AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072181


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072181.t1 MTR_8g015220 98.033 305 6 0 1 305 1 305 0.0 626
MS.gene072181.t1 MTR_8g015220 97.770 269 6 0 1 269 1 269 0.0 555
MS.gene072181.t1 MTR_8g102150 72.871 317 73 3 1 305 1 316 2.79e-172 479
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072181.t1 AT1G14520 76.699 309 68 2 1 305 1 309 4.72e-178 494
MS.gene072181.t1 AT1G14520 75.962 312 67 2 1 305 1 311 6.67e-177 491
MS.gene072181.t1 AT1G14520 75.962 312 67 2 1 305 1 311 6.67e-177 491
MS.gene072181.t1 AT1G14520 75.658 304 66 2 1 297 1 303 2.00e-169 473
MS.gene072181.t1 AT4G26260 71.384 318 78 1 1 305 1 318 4.68e-169 471
MS.gene072181.t1 AT4G26260 71.698 318 76 2 1 305 1 317 6.00e-169 471
MS.gene072181.t1 AT2G19800 71.562 320 73 5 1 305 1 317 6.92e-169 471
MS.gene072181.t1 AT5G56640 75.090 277 68 1 30 305 38 314 8.45e-161 451
MS.gene072181.t1 AT5G56640 75.090 277 68 1 30 305 8 284 1.36e-160 449

Find 65 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGATCAACCTGATTATTT+TGG 0.171522 8.1:+82390299 MS.gene072181:CDS
GTGCTTCTCCTTCCTAGTTT+TGG 0.177602 8.1:+82392640 MS.gene072181:CDS
TTTCACCACTTCAGCTTTGC+AGG 0.279549 8.1:-82393833 None:intergenic
AAGAAAATGAGAGAGGAGTA+TGG 0.295141 8.1:+82392285 MS.gene072181:CDS
GAAGATTGGCTGCACTTAAC+TGG 0.338706 8.1:+82392453 MS.gene072181:CDS
AGGAGTATGGGAAATTGAAC+AGG 0.341571 8.1:+82392298 MS.gene072181:CDS
TCTGCATACAACACTAGATA+TGG 0.369151 8.1:+82393065 MS.gene072181:CDS
TCATCAAATCTGCAACCAAC+TGG 0.370493 8.1:-82392896 None:intergenic
TAGCTTCAGCTGTTTGTAGA+AGG 0.371351 8.1:-82392410 None:intergenic
TCAATGAGGGAGATGTAGTA+TGG 0.376465 8.1:-82393676 None:intergenic
TATGCAGAGTTGTTATAGTC+TGG 0.382673 8.1:-82393050 None:intergenic
ATGCCACAAGCCAACTCATT+TGG 0.388090 8.1:+82391017 MS.gene072181:CDS
ATTTGTGGTTCATCCAAGTC+AGG 0.423334 8.1:-82392381 None:intergenic
AAGTGCAGCCAATCTTCATT+TGG 0.432228 8.1:-82392447 None:intergenic
CTTCCTCAATGGGCTGTTGT+AGG 0.437391 8.1:+82392667 MS.gene072181:CDS
ACAGGGTAGAGATGAGCATA+TGG 0.463184 8.1:+82392316 MS.gene072181:CDS
GAGATTAAGTACCATGGATA+AGG 0.469407 8.1:-82392476 None:intergenic
TGTAGAAGGTGCTCAATTTG+TGG 0.482816 8.1:-82392396 None:intergenic
AGGACTATCCAAATGAAGAT+TGG 0.484923 8.1:+82392439 MS.gene072181:CDS
CTACATCTCCCTCATTGAAA+AGG 0.497519 8.1:+82393681 MS.gene072181:CDS
AGGATGTTGAGAACTTGAAA+TGG 0.504789 8.1:+82393472 MS.gene072181:CDS
CACTTAACTGGCCTTATCCA+TGG 0.511389 8.1:+82392465 MS.gene072181:CDS
TGAACTTACCATAAAATGAA+TGG 0.516608 8.1:-82393298 None:intergenic
GGTTGTTAATGAGACAGAAC+TGG 0.517238 8.1:+82390974 MS.gene072181:CDS
AACAGCTGAAGCTATAAGAA+AGG 0.518742 8.1:+82392419 MS.gene072181:CDS
TGCTTACAAAATCAAAGGAT+TGG 0.521858 8.1:-82392114 None:intergenic
AGAAAATGAGAGAGGAGTAT+GGG 0.536046 8.1:+82392286 MS.gene072181:CDS
ACTTCCCTGCAAAGCTGAAG+TGG 0.537264 8.1:+82393828 MS.gene072181:CDS
AGTGAGAGTTGATGTTGAAA+AGG 0.538804 8.1:+82393648 MS.gene072181:CDS
GCTGAAAGTGAGAGGCAAGA+AGG 0.539626 8.1:+82392058 MS.gene072181:CDS
TTAACAATGTCATGATGTCA+TGG 0.550047 8.1:+82393111 MS.gene072181:CDS
AAGTGAGAGGCAAGAAGGAG+TGG 0.553115 8.1:+82392063 MS.gene072181:CDS
GGATGAGAGTGACCCTGACT+TGG 0.554579 8.1:+82392368 MS.gene072181:CDS
TAATGAGACAGAACTGGAGT+TGG 0.556666 8.1:+82390980 MS.gene072181:CDS
AATCAAAGGATTGGTAAATG+TGG 0.558930 8.1:-82392105 None:intergenic
TTTGTAGCTTTACATAGGGA+AGG 0.563583 8.1:+82393423 MS.gene072181:intron
ACAGGTGAAGAAAATGAGAG+AGG 0.565209 8.1:+82392278 MS.gene072181:intron
GATTACCTTGTGGTGGACAA+TGG 0.568396 8.1:-82392921 None:intergenic
TAACAATGTCATGATGTCAT+GGG 0.569057 8.1:+82393112 MS.gene072181:CDS
GTAGATGCTTACAAAATCAA+AGG 0.571608 8.1:-82392119 None:intergenic
CATCAAATCTGCAACCAACT+GGG 0.577918 8.1:-82392895 None:intergenic
CAGGGTAGAGATGAGCATAT+GGG 0.584187 8.1:+82392317 MS.gene072181:CDS
GGAATTTACTCTGAGAAATG+TGG 0.598713 8.1:+82393086 MS.gene072181:CDS
TTCACCACTTCAGCTTTGCA+GGG 0.603653 8.1:-82393832 None:intergenic
GAATAAGACTACTCTACCCT+CGG 0.603870 8.1:+82393253 MS.gene072181:CDS
AATAATCAGGTTGATCAATG+AGG 0.611524 8.1:-82390295 None:intergenic
TATGATGAACATAGCAGCCG+AGG 0.612512 8.1:-82393270 None:intergenic
TTTGTGGTTCATCCAAGTCA+GGG 0.617345 8.1:-82392380 None:intergenic
AAAAGTGTGACCAAATGAGT+TGG 0.621220 8.1:-82391027 None:intergenic
GTTGAATGATTACCTTGTGG+TGG 0.621848 8.1:-82392928 None:intergenic
ATCTGATGTTGAGTCAAAGA+CGG 0.628431 8.1:+82390950 MS.gene072181:CDS
GGAGTATGGGAAATTGAACA+GGG 0.629264 8.1:+82392299 MS.gene072181:CDS
ATTATGCTGCTGAAAGTGAG+AGG 0.640938 8.1:+82392050 MS.gene072181:CDS
TGAACTTCTGAATGAAGTGG+TGG 0.645478 8.1:+82392347 MS.gene072181:CDS
TAAACACTTGATGAATGATG+AGG 0.651355 8.1:+82393452 MS.gene072181:CDS
AACAATGTCATGATGTCATG+GGG 0.651705 8.1:+82393113 MS.gene072181:CDS
ATAGGTGACATATACCCAGT+TGG 0.653485 8.1:+82392881 MS.gene072181:intron
TGAATCCATTGTCCACCACA+AGG 0.657684 8.1:+82392916 MS.gene072181:CDS
ACAGAACTGGAGTTGGATGG+TGG 0.659727 8.1:+82390987 MS.gene072181:CDS
TGACCAAATGAGTTGGCTTG+TGG 0.660149 8.1:-82391020 None:intergenic
TTGTGAACTTCTGAATGAAG+TGG 0.665499 8.1:+82392344 MS.gene072181:CDS
GAGACAGAACTGGAGTTGGA+TGG 0.674706 8.1:+82390984 MS.gene072181:CDS
ATGATGAACATAGCAGCCGA+GGG 0.676043 8.1:-82393269 None:intergenic
TTACCTACAACAGCCCATTG+AGG 0.688120 8.1:-82392670 None:intergenic
TGATGTTGAGTCAAAGACGG+TGG 0.761342 8.1:+82390953 MS.gene072181:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATTCAGATAAAAT+TGG + chr8.1:82391249-82391268 MS.gene072181:intron 10.0%
!! TTACATTTATATAATATTAG+CGG + chr8.1:82392701-82392720 MS.gene072181:intron 10.0%
!!! TTTGTTTTCTATTAATTAAT+TGG + chr8.1:82390902-82390921 MS.gene072181:intron 10.0%
!! AAAAATAAATGAAAGATTTG+TGG - chr8.1:82392144-82392163 None:intergenic 15.0%
!! AATCAGATCTATAAAAAAAT+TGG + chr8.1:82390812-82390831 MS.gene072181:intron 15.0%
!! ATCAGATCTATAAAAAAATT+GGG + chr8.1:82390813-82390832 MS.gene072181:intron 15.0%
!! TAAAAATTACCAAAATAATC+AGG - chr8.1:82390311-82390330 None:intergenic 15.0%
!!! ATTTTGCTAAAAATAAAGAA+AGG - chr8.1:82390336-82390355 None:intergenic 15.0%
!!! GAACTTTTAATGTTAATTTT+TGG - chr8.1:82393348-82393367 None:intergenic 15.0%
!!! GAAGAAAGTTTTAAAAATTT+GGG + chr8.1:82393207-82393226 MS.gene072181:intron 15.0%
!!! TCACAAATTTCATTTTTTTT+TGG + chr8.1:82390374-82390393 MS.gene072181:intron 15.0%
!!! TGAAGAAAGTTTTAAAAATT+TGG + chr8.1:82393206-82393225 MS.gene072181:intron 15.0%
!!! TTAGAGAATATATTCATTTT+TGG - chr8.1:82391814-82391833 None:intergenic 15.0%
!!! TTTCATCCATATTTTTTAAA+CGG - chr8.1:82391465-82391484 None:intergenic 15.0%
!!! TTTTGCTAAAAATAAAGAAA+GGG - chr8.1:82390335-82390354 None:intergenic 15.0%
!! AAAAAAATGAAATTTGTGAG+AGG - chr8.1:82390373-82390392 None:intergenic 20.0%
!! AAAAAATGAAATTTGTGAGA+GGG - chr8.1:82390372-82390391 None:intergenic 20.0%
!! AAATTAAAATGTGAATCGTA+CGG - chr8.1:82390700-82390719 None:intergenic 20.0%
!! AATCATAGAGCAAAAATAAT+AGG - chr8.1:82391724-82391743 None:intergenic 20.0%
!! AATTGGTTATTAAACCAAAA+AGG - chr8.1:82392596-82392615 None:intergenic 20.0%
!! ACAAGTTCAAAAGTTAATTA+AGG + chr8.1:82391309-82391328 MS.gene072181:intron 20.0%
!! ACATTTCCGTTTAAAAAATA+TGG + chr8.1:82391456-82391475 MS.gene072181:intron 20.0%
!! ATATAATATTAGCGGAAAAA+CGG + chr8.1:82392709-82392728 MS.gene072181:intron 20.0%
!! ATCATAGAGCAAAAATAATA+GGG - chr8.1:82391723-82391742 None:intergenic 20.0%
!! ATGAACATTATAACATATAC+AGG + chr8.1:82392260-82392279 MS.gene072181:intron 20.0%
!! ATTGGTTATTAAACCAAAAA+GGG - chr8.1:82392595-82392614 None:intergenic 20.0%
!! CATGTAGAAAAAACAAATTA+TGG + chr8.1:82392973-82392992 MS.gene072181:intron 20.0%
!! GAATACTTGATTTATGAAAT+TGG + chr8.1:82390730-82390749 MS.gene072181:intron 20.0%
!! TAGTAAAAACTTAATACTCT+AGG - chr8.1:82393786-82393805 None:intergenic 20.0%
!! TTGGAAATGTAACATATATT+AGG - chr8.1:82393009-82393028 None:intergenic 20.0%
!!! AAAAAATGAAATTTTCTGAG+AGG - chr8.1:82390452-82390471 None:intergenic 20.0%
!!! AAAAATGAAATTTTCTGAGA+GGG - chr8.1:82390451-82390470 None:intergenic 20.0%
!!! ACATTGAATTGAATTTTGAA+AGG - chr8.1:82393167-82393186 None:intergenic 20.0%
!!! ACGCTTTTATATTGATATAT+CGG - chr8.1:82392746-82392765 None:intergenic 20.0%
!!! AGATAATATGGTGTTTTTTT+TGG + chr8.1:82391217-82391236 MS.gene072181:intron 20.0%
!!! ATAAGATACCATTCATTTTA+TGG + chr8.1:82393290-82393309 MS.gene072181:CDS 20.0%
!!! ATTTTTTTTTCTTCCCTTTT+TGG + chr8.1:82392579-82392598 MS.gene072181:intron 20.0%
!!! CATTCAACTTATTTTCTATT+TGG + chr8.1:82392943-82392962 MS.gene072181:intron 20.0%
!!! GAACTTTTTTATATCGAATT+TGG + chr8.1:82391182-82391201 MS.gene072181:intron 20.0%
!!! TTGAAACTTTTTTTGACAAA+AGG + chr8.1:82390841-82390860 MS.gene072181:intron 20.0%
!!! TTTATTTTTGATTTTGCCAT+AGG - chr8.1:82390501-82390520 None:intergenic 20.0%
!!! TTTTTTATATCGAATTTGGA+TGG + chr8.1:82391186-82391205 MS.gene072181:intron 20.0%
! AAAAAAGTTCTTATCCAGAT+CGG - chr8.1:82391172-82391191 None:intergenic 25.0%
! AAAAATGAAATTTGTGAGAG+GGG - chr8.1:82390371-82390390 None:intergenic 25.0%
! AACTATCAATAGGGTTATAT+TGG - chr8.1:82391545-82391564 None:intergenic 25.0%
! ACCTATACCAATATAGAAAA+TGG - chr8.1:82392867-82392886 None:intergenic 25.0%
! AGCTATTGTTAATCATAATC+AGG + chr8.1:82392026-82392045 MS.gene072181:intron 25.0%
! ATATGAGATTGTGAATTTGT+TGG + chr8.1:82390658-82390677 MS.gene072181:intron 25.0%
! ATGGATAGATCTAGATAATA+TGG + chr8.1:82391205-82391224 MS.gene072181:intron 25.0%
! CTAGCTGAAAAAAATTAACA+AGG + chr8.1:82393739-82393758 MS.gene072181:intron 25.0%
! GCATACACTTAAAAATATGT+AGG + chr8.1:82392218-82392237 MS.gene072181:intron 25.0%
! GCTATTGTTAATCATAATCA+GGG + chr8.1:82392027-82392046 MS.gene072181:intron 25.0%
! TCATAACCAATCAAATCAAA+TGG + chr8.1:82393366-82393385 MS.gene072181:intron 25.0%
! TGAACTTACCATAAAATGAA+TGG - chr8.1:82393301-82393320 None:intergenic 25.0%
! TTTCCTTAAAATACTGGAAT+TGG - chr8.1:82393028-82393047 None:intergenic 25.0%
!! ACCATTTTCTATATTGGTAT+AGG + chr8.1:82392863-82392882 MS.gene072181:intron 25.0%
!! ATTGATCAACCTGATTATTT+TGG + chr8.1:82390299-82390318 MS.gene072181:CDS 25.0%
!! TATGAGATTGTGAATTTGTT+GGG + chr8.1:82390659-82390678 MS.gene072181:intron 25.0%
!! TCTCTTACCATTTTCTATAT+TGG + chr8.1:82392857-82392876 MS.gene072181:intron 25.0%
!! TTATGCTAACTTGTACTTAA+AGG + chr8.1:82391285-82391304 MS.gene072181:intron 25.0%
!! TTTATATTGATATATCGGCT+CGG - chr8.1:82392741-82392760 None:intergenic 25.0%
!! TTTCCAATTCCAGTATTTTA+AGG + chr8.1:82393022-82393041 MS.gene072181:intron 25.0%
!! TTTTTGCTCTATGATTCTTT+AGG + chr8.1:82391728-82391747 MS.gene072181:intron 25.0%
!!! AAAATGAAATTTTCTGAGAG+GGG - chr8.1:82390450-82390469 None:intergenic 25.0%
!!! AAAATTTGGGTGTTGTTTTA+AGG + chr8.1:82393220-82393239 MS.gene072181:intron 25.0%
!!! AAAGTCTTTTAACTAACATG+TGG - chr8.1:82391985-82392004 None:intergenic 25.0%
!!! AATTGACCATTTGATTTGAT+TGG - chr8.1:82393375-82393394 None:intergenic 25.0%
!!! ATGTTTTTTTTTTGCTCCTA+TGG + chr8.1:82390482-82390501 MS.gene072181:intron 25.0%
!!! TGTATGTACATTTTTTCAGA+AGG - chr8.1:82392167-82392186 None:intergenic 25.0%
!!! TGTGCATAATCTGTATTTTT+TGG + chr8.1:82390613-82390632 MS.gene072181:intron 25.0%
!!! TTGTTTTGTAGCTTTACATA+GGG + chr8.1:82393419-82393438 MS.gene072181:intron 25.0%
!!! TTTGTTTTGTAGCTTTACAT+AGG + chr8.1:82393418-82393437 MS.gene072181:intron 25.0%
!!! TTTTTTTCAGCTAGAAACAA+AGG - chr8.1:82393733-82393752 None:intergenic 25.0%
AAAGTAGAGATTAAGTACCA+TGG - chr8.1:82392485-82392504 None:intergenic 30.0%
AATACTCTAGGCAAAAACTA+GGG - chr8.1:82393774-82393793 None:intergenic 30.0%
AGGAAATAAAAGCTTTCTTG+AGG - chr8.1:82393713-82393732 None:intergenic 30.0%
AGTTACAATCAAAGGGAAAA+TGG - chr8.1:82390593-82390612 None:intergenic 30.0%
ATGCACAAGTTACAATCAAA+GGG - chr8.1:82390600-82390619 None:intergenic 30.0%
ATTTGAATCAATGCAGATCT+TGG + chr8.1:82392613-82392632 MS.gene072181:intron 30.0%
CAAGAATCACGAAATTAACT+GGG - chr8.1:82390792-82390811 None:intergenic 30.0%
CAGTAGTTTCAATCGAATTT+GGG + chr8.1:82391594-82391613 MS.gene072181:intron 30.0%
CGGTTAAAGTTAAAATCCAT+CGG - chr8.1:82391573-82391592 None:intergenic 30.0%
GTAGATGCTTACAAAATCAA+AGG - chr8.1:82392122-82392141 None:intergenic 30.0%
TAAACACTTGATGAATGATG+AGG + chr8.1:82393452-82393471 MS.gene072181:CDS 30.0%
TAACAATGTCATGATGTCAT+GGG + chr8.1:82393112-82393131 MS.gene072181:CDS 30.0%
TAATACTCTAGGCAAAAACT+AGG - chr8.1:82393775-82393794 None:intergenic 30.0%
TATGCACAAGTTACAATCAA+AGG - chr8.1:82390601-82390620 None:intergenic 30.0%
TCAAGAATCACGAAATTAAC+TGG - chr8.1:82390793-82390812 None:intergenic 30.0%
TGCTTACAAAATCAAAGGAT+TGG - chr8.1:82392117-82392136 None:intergenic 30.0%
TTAAAGTTAAAATCCATCGG+CGG - chr8.1:82391570-82391589 None:intergenic 30.0%
TTAACAATGTCATGATGTCA+TGG + chr8.1:82393111-82393130 MS.gene072181:CDS 30.0%
! AATCAAAGGATTGGTAAATG+TGG - chr8.1:82392108-82392127 None:intergenic 30.0%
! CTGGATTTTCCTTAAAATAC+TGG - chr8.1:82393034-82393053 None:intergenic 30.0%
! GGATTAAACTTGTCATTTCA+CGG + chr8.1:82391615-82391634 MS.gene072181:intron 30.0%
! TAAGTTGAATGATTACCTTG+TGG - chr8.1:82392934-82392953 None:intergenic 30.0%
!! AATAATCAGGTTGATCAATG+AGG - chr8.1:82390298-82390317 None:intergenic 30.0%
!! AGATCTGCATTGATTCAAAT+TGG - chr8.1:82392613-82392632 None:intergenic 30.0%
!! GGGTTATATTGGTAATTTTG+TGG - chr8.1:82391534-82391553 None:intergenic 30.0%
!!! CGATGGATTTTAACTTTAAC+CGG + chr8.1:82391571-82391590 MS.gene072181:intron 30.0%
!!! GTATTTTTTGGTCTCGATAA+TGG + chr8.1:82390625-82390644 MS.gene072181:intron 30.0%
AACAATGTCATGATGTCATG+GGG + chr8.1:82393113-82393132 MS.gene072181:CDS 35.0%
AACAGCTGAAGCTATAAGAA+AGG + chr8.1:82392419-82392438 MS.gene072181:CDS 35.0%
AAGAAAATGAGAGAGGAGTA+TGG + chr8.1:82392285-82392304 MS.gene072181:CDS 35.0%
AATAGAGGAAAAGGCTCAAT+GGG - chr8.1:82391759-82391778 None:intergenic 35.0%
AATTCGATTGAAACTACTGC+CGG - chr8.1:82391593-82391612 None:intergenic 35.0%
ACCAAGTAGTACTAACATGT+GGG - chr8.1:82391848-82391867 None:intergenic 35.0%
AGGACTATCCAAATGAAGAT+TGG + chr8.1:82392439-82392458 MS.gene072181:CDS 35.0%
AGGATGTTGAGAACTTGAAA+TGG + chr8.1:82393472-82393491 MS.gene072181:CDS 35.0%
ATACTCTAGGCAAAAACTAG+GGG - chr8.1:82393773-82393792 None:intergenic 35.0%
ATCTGATGTTGAGTCAAAGA+CGG + chr8.1:82390950-82390969 MS.gene072181:CDS 35.0%
CCAGATCGGTATATTCAAAT+GGG - chr8.1:82391158-82391177 None:intergenic 35.0%
GAGATTAAGTACCATGGATA+AGG - chr8.1:82392479-82392498 None:intergenic 35.0%
GCAGTAGTTTCAATCGAATT+TGG + chr8.1:82391593-82391612 MS.gene072181:intron 35.0%
GTTAGTACTACTTGGTATGT+TGG + chr8.1:82391852-82391871 MS.gene072181:intron 35.0%
GTTGGTACTACTTGATATGT+TGG + chr8.1:82391870-82391889 MS.gene072181:intron 35.0%
TAATAGAGGAAAAGGCTCAA+TGG - chr8.1:82391760-82391779 None:intergenic 35.0%
TACCAAGTAGTACTAACATG+TGG - chr8.1:82391849-82391868 None:intergenic 35.0%
TATGCAGAGTTGTTATAGTC+TGG - chr8.1:82393053-82393072 None:intergenic 35.0%
TCCAGATCGGTATATTCAAA+TGG - chr8.1:82391159-82391178 None:intergenic 35.0%
TCTGCATACAACACTAGATA+TGG + chr8.1:82393065-82393084 MS.gene072181:CDS 35.0%
TTGTGAACTTCTGAATGAAG+TGG + chr8.1:82392344-82392363 MS.gene072181:CDS 35.0%
TTGTGATCCACAGTAGAATT+AGG - chr8.1:82391917-82391936 None:intergenic 35.0%
! AAAAGTGTGACCAAATGAGT+TGG - chr8.1:82391030-82391049 None:intergenic 35.0%
! ACTCATTTGGTCACACTTTT+AGG + chr8.1:82391030-82391049 MS.gene072181:CDS 35.0%
! AGAAAATGAGAGAGGAGTAT+GGG + chr8.1:82392286-82392305 MS.gene072181:CDS 35.0%
! ATTGAGCCTTTTCCTCTATT+AGG + chr8.1:82391759-82391778 MS.gene072181:intron 35.0%
! GGAATTTACTCTGAGAAATG+TGG + chr8.1:82393086-82393105 MS.gene072181:CDS 35.0%
! TTTGTAGCTTTACATAGGGA+AGG + chr8.1:82393423-82393442 MS.gene072181:intron 35.0%
!! AGTGAGAGTTGATGTTGAAA+AGG + chr8.1:82393648-82393667 MS.gene072181:CDS 35.0%
!!! ATTTGGGTGTTGTTTTAAGG+TGG + chr8.1:82393223-82393242 MS.gene072181:intron 35.0%
AAGTGCAGCCAATCTTCATT+TGG - chr8.1:82392450-82392469 None:intergenic 40.0%
ACAGGTGAAGAAAATGAGAG+AGG + chr8.1:82392278-82392297 MS.gene072181:intron 40.0%
AGACACACTTCAACACTAGT+GGG - chr8.1:82391787-82391806 None:intergenic 40.0%
ATAGGTGACATATACCCAGT+TGG + chr8.1:82392881-82392900 MS.gene072181:intron 40.0%
ATCGGCGGTTAACTATCAAT+AGG - chr8.1:82391555-82391574 None:intergenic 40.0%
ATTATGCTGCTGAAAGTGAG+AGG + chr8.1:82392050-82392069 MS.gene072181:CDS 40.0%
ATTTGTGGTTCATCCAAGTC+AGG - chr8.1:82392384-82392403 None:intergenic 40.0%
CATCAAATCTGCAACCAACT+GGG - chr8.1:82392898-82392917 None:intergenic 40.0%
CCCATTTGAATATACCGATC+TGG + chr8.1:82391155-82391174 MS.gene072181:intron 40.0%
CTACATCTCCCTCATTGAAA+AGG + chr8.1:82393681-82393700 MS.gene072181:CDS 40.0%
GAATAAGACTACTCTACCCT+CGG + chr8.1:82393253-82393272 MS.gene072181:CDS 40.0%
GCCTGATTGACACAGTAAAT+GGG - chr8.1:82391701-82391720 None:intergenic 40.0%
GGAGTATGGGAAATTGAACA+GGG + chr8.1:82392299-82392318 MS.gene072181:CDS 40.0%
GGTTGTTAATGAGACAGAAC+TGG + chr8.1:82390974-82390993 MS.gene072181:CDS 40.0%
GTTGAATGATTACCTTGTGG+TGG - chr8.1:82392931-82392950 None:intergenic 40.0%
TAATGAGACAGAACTGGAGT+TGG + chr8.1:82390980-82390999 MS.gene072181:CDS 40.0%
TAGCTTCAGCTGTTTGTAGA+AGG - chr8.1:82392413-82392432 None:intergenic 40.0%
TCAATGAGGGAGATGTAGTA+TGG - chr8.1:82393679-82393698 None:intergenic 40.0%
TCACTTGCCTAATTCTACTG+TGG + chr8.1:82391907-82391926 MS.gene072181:intron 40.0%
TCATCAAATCTGCAACCAAC+TGG - chr8.1:82392899-82392918 None:intergenic 40.0%
TCCCACATGTTAGTACTACT+TGG + chr8.1:82391844-82391863 MS.gene072181:intron 40.0%
TCCCATTTACTGTGTCAATC+AGG + chr8.1:82391697-82391716 MS.gene072181:intron 40.0%
TCGGCGGTTAACTATCAATA+GGG - chr8.1:82391554-82391573 None:intergenic 40.0%
TGAACTTCTGAATGAAGTGG+TGG + chr8.1:82392347-82392366 MS.gene072181:CDS 40.0%
TGATTGACACAGTAAATGGG+AGG - chr8.1:82391698-82391717 None:intergenic 40.0%
TTTGTGGTTCATCCAAGTCA+GGG - chr8.1:82392383-82392402 None:intergenic 40.0%
! AGGAGTATGGGAAATTGAAC+AGG + chr8.1:82392298-82392317 MS.gene072181:CDS 40.0%
! AGGTGCTTACCTTTTCAATG+AGG - chr8.1:82393693-82393712 None:intergenic 40.0%
! GGTGCTTACCTTTTCAATGA+GGG - chr8.1:82393692-82393711 None:intergenic 40.0%
! TATTGATAGTTAACCGCCGA+TGG + chr8.1:82391554-82391573 MS.gene072181:intron 40.0%
!! TGCTTCTCCTTCCTAGTTTT+GGG + chr8.1:82392641-82392660 MS.gene072181:CDS 40.0%
!! TGTAGAAGGTGCTCAATTTG+TGG - chr8.1:82392399-82392418 None:intergenic 40.0%
!!! GTGTTGTTTTAAGGTGGCAA+AGG + chr8.1:82393229-82393248 MS.gene072181:intron 40.0%
ACAGGGTAGAGATGAGCATA+TGG + chr8.1:82392316-82392335 MS.gene072181:CDS 45.0%
ATGATGAACATAGCAGCCGA+GGG - chr8.1:82393272-82393291 None:intergenic 45.0%
ATGCCACAAGCCAACTCATT+TGG + chr8.1:82391017-82391036 MS.gene072181:CDS 45.0%
CAGGGTAGAGATGAGCATAT+GGG + chr8.1:82392317-82392336 MS.gene072181:CDS 45.0%
GACACACTTCAACACTAGTG+GGG - chr8.1:82391786-82391805 None:intergenic 45.0%
GAGACACACTTCAACACTAG+TGG - chr8.1:82391788-82391807 None:intergenic 45.0%
GCTCTATGATTCTTTAGGCC+AGG + chr8.1:82391733-82391752 MS.gene072181:intron 45.0%
GGCCTGATTGACACAGTAAA+TGG - chr8.1:82391702-82391721 None:intergenic 45.0%
TATGATGAACATAGCAGCCG+AGG - chr8.1:82393273-82393292 None:intergenic 45.0%
TGAATCCATTGTCCACCACA+AGG + chr8.1:82392916-82392935 MS.gene072181:CDS 45.0%
TGATGTTGAGTCAAAGACGG+TGG + chr8.1:82390953-82390972 MS.gene072181:CDS 45.0%
TGGGGTCCTAATAGAGGAAA+AGG - chr8.1:82391768-82391787 None:intergenic 45.0%
TTACCTACAACAGCCCATTG+AGG - chr8.1:82392673-82392692 None:intergenic 45.0%
! GAAGATTGGCTGCACTTAAC+TGG + chr8.1:82392453-82392472 MS.gene072181:CDS 45.0%
! GTGCTTCTCCTTCCTAGTTT+TGG + chr8.1:82392640-82392659 MS.gene072181:CDS 45.0%
!! CACTTAACTGGCCTTATCCA+TGG + chr8.1:82392465-82392484 MS.gene072181:CDS 45.0%
!! GATTACCTTGTGGTGGACAA+TGG - chr8.1:82392924-82392943 None:intergenic 45.0%
!! TGACCAAATGAGTTGGCTTG+TGG - chr8.1:82391023-82391042 None:intergenic 45.0%
!! TTTTGGGGGACTTCCTCAAT+GGG + chr8.1:82392657-82392676 MS.gene072181:CDS 45.0%
!!! CTTCTCCTTCCTAGTTTTGG+GGG + chr8.1:82392643-82392662 MS.gene072181:CDS 45.0%
!!! GCTTCTCCTTCCTAGTTTTG+GGG + chr8.1:82392642-82392661 MS.gene072181:CDS 45.0%
!! TATTATTATAAAATTATTAC+AGG + chr8.1:82390927-82390946 MS.gene072181:intron 5.0%
AAGTGAGAGGCAAGAAGGAG+TGG + chr8.1:82392063-82392082 MS.gene072181:CDS 50.0%
ACAGAACTGGAGTTGGATGG+TGG + chr8.1:82390987-82391006 MS.gene072181:CDS 50.0%
ACTTCCCTGCAAAGCTGAAG+TGG + chr8.1:82393828-82393847 MS.gene072181:CDS 50.0%
CACTAGTGGGGTCCTAATAG+AGG - chr8.1:82391774-82391793 None:intergenic 50.0%
GAAGTCCCCCAAAACTAGGA+AGG - chr8.1:82392651-82392670 None:intergenic 50.0%
GAGACAGAACTGGAGTTGGA+TGG + chr8.1:82390984-82391003 MS.gene072181:CDS 50.0%
GCTGAAAGTGAGAGGCAAGA+AGG + chr8.1:82392058-82392077 MS.gene072181:CDS 50.0%
TGAGGAAGTCCCCCAAAACT+AGG - chr8.1:82392655-82392674 None:intergenic 50.0%
!! CTTCCTCAATGGGCTGTTGT+AGG + chr8.1:82392667-82392686 MS.gene072181:CDS 50.0%
!!! GTTTTGGGGGACTTCCTCAA+TGG + chr8.1:82392656-82392675 MS.gene072181:CDS 50.0%
AGGAAAAGGCTCAATGGGCC+TGG - chr8.1:82391754-82391773 None:intergenic 55.0%
GGATGAGAGTGACCCTGACT+TGG + chr8.1:82392368-82392387 MS.gene072181:CDS 55.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 82390287 82393853 82390287 ID=MS.gene072181
chr8.1 mRNA 82390287 82393853 82390287 ID=MS.gene072181.t1;Parent=MS.gene072181
chr8.1 exon 82390287 82390320 82390287 ID=MS.gene072181.t1.exon1;Parent=MS.gene072181.t1
chr8.1 CDS 82390287 82390320 82390287 ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1
chr8.1 exon 82390949 82391051 82390949 ID=MS.gene072181.t1.exon2;Parent=MS.gene072181.t1
chr8.1 CDS 82390949 82391051 82390949 ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1
chr8.1 exon 82392048 82392129 82392048 ID=MS.gene072181.t1.exon3;Parent=MS.gene072181.t1
chr8.1 CDS 82392048 82392129 82392048 ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1
chr8.1 exon 82392282 82392486 82392282 ID=MS.gene072181.t1.exon4;Parent=MS.gene072181.t1
chr8.1 CDS 82392282 82392486 82392282 ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1
chr8.1 exon 82392629 82392688 82392629 ID=MS.gene072181.t1.exon5;Parent=MS.gene072181.t1
chr8.1 CDS 82392629 82392688 82392629 ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1
chr8.1 exon 82392885 82392937 82392885 ID=MS.gene072181.t1.exon6;Parent=MS.gene072181.t1
chr8.1 CDS 82392885 82392937 82392885 ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1
chr8.1 exon 82393035 82393157 82393035 ID=MS.gene072181.t1.exon7;Parent=MS.gene072181.t1
chr8.1 CDS 82393035 82393157 82393035 ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1
chr8.1 exon 82393242 82393311 82393242 ID=MS.gene072181.t1.exon8;Parent=MS.gene072181.t1
chr8.1 CDS 82393242 82393311 82393242 ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1
chr8.1 exon 82393430 82393508 82393430 ID=MS.gene072181.t1.exon9;Parent=MS.gene072181.t1
chr8.1 CDS 82393430 82393508 82393430 ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1
chr8.1 exon 82393621 82393702 82393621 ID=MS.gene072181.t1.exon10;Parent=MS.gene072181.t1
chr8.1 CDS 82393621 82393702 82393621 ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1
chr8.1 exon 82393827 82393853 82393827 ID=MS.gene072181.t1.exon11;Parent=MS.gene072181.t1
chr8.1 CDS 82393827 82393853 82393827 ID=cds.MS.gene072181.t1;Parent=MS.gene072181.t1
Gene Sequence

>MS.gene072181

ATGACTATCCTCATTGATCAACCTGATTATTTTGGTAATTTTTAACCCTTTCTTTATTTTTAGCAAAATTCAATTTAATTTCCCCTCTCACAAATTTCATTTTTTTTTGGCAAAATTTATGTTTTTTTTTTAATTTTATTTTAAAGAAAAATTTATTTTTCCCCTCTCAGAAAATTTCATTTTTTAGTTCAGTATATGTTTTTTTTTTGCTCCTATGGCAAAATCAAAAATAAAAAATAGTTTTCTATCTTTTAATTTTTCTTTTAAAAAGTTTGATAATTTTTTTTCTCTCATGATTTTGTACCATTTTCCCTTTGATTGTAACTTGTGCATAATCTGTATTTTTTGGTCTCGATAATGGATCTAGATTTATATGAGATTGTGAATTTGTTGGGTCAAACAAATCTAAACCGTACGATTCACATTTTAATTTTTGTAATTATGAATACTTGATTTATGAAATTGGATCATGAGCAGTTTGATTAAAGTTTGACTTGATTGACCCAGTTAATTTCGTGATTCTTGAATCAGATCTATAAAAAAATTGGGTTGATTTGAAACTTTTTTTGACAAAAGGTTGATTTGAAATTTTAAAATGTGCACAAAATTGTGTATTTTGTTTTCTATTAATTAATTGGTTTATTATTATAAAATTATTACAGGATCTGATGTTGAGTCAAAGACGGTGGTTGTTAATGAGACAGAACTGGAGTTGGATGGTGGATTTGTTATGCCACAAGCCAACTCATTTGGTCACACTTTTAGGTTCAATTCTTCATATAACTTTTTTTTTGAATAATTCTTCATATAACTTATGCACTCTTTACTGCTTGTTAATTATTATTATTACATGCTGTAAAAAAATTAACCCATTTGAATATACCGATCTGGATAAGAACTTTTTTATATCGAATTTGGATGGATAGATCTAGATAATATGGTGTTTTTTTTGGCTATTGAGATAAATAAATTCAGATAAAATTGGTTTTAAAAATAGATTATGCTAACTTGTACTTAAAGGTACAAGTTCAAAAGTTAATTAAGGAATTAAAAAATAAATTTCTGTATTAAATAAATTGCATTTTTAAGTTTTTAAGATTATGATTACACAATTTTTAAAATTTTACTATTTATATTTGATTTTTTAAGTATCTTTAGAATACAAGTTAACATTTCCGTTTAAAAAATATGGATGAAAGAAGTTTGAAAATTGATGTTCTCACATCAAATGTTGCTATGAAACACCACAAAATTACCAATATAACCCTATTGATAGTTAACCGCCGATGGATTTTAACTTTAACCGGCAGTAGTTTCAATCGAATTTGGGATTAAACTTGTCATTTCACGGTGTTTCTTAGCATTATGTGAAGTGTGAAAAACAATTTTCAATAAGTTTTCTACAATTCCTCCCATTTACTGTGTCAATCAGGCCCTATTATTTTTGCTCTATGATTCTTTAGGCCAGGCCCATTGAGCCTTTTCCTCTATTAGGACCCCACTAGTGTTGAAGTGTGTCTCATTCCAAAAATGAATATATTCTCTAATTCTTCATTTTCCCACATGTTAGTACTACTTGGTATGTTGGTACTACTTGATATGTTGGTACTATTTGCTATTTCACTTGCCTAATTCTACTGTGGATCACAAACTATGAAAAGTAAAAATGAATATATTCTCTAATTCTTCATTTTTCCACATGTTAGTTAAAAGACTTTAAGAATTATCTTACATTGATAAGCTATTGTTAATCATAATCAGGGATTATGCTGCTGAAAGTGAGAGGCAAGAAGGAGTGGAGAACTTCTACAAAAAAAACCACATTTACCAATCCTTTGATTTTGTAAGCATCTACCACAAATCTTTCATTTATTTTTCCTTCTGAAAAAATGTACATACAACACATTTGTCACAATTTGCGCTAGCAATTAGCATACACTTAAAAATATGTAGGTATGAAAAATGATATTAATATGAACATTATAACATATACAGGTGAAGAAAATGAGAGAGGAGTATGGGAAATTGAACAGGGTAGAGATGAGCATATGGGAATGTTGTGAACTTCTGAATGAAGTGGTGGATGAGAGTGACCCTGACTTGGATGAACCACAAATTGAGCACCTTCTACAAACAGCTGAAGCTATAAGAAAGGACTATCCAAATGAAGATTGGCTGCACTTAACTGGCCTTATCCATGGTACTTAATCTCTACTTTCTTAGTTAATTACTACATTATGACTTCATTACATAAAAGATATATTTTTTCATGTGCTTGAAATTTAGCATGCTATTTTTTTTTCTTCCCTTTTTGGTTTAATAACCAATTTGAATCAATGCAGATCTTGGCAAAGTGCTTCTCCTTCCTAGTTTTGGGGGACTTCCTCAATGGGCTGTTGTAGGTAAGTGAGATGTTACATTTATATAATATTAGCGGAAAAACGGACACTACCGAGCCGATATATCAATATAAAAGCGTGTTTTATTTTATTTATAGTTTATACTATAGTTTATAGCTAATATATACATAACTTATAATATTTGTCAAATATTTTTAGTTGAAAGTGTGATCTCTTACCATTTTCTATATTGGTATAGGTGACATATACCCAGTTGGTTGCAGATTTGATGAATCCATTGTCCACCACAAGGTAATCATTCAACTTATTTTCTATTTGGATGTAGTCATGTAGAAAAAACAAATTATGGAAATTAAACACCTAATATATGTTACATTTCCAATTCCAGTATTTTAAGGAAAATCCAGACTATAACAACTCTGCATACAACACTAGATATGGAATTTACTCTGAGAAATGTGGACTTAACAATGTCATGATGTCATGGGGACATGATGACTACATGTATCTAGTAAGTCCTTTCAAAATTCAATTCAATGTTATTATTTCATAAAAATAGTGAAGAAAGTTTTAAAAATTTGGGTGTTGTTTTAAGGTGGCAAAGGAGAATAAGACTACTCTACCCTCGGCTGCTATGTTCATCATAAGATACCATTCATTTTATGGTAAGTTCAACTTAGAAGTAAAAATTTTATTGTCCAAAAATTAACATTAAAAGTTCATAACCAATCAAATCAAATGGTCAATTTGTAATTTTATTTGACACAAAAATTTGTTTTGTAGCTTTACATAGGGAAGGAGCTTATAAACACTTGATGAATGATGAGGATGTTGAGAACTTGAAATGGCTTCACATTTTCAAGTAATATTACATGATTATTATTATTTCTTAATTTTTATCAAGTATGCAAATAGAAAGATTAATTAATGTTTTCTCTAACTTTAAACTTCTTCTACATTTCAATCAATTGTAGCAAATATGATCTCTACAGCAAGAGCAAAGTGAGAGTTGATGTTGAAAAGGTGAAACCATACTACATCTCCCTCATTGAAAAGGTAAGCACCTCAAGAAAGCTTTTATTTCCTTTGTTTCTAGCTGAAAAAAATTAACAAGGTTGATTTTCCCCTAGTTTTTGCCTAGAGTATTAAGTTTTTACTAATGCATCTTTATTTGCTACAGTACTTCCCTGCAAAGCTGAAGTGGTGA

Protein sequence

>MS.gene072181.t1

MTILIDQPDYFGSDVESKTVVVNETELELDGGFVMPQANSFGHTFRDYAAESERQEGVENFYKKNHIYQSFDFVKKMREEYGKLNRVEMSIWECCELLNEVVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLLPSFGGLPQWAVVGDIYPVGCRFDESIVHHKYFKENPDYNNSAYNTRYGIYSEKCGLNNVMMSWGHDDYMYLVAKENKTTLPSAAMFIIRYHSFYALHREGAYKHLMNDEDVENLKWLHIFNKYDLYSKSKVRVDVEKVKPYYISLIEKYFPAKLKW