Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029672.t1 | XP_003630676.1 | 97.8 | 316 | 7 | 0 | 1 | 316 | 1 | 316 | 1.20E-184 | 655.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029672.t1 | O82200 | 77.6 | 317 | 70 | 1 | 1 | 316 | 1 | 317 | 1.0e-149 | 530.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029672.t1 | G7LJN9 | 97.8 | 316 | 7 | 0 | 1 | 316 | 1 | 316 | 8.4e-185 | 655.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011102 | MS.gene029672 | PPI |
| MS.gene072181 | MS.gene029672 | PPI |
| MS.gene029672 | MS.gene36707 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029672.t1 | MTR_8g102150 | 97.785 | 316 | 7 | 0 | 1 | 316 | 1 | 316 | 0.0 | 645 |
| MS.gene029672.t1 | MTR_8g015220 | 74.448 | 317 | 68 | 3 | 1 | 316 | 1 | 305 | 2.16e-175 | 488 |
| MS.gene029672.t1 | MTR_8g015220 | 72.598 | 281 | 64 | 3 | 1 | 280 | 1 | 269 | 2.95e-150 | 422 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029672.t1 | AT2G19800 | 77.603 | 317 | 70 | 1 | 1 | 316 | 1 | 317 | 0.0 | 521 |
| MS.gene029672.t1 | AT4G26260 | 78.302 | 318 | 67 | 1 | 1 | 316 | 1 | 318 | 0.0 | 515 |
| MS.gene029672.t1 | AT4G26260 | 78.438 | 320 | 62 | 3 | 1 | 316 | 1 | 317 | 0.0 | 511 |
| MS.gene029672.t1 | AT5G56640 | 77.181 | 298 | 66 | 2 | 21 | 316 | 17 | 314 | 4.95e-173 | 482 |
| MS.gene029672.t1 | AT5G56640 | 81.091 | 275 | 51 | 1 | 43 | 316 | 10 | 284 | 6.32e-170 | 473 |
| MS.gene029672.t1 | AT1G14520 | 71.118 | 322 | 76 | 3 | 1 | 316 | 1 | 311 | 9.79e-169 | 471 |
| MS.gene029672.t1 | AT1G14520 | 71.118 | 322 | 76 | 3 | 1 | 316 | 1 | 311 | 9.79e-169 | 471 |
| MS.gene029672.t1 | AT1G14520 | 71.875 | 320 | 75 | 4 | 1 | 316 | 1 | 309 | 1.90e-168 | 470 |
| MS.gene029672.t1 | AT1G14520 | 71.019 | 314 | 74 | 3 | 1 | 308 | 1 | 303 | 8.67e-162 | 454 |
Find 62 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTCTGCTTCCTAAATT+TGG | 0.129202 | 5.4:-37714710 | MS.gene029672:CDS |
| TGAGGTAATTCACCAAATTT+AGG | 0.223539 | 5.4:+37714698 | None:intergenic |
| TGGCCAAATGAATTGATTTC+AGG | 0.232542 | 5.4:+37715453 | None:intergenic |
| ACGAAAATGCTTACGGTAAA+AGG | 0.245636 | 5.4:+37714007 | None:intergenic |
| ACAAAGCAGAAATGAGTATA+TGG | 0.246822 | 5.4:-37715087 | MS.gene029672:CDS |
| TAAGCAGGGGATTTGATATC+AGG | 0.289677 | 5.4:+37714382 | None:intergenic |
| CATTTGACTGCTCTCATTCA+TGG | 0.300205 | 5.4:-37714938 | MS.gene029672:intron |
| TCAATAAGTGATAGATAATA+TGG | 0.308416 | 5.4:+37713674 | None:intergenic |
| GAAGAAAGTGAAAGGCAAAA+AGG | 0.312701 | 5.4:-37715301 | MS.gene029672:CDS |
| ATTCATTTGGCCATGCCTTC+AGG | 0.318144 | 5.4:-37715443 | MS.gene029672:intron |
| GTGCAGGTTGCTAAGGAAAA+TGG | 0.342888 | 5.4:-37714074 | MS.gene029672:intron |
| AGCTTACAAAATCATATGTT+TGG | 0.344683 | 5.4:+37715245 | None:intergenic |
| TATCACCATCTAAGCTTTGC+TGG | 0.359991 | 5.4:+37713548 | None:intergenic |
| ATTTCCCAGCAAAGCTTAGA+TGG | 0.363074 | 5.4:-37713553 | MS.gene029672:CDS |
| GCCCCTGAAATCAATTCATT+TGG | 0.364619 | 5.4:-37715456 | MS.gene029672:CDS |
| GTTCTTGCTGCAGTATTTCA+AGG | 0.366185 | 5.4:-37714410 | MS.gene029672:intron |
| ATTTGTGGTTCATCCAAATC+AGG | 0.380292 | 5.4:+37715022 | None:intergenic |
| ATTGTCTTGCTTCAGATCTT+GGG | 0.404763 | 5.4:-37714736 | MS.gene029672:intron |
| AAGATTATCCTAATGAAGAT+TGG | 0.408744 | 5.4:-37714964 | MS.gene029672:CDS |
| GGATGAAAGTGATCCTGATT+TGG | 0.408862 | 5.4:-37715035 | MS.gene029672:CDS |
| ATTTGGTGAATTACCTCAAT+GGG | 0.414194 | 5.4:-37714693 | MS.gene029672:CDS |
| ATCAATGAACTTGTTCTTGA+TGG | 0.416085 | 5.4:-37715522 | MS.gene029672:CDS |
| AAATGTAACCAATCTTCATT+AGG | 0.423631 | 5.4:+37714956 | None:intergenic |
| ATAATGAACAATCCAGCATT+TGG | 0.426067 | 5.4:+37714041 | None:intergenic |
| TTACCTTGCAGCTTTGCATA+AGG | 0.435788 | 5.4:-37713920 | MS.gene029672:intron |
| GGCTCCACTTTACCAAATGC+TGG | 0.448266 | 5.4:-37714053 | MS.gene029672:CDS |
| TGCAGCAAATGTTGAATTTG+TGG | 0.449869 | 5.4:+37715007 | None:intergenic |
| AAGGGGTTGAGGAATTCTAT+AGG | 0.455597 | 5.4:-37715282 | MS.gene029672:CDS |
| TTCATCAAAGGCACAACCTA+AGG | 0.469206 | 5.4:+37714535 | None:intergenic |
| GCAGGAGACACATTTCCCTT+AGG | 0.472594 | 5.4:-37714551 | MS.gene029672:intron |
| AATTTGGTGAATTACCTCAA+TGG | 0.484943 | 5.4:-37714694 | MS.gene029672:CDS |
| CAATCCAGCATTTGGTAAAG+TGG | 0.484959 | 5.4:+37714049 | None:intergenic |
| CTTGTTGAGCATGTGGACTT+TGG | 0.499354 | 5.4:-37715670 | MS.gene029672:intron |
| TGAATTGCTGAATGAGGTTG+TGG | 0.499420 | 5.4:-37715056 | MS.gene029672:CDS |
| GGCCAAATGAATTGATTTCA+GGG | 0.508703 | 5.4:+37715454 | None:intergenic |
| TAATGTAGGTGAAGAAAATG+AGG | 0.510914 | 5.4:-37715129 | MS.gene029672:intron |
| ACATGATGATTATATGTGTA+TGG | 0.511397 | 5.4:-37714296 | MS.gene029672:intron |
| TTACCTCAATGGGCTGTTGT+TGG | 0.522851 | 5.4:-37714683 | MS.gene029672:intron |
| CAAAGCAGAAATGAGTATAT+GGG | 0.524713 | 5.4:-37715086 | MS.gene029672:CDS |
| AATGAACTTGTTCTTGATGG+TGG | 0.532274 | 5.4:-37715519 | MS.gene029672:CDS |
| CTTGCAGCTTTGCATAAGGA+AGG | 0.535318 | 5.4:-37713916 | MS.gene029672:intron |
| ATCCAATGTGCAGGTTGCTA+AGG | 0.541945 | 5.4:-37714081 | MS.gene029672:intron |
| ATCACCATCTAAGCTTTGCT+GGG | 0.549776 | 5.4:+37713549 | None:intergenic |
| TTATCTATCACTTATTGAGA+AGG | 0.553529 | 5.4:-37713669 | MS.gene029672:intron |
| AAGCAGGGGATTTGATATCA+GGG | 0.566312 | 5.4:+37714383 | None:intergenic |
| GGGATCTACAATGAAGGGTG+TGG | 0.566729 | 5.4:-37714346 | MS.gene029672:CDS |
| GTGAACATTTGATTCATCAA+AGG | 0.571274 | 5.4:+37714523 | None:intergenic |
| TAGACAATGTGATGATGTCA+TGG | 0.573976 | 5.4:-37714321 | MS.gene029672:CDS |
| AAAATGGGATCTACAATGAA+GGG | 0.582573 | 5.4:-37714351 | MS.gene029672:CDS |
| ATTATGATGAAGAAAGTGAA+AGG | 0.589249 | 5.4:-37715309 | MS.gene029672:CDS |
| TCATCAAAGGCACAACCTAA+GGG | 0.592008 | 5.4:+37714536 | None:intergenic |
| TTGGAAATAACCTGAAGGCA+TGG | 0.600865 | 5.4:+37715433 | None:intergenic |
| ATGTTGTGAATTGCTGAATG+AGG | 0.601153 | 5.4:-37715062 | MS.gene029672:CDS |
| GACAATACTTGTTGAGCATG+TGG | 0.621769 | 5.4:-37715677 | MS.gene029672:CDS |
| TGATCTCTACAGCAAAAGCA+AGG | 0.624334 | 5.4:-37713723 | MS.gene029672:CDS |
| GCCAAATGAATTGATTTCAG+GGG | 0.627992 | 5.4:+37715455 | None:intergenic |
| AATGTAGGTGAAGAAAATGA+GGG | 0.632828 | 5.4:-37715128 | MS.gene029672:intron |
| TAACCAACAACAGCCCATTG+AGG | 0.638571 | 5.4:+37714680 | None:intergenic |
| AGACAATGTGATGATGTCAT+GGG | 0.660175 | 5.4:-37714320 | MS.gene029672:CDS |
| TGAATCAAATGTTCACCACA+AGG | 0.666189 | 5.4:-37714516 | MS.gene029672:intron |
| GTAGGTGAAGAAAATGAGGG+AGG | 0.669919 | 5.4:-37715125 | MS.gene029672:intron |
| GACAATGTGATGATGTCATG+GGG | 0.752398 | 5.4:-37714319 | MS.gene029672:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGTTAATTAATTAATGT+AGG | - | chr5.4:37714086-37714105 | MS.gene029672:intron | 10.0% |
| !! | AAAAAACAATGAAATAGAAT+TGG | + | chr5.4:37713818-37713837 | None:intergenic | 15.0% |
| !! | TTAGTAATTATTATGTAATG+AGG | + | chr5.4:37715461-37715480 | None:intergenic | 15.0% |
| !!! | TTAATTAACATTTTGCAAAT+TGG | + | chr5.4:37714079-37714098 | None:intergenic | 15.0% |
| !! | AAAGATCATTTACAATTTCA+AGG | - | chr5.4:37714374-37714393 | MS.gene029672:CDS | 20.0% |
| !! | AGATATTTATAATTACCTTG+TGG | + | chr5.4:37714731-37714750 | None:intergenic | 20.0% |
| !! | ATCATATGAAAATAAGTGTA+AGG | + | chr5.4:37714584-37714603 | None:intergenic | 20.0% |
| !! | GAATAATCAGAAAATTGATT+CGG | + | chr5.4:37715094-37715113 | None:intergenic | 20.0% |
| !! | TCAATAAGTGATAGATAATA+TGG | + | chr5.4:37715558-37715577 | None:intergenic | 20.0% |
| !!! | AATTCAACATTTTAACTGAA+TGG | - | chr5.4:37714641-37714660 | MS.gene029672:intron | 20.0% |
| !!! | CACATTTTTATCATCAAATT+GGG | + | chr5.4:37713675-37713694 | None:intergenic | 20.0% |
| !!! | TTGTGTTACTTATTTTGTTT+TGG | - | chr5.4:37715638-37715657 | MS.gene029672:intron | 20.0% |
| ! | AAATGTAACCAATCTTCATT+AGG | + | chr5.4:37714276-37714295 | None:intergenic | 25.0% |
| ! | AAGATTATCCTAATGAAGAT+TGG | - | chr5.4:37714265-37714284 | MS.gene029672:intron | 25.0% |
| ! | ACAAGATGATTGGAATTATT+TGG | - | chr5.4:37713892-37713911 | MS.gene029672:CDS | 25.0% |
| ! | ACATGATGATTATATGTGTA+TGG | - | chr5.4:37714933-37714952 | MS.gene029672:intron | 25.0% |
| ! | ACCTTTCTAAATGGATATTA+TGG | - | chr5.4:37714438-37714457 | MS.gene029672:intron | 25.0% |
| ! | AGAAATTAACACAAGATGAT+TGG | - | chr5.4:37713882-37713901 | MS.gene029672:CDS | 25.0% |
| ! | AGCTTACAAAATCATATGTT+TGG | + | chr5.4:37713987-37714006 | None:intergenic | 25.0% |
| ! | AGTAACACAAAAAAACAATG+AGG | + | chr5.4:37715628-37715647 | None:intergenic | 25.0% |
| ! | ATCGTGTGATGAATTATTTA+CGG | + | chr5.4:37714964-37714983 | None:intergenic | 25.0% |
| ! | ATTATGATGAAGAAAGTGAA+AGG | - | chr5.4:37713920-37713939 | MS.gene029672:intron | 25.0% |
| ! | CATAATAACGAAAATGCTTA+CGG | + | chr5.4:37715232-37715251 | None:intergenic | 25.0% |
| ! | CCTTTCTAAATGGATATTAT+GGG | - | chr5.4:37714439-37714458 | MS.gene029672:intron | 25.0% |
| ! | CTGCTTATAACACTAAAAAT+GGG | - | chr5.4:37714863-37714882 | MS.gene029672:intron | 25.0% |
| ! | CTTTCTAAATGGATATTATG+GGG | - | chr5.4:37714440-37714459 | MS.gene029672:intron | 25.0% |
| ! | GAACAAAAAAAAAACATGAC+CGG | + | chr5.4:37715605-37715624 | None:intergenic | 25.0% |
| ! | GTAACACAAAAAAACAATGA+GGG | + | chr5.4:37715627-37715646 | None:intergenic | 25.0% |
| ! | TGAAATAGACACAAATTTGA+TGG | + | chr5.4:37714026-37714045 | None:intergenic | 25.0% |
| ! | TGATGATAAAAATGTGCATT+CGG | - | chr5.4:37713679-37713698 | MS.gene029672:CDS | 25.0% |
| ! | TTATCTATCACTTATTGAGA+AGG | - | chr5.4:37715560-37715579 | MS.gene029672:CDS | 25.0% |
| !! | AAATTTTCTGTACAGAGAAT+GGG | + | chr5.4:37715266-37715285 | None:intergenic | 25.0% |
| !! | CATTTTGCAAATTGGAATTT+TGG | + | chr5.4:37714071-37714090 | None:intergenic | 25.0% |
| !! | GCACATTTTTATCATCAAAT+TGG | + | chr5.4:37713676-37713695 | None:intergenic | 25.0% |
| !! | TAAATTTTCTGTACAGAGAA+TGG | + | chr5.4:37715267-37715286 | None:intergenic | 25.0% |
| !! | TTTTACTGAATCGTTTGAAT+TGG | - | chr5.4:37715005-37715024 | MS.gene029672:CDS | 25.0% |
| !!! | AAGATTTTGAGAATTTGAAG+TGG | - | chr5.4:37715362-37715381 | MS.gene029672:intron | 25.0% |
| !!! | ATTTTTAGTGTTATAAGCAG+GGG | + | chr5.4:37714863-37714882 | None:intergenic | 25.0% |
| !!! | CATTTTTAGTGTTATAAGCA+GGG | + | chr5.4:37714864-37714883 | None:intergenic | 25.0% |
| !!! | TGTAAATGATCTTTTTTGTC+AGG | + | chr5.4:37714368-37714387 | None:intergenic | 25.0% |
| AAAAATGGGATCTACAATGA+AGG | - | chr5.4:37714877-37714896 | MS.gene029672:intron | 30.0% | |
| AAAATGGGATCTACAATGAA+GGG | - | chr5.4:37714878-37714897 | MS.gene029672:intron | 30.0% | |
| AAGAAAGTGAAAGGCAAAAA+GGG | - | chr5.4:37713929-37713948 | MS.gene029672:intron | 30.0% | |
| AATGTAGGTGAAGAAAATGA+GGG | - | chr5.4:37714101-37714120 | MS.gene029672:intron | 30.0% | |
| ACAAAGCAGAAATGAGTATA+TGG | - | chr5.4:37714142-37714161 | MS.gene029672:intron | 30.0% | |
| ATAACAAGCCACATTATTAC+AGG | - | chr5.4:37713647-37713666 | MS.gene029672:intron | 30.0% | |
| ATAATGAACAATCCAGCATT+TGG | + | chr5.4:37715191-37715210 | None:intergenic | 30.0% | |
| ATGGTTAATGACATATTTGC+AGG | - | chr5.4:37714660-37714679 | MS.gene029672:intron | 30.0% | |
| ATTCTTCTGCTTCCTAAATT+TGG | - | chr5.4:37714519-37714538 | MS.gene029672:CDS | 30.0% | |
| CAAAGCAGAAATGAGTATAT+GGG | - | chr5.4:37714143-37714162 | MS.gene029672:intron | 30.0% | |
| CCCATAATATCCATTTAGAA+AGG | + | chr5.4:37714442-37714461 | None:intergenic | 30.0% | |
| CCTGCTTATAACACTAAAAA+TGG | - | chr5.4:37714862-37714881 | MS.gene029672:intron | 30.0% | |
| GTGAACATTTGATTCATCAA+AGG | + | chr5.4:37714709-37714728 | None:intergenic | 30.0% | |
| TAACAAGCCACATTATTACA+GGG | - | chr5.4:37713648-37713667 | MS.gene029672:intron | 30.0% | |
| TAACACCAATCTTTATGAAC+CGG | - | chr5.4:37715583-37715602 | MS.gene029672:intron | 30.0% | |
| TAATGTAGGTGAAGAAAATG+AGG | - | chr5.4:37714100-37714119 | MS.gene029672:intron | 30.0% | |
| TAGAATTGGAAATAACCTGA+AGG | + | chr5.4:37713804-37713823 | None:intergenic | 30.0% | |
| TGAGGTAATTCACCAAATTT+AGG | + | chr5.4:37714534-37714553 | None:intergenic | 30.0% | |
| TTTGTGTCTATTTCACATGA+AGG | - | chr5.4:37714031-37714050 | MS.gene029672:CDS | 30.0% | |
| ! | AATTTGGTGAATTACCTCAA+TGG | - | chr5.4:37714535-37714554 | MS.gene029672:CDS | 30.0% |
| ! | AATTTTCTGTACAGAGAATG+GGG | + | chr5.4:37715265-37715284 | None:intergenic | 30.0% |
| ! | ATCAATGAACTTGTTCTTGA+TGG | - | chr5.4:37713707-37713726 | MS.gene029672:CDS | 30.0% |
| ! | ATGTCAGACTTGTTCAAATT+AGG | + | chr5.4:37714418-37714437 | None:intergenic | 30.0% |
| ! | ATTTGGTGAATTACCTCAAT+GGG | - | chr5.4:37714536-37714555 | MS.gene029672:CDS | 30.0% |
| ! | GACTTGTTCAAATTAGGATA+TGG | + | chr5.4:37714412-37714431 | None:intergenic | 30.0% |
| !! | AAAATTGATTCGGATTTCCT+CGG | + | chr5.4:37715084-37715103 | None:intergenic | 30.0% |
| !! | AATGTGGCTTGTTATATGAT+GGG | + | chr5.4:37713642-37713661 | None:intergenic | 30.0% |
| !! | TAATGTGGCTTGTTATATGA+TGG | + | chr5.4:37713643-37713662 | None:intergenic | 30.0% |
| !!! | CCATTTTTAGTGTTATAAGC+AGG | + | chr5.4:37714865-37714884 | None:intergenic | 30.0% |
| ACGAAAATGCTTACGGTAAA+AGG | + | chr5.4:37715225-37715244 | None:intergenic | 35.0% | |
| AGAAAGTGAAAGGCAAAAAG+GGG | - | chr5.4:37713930-37713949 | MS.gene029672:intron | 35.0% | |
| ATGTTGTGAATTGCTGAATG+AGG | - | chr5.4:37714167-37714186 | MS.gene029672:intron | 35.0% | |
| ATTGTCTTGCTTCAGATCTT+GGG | - | chr5.4:37714493-37714512 | MS.gene029672:intron | 35.0% | |
| ATTTGTGGTTCATCCAAATC+AGG | + | chr5.4:37714210-37714229 | None:intergenic | 35.0% | |
| GAAGAAAGTGAAAGGCAAAA+AGG | - | chr5.4:37713928-37713947 | MS.gene029672:intron | 35.0% | |
| GATGATTGGAATTATTTGGC+AGG | - | chr5.4:37713896-37713915 | MS.gene029672:CDS | 35.0% | |
| GTCTGACATACCTTTCTAAA+TGG | - | chr5.4:37714429-37714448 | MS.gene029672:intron | 35.0% | |
| TATTGTCTTGCTTCAGATCT+TGG | - | chr5.4:37714492-37714511 | MS.gene029672:intron | 35.0% | |
| TGAATCAAATGTTCACCACA+AGG | - | chr5.4:37714713-37714732 | MS.gene029672:CDS | 35.0% | |
| TGCAGCAAATGTTGAATTTG+TGG | + | chr5.4:37714225-37714244 | None:intergenic | 35.0% | |
| ! | AATGAACTTGTTCTTGATGG+TGG | - | chr5.4:37713710-37713729 | MS.gene029672:CDS | 35.0% |
| ! | AGACAATGTGATGATGTCAT+GGG | - | chr5.4:37714909-37714928 | MS.gene029672:intron | 35.0% |
| ! | GCCAAATGAATTGATTTCAG+GGG | + | chr5.4:37713777-37713796 | None:intergenic | 35.0% |
| ! | GGCCAAATGAATTGATTTCA+GGG | + | chr5.4:37713778-37713797 | None:intergenic | 35.0% |
| ! | TAGACAATGTGATGATGTCA+TGG | - | chr5.4:37714908-37714927 | MS.gene029672:intron | 35.0% |
| ! | TGGCCAAATGAATTGATTTC+AGG | + | chr5.4:37713779-37713798 | None:intergenic | 35.0% |
| !!! | GCATTCTGAGAAGCATTTTT+TGG | + | chr5.4:37713746-37713765 | None:intergenic | 35.0% |
| !!! | TGAGAAGCATTTTTTGGTAG+AGG | + | chr5.4:37713740-37713759 | None:intergenic | 35.0% |
| AAGCAGGGGATTTGATATCA+GGG | + | chr5.4:37714849-37714868 | None:intergenic | 40.0% | |
| AAGGGGTTGAGGAATTCTAT+AGG | - | chr5.4:37713947-37713966 | MS.gene029672:intron | 40.0% | |
| ATTGGGACCCTGTAATAATG+TGG | + | chr5.4:37713658-37713677 | None:intergenic | 40.0% | |
| ATTTCCCAGCAAAGCTTAGA+TGG | - | chr5.4:37715676-37715695 | MS.gene029672:CDS | 40.0% | |
| CAATCCAGCATTTGGTAAAG+TGG | + | chr5.4:37715183-37715202 | None:intergenic | 40.0% | |
| CATTTGACTGCTCTCATTCA+TGG | - | chr5.4:37714291-37714310 | MS.gene029672:intron | 40.0% | |
| CTGCAGCAAGAACAAGATTT+AGG | + | chr5.4:37714812-37714831 | None:intergenic | 40.0% | |
| GCCCCTGAAATCAATTCATT+TGG | - | chr5.4:37713773-37713792 | MS.gene029672:intron | 40.0% | |
| GGATGAAAGTGATCCTGATT+TGG | - | chr5.4:37714194-37714213 | MS.gene029672:intron | 40.0% | |
| GTTCTTGCTGCAGTATTTCA+AGG | - | chr5.4:37714819-37714838 | MS.gene029672:intron | 40.0% | |
| TAAGCAGGGGATTTGATATC+AGG | + | chr5.4:37714850-37714869 | None:intergenic | 40.0% | |
| TGAATTGCTGAATGAGGTTG+TGG | - | chr5.4:37714173-37714192 | MS.gene029672:intron | 40.0% | |
| TGATCTCTACAGCAAAAGCA+AGG | - | chr5.4:37715506-37715525 | MS.gene029672:CDS | 40.0% | |
| TTACCTTGCAGCTTTGCATA+AGG | - | chr5.4:37715309-37715328 | MS.gene029672:CDS | 40.0% | |
| TTATGCAAAGCTGCAAGGTA+AGG | + | chr5.4:37715310-37715329 | None:intergenic | 40.0% | |
| TTGGAAATAACCTGAAGGCA+TGG | + | chr5.4:37713799-37713818 | None:intergenic | 40.0% | |
| ! | CATGACCGGTTCATAAAGAT+TGG | + | chr5.4:37715591-37715610 | None:intergenic | 40.0% |
| ! | GACAATACTTGTTGAGCATG+TGG | - | chr5.4:37713552-37713571 | MS.gene029672:CDS | 40.0% |
| ! | GACAATGTGATGATGTCATG+GGG | - | chr5.4:37714910-37714929 | MS.gene029672:intron | 40.0% |
| ! | TCATCAAAGGCACAACCTAA+GGG | + | chr5.4:37714696-37714715 | None:intergenic | 40.0% |
| ! | TTCATCAAAGGCACAACCTA+AGG | + | chr5.4:37714697-37714716 | None:intergenic | 40.0% |
| ATCCAATGTGCAGGTTGCTA+AGG | - | chr5.4:37715148-37715167 | MS.gene029672:intron | 45.0% | |
| ATTCATTTGGCCATGCCTTC+AGG | - | chr5.4:37713786-37713805 | MS.gene029672:intron | 45.0% | |
| CTTCCTTATGCAAAGCTGCA+AGG | + | chr5.4:37715315-37715334 | None:intergenic | 45.0% | |
| CTTGCAGCTTTGCATAAGGA+AGG | - | chr5.4:37715313-37715332 | MS.gene029672:CDS | 45.0% | |
| CTTGTTGAGCATGTGGACTT+TGG | - | chr5.4:37713559-37713578 | MS.gene029672:intron | 45.0% | |
| GTAGGTGAAGAAAATGAGGG+AGG | - | chr5.4:37714104-37714123 | MS.gene029672:intron | 45.0% | |
| GTGCAGGTTGCTAAGGAAAA+TGG | - | chr5.4:37715155-37715174 | MS.gene029672:intron | 45.0% | |
| TAACCAACAACAGCCCATTG+AGG | + | chr5.4:37714552-37714571 | None:intergenic | 45.0% | |
| TGAAAGGCAAAAAGGGGTTG+AGG | - | chr5.4:37713936-37713955 | MS.gene029672:intron | 45.0% | |
| TTCCTTAGCAACCTGCACAT+TGG | + | chr5.4:37715153-37715172 | None:intergenic | 45.0% | |
| !! | TTACCTCAATGGGCTGTTGT+TGG | - | chr5.4:37714546-37714565 | MS.gene029672:CDS | 45.0% |
| !! | AAAATATATAAATATTGAAA+AGG | + | chr5.4:37714327-37714346 | None:intergenic | 5.0% |
| !! | TTTCAAAAAAAATAAAATTA+TGG | + | chr5.4:37713855-37713874 | None:intergenic | 5.0% |
| ACACTGTGCATCCAATGTGC+AGG | - | chr5.4:37715139-37715158 | MS.gene029672:intron | 50.0% | |
| GCAGGAGACACATTTCCCTT+AGG | - | chr5.4:37714678-37714697 | MS.gene029672:intron | 50.0% | |
| GGCTCCACTTTACCAAATGC+TGG | - | chr5.4:37715176-37715195 | MS.gene029672:intron | 50.0% | |
| GGGATCTACAATGAAGGGTG+TGG | - | chr5.4:37714883-37714902 | MS.gene029672:intron | 50.0% | |
| ! | GTGCGATGTGCTAGCTTCCG+AGG | - | chr5.4:37715064-37715083 | MS.gene029672:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 37713550 | 37715701 | 37713550 | ID=MS.gene029672 |
| chr5.4 | mRNA | 37713550 | 37715701 | 37713550 | ID=MS.gene029672.t1;Parent=MS.gene029672 |
| chr5.4 | exon | 37715671 | 37715701 | 37715671 | ID=MS.gene029672.t1.exon1;Parent=MS.gene029672.t1 |
| chr5.4 | CDS | 37715671 | 37715701 | 37715671 | ID=cds.MS.gene029672.t1;Parent=MS.gene029672.t1 |
| chr5.4 | exon | 37715444 | 37715582 | 37715444 | ID=MS.gene029672.t1.exon2;Parent=MS.gene029672.t1 |
| chr5.4 | CDS | 37715444 | 37715582 | 37715444 | ID=cds.MS.gene029672.t1;Parent=MS.gene029672.t1 |
| chr5.4 | exon | 37715252 | 37715333 | 37715252 | ID=MS.gene029672.t1.exon3;Parent=MS.gene029672.t1 |
| chr5.4 | CDS | 37715252 | 37715333 | 37715252 | ID=cds.MS.gene029672.t1;Parent=MS.gene029672.t1 |
| chr5.4 | exon | 37714939 | 37715143 | 37714939 | ID=MS.gene029672.t1.exon4;Parent=MS.gene029672.t1 |
| chr5.4 | CDS | 37714939 | 37715143 | 37714939 | ID=cds.MS.gene029672.t1;Parent=MS.gene029672.t1 |
| chr5.4 | exon | 37714684 | 37714743 | 37714684 | ID=MS.gene029672.t1.exon5;Parent=MS.gene029672.t1 |
| chr5.4 | CDS | 37714684 | 37714743 | 37714684 | ID=cds.MS.gene029672.t1;Parent=MS.gene029672.t1 |
| chr5.4 | exon | 37714517 | 37714569 | 37714517 | ID=MS.gene029672.t1.exon6;Parent=MS.gene029672.t1 |
| chr5.4 | CDS | 37714517 | 37714569 | 37714517 | ID=cds.MS.gene029672.t1;Parent=MS.gene029672.t1 |
| chr5.4 | exon | 37714297 | 37714419 | 37714297 | ID=MS.gene029672.t1.exon7;Parent=MS.gene029672.t1 |
| chr5.4 | CDS | 37714297 | 37714419 | 37714297 | ID=cds.MS.gene029672.t1;Parent=MS.gene029672.t1 |
| chr5.4 | exon | 37714021 | 37714090 | 37714021 | ID=MS.gene029672.t1.exon8;Parent=MS.gene029672.t1 |
| chr5.4 | CDS | 37714021 | 37714090 | 37714021 | ID=cds.MS.gene029672.t1;Parent=MS.gene029672.t1 |
| chr5.4 | exon | 37713853 | 37713931 | 37713853 | ID=MS.gene029672.t1.exon9;Parent=MS.gene029672.t1 |
| chr5.4 | CDS | 37713853 | 37713931 | 37713853 | ID=cds.MS.gene029672.t1;Parent=MS.gene029672.t1 |
| chr5.4 | exon | 37713670 | 37713751 | 37713670 | ID=MS.gene029672.t1.exon10;Parent=MS.gene029672.t1 |
| chr5.4 | CDS | 37713670 | 37713751 | 37713670 | ID=cds.MS.gene029672.t1;Parent=MS.gene029672.t1 |
| chr5.4 | exon | 37713550 | 37713576 | 37713550 | ID=MS.gene029672.t1.exon11;Parent=MS.gene029672.t1 |
| chr5.4 | CDS | 37713550 | 37713576 | 37713550 | ID=cds.MS.gene029672.t1;Parent=MS.gene029672.t1 |
| Gene Sequence |
| Protein sequence |
