Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072181.t1 | XP_013444225.1 | 98 | 305 | 6 | 0 | 1 | 305 | 1 | 305 | 3.90E-177 | 630.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072181.t1 | Q8L799 | 75.9 | 311 | 69 | 2 | 1 | 305 | 1 | 311 | 1.0e-138 | 494.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072181.t1 | A0A072TLF4 | 98.0 | 305 | 6 | 0 | 1 | 305 | 1 | 305 | 2.8e-177 | 630.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049171 | MS.gene072181 | -0.81959 | 1.07E-52 | -1.69E-46 |
MS.gene049285 | MS.gene072181 | -0.818666 | 1.74E-52 | -1.69E-46 |
MS.gene049865 | MS.gene072181 | -0.821329 | 4.28E-53 | -1.69E-46 |
MS.gene050170 | MS.gene072181 | -0.817788 | 2.75E-52 | -1.69E-46 |
MS.gene050463 | MS.gene072181 | 0.815475 | 9.07E-52 | -1.69E-46 |
MS.gene050496 | MS.gene072181 | -0.805608 | 1.23E-49 | -1.69E-46 |
MS.gene050504 | MS.gene072181 | -0.825641 | 4.20E-54 | -1.69E-46 |
MS.gene050518 | MS.gene072181 | -0.807071 | 6.05E-50 | -1.69E-46 |
MS.gene050528 | MS.gene072181 | 0.809309 | 2.02E-50 | -1.69E-46 |
MS.gene050577 | MS.gene072181 | -0.804565 | 2.03E-49 | -1.69E-46 |
MS.gene050612 | MS.gene072181 | -0.80258 | 5.24E-49 | -1.69E-46 |
MS.gene050699 | MS.gene072181 | -0.810709 | 1.01E-50 | -1.69E-46 |
MS.gene050986 | MS.gene072181 | -0.806782 | 6.96E-50 | -1.69E-46 |
MS.gene051946 | MS.gene072181 | 0.810381 | 1.19E-50 | -1.69E-46 |
MS.gene051998 | MS.gene072181 | 0.805455 | 1.32E-49 | -1.69E-46 |
MS.gene052482 | MS.gene072181 | -0.812628 | 3.85E-51 | -1.69E-46 |
MS.gene052486 | MS.gene072181 | -0.820296 | 7.40E-53 | -1.69E-46 |
MS.gene052937 | MS.gene072181 | 0.815748 | 7.88E-52 | -1.69E-46 |
MS.gene053083 | MS.gene072181 | 0.802293 | 6.01E-49 | -1.69E-46 |
MS.gene053203 | MS.gene072181 | -0.808886 | 2.48E-50 | -1.69E-46 |
MS.gene053549 | MS.gene072181 | 0.804454 | 2.14E-49 | -1.69E-46 |
MS.gene05470 | MS.gene072181 | -0.820817 | 5.61E-53 | -1.69E-46 |
MS.gene054954 | MS.gene072181 | -0.833587 | 4.90E-56 | -1.69E-46 |
MS.gene055362 | MS.gene072181 | -0.818734 | 1.68E-52 | -1.69E-46 |
MS.gene055502 | MS.gene072181 | -0.816485 | 5.40E-52 | -1.69E-46 |
MS.gene055577 | MS.gene072181 | -0.803553 | 3.30E-49 | -1.69E-46 |
MS.gene05589 | MS.gene072181 | -0.81397 | 1.95E-51 | -1.69E-46 |
MS.gene056504 | MS.gene072181 | -0.819502 | 1.12E-52 | -1.69E-46 |
MS.gene056510 | MS.gene072181 | -0.823484 | 1.35E-53 | -1.69E-46 |
MS.gene056610 | MS.gene072181 | -0.814378 | 1.59E-51 | -1.69E-46 |
MS.gene056692 | MS.gene072181 | -0.800771 | 1.23E-48 | -1.69E-46 |
MS.gene057014 | MS.gene072181 | 0.815013 | 1.15E-51 | -1.69E-46 |
MS.gene05837 | MS.gene072181 | -0.802784 | 4.76E-49 | -1.69E-46 |
MS.gene058419 | MS.gene072181 | -0.807728 | 4.39E-50 | -1.69E-46 |
MS.gene058773 | MS.gene072181 | -0.810095 | 1.37E-50 | -1.69E-46 |
MS.gene059022 | MS.gene072181 | -0.825865 | 3.71E-54 | -1.69E-46 |
MS.gene059023 | MS.gene072181 | -0.833362 | 5.57E-56 | -1.69E-46 |
MS.gene059677 | MS.gene072181 | -0.814338 | 1.62E-51 | -1.69E-46 |
MS.gene059718 | MS.gene072181 | -0.806774 | 6.99E-50 | -1.69E-46 |
MS.gene059837 | MS.gene072181 | -0.815922 | 7.21E-52 | -1.69E-46 |
MS.gene060703 | MS.gene072181 | -0.819967 | 8.79E-53 | -1.69E-46 |
MS.gene060762 | MS.gene072181 | -0.806655 | 7.40E-50 | -1.69E-46 |
MS.gene06077 | MS.gene072181 | -0.850664 | 1.47E-60 | -1.69E-46 |
MS.gene060982 | MS.gene072181 | -0.807888 | 4.06E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene072181 | MS.gene029672 | PPI |
MS.gene072181 | MS.gene031072 | PPI |
MS.gene072181 | MS.gene035175 | PPI |
MS.gene072181 | MS.gene58966 | PPI |
MS.gene072181 | MS.gene52552 | PPI |
MS.gene072181 | MS.gene62709 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072181.t1 | MTR_8g015220 | 98.033 | 305 | 6 | 0 | 1 | 305 | 1 | 305 | 0.0 | 626 |
MS.gene072181.t1 | MTR_8g015220 | 97.770 | 269 | 6 | 0 | 1 | 269 | 1 | 269 | 0.0 | 555 |
MS.gene072181.t1 | MTR_8g102150 | 72.871 | 317 | 73 | 3 | 1 | 305 | 1 | 316 | 2.79e-172 | 479 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072181.t1 | AT1G14520 | 76.699 | 309 | 68 | 2 | 1 | 305 | 1 | 309 | 4.72e-178 | 494 |
MS.gene072181.t1 | AT1G14520 | 75.962 | 312 | 67 | 2 | 1 | 305 | 1 | 311 | 6.67e-177 | 491 |
MS.gene072181.t1 | AT1G14520 | 75.962 | 312 | 67 | 2 | 1 | 305 | 1 | 311 | 6.67e-177 | 491 |
MS.gene072181.t1 | AT1G14520 | 75.658 | 304 | 66 | 2 | 1 | 297 | 1 | 303 | 2.00e-169 | 473 |
MS.gene072181.t1 | AT4G26260 | 71.384 | 318 | 78 | 1 | 1 | 305 | 1 | 318 | 4.68e-169 | 471 |
MS.gene072181.t1 | AT4G26260 | 71.698 | 318 | 76 | 2 | 1 | 305 | 1 | 317 | 6.00e-169 | 471 |
MS.gene072181.t1 | AT2G19800 | 71.562 | 320 | 73 | 5 | 1 | 305 | 1 | 317 | 6.92e-169 | 471 |
MS.gene072181.t1 | AT5G56640 | 75.090 | 277 | 68 | 1 | 30 | 305 | 38 | 314 | 8.45e-161 | 451 |
MS.gene072181.t1 | AT5G56640 | 75.090 | 277 | 68 | 1 | 30 | 305 | 8 | 284 | 1.36e-160 | 449 |
Find 65 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTGATCAACCTGATTATTT+TGG | 0.171522 | 8.1:+82390299 | MS.gene072181:CDS |
GTGCTTCTCCTTCCTAGTTT+TGG | 0.177602 | 8.1:+82392640 | MS.gene072181:CDS |
TTTCACCACTTCAGCTTTGC+AGG | 0.279549 | 8.1:-82393833 | None:intergenic |
AAGAAAATGAGAGAGGAGTA+TGG | 0.295141 | 8.1:+82392285 | MS.gene072181:CDS |
GAAGATTGGCTGCACTTAAC+TGG | 0.338706 | 8.1:+82392453 | MS.gene072181:CDS |
AGGAGTATGGGAAATTGAAC+AGG | 0.341571 | 8.1:+82392298 | MS.gene072181:CDS |
TCTGCATACAACACTAGATA+TGG | 0.369151 | 8.1:+82393065 | MS.gene072181:CDS |
TCATCAAATCTGCAACCAAC+TGG | 0.370493 | 8.1:-82392896 | None:intergenic |
TAGCTTCAGCTGTTTGTAGA+AGG | 0.371351 | 8.1:-82392410 | None:intergenic |
TCAATGAGGGAGATGTAGTA+TGG | 0.376465 | 8.1:-82393676 | None:intergenic |
TATGCAGAGTTGTTATAGTC+TGG | 0.382673 | 8.1:-82393050 | None:intergenic |
ATGCCACAAGCCAACTCATT+TGG | 0.388090 | 8.1:+82391017 | MS.gene072181:CDS |
ATTTGTGGTTCATCCAAGTC+AGG | 0.423334 | 8.1:-82392381 | None:intergenic |
AAGTGCAGCCAATCTTCATT+TGG | 0.432228 | 8.1:-82392447 | None:intergenic |
CTTCCTCAATGGGCTGTTGT+AGG | 0.437391 | 8.1:+82392667 | MS.gene072181:CDS |
ACAGGGTAGAGATGAGCATA+TGG | 0.463184 | 8.1:+82392316 | MS.gene072181:CDS |
GAGATTAAGTACCATGGATA+AGG | 0.469407 | 8.1:-82392476 | None:intergenic |
TGTAGAAGGTGCTCAATTTG+TGG | 0.482816 | 8.1:-82392396 | None:intergenic |
AGGACTATCCAAATGAAGAT+TGG | 0.484923 | 8.1:+82392439 | MS.gene072181:CDS |
CTACATCTCCCTCATTGAAA+AGG | 0.497519 | 8.1:+82393681 | MS.gene072181:CDS |
AGGATGTTGAGAACTTGAAA+TGG | 0.504789 | 8.1:+82393472 | MS.gene072181:CDS |
CACTTAACTGGCCTTATCCA+TGG | 0.511389 | 8.1:+82392465 | MS.gene072181:CDS |
TGAACTTACCATAAAATGAA+TGG | 0.516608 | 8.1:-82393298 | None:intergenic |
GGTTGTTAATGAGACAGAAC+TGG | 0.517238 | 8.1:+82390974 | MS.gene072181:CDS |
AACAGCTGAAGCTATAAGAA+AGG | 0.518742 | 8.1:+82392419 | MS.gene072181:CDS |
TGCTTACAAAATCAAAGGAT+TGG | 0.521858 | 8.1:-82392114 | None:intergenic |
AGAAAATGAGAGAGGAGTAT+GGG | 0.536046 | 8.1:+82392286 | MS.gene072181:CDS |
ACTTCCCTGCAAAGCTGAAG+TGG | 0.537264 | 8.1:+82393828 | MS.gene072181:CDS |
AGTGAGAGTTGATGTTGAAA+AGG | 0.538804 | 8.1:+82393648 | MS.gene072181:CDS |
GCTGAAAGTGAGAGGCAAGA+AGG | 0.539626 | 8.1:+82392058 | MS.gene072181:CDS |
TTAACAATGTCATGATGTCA+TGG | 0.550047 | 8.1:+82393111 | MS.gene072181:CDS |
AAGTGAGAGGCAAGAAGGAG+TGG | 0.553115 | 8.1:+82392063 | MS.gene072181:CDS |
GGATGAGAGTGACCCTGACT+TGG | 0.554579 | 8.1:+82392368 | MS.gene072181:CDS |
TAATGAGACAGAACTGGAGT+TGG | 0.556666 | 8.1:+82390980 | MS.gene072181:CDS |
AATCAAAGGATTGGTAAATG+TGG | 0.558930 | 8.1:-82392105 | None:intergenic |
TTTGTAGCTTTACATAGGGA+AGG | 0.563583 | 8.1:+82393423 | MS.gene072181:intron |
ACAGGTGAAGAAAATGAGAG+AGG | 0.565209 | 8.1:+82392278 | MS.gene072181:intron |
GATTACCTTGTGGTGGACAA+TGG | 0.568396 | 8.1:-82392921 | None:intergenic |
TAACAATGTCATGATGTCAT+GGG | 0.569057 | 8.1:+82393112 | MS.gene072181:CDS |
GTAGATGCTTACAAAATCAA+AGG | 0.571608 | 8.1:-82392119 | None:intergenic |
CATCAAATCTGCAACCAACT+GGG | 0.577918 | 8.1:-82392895 | None:intergenic |
CAGGGTAGAGATGAGCATAT+GGG | 0.584187 | 8.1:+82392317 | MS.gene072181:CDS |
GGAATTTACTCTGAGAAATG+TGG | 0.598713 | 8.1:+82393086 | MS.gene072181:CDS |
TTCACCACTTCAGCTTTGCA+GGG | 0.603653 | 8.1:-82393832 | None:intergenic |
GAATAAGACTACTCTACCCT+CGG | 0.603870 | 8.1:+82393253 | MS.gene072181:CDS |
AATAATCAGGTTGATCAATG+AGG | 0.611524 | 8.1:-82390295 | None:intergenic |
TATGATGAACATAGCAGCCG+AGG | 0.612512 | 8.1:-82393270 | None:intergenic |
TTTGTGGTTCATCCAAGTCA+GGG | 0.617345 | 8.1:-82392380 | None:intergenic |
AAAAGTGTGACCAAATGAGT+TGG | 0.621220 | 8.1:-82391027 | None:intergenic |
GTTGAATGATTACCTTGTGG+TGG | 0.621848 | 8.1:-82392928 | None:intergenic |
ATCTGATGTTGAGTCAAAGA+CGG | 0.628431 | 8.1:+82390950 | MS.gene072181:CDS |
GGAGTATGGGAAATTGAACA+GGG | 0.629264 | 8.1:+82392299 | MS.gene072181:CDS |
ATTATGCTGCTGAAAGTGAG+AGG | 0.640938 | 8.1:+82392050 | MS.gene072181:CDS |
TGAACTTCTGAATGAAGTGG+TGG | 0.645478 | 8.1:+82392347 | MS.gene072181:CDS |
TAAACACTTGATGAATGATG+AGG | 0.651355 | 8.1:+82393452 | MS.gene072181:CDS |
AACAATGTCATGATGTCATG+GGG | 0.651705 | 8.1:+82393113 | MS.gene072181:CDS |
ATAGGTGACATATACCCAGT+TGG | 0.653485 | 8.1:+82392881 | MS.gene072181:intron |
TGAATCCATTGTCCACCACA+AGG | 0.657684 | 8.1:+82392916 | MS.gene072181:CDS |
ACAGAACTGGAGTTGGATGG+TGG | 0.659727 | 8.1:+82390987 | MS.gene072181:CDS |
TGACCAAATGAGTTGGCTTG+TGG | 0.660149 | 8.1:-82391020 | None:intergenic |
TTGTGAACTTCTGAATGAAG+TGG | 0.665499 | 8.1:+82392344 | MS.gene072181:CDS |
GAGACAGAACTGGAGTTGGA+TGG | 0.674706 | 8.1:+82390984 | MS.gene072181:CDS |
ATGATGAACATAGCAGCCGA+GGG | 0.676043 | 8.1:-82393269 | None:intergenic |
TTACCTACAACAGCCCATTG+AGG | 0.688120 | 8.1:-82392670 | None:intergenic |
TGATGTTGAGTCAAAGACGG+TGG | 0.761342 | 8.1:+82390953 | MS.gene072181:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAATAAATTCAGATAAAAT+TGG | + | chr8.1:82391249-82391268 | MS.gene072181:intron | 10.0% |
!! | TTACATTTATATAATATTAG+CGG | + | chr8.1:82392701-82392720 | MS.gene072181:intron | 10.0% |
!!! | TTTGTTTTCTATTAATTAAT+TGG | + | chr8.1:82390902-82390921 | MS.gene072181:intron | 10.0% |
!! | AAAAATAAATGAAAGATTTG+TGG | - | chr8.1:82392144-82392163 | None:intergenic | 15.0% |
!! | AATCAGATCTATAAAAAAAT+TGG | + | chr8.1:82390812-82390831 | MS.gene072181:intron | 15.0% |
!! | ATCAGATCTATAAAAAAATT+GGG | + | chr8.1:82390813-82390832 | MS.gene072181:intron | 15.0% |
!! | TAAAAATTACCAAAATAATC+AGG | - | chr8.1:82390311-82390330 | None:intergenic | 15.0% |
!!! | ATTTTGCTAAAAATAAAGAA+AGG | - | chr8.1:82390336-82390355 | None:intergenic | 15.0% |
!!! | GAACTTTTAATGTTAATTTT+TGG | - | chr8.1:82393348-82393367 | None:intergenic | 15.0% |
!!! | GAAGAAAGTTTTAAAAATTT+GGG | + | chr8.1:82393207-82393226 | MS.gene072181:intron | 15.0% |
!!! | TCACAAATTTCATTTTTTTT+TGG | + | chr8.1:82390374-82390393 | MS.gene072181:intron | 15.0% |
!!! | TGAAGAAAGTTTTAAAAATT+TGG | + | chr8.1:82393206-82393225 | MS.gene072181:intron | 15.0% |
!!! | TTAGAGAATATATTCATTTT+TGG | - | chr8.1:82391814-82391833 | None:intergenic | 15.0% |
!!! | TTTCATCCATATTTTTTAAA+CGG | - | chr8.1:82391465-82391484 | None:intergenic | 15.0% |
!!! | TTTTGCTAAAAATAAAGAAA+GGG | - | chr8.1:82390335-82390354 | None:intergenic | 15.0% |
!! | AAAAAAATGAAATTTGTGAG+AGG | - | chr8.1:82390373-82390392 | None:intergenic | 20.0% |
!! | AAAAAATGAAATTTGTGAGA+GGG | - | chr8.1:82390372-82390391 | None:intergenic | 20.0% |
!! | AAATTAAAATGTGAATCGTA+CGG | - | chr8.1:82390700-82390719 | None:intergenic | 20.0% |
!! | AATCATAGAGCAAAAATAAT+AGG | - | chr8.1:82391724-82391743 | None:intergenic | 20.0% |
!! | AATTGGTTATTAAACCAAAA+AGG | - | chr8.1:82392596-82392615 | None:intergenic | 20.0% |
!! | ACAAGTTCAAAAGTTAATTA+AGG | + | chr8.1:82391309-82391328 | MS.gene072181:intron | 20.0% |
!! | ACATTTCCGTTTAAAAAATA+TGG | + | chr8.1:82391456-82391475 | MS.gene072181:intron | 20.0% |
!! | ATATAATATTAGCGGAAAAA+CGG | + | chr8.1:82392709-82392728 | MS.gene072181:intron | 20.0% |
!! | ATCATAGAGCAAAAATAATA+GGG | - | chr8.1:82391723-82391742 | None:intergenic | 20.0% |
!! | ATGAACATTATAACATATAC+AGG | + | chr8.1:82392260-82392279 | MS.gene072181:intron | 20.0% |
!! | ATTGGTTATTAAACCAAAAA+GGG | - | chr8.1:82392595-82392614 | None:intergenic | 20.0% |
!! | CATGTAGAAAAAACAAATTA+TGG | + | chr8.1:82392973-82392992 | MS.gene072181:intron | 20.0% |
!! | GAATACTTGATTTATGAAAT+TGG | + | chr8.1:82390730-82390749 | MS.gene072181:intron | 20.0% |
!! | TAGTAAAAACTTAATACTCT+AGG | - | chr8.1:82393786-82393805 | None:intergenic | 20.0% |
!! | TTGGAAATGTAACATATATT+AGG | - | chr8.1:82393009-82393028 | None:intergenic | 20.0% |
!!! | AAAAAATGAAATTTTCTGAG+AGG | - | chr8.1:82390452-82390471 | None:intergenic | 20.0% |
!!! | AAAAATGAAATTTTCTGAGA+GGG | - | chr8.1:82390451-82390470 | None:intergenic | 20.0% |
!!! | ACATTGAATTGAATTTTGAA+AGG | - | chr8.1:82393167-82393186 | None:intergenic | 20.0% |
!!! | ACGCTTTTATATTGATATAT+CGG | - | chr8.1:82392746-82392765 | None:intergenic | 20.0% |
!!! | AGATAATATGGTGTTTTTTT+TGG | + | chr8.1:82391217-82391236 | MS.gene072181:intron | 20.0% |
!!! | ATAAGATACCATTCATTTTA+TGG | + | chr8.1:82393290-82393309 | MS.gene072181:CDS | 20.0% |
!!! | ATTTTTTTTTCTTCCCTTTT+TGG | + | chr8.1:82392579-82392598 | MS.gene072181:intron | 20.0% |
!!! | CATTCAACTTATTTTCTATT+TGG | + | chr8.1:82392943-82392962 | MS.gene072181:intron | 20.0% |
!!! | GAACTTTTTTATATCGAATT+TGG | + | chr8.1:82391182-82391201 | MS.gene072181:intron | 20.0% |
!!! | TTGAAACTTTTTTTGACAAA+AGG | + | chr8.1:82390841-82390860 | MS.gene072181:intron | 20.0% |
!!! | TTTATTTTTGATTTTGCCAT+AGG | - | chr8.1:82390501-82390520 | None:intergenic | 20.0% |
!!! | TTTTTTATATCGAATTTGGA+TGG | + | chr8.1:82391186-82391205 | MS.gene072181:intron | 20.0% |
! | AAAAAAGTTCTTATCCAGAT+CGG | - | chr8.1:82391172-82391191 | None:intergenic | 25.0% |
! | AAAAATGAAATTTGTGAGAG+GGG | - | chr8.1:82390371-82390390 | None:intergenic | 25.0% |
! | AACTATCAATAGGGTTATAT+TGG | - | chr8.1:82391545-82391564 | None:intergenic | 25.0% |
! | ACCTATACCAATATAGAAAA+TGG | - | chr8.1:82392867-82392886 | None:intergenic | 25.0% |
! | AGCTATTGTTAATCATAATC+AGG | + | chr8.1:82392026-82392045 | MS.gene072181:intron | 25.0% |
! | ATATGAGATTGTGAATTTGT+TGG | + | chr8.1:82390658-82390677 | MS.gene072181:intron | 25.0% |
! | ATGGATAGATCTAGATAATA+TGG | + | chr8.1:82391205-82391224 | MS.gene072181:intron | 25.0% |
! | CTAGCTGAAAAAAATTAACA+AGG | + | chr8.1:82393739-82393758 | MS.gene072181:intron | 25.0% |
! | GCATACACTTAAAAATATGT+AGG | + | chr8.1:82392218-82392237 | MS.gene072181:intron | 25.0% |
! | GCTATTGTTAATCATAATCA+GGG | + | chr8.1:82392027-82392046 | MS.gene072181:intron | 25.0% |
! | TCATAACCAATCAAATCAAA+TGG | + | chr8.1:82393366-82393385 | MS.gene072181:intron | 25.0% |
! | TGAACTTACCATAAAATGAA+TGG | - | chr8.1:82393301-82393320 | None:intergenic | 25.0% |
! | TTTCCTTAAAATACTGGAAT+TGG | - | chr8.1:82393028-82393047 | None:intergenic | 25.0% |
!! | ACCATTTTCTATATTGGTAT+AGG | + | chr8.1:82392863-82392882 | MS.gene072181:intron | 25.0% |
!! | ATTGATCAACCTGATTATTT+TGG | + | chr8.1:82390299-82390318 | MS.gene072181:CDS | 25.0% |
!! | TATGAGATTGTGAATTTGTT+GGG | + | chr8.1:82390659-82390678 | MS.gene072181:intron | 25.0% |
!! | TCTCTTACCATTTTCTATAT+TGG | + | chr8.1:82392857-82392876 | MS.gene072181:intron | 25.0% |
!! | TTATGCTAACTTGTACTTAA+AGG | + | chr8.1:82391285-82391304 | MS.gene072181:intron | 25.0% |
!! | TTTATATTGATATATCGGCT+CGG | - | chr8.1:82392741-82392760 | None:intergenic | 25.0% |
!! | TTTCCAATTCCAGTATTTTA+AGG | + | chr8.1:82393022-82393041 | MS.gene072181:intron | 25.0% |
!! | TTTTTGCTCTATGATTCTTT+AGG | + | chr8.1:82391728-82391747 | MS.gene072181:intron | 25.0% |
!!! | AAAATGAAATTTTCTGAGAG+GGG | - | chr8.1:82390450-82390469 | None:intergenic | 25.0% |
!!! | AAAATTTGGGTGTTGTTTTA+AGG | + | chr8.1:82393220-82393239 | MS.gene072181:intron | 25.0% |
!!! | AAAGTCTTTTAACTAACATG+TGG | - | chr8.1:82391985-82392004 | None:intergenic | 25.0% |
!!! | AATTGACCATTTGATTTGAT+TGG | - | chr8.1:82393375-82393394 | None:intergenic | 25.0% |
!!! | ATGTTTTTTTTTTGCTCCTA+TGG | + | chr8.1:82390482-82390501 | MS.gene072181:intron | 25.0% |
!!! | TGTATGTACATTTTTTCAGA+AGG | - | chr8.1:82392167-82392186 | None:intergenic | 25.0% |
!!! | TGTGCATAATCTGTATTTTT+TGG | + | chr8.1:82390613-82390632 | MS.gene072181:intron | 25.0% |
!!! | TTGTTTTGTAGCTTTACATA+GGG | + | chr8.1:82393419-82393438 | MS.gene072181:intron | 25.0% |
!!! | TTTGTTTTGTAGCTTTACAT+AGG | + | chr8.1:82393418-82393437 | MS.gene072181:intron | 25.0% |
!!! | TTTTTTTCAGCTAGAAACAA+AGG | - | chr8.1:82393733-82393752 | None:intergenic | 25.0% |
AAAGTAGAGATTAAGTACCA+TGG | - | chr8.1:82392485-82392504 | None:intergenic | 30.0% | |
AATACTCTAGGCAAAAACTA+GGG | - | chr8.1:82393774-82393793 | None:intergenic | 30.0% | |
AGGAAATAAAAGCTTTCTTG+AGG | - | chr8.1:82393713-82393732 | None:intergenic | 30.0% | |
AGTTACAATCAAAGGGAAAA+TGG | - | chr8.1:82390593-82390612 | None:intergenic | 30.0% | |
ATGCACAAGTTACAATCAAA+GGG | - | chr8.1:82390600-82390619 | None:intergenic | 30.0% | |
ATTTGAATCAATGCAGATCT+TGG | + | chr8.1:82392613-82392632 | MS.gene072181:intron | 30.0% | |
CAAGAATCACGAAATTAACT+GGG | - | chr8.1:82390792-82390811 | None:intergenic | 30.0% | |
CAGTAGTTTCAATCGAATTT+GGG | + | chr8.1:82391594-82391613 | MS.gene072181:intron | 30.0% | |
CGGTTAAAGTTAAAATCCAT+CGG | - | chr8.1:82391573-82391592 | None:intergenic | 30.0% | |
GTAGATGCTTACAAAATCAA+AGG | - | chr8.1:82392122-82392141 | None:intergenic | 30.0% | |
TAAACACTTGATGAATGATG+AGG | + | chr8.1:82393452-82393471 | MS.gene072181:CDS | 30.0% | |
TAACAATGTCATGATGTCAT+GGG | + | chr8.1:82393112-82393131 | MS.gene072181:CDS | 30.0% | |
TAATACTCTAGGCAAAAACT+AGG | - | chr8.1:82393775-82393794 | None:intergenic | 30.0% | |
TATGCACAAGTTACAATCAA+AGG | - | chr8.1:82390601-82390620 | None:intergenic | 30.0% | |
TCAAGAATCACGAAATTAAC+TGG | - | chr8.1:82390793-82390812 | None:intergenic | 30.0% | |
TGCTTACAAAATCAAAGGAT+TGG | - | chr8.1:82392117-82392136 | None:intergenic | 30.0% | |
TTAAAGTTAAAATCCATCGG+CGG | - | chr8.1:82391570-82391589 | None:intergenic | 30.0% | |
TTAACAATGTCATGATGTCA+TGG | + | chr8.1:82393111-82393130 | MS.gene072181:CDS | 30.0% | |
! | AATCAAAGGATTGGTAAATG+TGG | - | chr8.1:82392108-82392127 | None:intergenic | 30.0% |
! | CTGGATTTTCCTTAAAATAC+TGG | - | chr8.1:82393034-82393053 | None:intergenic | 30.0% |
! | GGATTAAACTTGTCATTTCA+CGG | + | chr8.1:82391615-82391634 | MS.gene072181:intron | 30.0% |
! | TAAGTTGAATGATTACCTTG+TGG | - | chr8.1:82392934-82392953 | None:intergenic | 30.0% |
!! | AATAATCAGGTTGATCAATG+AGG | - | chr8.1:82390298-82390317 | None:intergenic | 30.0% |
!! | AGATCTGCATTGATTCAAAT+TGG | - | chr8.1:82392613-82392632 | None:intergenic | 30.0% |
!! | GGGTTATATTGGTAATTTTG+TGG | - | chr8.1:82391534-82391553 | None:intergenic | 30.0% |
!!! | CGATGGATTTTAACTTTAAC+CGG | + | chr8.1:82391571-82391590 | MS.gene072181:intron | 30.0% |
!!! | GTATTTTTTGGTCTCGATAA+TGG | + | chr8.1:82390625-82390644 | MS.gene072181:intron | 30.0% |
AACAATGTCATGATGTCATG+GGG | + | chr8.1:82393113-82393132 | MS.gene072181:CDS | 35.0% | |
AACAGCTGAAGCTATAAGAA+AGG | + | chr8.1:82392419-82392438 | MS.gene072181:CDS | 35.0% | |
AAGAAAATGAGAGAGGAGTA+TGG | + | chr8.1:82392285-82392304 | MS.gene072181:CDS | 35.0% | |
AATAGAGGAAAAGGCTCAAT+GGG | - | chr8.1:82391759-82391778 | None:intergenic | 35.0% | |
AATTCGATTGAAACTACTGC+CGG | - | chr8.1:82391593-82391612 | None:intergenic | 35.0% | |
ACCAAGTAGTACTAACATGT+GGG | - | chr8.1:82391848-82391867 | None:intergenic | 35.0% | |
AGGACTATCCAAATGAAGAT+TGG | + | chr8.1:82392439-82392458 | MS.gene072181:CDS | 35.0% | |
AGGATGTTGAGAACTTGAAA+TGG | + | chr8.1:82393472-82393491 | MS.gene072181:CDS | 35.0% | |
ATACTCTAGGCAAAAACTAG+GGG | - | chr8.1:82393773-82393792 | None:intergenic | 35.0% | |
ATCTGATGTTGAGTCAAAGA+CGG | + | chr8.1:82390950-82390969 | MS.gene072181:CDS | 35.0% | |
CCAGATCGGTATATTCAAAT+GGG | - | chr8.1:82391158-82391177 | None:intergenic | 35.0% | |
GAGATTAAGTACCATGGATA+AGG | - | chr8.1:82392479-82392498 | None:intergenic | 35.0% | |
GCAGTAGTTTCAATCGAATT+TGG | + | chr8.1:82391593-82391612 | MS.gene072181:intron | 35.0% | |
GTTAGTACTACTTGGTATGT+TGG | + | chr8.1:82391852-82391871 | MS.gene072181:intron | 35.0% | |
GTTGGTACTACTTGATATGT+TGG | + | chr8.1:82391870-82391889 | MS.gene072181:intron | 35.0% | |
TAATAGAGGAAAAGGCTCAA+TGG | - | chr8.1:82391760-82391779 | None:intergenic | 35.0% | |
TACCAAGTAGTACTAACATG+TGG | - | chr8.1:82391849-82391868 | None:intergenic | 35.0% | |
TATGCAGAGTTGTTATAGTC+TGG | - | chr8.1:82393053-82393072 | None:intergenic | 35.0% | |
TCCAGATCGGTATATTCAAA+TGG | - | chr8.1:82391159-82391178 | None:intergenic | 35.0% | |
TCTGCATACAACACTAGATA+TGG | + | chr8.1:82393065-82393084 | MS.gene072181:CDS | 35.0% | |
TTGTGAACTTCTGAATGAAG+TGG | + | chr8.1:82392344-82392363 | MS.gene072181:CDS | 35.0% | |
TTGTGATCCACAGTAGAATT+AGG | - | chr8.1:82391917-82391936 | None:intergenic | 35.0% | |
! | AAAAGTGTGACCAAATGAGT+TGG | - | chr8.1:82391030-82391049 | None:intergenic | 35.0% |
! | ACTCATTTGGTCACACTTTT+AGG | + | chr8.1:82391030-82391049 | MS.gene072181:CDS | 35.0% |
! | AGAAAATGAGAGAGGAGTAT+GGG | + | chr8.1:82392286-82392305 | MS.gene072181:CDS | 35.0% |
! | ATTGAGCCTTTTCCTCTATT+AGG | + | chr8.1:82391759-82391778 | MS.gene072181:intron | 35.0% |
! | GGAATTTACTCTGAGAAATG+TGG | + | chr8.1:82393086-82393105 | MS.gene072181:CDS | 35.0% |
! | TTTGTAGCTTTACATAGGGA+AGG | + | chr8.1:82393423-82393442 | MS.gene072181:intron | 35.0% |
!! | AGTGAGAGTTGATGTTGAAA+AGG | + | chr8.1:82393648-82393667 | MS.gene072181:CDS | 35.0% |
!!! | ATTTGGGTGTTGTTTTAAGG+TGG | + | chr8.1:82393223-82393242 | MS.gene072181:intron | 35.0% |
AAGTGCAGCCAATCTTCATT+TGG | - | chr8.1:82392450-82392469 | None:intergenic | 40.0% | |
ACAGGTGAAGAAAATGAGAG+AGG | + | chr8.1:82392278-82392297 | MS.gene072181:intron | 40.0% | |
AGACACACTTCAACACTAGT+GGG | - | chr8.1:82391787-82391806 | None:intergenic | 40.0% | |
ATAGGTGACATATACCCAGT+TGG | + | chr8.1:82392881-82392900 | MS.gene072181:intron | 40.0% | |
ATCGGCGGTTAACTATCAAT+AGG | - | chr8.1:82391555-82391574 | None:intergenic | 40.0% | |
ATTATGCTGCTGAAAGTGAG+AGG | + | chr8.1:82392050-82392069 | MS.gene072181:CDS | 40.0% | |
ATTTGTGGTTCATCCAAGTC+AGG | - | chr8.1:82392384-82392403 | None:intergenic | 40.0% | |
CATCAAATCTGCAACCAACT+GGG | - | chr8.1:82392898-82392917 | None:intergenic | 40.0% | |
CCCATTTGAATATACCGATC+TGG | + | chr8.1:82391155-82391174 | MS.gene072181:intron | 40.0% | |
CTACATCTCCCTCATTGAAA+AGG | + | chr8.1:82393681-82393700 | MS.gene072181:CDS | 40.0% | |
GAATAAGACTACTCTACCCT+CGG | + | chr8.1:82393253-82393272 | MS.gene072181:CDS | 40.0% | |
GCCTGATTGACACAGTAAAT+GGG | - | chr8.1:82391701-82391720 | None:intergenic | 40.0% | |
GGAGTATGGGAAATTGAACA+GGG | + | chr8.1:82392299-82392318 | MS.gene072181:CDS | 40.0% | |
GGTTGTTAATGAGACAGAAC+TGG | + | chr8.1:82390974-82390993 | MS.gene072181:CDS | 40.0% | |
GTTGAATGATTACCTTGTGG+TGG | - | chr8.1:82392931-82392950 | None:intergenic | 40.0% | |
TAATGAGACAGAACTGGAGT+TGG | + | chr8.1:82390980-82390999 | MS.gene072181:CDS | 40.0% | |
TAGCTTCAGCTGTTTGTAGA+AGG | - | chr8.1:82392413-82392432 | None:intergenic | 40.0% | |
TCAATGAGGGAGATGTAGTA+TGG | - | chr8.1:82393679-82393698 | None:intergenic | 40.0% | |
TCACTTGCCTAATTCTACTG+TGG | + | chr8.1:82391907-82391926 | MS.gene072181:intron | 40.0% | |
TCATCAAATCTGCAACCAAC+TGG | - | chr8.1:82392899-82392918 | None:intergenic | 40.0% | |
TCCCACATGTTAGTACTACT+TGG | + | chr8.1:82391844-82391863 | MS.gene072181:intron | 40.0% | |
TCCCATTTACTGTGTCAATC+AGG | + | chr8.1:82391697-82391716 | MS.gene072181:intron | 40.0% | |
TCGGCGGTTAACTATCAATA+GGG | - | chr8.1:82391554-82391573 | None:intergenic | 40.0% | |
TGAACTTCTGAATGAAGTGG+TGG | + | chr8.1:82392347-82392366 | MS.gene072181:CDS | 40.0% | |
TGATTGACACAGTAAATGGG+AGG | - | chr8.1:82391698-82391717 | None:intergenic | 40.0% | |
TTTGTGGTTCATCCAAGTCA+GGG | - | chr8.1:82392383-82392402 | None:intergenic | 40.0% | |
! | AGGAGTATGGGAAATTGAAC+AGG | + | chr8.1:82392298-82392317 | MS.gene072181:CDS | 40.0% |
! | AGGTGCTTACCTTTTCAATG+AGG | - | chr8.1:82393693-82393712 | None:intergenic | 40.0% |
! | GGTGCTTACCTTTTCAATGA+GGG | - | chr8.1:82393692-82393711 | None:intergenic | 40.0% |
! | TATTGATAGTTAACCGCCGA+TGG | + | chr8.1:82391554-82391573 | MS.gene072181:intron | 40.0% |
!! | TGCTTCTCCTTCCTAGTTTT+GGG | + | chr8.1:82392641-82392660 | MS.gene072181:CDS | 40.0% |
!! | TGTAGAAGGTGCTCAATTTG+TGG | - | chr8.1:82392399-82392418 | None:intergenic | 40.0% |
!!! | GTGTTGTTTTAAGGTGGCAA+AGG | + | chr8.1:82393229-82393248 | MS.gene072181:intron | 40.0% |
ACAGGGTAGAGATGAGCATA+TGG | + | chr8.1:82392316-82392335 | MS.gene072181:CDS | 45.0% | |
ATGATGAACATAGCAGCCGA+GGG | - | chr8.1:82393272-82393291 | None:intergenic | 45.0% | |
ATGCCACAAGCCAACTCATT+TGG | + | chr8.1:82391017-82391036 | MS.gene072181:CDS | 45.0% | |
CAGGGTAGAGATGAGCATAT+GGG | + | chr8.1:82392317-82392336 | MS.gene072181:CDS | 45.0% | |
GACACACTTCAACACTAGTG+GGG | - | chr8.1:82391786-82391805 | None:intergenic | 45.0% | |
GAGACACACTTCAACACTAG+TGG | - | chr8.1:82391788-82391807 | None:intergenic | 45.0% | |
GCTCTATGATTCTTTAGGCC+AGG | + | chr8.1:82391733-82391752 | MS.gene072181:intron | 45.0% | |
GGCCTGATTGACACAGTAAA+TGG | - | chr8.1:82391702-82391721 | None:intergenic | 45.0% | |
TATGATGAACATAGCAGCCG+AGG | - | chr8.1:82393273-82393292 | None:intergenic | 45.0% | |
TGAATCCATTGTCCACCACA+AGG | + | chr8.1:82392916-82392935 | MS.gene072181:CDS | 45.0% | |
TGATGTTGAGTCAAAGACGG+TGG | + | chr8.1:82390953-82390972 | MS.gene072181:CDS | 45.0% | |
TGGGGTCCTAATAGAGGAAA+AGG | - | chr8.1:82391768-82391787 | None:intergenic | 45.0% | |
TTACCTACAACAGCCCATTG+AGG | - | chr8.1:82392673-82392692 | None:intergenic | 45.0% | |
! | GAAGATTGGCTGCACTTAAC+TGG | + | chr8.1:82392453-82392472 | MS.gene072181:CDS | 45.0% |
! | GTGCTTCTCCTTCCTAGTTT+TGG | + | chr8.1:82392640-82392659 | MS.gene072181:CDS | 45.0% |
!! | CACTTAACTGGCCTTATCCA+TGG | + | chr8.1:82392465-82392484 | MS.gene072181:CDS | 45.0% |
!! | GATTACCTTGTGGTGGACAA+TGG | - | chr8.1:82392924-82392943 | None:intergenic | 45.0% |
!! | TGACCAAATGAGTTGGCTTG+TGG | - | chr8.1:82391023-82391042 | None:intergenic | 45.0% |
!! | TTTTGGGGGACTTCCTCAAT+GGG | + | chr8.1:82392657-82392676 | MS.gene072181:CDS | 45.0% |
!!! | CTTCTCCTTCCTAGTTTTGG+GGG | + | chr8.1:82392643-82392662 | MS.gene072181:CDS | 45.0% |
!!! | GCTTCTCCTTCCTAGTTTTG+GGG | + | chr8.1:82392642-82392661 | MS.gene072181:CDS | 45.0% |
!! | TATTATTATAAAATTATTAC+AGG | + | chr8.1:82390927-82390946 | MS.gene072181:intron | 5.0% |
AAGTGAGAGGCAAGAAGGAG+TGG | + | chr8.1:82392063-82392082 | MS.gene072181:CDS | 50.0% | |
ACAGAACTGGAGTTGGATGG+TGG | + | chr8.1:82390987-82391006 | MS.gene072181:CDS | 50.0% | |
ACTTCCCTGCAAAGCTGAAG+TGG | + | chr8.1:82393828-82393847 | MS.gene072181:CDS | 50.0% | |
CACTAGTGGGGTCCTAATAG+AGG | - | chr8.1:82391774-82391793 | None:intergenic | 50.0% | |
GAAGTCCCCCAAAACTAGGA+AGG | - | chr8.1:82392651-82392670 | None:intergenic | 50.0% | |
GAGACAGAACTGGAGTTGGA+TGG | + | chr8.1:82390984-82391003 | MS.gene072181:CDS | 50.0% | |
GCTGAAAGTGAGAGGCAAGA+AGG | + | chr8.1:82392058-82392077 | MS.gene072181:CDS | 50.0% | |
TGAGGAAGTCCCCCAAAACT+AGG | - | chr8.1:82392655-82392674 | None:intergenic | 50.0% | |
!! | CTTCCTCAATGGGCTGTTGT+AGG | + | chr8.1:82392667-82392686 | MS.gene072181:CDS | 50.0% |
!!! | GTTTTGGGGGACTTCCTCAA+TGG | + | chr8.1:82392656-82392675 | MS.gene072181:CDS | 50.0% |
AGGAAAAGGCTCAATGGGCC+TGG | - | chr8.1:82391754-82391773 | None:intergenic | 55.0% | |
GGATGAGAGTGACCCTGACT+TGG | + | chr8.1:82392368-82392387 | MS.gene072181:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 82390287 | 82393853 | 82390287 | ID=MS.gene072181 |
chr8.1 | mRNA | 82390287 | 82393853 | 82390287 | ID=MS.gene072181.t1;Parent=MS.gene072181 |
chr8.1 | exon | 82390287 | 82390320 | 82390287 | ID=MS.gene072181.t1.exon1;Parent=MS.gene072181.t1 |
chr8.1 | CDS | 82390287 | 82390320 | 82390287 | ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1 |
chr8.1 | exon | 82390949 | 82391051 | 82390949 | ID=MS.gene072181.t1.exon2;Parent=MS.gene072181.t1 |
chr8.1 | CDS | 82390949 | 82391051 | 82390949 | ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1 |
chr8.1 | exon | 82392048 | 82392129 | 82392048 | ID=MS.gene072181.t1.exon3;Parent=MS.gene072181.t1 |
chr8.1 | CDS | 82392048 | 82392129 | 82392048 | ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1 |
chr8.1 | exon | 82392282 | 82392486 | 82392282 | ID=MS.gene072181.t1.exon4;Parent=MS.gene072181.t1 |
chr8.1 | CDS | 82392282 | 82392486 | 82392282 | ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1 |
chr8.1 | exon | 82392629 | 82392688 | 82392629 | ID=MS.gene072181.t1.exon5;Parent=MS.gene072181.t1 |
chr8.1 | CDS | 82392629 | 82392688 | 82392629 | ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1 |
chr8.1 | exon | 82392885 | 82392937 | 82392885 | ID=MS.gene072181.t1.exon6;Parent=MS.gene072181.t1 |
chr8.1 | CDS | 82392885 | 82392937 | 82392885 | ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1 |
chr8.1 | exon | 82393035 | 82393157 | 82393035 | ID=MS.gene072181.t1.exon7;Parent=MS.gene072181.t1 |
chr8.1 | CDS | 82393035 | 82393157 | 82393035 | ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1 |
chr8.1 | exon | 82393242 | 82393311 | 82393242 | ID=MS.gene072181.t1.exon8;Parent=MS.gene072181.t1 |
chr8.1 | CDS | 82393242 | 82393311 | 82393242 | ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1 |
chr8.1 | exon | 82393430 | 82393508 | 82393430 | ID=MS.gene072181.t1.exon9;Parent=MS.gene072181.t1 |
chr8.1 | CDS | 82393430 | 82393508 | 82393430 | ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1 |
chr8.1 | exon | 82393621 | 82393702 | 82393621 | ID=MS.gene072181.t1.exon10;Parent=MS.gene072181.t1 |
chr8.1 | CDS | 82393621 | 82393702 | 82393621 | ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1 |
chr8.1 | exon | 82393827 | 82393853 | 82393827 | ID=MS.gene072181.t1.exon11;Parent=MS.gene072181.t1 |
chr8.1 | CDS | 82393827 | 82393853 | 82393827 | ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1 |
Gene Sequence |
Protein sequence |