73584253 None:intergenic
CATGGCTAGAAATGTTGCTC+AGG 0.505750 1.3:+73584718 MS.gene029581:CDS
TTCACGAAAACACTGGATAT+GGG 0.506220 1.3:-73586703 None:intergenic
GTTACTGCAACACCTCATCT+TGG 0.506235 1.3:+73585835 MS.gene029581:CDS
TGAGGTTGCTAGGCGTGCTA+AGG 0.507332 1.3:+73585392 MS.gene029581:CDS
GGTGGAAGACTCAAGGTTGT+TGG 0.507539 1.3:+73584569 MS.gene029581:CDS
TACCTGAGCTTCCATGGTAC+TGG 0.508674 1.3:-73585860 None:intergenic
TTGGCTGTCCAACTGGTAGC+AGG 0.509470 1.3:+73586574 MS.gene029581:CDS
GAGTTTGGAGGAGAGAGAAA+GGG 0.509782 1.3:-73584276 None:intergenic
TGGTATTGATAACGTGGATC+TGG 0.510283 1.3:+73584604 MS.gene029581:CDS
AGAGAAAGGGAAGATGGTGA+AGG 0.510419 1.3:-73584263 None:intergenic
GGGGCGGAGGGAGACGGAGA+AGG 0.511281 1.3:-73584312 None:intergenic
AAGCAAGCTGTGATGGCAAT+CGG 0.512460 1.3:+73587087 MS.gene029581:CDS
ACGGAGAAGGCGGAGGAGAG+AGG 0.514088 1.3:-73584299 None:intergenic
GCTGTCGTTGGGGCTTTGAA+AGG 0.514440 1.3:+73586000 MS.gene029581:CDS
AACTTGCTGTCTTTGGTGGG+TGG 0.516646 1.3:-73585796 None:intergenic
TGCTGAGAAACTGGGTAGGT+TGG 0.518778 1.3:+73586555 MS.gene029581:CDS
TCAGGGGAGGTCACGGTGGA+GGG 0.520156 1.3:+73586877 MS.gene029581:CDS
CTAGTGCCATATCAGATTCA+GGG 0.520803 1.3:+73586860 MS.gene029581:CDS
GAGGTTGCTAGGCGTGCTAA+GGG 0.523235 1.3:+73585393 MS.gene029581:CDS
GAGAAAGGGAAGATGGTGAA+GGG 0.525178 1.3:-73584262 None:intergenic
AGACGACGAGGGAACGGCGG+GGG 0.527589 1.3:-73584340 None:intergenic
CTCCTCAGGAGTGAGATTGT+AGG 0.528475 1.3:-73584465 None:intergenic
ACCAGGTATGATTGGAAAGG+TGG 0.534240 1.3:+73586999 MS.gene029581:CDS
CGCGATCCCGTGTTCAGCGG+CGG 0.534842 1.3:-73584684 None:intergenic
ATAGCATGAGCACGATCAGC+AGG 0.535627 1.3:-73585453 None:intergenic
CTGTTGCCGCCGCTGAACAC+GGG 0.536140 1.3:+73584678 MS.gene029581:CDS
CTGGCCGCCGCTACTGAACA+TGG 0.544785 1.3:+73584623 MS.gene029581:CDS
CGCTTCCTCCTGCTACCAGT+TGG 0.547036 1.3:-73586582 None:intergenic
AGGTTGGAACTGAGGTTGCT+AGG 0.547137 1.3:+73585382 MS.gene029581:CDS
ACCAACTTGCTGTCTTTGGT+GGG 0.548749 1.3:-73585799 None:intergenic
GCTGATGCTTCTATCAAAGC+TGG 0.551395 1.3:+73584740 MS.gene029581:CDS
ACTGTTGCCGCCGCTGAACA+CGG 0.551728 1.3:+73584677 MS.gene029581:CDS
CCAAGTCCAGATTGCTAACG+TGG 0.553204 1.3:+73586825 MS.gene029581:CDS
TACTGCAGTCAATGCACCAA+TGG 0.553293 1.3:+73586035 MS.gene029581:CDS
ATCAGATTCAGGGGAGGTCA+CGG 0.555338 1.3:+73586870 MS.gene029581:CDS
CACGGTGGAGGGTCGTGTGA+AGG 0.556967 1.3:+73586888 MS.gene029581:CDS
TGCTGTAATGGGATTTGGGA+AGG 0.561363 1.3:+73585362 MS.gene029581:CDS
TCCACGCAAGCAAGCTGTGA+TGG 0.562816 1.3:+73587080 MS.gene029581:CDS
CTTCGTGCTATGATAACAAA+GGG 0.568014 1.3:+73586670 MS.gene029581:CDS
GACGGTGGGTTTAGCGTCGA+GGG 0.568041 1.3:-73584375 None:intergenic
GCGGCAACAGTGTTAGCAGT+GGG 0.570598 1.3:-73584665 None:intergenic
CTTTGCAAAGATTCTTTGCG+TGG 0.570600 1.3:-73587123 None:intergenic
AAGTGACTTACGCTTCCGCT+AGG 0.571734 1.3:+73586620 MS.gene029581:CDS
GAAGTTGATGTGAGTTTGGA+AGG 0.575576 1.3:+73586946 MS.gene029581:CDS
ATCTTCCGGTGGAAGACTCA+AGG 0.576123 1.3:+73584562 MS.gene029581:CDS
AATGTCAGCTTCATGAGTGT+TGG 0.576599 1.3:+73587048 MS.gene029581:CDS
TGTCGTTGGGGCTTTGAAAG+GGG 0.577535 1.3:+73586002 MS.gene029581:CDS
AGCAAGTGTCTTCCCAACTA+GGG 0.578467 1.3:-73585343 None:intergenic
CAACTGGTAGCAGGAGGAAG+CGG 0.583181 1.3:+73586583 MS.gene029581:CDS
CCAGGTATGATTGGAAAGGT+GGG 0.583244 1.3:+73587000 MS.gene029581:CDS
GTGGAGGGTCGTGTGAAGGA+TGG 0.585025 1.3:+73586892 MS.gene029581:CDS
AGATGGTGAAGGGAGACGGA+GGG 0.591266 1.3:-73584252 None:intergenic
GACTTCACTGCTAAACAAAG+AGG 0.591938 1.3:+73586739 MS.gene029581:CDS
TGGACTTGGATGAATTCAAG+TGG 0.592769 1.3:-73586811 None:intergenic
TCTTCGTGCTATGATAACAA+AGG 0.593071 1.3:+73586669 MS.gene029581:CDS
AGTACCTCTGAGGAAACCAT+TGG 0.593260 1.3:-73586051 None:intergenic
GATCCAACCTTTGTAAGATG+GGG 0.598278 1.3:-73586919 None:intergenic
TCAGCTTCATGAGTGTTGGA+AGG 0.600265 1.3:+73587052 MS.gene029581:CDS
AAGAGGAGACGAAGACGACG+AGG 0.601153 1.3:-73584352 None:intergenic
AGTGACTTACGCTTCCGCTA+GGG 0.601349 1.3:+73586621 MS.gene029581:CDS
GAGCGCGATCCCGTGTTCAG+CGG 0.601676 1.3:-73584687 None:intergenic
GATCGCGCTCTTAGCTGGCA+TGG 0.602254 1.3:+73584700 MS.gene029581:CDS
GTTGTTGGTAGAGCTGGTGT+TGG 0.603479 1.3:+73584584 MS.gene029581:CDS
CACGCAAAGAATCTTTGCAA+AGG 0.603720 1.3:+73587124 MS.gene029581:CDS
ATTGTTAATGTTGCTCGTGG+TGG 0.608712 1.3:+73585609 MS.gene029581:CDS
TCATCTTGGTGCCAGTACCA+TGG 0.610967 1.3:+73585849 MS.gene029581:CDS
GCAACCATGTTCAGTAGCGG+CGG 0.612837 1.3:-73584627 None:intergenic
GGACGGTGGGTTTAGCGTCG+AGG 0.613960 1.3:-73584376 None:intergenic
ATGGTACTGGCACCAAGATG+AGG 0.614100 1.3:-73585847 None:intergenic
AACAACCTTGAGTCTTCCAC+CGG 0.614270 1.3:-73584567 None:intergenic
GTCCTCGTCGCTGAAAAGCT+CGG 0.619802 1.3:+73584395 MS.gene029581:CDS
TTGGGAAGTAGCGTTAGCGG+CGG 0.621158 1.3:-73584228 None:intergenic
AACTAAGTTCACGAAAACAC+TGG 0.623332 1.3:-73586710 None:intergenic
TGCACCAATGGTTTCCTCAG+AGG 0.628022 1.3:+73586047 MS.gene029581:CDS
AGGTTGCTAGGCGTGCTAAG+GGG 0.630349 1.3:+73585394 MS.gene029581:CDS
TCAACCAGGTATGATTGGAA+AGG 0.630443 1.3:+73586996 MS.gene029581:CDS
GTTGATCTTGCTGAGAAACT+GGG 0.632655 1.3:+73586547 MS.gene029581:CDS
GGCGGCAACAGTGTTAGCAG+TGG 0.634521 1.3:-73584666 None:intergenic
AGAATTGTTAATGTTGCTCG+TGG 0.642633 1.3:+73585606 MS.gene029581:CDS
AGAGGAGACGAAGACGACGA+GGG 0.647210 1.3:-73584351 None:intergenic
ACTTCACTGCTAAACAAAGA+GGG 0.657467 1.3:+73586740 MS.gene029581:CDS
ACCCACCAAAGACAGCAAGT+TGG 0.658654 1.3:+73585798 MS.gene029581:CDS
GAAGTGTTTGAATCTTCCGG+TGG 0.658805 1.3:+73584551 MS.gene029581:CDS
ATCCAACCTTTGTAAGATGG+GGG 0.663549 1.3:-73586918 None:intergenic
TAGTGCCATATCAGATTCAG+GGG 0.665071 1.3:+73586861 MS.gene029581:CDS
GACGAGTGTCAAGATCATCA+GGG 0.667404 1.3:-73586645 None:intergenic
AAGATCATCAGGGGCCCTAG+CGG 0.668439 1.3:-73586635 None:intergenic
AAGAGGGCTAAGAATTACTG+AGG 0.668513 1.3:+73586756 MS.gene029581:CDS
TGCAGGCAAGTAGATCAACC+AGG 0.669453 1.3:+73586982 MS.gene029581:CDS
CTCCTACAATCTCACTCCTG+AGG 0.670177 1.3:+73584463 MS.gene029581:CDS
CAAGCAACCATGTTCAGTAG+CGG 0.672617 1.3:-73584630 None:intergenic
CAAAGAGATGAAATCAGCGG+TGG 0.673605 1.3:-73585511 None:intergenic
AGATTCAGGGGAGGTCACGG+TGG 0.674117 1.3:+73586873 MS.gene029581:CDS
GCTGTCCAACTGGTAGCAGG+AGG 0.676150 1.3:+73586577 MS.gene029581:CDS
AAGACGACGAGGGAACGGCG+GGG 0.677271 1.3:-73584341 None:intergenic
GATGCTCTCATCGTTCGCAG+TGG 0.681979 1.3:+73584512 MS.gene029581:CDS
ACGAGTGTCAAGATCATCAG+GGG 0.682389 1.3:-73586644 None:intergenic
TGCCATATCAGATTCAGGGG+AGG 0.684990 1.3:+73586864 MS.gene029581:CDS
AATAGCAGAAGCTGTCGTTG+GGG 0.700433 1.3:+73585990 MS.gene029581:CDS
GTGCAAAGAGATGAAATCAG+CGG 0.712158 1.3:-73585514 None:intergenic
ATCTTGCTGAGAAACTGGGT+AGG 0.734226 1.3:+73586551 MS.gene029581:CDS
TGGTGTTGGTATTGATAACG+TGG 0.740226 1.3:+73584598 MS.gene029581:CDS
TCGTGGTGGAGTCATTGACG+AGG 0.747608 1.3:+73585623 MS.gene029581:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTAAGTAAACTAAAAG+TGG - chr1.3:73585705-73585724 None:intergenic 15.0%
!!! TATTTTCATCATGAAATAAA+AGG - chr1.3:73586100-73586119 None:intergenic 15.0%
!!! TTTTTTAGTGTTAGTTATTT+GGG + chr1.3:73584849-73584868 MS.gene029581:intron 15.0%
!! CAAATTAAATACTAAAGTGA+AGG + chr1.3:73586302-73586321 MS.gene029581:intron 20.0%
!! TCATAATACAAAATGATTCA+TGG + chr1.3:73586424-73586443 MS.gene029581:intron 20.0%
!! TGAGATCTAATGATATATAT+GGG + chr1.3:73585021-73585040 MS.gene029581:intron 20.0%
!! TTGAGATCTAATGATATATA+TGG + chr1.3:73585020-73585039 MS.gene029581:intron 20.0%
!! TTTATATTGTTAACTACTAG+TGG + chr1.3:73584909-73584928 MS.gene029581:intron 20.0%
!! TTTGAGAAAATGACATAATT+CGG - chr1.3:73585198-73585217 None:intergenic 20.0%
!!! CAAAGAATTTAGAATGATTT+TGG - chr1.3:73586185-73586204 None:intergenic 20.0%
!!! GTTTTTTAGTGTTAGTTATT+TGG + chr1.3:73584848-73584867 MS.gene029581:intron 20.0%
!!! TCATATATTGAAAACGATTT+TGG + chr1.3:73586224-73586243 MS.gene029581:intron 20.0%
!!! TCGTTTTCAATATATGAATA+TGG - chr1.3:73586221-73586240 None:intergenic 20.0%
! AAAAACACAACAAAATCATC+AGG - chr1.3:73584834-73584853 None:intergenic 25.0%
! AGATCTAATGATATATATGG+GGG + chr1.3:73585023-73585042 MS.gene029581:intron 25.0%
! ATACAAAATGATTCATGGAT+TGG + chr1.3:73586429-73586448 MS.gene029581:intron 25.0%
! GAGATCTAATGATATATATG+GGG + chr1.3:73585022-73585041 MS.gene029581:intron 25.0%
! GATTTGAGAAATCTAATACA+AGG + chr1.3:73586334-73586353 MS.gene029581:intron 25.0%
!! CTTAATGAGTTTTTATTGCT+CGG + chr1.3:73586359-73586378 MS.gene029581:intron 25.0%
!! GCATAAGTTATTAGTTGATA+TGG + chr1.3:73585252-73585271 MS.gene029581:intron 25.0%
!! TAAAATTTTCTGTGTAAAGG+AGG + chr1.3:73584949-73584968 MS.gene029581:intron 25.0%
!! TGGTAAAATTTTCTGTGTAA+AGG + chr1.3:73584946-73584965 MS.gene029581:intron 25.0%
!!! AAAACGATTTTGGAACAAAA+TGG + chr1.3:73586234-73586253 MS.gene029581:intron 25.0%
!!! AGTATTTAATTTGAACCAGT+TGG - chr1.3:73586295-73586314 None:intergenic 25.0%
!!! ATTGAATTAGTGTTGATACA+TGG + chr1.3:73585278-73585297 MS.gene029581:intron 25.0%
AAAACAAATTCTTCAACAGC+AGG - chr1.3:73587162-73587181 None:intergenic 30.0%
AAAGAATCTTTGCAAAGGAT+TGG + chr1.3:73587129-73587148 MS.gene029581:CDS 30.0%
AACACCCATTACAGATTATA+CGG - chr1.3:73585074-73585093 None:intergenic 30.0%
AAGCTATAACTCATAGTCAT+AGG - chr1.3:73585903-73585922 None:intergenic 30.0%
ATAGTCATAGGCAATTACTT+AGG - chr1.3:73585891-73585910 None:intergenic 30.0%
GTTGATACATGGTTAATACA+GGG + chr1.3:73585289-73585308 MS.gene029581:intron 30.0%
TCTTCCGTATAATCTGTAAT+GGG + chr1.3:73585067-73585086 MS.gene029581:intron 30.0%
TGTTGATACATGGTTAATAC+AGG + chr1.3:73585288-73585307 MS.gene029581:intron 30.0%
TTATCTATATCCAAGCAACA+TGG + chr1.3:73586156-73586175 MS.gene029581:intron 30.0%
TTCTTCCGTATAATCTGTAA+TGG + chr1.3:73585066-73585085 MS.gene029581:intron 30.0%
TTTCAAAGGTTATTAGACAC+TGG - chr1.3:73585942-73585961 None:intergenic 30.0%
TTTGAAAATAATGACCAGGA+AGG + chr1.3:73585955-73585974 MS.gene029581:intron 30.0%
! AACCTTTGAAAATAATGACC+AGG + chr1.3:73585951-73585970 MS.gene029581:intron 30.0%
! ATGTTGCTTGGATATAGATA+AGG - chr1.3:73586157-73586176 None:intergenic 30.0%
! TAATAGTTTGTGTCTGTTTC+AGG + chr1.3:73585747-73585766 MS.gene029581:intron 30.0%
! TTCCTGGTCATTATTTTCAA+AGG - chr1.3:73585956-73585975 None:intergenic 30.0%
! TTTTTGTCCTCATATATACG+TGG + chr1.3:73584976-73584995 MS.gene029581:intron 30.0%
!! ATTGGAGTTGGTGATAAATT+TGG + chr1.3:73586447-73586466 MS.gene029581:intron 30.0%
!!! TTTTGAAGTTGATGTGAGTT+TGG + chr1.3:73586942-73586961 MS.gene029581:CDS 30.0%
AACTAAGTTCACGAAAACAC+TGG - chr1.3:73586713-73586732 None:intergenic 35.0%
AAGATCCAACCTTTGTAAGA+TGG - chr1.3:73586924-73586943 None:intergenic 35.0%
AAGGTAGCATTATACTTTGC+AGG + chr1.3:73586965-73586984 MS.gene029581:CDS 35.0%
ACATGGTTAATACAGGGAAA+TGG + chr1.3:73585295-73585314 MS.gene029581:intron 35.0%
ACTTCACTGCTAAACAAAGA+GGG + chr1.3:73586740-73586759 MS.gene029581:CDS 35.0%
AGAATTGTTAATGTTGCTCG+TGG + chr1.3:73585606-73585625 MS.gene029581:CDS 35.0%
AGATCCAACCTTTGTAAGAT+GGG - chr1.3:73586923-73586942 None:intergenic 35.0%
CATGGTTAATACAGGGAAAT+GGG + chr1.3:73585296-73585315 MS.gene029581:intron 35.0%
CTCATCATTGAGCATCTTAT+TGG - chr1.3:73585559-73585578 None:intergenic 35.0%
CTTCGTGCTATGATAACAAA+GGG + chr1.3:73586670-73586689 MS.gene029581:CDS 35.0%
GAAGCAGTAACAATATCAAG+AGG - chr1.3:73586130-73586149 None:intergenic 35.0%
GAGTTAACCACGTATATATG+AGG - chr1.3:73584986-73585005 None:intergenic 35.0%
GATAAAGCCAGCTTCAAAAT+TGG - chr1.3:73586395-73586414 None:intergenic 35.0%
GTAACAATATCAAGAGGCAA+AGG - chr1.3:73586124-73586143 None:intergenic 35.0%
TCTAACTCCTTTCTTCATCT+TGG - chr1.3:73585589-73585608 None:intergenic 35.0%
TCTTCGTGCTATGATAACAA+AGG + chr1.3:73586669-73586688 MS.gene029581:CDS 35.0%
TTCACGAAAACACTGGATAT+GGG - chr1.3:73586706-73586725 None:intergenic 35.0%
TTCTCAGCAAGATCAACAAA+TGG - chr1.3:73586544-73586563 None:intergenic 35.0%
! ACATTGTCACTTCTGATCAA+AGG + chr1.3:73585124-73585143 MS.gene029581:intron 35.0%
! ACTTTTGCCAAGATGAAGAA+AGG + chr1.3:73585579-73585598 MS.gene029581:CDS 35.0%
! ATGAATTCAAGTGGATTCTC+AGG - chr1.3:73586805-73586824 None:intergenic 35.0%
!! AATGATTCATGGATTGGAGT+TGG + chr1.3:73586435-73586454 MS.gene029581:intron 35.0%
!! ATTTTGGAAACCATGTTGCT+TGG - chr1.3:73586169-73586188 None:intergenic 35.0%
!! TGTAATGGGTGTTAATGTTG+TGG + chr1.3:73585081-73585100 MS.gene029581:intron 35.0%
!! TTGTTAACTACTAGTGGACT+AGG + chr1.3:73584915-73584934 MS.gene029581:intron 35.0%
AAACACTTCACGTGAGACTT+TGG - chr1.3:73584540-73584559 None:intergenic 40.0%
AAAGCCAGCTTCAAAATTGG+AGG - chr1.3:73586392-73586411 None:intergenic 40.0%
AAATAGCAGAAGCTGTCGTT+GGG + chr1.3:73585989-73586008 MS.gene029581:CDS 40.0%
AAGAGGGCTAAGAATTACTG+AGG + chr1.3:73586756-73586775 MS.gene029581:CDS 40.0%
AAGCCAGCTTCAAAATTGGA+GGG - chr1.3:73586391-73586410 None:intergenic 40.0%
AATGTCAGCTTCATGAGTGT+TGG + chr1.3:73587048-73587067 MS.gene029581:CDS 40.0%
ATCCAACCTTTGTAAGATGG+GGG - chr1.3:73586921-73586940 None:intergenic 40.0%
ATGTTGGAGTTTCCCTAGTT+GGG + chr1.3:73585331-73585350 MS.gene029581:CDS 40.0%
ATTAGACACTGGTGGCAAAA+GGG - chr1.3:73585931-73585950 None:intergenic 40.0%
ATTGTTAATGTTGCTCGTGG+TGG + chr1.3:73585609-73585628 MS.gene029581:CDS 40.0%
CAAAGGTTATTAGACACTGG+TGG - chr1.3:73585939-73585958 None:intergenic 40.0%
CACGCAAAGAATCTTTGCAA+AGG + chr1.3:73587124-73587143 MS.gene029581:CDS 40.0%
CTAGTGCCATATCAGATTCA+GGG + chr1.3:73586860-73586879 MS.gene029581:CDS 40.0%
CTTTGCAAAGATTCTTTGCG+TGG - chr1.3:73587126-73587145 None:intergenic 40.0%
GACTTCACTGCTAAACAAAG+AGG + chr1.3:73586739-73586758 MS.gene029581:CDS 40.0%
GAGGAGAGAGTTATTCTTGA+TGG + chr1.3:73586775-73586794 MS.gene029581:CDS 40.0%
GATCCAACCTTTGTAAGATG+GGG - chr1.3:73586922-73586941 None:intergenic 40.0%
GTAGATCAACCAGGTATGAT+TGG + chr1.3:73586991-73587010 MS.gene029581:CDS 40.0%
GTGCAAAGAGATGAAATCAG+CGG - chr1.3:73585517-73585536 None:intergenic 40.0%
GTTCACGAAAACACTGGATA+TGG - chr1.3:73586707-73586726 None:intergenic 40.0%
GTTGATCTTGCTGAGAAACT+GGG + chr1.3:73586547-73586566 MS.gene029581:CDS 40.0%
TAGTGCCATATCAGATTCAG+GGG + chr1.3:73586861-73586880 MS.gene029581:CDS 40.0%
TATGTTGGAGTTTCCCTAGT+TGG + chr1.3:73585330-73585349 MS.gene029581:CDS 40.0%
TATTAGACACTGGTGGCAAA+AGG - chr1.3:73585932-73585951 None:intergenic 40.0%
TCAACCAGGTATGATTGGAA+AGG + chr1.3:73586996-73587015 MS.gene029581:CDS 40.0%
TGGACTTGGATGAATTCAAG+TGG - chr1.3:73586814-73586833 None:intergenic 40.0%
TGGGAGAGAAGTAAGTATGT+TGG + chr1.3:73585315-73585334 MS.gene029581:CDS 40.0%
TGTTGATCTTGCTGAGAAAC+TGG + chr1.3:73586546-73586565 MS.gene029581:CDS 40.0%
TTAACACCTGCAAGTCACAA+AGG - chr1.3:73586510-73586529 None:intergenic 40.0%
TTTCAATAGCTACACCTTCC+TGG - chr1.3:73585972-73585991 None:intergenic 40.0%
TTTGTCACATATGCCGTTGT+CGG - chr1.3:73585174-73585193 None:intergenic 40.0%
! CGTGAAGTGTTTGAATCTTC+CGG + chr1.3:73584548-73584567 MS.gene029581:CDS 40.0%
! TAGTTTGTGTCTGTTTCAGG+CGG + chr1.3:73585750-73585769 MS.gene029581:intron 40.0%
! TGTTGAGCTTGTGAGTTTTG+AGG + chr1.3:73585479-73585498 MS.gene029581:CDS 40.0%
! TTCATTCCTTTGTGACTTGC+AGG + chr1.3:73586501-73586520 MS.gene029581:intron 40.0%
! TTGAGCATCTTATTGGTAGC+AGG - chr1.3:73585552-73585571 None:intergenic 40.0%
! TTGGTGATAAATTTGGCGAC+TGG + chr1.3:73586454-73586473 MS.gene029581:intron 40.0%
! TTTTGTTCCTAGTACCTCTG+AGG - chr1.3:73586064-73586083 None:intergenic 40.0%
!! ACACTTGCTGTAATGGGATT+TGG + chr1.3:73585357-73585376 MS.gene029581:CDS 40.0%
!! CACTTGCTGTAATGGGATTT+GGG + chr1.3:73585358-73585377 MS.gene029581:CDS 40.0%
!! CATAACCAACTTGCTGTCTT+TGG - chr1.3:73585806-73585825 None:intergenic 40.0%
!! CTTGTTAGAGCATTGGATTC+TGG + chr1.3:73585651-73585670 MS.gene029581:CDS 40.0%
!! GAAGTTGATGTGAGTTTGGA+AGG + chr1.3:73586946-73586965 MS.gene029581:CDS 40.0%
!! TGGTATTGATAACGTGGATC+TGG + chr1.3:73584604-73584623 MS.gene029581:CDS 40.0%
!! TGGTGTTGGTATTGATAACG+TGG + chr1.3:73584598-73584617 MS.gene029581:CDS 40.0%
!!! TATCCCTCCAATTTTGAAGC+TGG + chr1.3:73586385-73586404 MS.gene029581:intron 40.0%
AACAACCTTGAGTCTTCCAC+CGG - chr1.3:73584570-73584589 None:intergenic 45.0%
AAGCAAGCTGTGATGGCAAT+CGG + chr1.3:73587087-73587106 MS.gene029581:CDS 45.0%
AATAGCAGAAGCTGTCGTTG+GGG + chr1.3:73585990-73586009 MS.gene029581:CDS 45.0%
ACCAGGTATGATTGGAAAGG+TGG + chr1.3:73586999-73587018 MS.gene029581:CDS 45.0%
ACGAGTGTCAAGATCATCAG+GGG - chr1.3:73586647-73586666 None:intergenic 45.0%
AGACGAGTGTCAAGATCATC+AGG - chr1.3:73586649-73586668 None:intergenic 45.0%
AGAGAAAGGGAAGATGGTGA+AGG - chr1.3:73584266-73584285 None:intergenic 45.0%
AGCAAGTGTCTTCCCAACTA+GGG - chr1.3:73585346-73585365 None:intergenic 45.0%
AGCATCACAGAGAGAGATCT+TGG - chr1.3:73584498-73584517 None:intergenic 45.0%
ATCTTGCTGAGAAACTGGGT+AGG + chr1.3:73586551-73586570 MS.gene029581:CDS 45.0%
ATTTGGGAAGGTTGGAACTG+AGG + chr1.3:73585374-73585393 MS.gene029581:CDS 45.0%
CAAAGAGATGAAATCAGCGG+TGG - chr1.3:73585514-73585533 None:intergenic 45.0%
CAAGCAACCATGTTCAGTAG+CGG - chr1.3:73584633-73584652 None:intergenic 45.0%
CATGGCTAGAAATGTTGCTC+AGG + chr1.3:73584718-73584737 MS.gene029581:CDS 45.0%
CCAGGTATGATTGGAAAGGT+GGG + chr1.3:73587000-73587019 MS.gene029581:CDS 45.0%
GAAATAGCAGAAGCTGTCGT+TGG + chr1.3:73585988-73586007 MS.gene029581:CDS 45.0%
GACGAGTGTCAAGATCATCA+GGG - chr1.3:73586648-73586667 None:intergenic 45.0%
GAGAAAGGGAAGATGGTGAA+GGG - chr1.3:73584265-73584284 None:intergenic 45.0%
GAGATTCCACGTTAGCAATC+TGG - chr1.3:73586834-73586853 None:intergenic 45.0%
GAGTTTGGAGGAGAGAGAAA+GGG - chr1.3:73584279-73584298 None:intergenic 45.0%
GCTAGTGCCATATCAGATTC+AGG + chr1.3:73586859-73586878 MS.gene029581:CDS 45.0%
GCTGATGCTTCTATCAAAGC+TGG + chr1.3:73584740-73584759 MS.gene029581:CDS 45.0%
GTAACTTACCTGAGCTTCCA+TGG - chr1.3:73585869-73585888 None:intergenic 45.0%
GTTACTGCAACACCTCATCT+TGG + chr1.3:73585835-73585854 MS.gene029581:CDS 45.0%
TACTGCAGTCAATGCACCAA+TGG + chr1.3:73586035-73586054 MS.gene029581:CDS 45.0%
TCAACTGCTATGTGTCCAAC+TGG + chr1.3:73586277-73586296 MS.gene029581:intron 45.0%
TTAGACACTGGTGGCAAAAG+GGG - chr1.3:73585930-73585949 None:intergenic 45.0%
! AGTACCTCTGAGGAAACCAT+TGG - chr1.3:73586054-73586073 None:intergenic 45.0%
! GAAGTGTTTGAATCTTCCGG+TGG + chr1.3:73584551-73584570 MS.gene029581:CDS 45.0%
! GGATGCACTTGTTAGAGCAT+TGG + chr1.3:73585644-73585663 MS.gene029581:CDS 45.0%
! GTAATGGGATTTGGGAAGGT+TGG + chr1.3:73585366-73585385 MS.gene029581:CDS 45.0%
! TGCTGTAATGGGATTTGGGA+AGG + chr1.3:73585362-73585381 MS.gene029581:CDS 45.0%
! TTATTGGTAGCAGGCGTAAG+AGG - chr1.3:73585543-73585562 None:intergenic 45.0%
!! AACCAACTTGCTGTCTTTGG+TGG - chr1.3:73585803-73585822 None:intergenic 45.0%
!! ACCAACTTGCTGTCTTTGGT+GGG - chr1.3:73585802-73585821 None:intergenic 45.0%
!! ATGGTTTCCTCAGAGGTACT+AGG + chr1.3:73586054-73586073 MS.gene029581:intron 45.0%
!! GGATTCTGGAATTGTAGCTC+AGG + chr1.3:73585665-73585684 MS.gene029581:CDS 45.0%
!! GGGAAGACACTTGCTGTAAT+GGG + chr1.3:73585351-73585370 MS.gene029581:CDS 45.0%
!! TAGTGGACTAGGTGACGTAA+TGG + chr1.3:73584926-73584945 MS.gene029581:intron 45.0%
!! TCAGCTTCATGAGTGTTGGA+AGG + chr1.3:73587052-73587071 MS.gene029581:CDS 45.0%
!! TGGGAAGACACTTGCTGTAA+TGG + chr1.3:73585350-73585369 MS.gene029581:CDS 45.0%
!!! TGAGCTTGTGAGTTTTGAGG+AGG + chr1.3:73585482-73585501 MS.gene029581:CDS 45.0%
!! ACTTAAATTAATAATTAATT+GGG + chr1.3:73585715-73585734 MS.gene029581:intron 5.0%
!! TACTTAAATTAATAATTAAT+TGG + chr1.3:73585714-73585733 MS.gene029581:intron 5.0%
AAGTGACTTACGCTTCCGCT+AGG + chr1.3:73586620-73586639 MS.gene029581:CDS 50.0%
ACCCACCAAAGACAGCAAGT+TGG + chr1.3:73585798-73585817 MS.gene029581:CDS 50.0%
AGGTTGGAACTGAGGTTGCT+AGG + chr1.3:73585382-73585401 MS.gene029581:CDS 50.0%
AGTGACTTACGCTTCCGCTA+GGG + chr1.3:73586621-73586640 MS.gene029581:CDS 50.0%
ATAGCATGAGCACGATCAGC+AGG - chr1.3:73585456-73585475 None:intergenic 50.0%
ATCAGATTCAGGGGAGGTCA+CGG + chr1.3:73586870-73586889 MS.gene029581:CDS 50.0%
ATCTTCCGGTGGAAGACTCA+AGG + chr1.3:73584562-73584581 MS.gene029581:CDS 50.0%
CAGCAAGTGTCTTCCCAACT+AGG - chr1.3:73585347-73585366 None:intergenic 50.0%
CCAAGTCCAGATTGCTAACG+TGG + chr1.3:73586825-73586844 MS.gene029581:CDS 50.0%
CCACGTTAGCAATCTGGACT+TGG - chr1.3:73586828-73586847 None:intergenic 50.0%
CCCACCTTTCCAATCATACC+TGG - chr1.3:73587003-73587022 None:intergenic 50.0%
CGCTACTGAACATGGTTGCT+TGG + chr1.3:73584631-73584650 MS.gene029581:CDS 50.0%
CTCCTACAATCTCACTCCTG+AGG + chr1.3:73584463-73584482 MS.gene029581:CDS 50.0%
CTCCTCAGGAGTGAGATTGT+AGG - chr1.3:73584468-73584487 None:intergenic 50.0%
GACCTCCCCTGAATCTGATA+TGG - chr1.3:73586869-73586888 None:intergenic 50.0%
GAGGAGAGAGAAAGGGAAGA+TGG - chr1.3:73584272-73584291 None:intergenic 50.0%
GCTGATCGTGCTCATGCTAT+TGG + chr1.3:73585456-73585475 MS.gene029581:CDS 50.0%
GGAGTTTGGAGGAGAGAGAA+AGG - chr1.3:73584280-73584299 None:intergenic 50.0%
GGTGGAAGACTCAAGGTTGT+TGG + chr1.3:73584569-73584588 MS.gene029581:CDS 50.0%
GGTTTGGGAAGTAGCGTTAG+CGG - chr1.3:73584234-73584253 None:intergenic 50.0%
GTCCCCCATCTTACAAAGGT+TGG + chr1.3:73586916-73586935 MS.gene029581:CDS 50.0%
TACCTGAGCTTCCATGGTAC+TGG - chr1.3:73585863-73585882 None:intergenic 50.0%
TGAGTGTCTGACACCGACAA+CGG + chr1.3:73585158-73585177 MS.gene029581:intron 50.0%
TGCACCAATGGTTTCCTCAG+AGG + chr1.3:73586047-73586066 MS.gene029581:CDS 50.0%
TGCAGGCAAGTAGATCAACC+AGG + chr1.3:73586982-73587001 MS.gene029581:CDS 50.0%
TGCCATATCAGATTCAGGGG+AGG + chr1.3:73586864-73586883 MS.gene029581:CDS 50.0%
TGCTGAGAAACTGGGTAGGT+TGG + chr1.3:73586555-73586574 MS.gene029581:CDS 50.0%
TGGTGTCCCCCATCTTACAA+AGG + chr1.3:73586912-73586931 MS.gene029581:CDS 50.0%
! ATCTTGGTGCAAAGCTCCTC+AGG - chr1.3:73584482-73584501 None:intergenic 50.0%
! CTCAAGGTTGTTGGTAGAGC+TGG + chr1.3:73584578-73584597 MS.gene029581:CDS 50.0%
! GGCGGCTCTTGATGTTTTCA+CGG + chr1.3:73585768-73585787 MS.gene029581:intron 50.0%
! GGCTCTTGATGTTTTCACGG+TGG + chr1.3:73585771-73585790 MS.gene029581:CDS 50.0%
! GTTGTTGGTAGAGCTGGTGT+TGG + chr1.3:73584584-73584603 MS.gene029581:CDS 50.0%
! TGCTAAGGGGCTTGGTATGA+AGG + chr1.3:73585407-73585426 MS.gene029581:CDS 50.0%
!! AACTTGCTGTCTTTGGTGGG+TGG - chr1.3:73585799-73585818 None:intergenic 50.0%
!! ATGGTACTGGCACCAAGATG+AGG - chr1.3:73585850-73585869 None:intergenic 50.0%
!! CTGTCGTTGGGGCTTTGAAA+GGG + chr1.3:73586001-73586020 MS.gene029581:CDS 50.0%
!! GGAAAGGTGGGAAGCATCTT+GGG + chr1.3:73587012-73587031 MS.gene029581:CDS 50.0%
!! TCATCTTGGTGCCAGTACCA+TGG + chr1.3:73585849-73585868 MS.gene029581:CDS 50.0%
!! TGGAAAGGTGGGAAGCATCT+TGG + chr1.3:73587011-73587030 MS.gene029581:CDS 50.0%
!! TGTCGTTGGGGCTTTGAAAG+GGG + chr1.3:73586002-73586021 MS.gene029581:CDS 50.0%
AAGAGGAGACGAAGACGACG+AGG - chr1.3:73584355-73584374 None:intergenic 55.0%
AAGATCATCAGGGGCCCTAG+CGG - chr1.3:73586638-73586657 None:intergenic 55.0%
AAGATGGTGAAGGGAGACGG+AGG - chr1.3:73584256-73584275 None:intergenic 55.0%
AGACGAAGACGACGAGGGAA+CGG - chr1.3:73584349-73584368 None:intergenic 55.0%
AGAGGAGACGAAGACGACGA+GGG - chr1.3:73584354-73584373 None:intergenic 55.0%
AGATGGTGAAGGGAGACGGA+GGG - chr1.3:73584255-73584274 None:intergenic 55.0%
AGGTTGCTAGGCGTGCTAAG+GGG + chr1.3:73585394-73585413 MS.gene029581:CDS 55.0%
CAACTGGTAGCAGGAGGAAG+CGG + chr1.3:73586583-73586602 MS.gene029581:CDS 55.0%
GAGGTTGCTAGGCGTGCTAA+GGG + chr1.3:73585393-73585412 MS.gene029581:CDS 55.0%
GATGCTCTCATCGTTCGCAG+TGG + chr1.3:73584512-73584531 MS.gene029581:CDS 55.0%
GCAACCATGTTCAGTAGCGG+CGG - chr1.3:73584630-73584649 None:intergenic 55.0%
GCGGCAACAGTGTTAGCAGT+GGG - chr1.3:73584668-73584687 None:intergenic 55.0%
GGGAAGATGGTGAAGGGAGA+CGG - chr1.3:73584259-73584278 None:intergenic 55.0%
GTCCTCGTCGCTGAAAAGCT+CGG + chr1.3:73584395-73584414 MS.gene029581:CDS 55.0%
TCCACGCAAGCAAGCTGTGA+TGG + chr1.3:73587080-73587099 MS.gene029581:CDS 55.0%
TGAAGGGAGACGGAGGGTTT+GGG - chr1.3:73584249-73584268 None:intergenic 55.0%
TGAGGTTGCTAGGCGTGCTA+AGG + chr1.3:73585392-73585411 MS.gene029581:CDS 55.0%
TGCCAGTACCATGGAAGCTC+AGG + chr1.3:73585858-73585877 MS.gene029581:CDS 55.0%
TTGGCTGTCCAACTGGTAGC+AGG + chr1.3:73586574-73586593 MS.gene029581:CDS 55.0%
TTGGGAAGTAGCGTTAGCGG+CGG - chr1.3:73584231-73584250 None:intergenic 55.0%
! GAGCTTTTCAGCGACGAGGA+CGG - chr1.3:73584396-73584415 None:intergenic 55.0%
! GCACGATCAGCAGGAGCATA+AGG - chr1.3:73585447-73585466 None:intergenic 55.0%
! TCGTGGTGGAGTCATTGACG+AGG + chr1.3:73585623-73585642 MS.gene029581:CDS 55.0%
! TTTTCAGCGACGAGGACGGT+GGG - chr1.3:73584392-73584411 None:intergenic 55.0%
!! GCTGTCGTTGGGGCTTTGAA+AGG + chr1.3:73586000-73586019 MS.gene029581:CDS 55.0%
!! TCGGTGTCAGACACTCACAC+AGG - chr1.3:73585155-73585174 None:intergenic 55.0%
ACTGTTGCCGCCGCTGAACA+CGG + chr1.3:73584677-73584696 MS.gene029581:CDS 60.0%
AGATTCAGGGGAGGTCACGG+TGG + chr1.3:73586873-73586892 MS.gene029581:CDS 60.0%
CGCTTCCTCCTGCTACCAGT+TGG - chr1.3:73586585-73586604 None:intergenic 60.0%
GATCGCGCTCTTAGCTGGCA+TGG + chr1.3:73584700-73584719 MS.gene029581:CDS 60.0%
GCTGAAAAGCTCGGCGAAGC+TGG + chr1.3:73584404-73584423 MS.gene029581:CDS 60.0%
GCTGTCCAACTGGTAGCAGG+AGG + chr1.3:73586577-73586596 MS.gene029581:CDS 60.0%
GGAGGAGAGAGGGAGTTTGG+AGG - chr1.3:73584291-73584310 None:intergenic 60.0%
GGCGGCAACAGTGTTAGCAG+TGG - chr1.3:73584669-73584688 None:intergenic 60.0%
GTGAAGGGAGACGGAGGGTT+TGG - chr1.3:73584250-73584269 None:intergenic 60.0%
GTGGAGGGTCGTGTGAAGGA+TGG + chr1.3:73586892-73586911 MS.gene029581:CDS 60.0%
! CTTTTCAGCGACGAGGACGG+TGG - chr1.3:73584393-73584412 None:intergenic 60.0%
! GACGGTGGGTTTAGCGTCGA+GGG - chr1.3:73584378-73584397 None:intergenic 60.0%
! GCCATCACAGCTTGCTTGCG+TGG - chr1.3:73587084-73587103 None:intergenic 60.0%
! GGGTAGGTTGGCTGTCCAAC+TGG + chr1.3:73586567-73586586 MS.gene029581:CDS 60.0%
! GGGTTTAGCGTCGAGGGAAG+AGG - chr1.3:73584372-73584391 None:intergenic 60.0%
AAGACGACGAGGGAACGGCG+GGG - chr1.3:73584344-73584363 None:intergenic 65.0%
ACGGAGAAGGCGGAGGAGAG+AGG - chr1.3:73584302-73584321 None:intergenic 65.0%
CACGGGATCGCGCTCTTAGC+TGG + chr1.3:73584695-73584714 MS.gene029581:CDS 65.0%
CACGGTGGAGGGTCGTGTGA+AGG + chr1.3:73586888-73586907 MS.gene029581:CDS 65.0%
CGAAGACGACGAGGGAACGG+CGG - chr1.3:73584346-73584365 None:intergenic 65.0%
CGGAGAAGGCGGAGGAGAGA+GGG - chr1.3:73584301-73584320 None:intergenic 65.0%
CTGGCCGCCGCTACTGAACA+TGG + chr1.3:73584623-73584642 MS.gene029581:CDS 65.0%
CTGTTGCCGCCGCTGAACAC+GGG + chr1.3:73584678-73584697 MS.gene029581:CDS 65.0%
GAAGACGACGAGGGAACGGC+GGG - chr1.3:73584345-73584364 None:intergenic 65.0%
GAGCGCGATCCCGTGTTCAG+CGG - chr1.3:73584690-73584709 None:intergenic 65.0%
GCTAGGCGTGCTAAGGGGCT+TGG + chr1.3:73585399-73585418 MS.gene029581:CDS 65.0%
GGAAGTAGCGTTAGCGGCGG+CGG - chr1.3:73584228-73584247 None:intergenic 65.0%
GGCGGAGGAGAGAGGGAGTT+TGG - chr1.3:73584294-73584313 None:intergenic 65.0%
TCAGGGGAGGTCACGGTGGA+GGG + chr1.3:73586877-73586896 MS.gene029581:CDS 65.0%
TTCAGGGGAGGTCACGGTGG+AGG + chr1.3:73586876-73586895 MS.gene029581:CDS 65.0%
! CGCCGAGCTTTTCAGCGACG+AGG - chr1.3:73584400-73584419 None:intergenic 65.0%
! GGACGGTGGGTTTAGCGTCG+AGG - chr1.3:73584379-73584398 None:intergenic 65.0%
AGACGACGAGGGAACGGCGG+GGG - chr1.3:73584343-73584362 None:intergenic 70.0%
AGGGAACGGCGGGGGTTGTG+GGG - chr1.3:73584335-73584354 None:intergenic 70.0%
AGTAGCGTTAGCGGCGGCGG+CGG - chr1.3:73584225-73584244 None:intergenic 70.0%
CGCGATCCCGTGTTCAGCGG+CGG - chr1.3:73584687-73584706 None:intergenic 70.0%
GAGGGAACGGCGGGGGTTGT+GGG - chr1.3:73584336-73584355 None:intergenic 70.0%
GAGGGAGACGGAGAAGGCGG+AGG - chr1.3:73584309-73584328 None:intergenic 70.0%
GCGGAGGGAGACGGAGAAGG+CGG - chr1.3:73584312-73584331 None:intergenic 70.0%
GTTGTGGGGGCGGAGGGAGA+CGG - chr1.3:73584321-73584340 None:intergenic 70.0%
AACGGCGGGGGTTGTGGGGG+CGG - chr1.3:73584331-73584350 None:intergenic 75.0%
CGAGGGAACGGCGGGGGTTG+TGG - chr1.3:73584337-73584356 None:intergenic 75.0%
GGGAACGGCGGGGGTTGTGG+GGG - chr1.3:73584334-73584353 None:intergenic 75.0%
GGGGCGGAGGGAGACGGAGA+AGG - chr1.3:73584315-73584334 None:intergenic 75.0%
! GCGGGGGTTGTGGGGGCGGA+GGG - chr1.3:73584327-73584346 None:intergenic 80.0%
! GGCGGGGGTTGTGGGGGCGG+AGG - chr1.3:73584328-73584347 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 73584218 73587194 73584218 ID=MS.gene029581
chr1.3 mRNA 73584218 73587194 73584218 ID=MS.gene029581.t1;Parent=MS.gene029581
chr1.3 exon 73584218 73584761 73584218 ID=MS.gene029581.t1.exon1;Parent=MS.gene029581.t1
chr1.3 CDS 73584218 73584761 73584218 ID=cds.MS.gene029581.t1;Parent=MS.gene029581.t1
chr1.3 exon 73585310 73585686 73585310 ID=MS.gene029581.t1.exon2;Parent=MS.gene029581.t1
chr1.3 CDS 73585310 73585686 73585310 ID=cds.MS.gene029581.t1;Parent=MS.gene029581.t1
chr1.3 exon 73585769 73585879 73585769 ID=MS.gene029581.t1.exon3;Parent=MS.gene029581.t1
chr1.3 CDS 73585769 73585879 73585769 ID=cds.MS.gene029581.t1;Parent=MS.gene029581.t1
chr1.3 exon 73585973 73586068 73585973 ID=MS.gene029581.t1.exon4;Parent=MS.gene029581.t1
chr1.3 CDS 73585973 73586068 73585973 ID=cds.MS.gene029581.t1;Parent=MS.gene029581.t1
chr1.3 exon 73586523 73587194 73586523 ID=MS.gene029581.t1.exon5;Parent=MS.gene029581.t1
chr1.3 CDS 73586523 73587194 73586523 ID=cds.MS.gene029581.t1;Parent=MS.gene029581.t1
Gene Sequence

>MS.gene029581

ATGGCCGCCGCCGCCGCTAACGCTACTTCCCAAACCCTCCGTCTCCCTTCACCATCTTCCCTTTCTCTCTCCTCCAAACTCCCTCTCTCCTCCGCCTTCTCCGTCTCCCTCCGCCCCCACAACCCCCGCCGTTCCCTCGTCGTCTTCGTCTCCTCTTCCCTCGACGCTAAACCCACCGTCCTCGTCGCTGAAAAGCTCGGCGAAGCTGGTCTCACTCTTCTCAAAGACTTCGCTAACGTCGACTGCTCCTACAATCTCACTCCTGAGGAGCTTTGCACCAAGATCTCTCTCTGTGATGCTCTCATCGTTCGCAGTGGTACCAAAGTCTCACGTGAAGTGTTTGAATCTTCCGGTGGAAGACTCAAGGTTGTTGGTAGAGCTGGTGTTGGTATTGATAACGTGGATCTGGCCGCCGCTACTGAACATGGTTGCTTGGTTGTTAATGCTCCCACTGCTAACACTGTTGCCGCCGCTGAACACGGGATCGCGCTCTTAGCTGGCATGGCTAGAAATGTTGCTCAGGCTGATGCTTCTATCAAAGCTGGTATAGTTCTTTTTTTCATAGCAGCATTTTATCGAACACTTTGTTTGTTAGATTTTTTTTTTTTTAGATCCTGATGATTTTGTTGTGTTTTTTAGTGTTAGTTATTTGGGTACTTTTTGTTTTGTTTCAATTCACATGCTTTTATTCTTTATATTGTTAACTACTAGTGGACTAGGTGACGTAATGGTAAAATTTTCTGTGTAAAGGAGGAAACTTTTTGTCCTCATATATACGTGGTTAACTCTTTTTGTATAAATGTTGAGATCTAATGATATATATGGGGGTAAAGTTTTGATTTTTTTTCTTCTTCCGTATAATCTGTAATGGGTGTTAATGTTGTGGCTTCTGTTATTTGCTTTGCAACATTGTCACTTCTGATCAAAGGCGTGTCCTGTGTGAGTGTCTGACACCGACAACGGCATATGTGACAAAACCGAATTATGTCATTTTCTCAAATTATTATCGTTGTCAAAGCGTTTGTGTCTGTGCTGCATAAGTTATTAGTTGATATGGTTAATTGAATTAGTGTTGATACATGGTTAATACAGGGAAATGGGAGAGAAGTAAGTATGTTGGAGTTTCCCTAGTTGGGAAGACACTTGCTGTAATGGGATTTGGGAAGGTTGGAACTGAGGTTGCTAGGCGTGCTAAGGGGCTTGGTATGAAGGTTATTGCTCATGATCCTTATGCTCCTGCTGATCGTGCTCATGCTATTGGTGTTGAGCTTGTGAGTTTTGAGGAGGCTATTGCCACCGCTGATTTCATCTCTTTGCACATGCCTCTTACGCCTGCTACCAATAAGATGCTCAATGATGAGACTTTTGCCAAGATGAAGAAAGGAGTTAGAATTGTTAATGTTGCTCGTGGTGGAGTCATTGACGAGGATGCACTTGTTAGAGCATTGGATTCTGGAATTGTAGCTCAGGTTTGAAGCACTGAGCCACTTTTAGTTTACTTAAATTAATAATTAATTGGGTTGAAATACTAATAGTTTGTGTCTGTTTCAGGCGGCTCTTGATGTTTTCACGGTGGAACCACCCACCAAAGACAGCAAGTTGGTTATGCATGAGCTAGTTACTGCAACACCTCATCTTGGTGCCAGTACCATGGAAGCTCAGGTAAGTTACCTAAGTAATTGCCTATGACTATGAGTTATAGCTTTGTTCCCCTTTTGCCACCAGTGTCTAATAACCTTTGAAAATAATGACCAGGAAGGTGTAGCTATTGAAATAGCAGAAGCTGTCGTTGGGGCTTTGAAAGGGGAGCTTGCTTCTACTGCAGTCAATGCACCAATGGTTTCCTCAGAGGTACTAGGAACAAAACTATCGTATTTATCCTTTTATTTCATGATGAAAATAACCTTTGCCTCTTGATATTGTTACTGCTTCTCTTCCTTATCTATATCCAAGCAACATGGTTTCCAAAATCATTCTAAATTCTTTGACTTATTGTGTAACCATATTCATATATTGAAAACGATTTTGGAACAAAATGGTTGTCTTAAATTGTTAAATTTCAACTGCTATGTGTCCAACTGGTTCAAATTAAATACTAAAGTGAAGGCAAAAGTTTGATTTGAGAAATCTAATACAAGGATCTTAATGAGTTTTTATTGCTCGGCTTTATCCCTCCAATTTTGAAGCTGGCTTTATCTAGAGCTTGTCATAATACAAAATGATTCATGGATTGGAGTTGGTGATAAATTTGGCGACTGGAATGACTCAAAGTTTAACATATGTTTCATTCCTTTGTGACTTGCAGGTGTTAACAGAACTAAAACCATTTGTTGATCTTGCTGAGAAACTGGGTAGGTTGGCTGTCCAACTGGTAGCAGGAGGAAGCGGTGTAAAGACAGTGAAAGTGACTTACGCTTCCGCTAGGGCCCCTGATGATCTTGACACTCGTCTTCTTCGTGCTATGATAACAAAGGGTCTGATTGAGCCCATATCCAGTGTTTTCGTGAACTTAGTTAATGCTGACTTCACTGCTAAACAAAGAGGGCTAAGAATTACTGAGGAGAGAGTTATTCTTGATGGTTCACCTGAGAATCCACTTGAATTCATCCAAGTCCAGATTGCTAACGTGGAATCTCGATTTGCTAGTGCCATATCAGATTCAGGGGAGGTCACGGTGGAGGGTCGTGTGAAGGATGGTGTCCCCCATCTTACAAAGGTTGGATCTTTTGAAGTTGATGTGAGTTTGGAAGGTAGCATTATACTTTGCAGGCAAGTAGATCAACCAGGTATGATTGGAAAGGTGGGAAGCATCTTGGGTGAAGAGAATGTGAATGTCAGCTTCATGAGTGTTGGAAGGATTGCTCCACGCAAGCAAGCTGTGATGGCAATCGGAGTTGATGAGCAACCACGCAAAGAATCTTTGCAAAGGATTGGAGACATTCCTGCTGTTGAAGAATTTGTTTTCCTTAAGTTGTAA
Protein sequence

>MS.gene029581.t1

MAAAAANATSQTLRLPSPSSLSLSSKLPLSSAFSVSLRPHNPRRSLVVFVSSSLDAKPTVLVAEKLGEAGLTLLKDFANVDCSYNLTPEELCTKISLCDALIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAGMARNVAQADASIKAGKWERSKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMKVIAHDPYAPADRAHAIGVELVSFEEAIATADFISLHMPLTPATNKMLNDETFAKMKKGVRIVNVARGGVIDEDALVRALDSGIVAQAALDVFTVEPPTKDSKLVMHELVTATPHLGASTMEAQEGVAIEIAEAVVGALKGELASTAVNAPMVSSEVLTELKPFVDLAEKLGRLAVQLVAGGSGVKTVKVTYASARAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGLRITEERVILDGSPENPLEFIQVQIANVESRFASAISDSGEVTVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSILGEENVNVSFMSVGRIAPRKQAVMAIGVDEQPRKESLQRIGDIPAVEEFVFLKL