AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36707


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36707.t1 MTR_8g015220 97.705 305 7 0 1 305 1 305 0.0 622
MS.gene36707.t1 MTR_8g015220 97.398 269 7 0 1 269 1 269 0.0 551
MS.gene36707.t1 MTR_8g102150 72.871 317 73 3 1 305 1 316 2.47e-172 480
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36707.t1 AT1G14520 77.023 309 67 2 1 305 1 309 3.08e-179 497
MS.gene36707.t1 AT1G14520 76.282 312 66 2 1 305 1 311 1.72e-178 495
MS.gene36707.t1 AT1G14520 76.282 312 66 2 1 305 1 311 1.72e-178 495
MS.gene36707.t1 AT1G14520 75.987 304 65 2 1 297 1 303 5.51e-171 477
MS.gene36707.t1 AT2G19800 71.698 318 76 4 1 305 1 317 8.34e-169 471
MS.gene36707.t1 AT4G26260 75.338 296 60 1 23 305 22 317 1.52e-168 470
MS.gene36707.t1 AT4G26260 75.338 296 60 1 23 305 23 318 2.05e-168 470
MS.gene36707.t1 AT5G56640 75.090 277 68 1 30 305 38 314 7.25e-161 451
MS.gene36707.t1 AT5G56640 75.090 277 68 1 30 305 8 284 1.18e-160 449

Find 65 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGATCAACATGATTATTT+TGG 0.174005 8.2:+78121216 MS.gene36707:CDS
GTGCTTCTCCTTCCTAGTTT+TGG 0.177602 8.2:+78123639 MS.gene36707:CDS
AAGAAAATGAGAGAGGAATA+TGG 0.276757 8.2:+78123284 MS.gene36707:CDS
TTTCACCACTTCAGCTTTGC+AGG 0.279549 8.2:-78124834 None:intergenic
ATGCCACAGGCCAACTCATT+TGG 0.285670 8.2:+78121889 MS.gene36707:CDS
GAAGATTGGCTGCACTTAAC+TGG 0.338706 8.2:+78123452 MS.gene36707:CDS
TCTGCATACAACACTAGATA+TGG 0.369151 8.2:+78124061 MS.gene36707:CDS
TCATCAAATCTGCAACCAAC+TGG 0.370493 8.2:-78123892 None:intergenic
TAGCTTCAGCTGTTTGTAGA+AGG 0.371351 8.2:-78123409 None:intergenic
TCAATGAGGGAGATGTAGTA+TGG 0.376465 8.2:-78124672 None:intergenic
AGGAATATGGGAAATTGAAC+AGG 0.376983 8.2:+78123297 MS.gene36707:CDS
TATGCAGAGTTGTTATAGTC+TGG 0.382673 8.2:-78124046 None:intergenic
ATTTGTGGTTCATCCAAGTC+AGG 0.391673 8.2:-78123380 None:intergenic
TGCCACAGGCCAACTCATTT+GGG 0.406137 8.2:+78121890 MS.gene36707:CDS
AAGTGCAGCCAATCTTCATT+TGG 0.432228 8.2:-78123446 None:intergenic
CTTCCTCAATGGGCTGTTGT+AGG 0.437391 8.2:+78123666 MS.gene36707:CDS
ACAGGGTAGAGATGAGCATA+TGG 0.463184 8.2:+78123315 MS.gene36707:CDS
TGTAGAAGGTGCTCTATTTG+TGG 0.464658 8.2:-78123395 None:intergenic
GAGATTAAGTACCATGGATA+AGG 0.469407 8.2:-78123475 None:intergenic
AGTGAGAGTTGATGTTGAAA+AGG 0.472339 8.2:+78124644 MS.gene36707:CDS
AGGACTATCCAAATGAAGAT+TGG 0.484923 8.2:+78123438 MS.gene36707:CDS
AGAAAATGAGAGAGGAATAT+GGG 0.491901 8.2:+78123285 MS.gene36707:CDS
CTACATCTCCCTCATTGAAA+AGG 0.497519 8.2:+78124677 MS.gene36707:CDS
AGGATGTTGAGAACTTGAAA+TGG 0.504789 8.2:+78124468 MS.gene36707:CDS
CACTTAACTGGCCTTATCCA+TGG 0.511389 8.2:+78123464 MS.gene36707:CDS
TGAACTTACCATAAAATGAA+TGG 0.516608 8.2:-78124294 None:intergenic
GGTTGTTAATGAGACAGAAC+TGG 0.517238 8.2:+78121846 MS.gene36707:CDS
AACAGCTGAAGCTATAAGAA+AGG 0.518742 8.2:+78123418 MS.gene36707:CDS
TGCTTACAAAATCAAAGGAT+TGG 0.521858 8.2:-78123113 None:intergenic
ACTTCCCTGCAAAGCTGAAG+TGG 0.537264 8.2:+78124829 MS.gene36707:CDS
GCTGAAAGTGAGAGGCAAGA+AGG 0.539626 8.2:+78123057 MS.gene36707:CDS
TTAACAATGTCATGATGTCA+TGG 0.550047 8.2:+78124107 MS.gene36707:CDS
AAGTGAGAGGCAAGAAGGAG+TGG 0.553115 8.2:+78123062 MS.gene36707:CDS
GGATGAGAGTGACCCTGACT+TGG 0.554579 8.2:+78123367 MS.gene36707:CDS
TGGTGGATTTGTTATGCCAC+AGG 0.555652 8.2:+78121876 MS.gene36707:CDS
TAATGAGACAGAACTGGAGT+TGG 0.556666 8.2:+78121852 MS.gene36707:CDS
TTTGTAGCTTTACATAGGGA+AGG 0.563583 8.2:+78124419 MS.gene36707:intron
GATTACCTTGTGGTGGACAA+TGG 0.568396 8.2:-78123917 None:intergenic
TAACAATGTCATGATGTCAT+GGG 0.569057 8.2:+78124108 MS.gene36707:CDS
GTAGATGCTTACAAAATCAA+AGG 0.571608 8.2:-78123118 None:intergenic
ACAGGTGAAGAAAATGAGAG+AGG 0.577648 8.2:+78123277 MS.gene36707:intron
AAAAGTGTGCCCAAATGAGT+TGG 0.577893 8.2:-78121899 None:intergenic
CATCAAATCTGCAACCAACT+GGG 0.577918 8.2:-78123891 None:intergenic
CAGGGTAGAGATGAGCATAT+GGG 0.584187 8.2:+78123316 MS.gene36707:CDS
GGAATTTACTCTGAGAAATG+TGG 0.598713 8.2:+78124082 MS.gene36707:CDS
TTCACCACTTCAGCTTTGCA+GGG 0.603653 8.2:-78124833 None:intergenic
GAATAAGACTACTCTACCCT+CGG 0.603870 8.2:+78124249 MS.gene36707:CDS
TATGATGAACATAGCAGCCG+AGG 0.612512 8.2:-78124266 None:intergenic
TTTGTGGTTCATCCAAGTCA+GGG 0.614647 8.2:-78123379 None:intergenic
GTTGAATGATTACCTTGTGG+TGG 0.621848 8.2:-78123924 None:intergenic
ATCTGATGTTGAGTCAAAGA+CGG 0.628431 8.2:+78121822 MS.gene36707:CDS
ATTATGCTGCTGAAAGTGAG+AGG 0.640938 8.2:+78123049 MS.gene36707:CDS
TGAACTTCTGAATGAAGTGG+TGG 0.645478 8.2:+78123346 MS.gene36707:CDS
TAAACACTTGATGAATGATG+AGG 0.651355 8.2:+78124448 MS.gene36707:CDS
AACAATGTCATGATGTCATG+GGG 0.651705 8.2:+78124109 MS.gene36707:CDS
ATAGGTGACATATACCCAGT+TGG 0.653485 8.2:+78123877 MS.gene36707:intron
TGAATCCATTGTCCACCACA+AGG 0.657684 8.2:+78123912 MS.gene36707:CDS
ACAGAACTGGAGTTGGATGG+TGG 0.659727 8.2:+78121859 MS.gene36707:CDS
TTGTGAACTTCTGAATGAAG+TGG 0.665499 8.2:+78123343 MS.gene36707:CDS
TGCCCAAATGAGTTGGCCTG+TGG 0.666895 8.2:-78121892 None:intergenic
GGAATATGGGAAATTGAACA+GGG 0.669328 8.2:+78123298 MS.gene36707:CDS
GAGACAGAACTGGAGTTGGA+TGG 0.674706 8.2:+78121856 MS.gene36707:CDS
ATGATGAACATAGCAGCCGA+GGG 0.676043 8.2:-78124265 None:intergenic
TTACCTACAACAGCCCATTG+AGG 0.688120 8.2:-78123669 None:intergenic
TGATGTTGAGTCAAAGACGG+TGG 0.761342 8.2:+78121825 MS.gene36707:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAGGAAATAAA+AGG - chr8.2:78124719-78124738 None:intergenic 10.0%
!! AAAAAAAAAATAGAGTTTAA+TGG + chr8.2:78122071-78122090 MS.gene36707:intron 10.0%
!! AAAAAAAAATTAGAGTTTAA+TGG + chr8.2:78121979-78121998 MS.gene36707:intron 10.0%
!! TAAATAAATTCAGATAAAAT+TGG + chr8.2:78122281-78122300 MS.gene36707:intron 10.0%
!! TTACATTTATATAATATTAG+CGG + chr8.2:78123700-78123719 MS.gene36707:intron 10.0%
!!! TTTCAAACATATTTTTTAAA+CGG - chr8.2:78122499-78122518 None:intergenic 10.0%
!!! TTTGTTTTCTATTAATTAAT+TGG + chr8.2:78121771-78121790 MS.gene36707:intron 10.0%
!! AAAAATAAATGAAAGATTTG+TGG - chr8.2:78123143-78123162 None:intergenic 15.0%
!! ACAAGTTAAAAAGTTAATTA+AGG + chr8.2:78122344-78122363 MS.gene36707:intron 15.0%
!! ATACATAAGTTACAATTAAA+GGG - chr8.2:78121487-78121506 None:intergenic 15.0%
!! TATACATAAGTTACAATTAA+AGG - chr8.2:78121488-78121507 None:intergenic 15.0%
!!! GAACTTTTTATGTTAATTTT+TGG - chr8.2:78124344-78124363 None:intergenic 15.0%
!!! GAAGAAAGTTTTAAAAATTT+GGG + chr8.2:78124203-78124222 MS.gene36707:intron 15.0%
!!! GTAAATTAATAGTCTTTTTT+TGG + chr8.2:78122004-78122023 MS.gene36707:intron 15.0%
!!! TGAAGAAAGTTTTAAAAATT+TGG + chr8.2:78124202-78124221 MS.gene36707:intron 15.0%
!!! TTAGAGAATATATTCATTTT+TGG - chr8.2:78122811-78122830 None:intergenic 15.0%
!!! TTTTTTATATCGAATTTAGA+TGG + chr8.2:78122218-78122237 MS.gene36707:intron 15.0%
!! AATTATAGAGCAAAAATAAC+AGG - chr8.2:78122752-78122771 None:intergenic 20.0%
!! AATTGGTTATTAAACCAAAA+AGG - chr8.2:78123595-78123614 None:intergenic 20.0%
!! AGTAAAAACTTAATAACTCT+AGG - chr8.2:78124786-78124805 None:intergenic 20.0%
!! ATATAATATTAGCGGAAAAA+CGG + chr8.2:78123708-78123727 MS.gene36707:intron 20.0%
!! ATGAACATTATAACATATAC+AGG + chr8.2:78123259-78123278 MS.gene36707:intron 20.0%
!! ATTATAGAGCAAAAATAACA+GGG - chr8.2:78122751-78122770 None:intergenic 20.0%
!! ATTGGTTATTAAACCAAAAA+GGG - chr8.2:78123594-78123613 None:intergenic 20.0%
!! CATGTAGAAAAAACAAATTA+TGG + chr8.2:78123969-78123988 MS.gene36707:intron 20.0%
!! TTGGAAATGTAACATATATT+AGG - chr8.2:78124005-78124024 None:intergenic 20.0%
!! TTTCAGCTAGAAAAAAAAAA+AGG - chr8.2:78124729-78124748 None:intergenic 20.0%
!!! ACATTGAATTGAATTTTGAA+AGG - chr8.2:78124163-78124182 None:intergenic 20.0%
!!! ACGCTTTTATATTGATATAT+CGG - chr8.2:78123745-78123764 None:intergenic 20.0%
!!! AGCTATTTTTAATCATAATC+AGG + chr8.2:78123025-78123044 MS.gene36707:intron 20.0%
!!! ATAAGATACCATTCATTTTA+TGG + chr8.2:78124286-78124305 MS.gene36707:CDS 20.0%
!!! ATATTCATTTTTGGAATTAG+AGG - chr8.2:78122802-78122821 None:intergenic 20.0%
!!! ATTGATCAACATGATTATTT+TGG + chr8.2:78121216-78121235 MS.gene36707:CDS 20.0%
!!! CATTCAACTTATTTTCTATT+TGG + chr8.2:78123939-78123958 MS.gene36707:intron 20.0%
!!! CATTTTTTTGGCAAAATTTA+TGG + chr8.2:78121301-78121320 MS.gene36707:intron 20.0%
!!! GCCAAAAAAATGAAATTTTT+GGG - chr8.2:78121293-78121312 None:intergenic 20.0%
!!! GCTATTTTTAATCATAATCA+GGG + chr8.2:78123026-78123045 MS.gene36707:intron 20.0%
!!! TATATGTTTTTTTTGTCCTA+TGG + chr8.2:78121364-78121383 MS.gene36707:intron 20.0%
!!! TCCCAAAAATTTCATTTTTT+TGG + chr8.2:78121289-78121308 MS.gene36707:intron 20.0%
!!! TGCCAAAAAAATGAAATTTT+TGG - chr8.2:78121294-78121313 None:intergenic 20.0%
!!! TTTTATTTTGATTTAGCCAT+AGG - chr8.2:78121383-78121402 None:intergenic 20.0%
!!! TTTTTGCTCTATAATTCTTT+AGG + chr8.2:78122756-78122775 MS.gene36707:intron 20.0%
! AACTATTGATAGGGTTATAT+TGG - chr8.2:78122579-78122598 None:intergenic 25.0%
! AATGGGGTATATAAGTTTAA+TGG - chr8.2:78122173-78122192 None:intergenic 25.0%
! ACCTATACCAATATAGAAAA+TGG - chr8.2:78123863-78123882 None:intergenic 25.0%
! ATGGATAGATCTAGATAATA+TGG + chr8.2:78122237-78122256 MS.gene36707:intron 25.0%
! CTAGCTGAAAAAAATTAACA+AGG + chr8.2:78124739-78124758 MS.gene36707:intron 25.0%
! GAATCAGATCTATAAGAATT+GGG + chr8.2:78121710-78121729 MS.gene36707:intron 25.0%
! GCATACACTTAAAAATATGT+AGG + chr8.2:78123217-78123236 MS.gene36707:intron 25.0%
! TATAACTTATGCACTCTTTA+CGG + chr8.2:78121937-78121956 MS.gene36707:intron 25.0%
! TCATAACCAATCAAATCAAA+TGG + chr8.2:78124362-78124381 MS.gene36707:intron 25.0%
! TGAACTTACCATAAAATGAA+TGG - chr8.2:78124297-78124316 None:intergenic 25.0%
! TGAATCAGATCTATAAGAAT+TGG + chr8.2:78121709-78121728 MS.gene36707:intron 25.0%
! TGTATGTACATTTATTCAGA+AGG - chr8.2:78123166-78123185 None:intergenic 25.0%
! TTAAACTTATATACCCCATT+TGG + chr8.2:78122173-78122192 MS.gene36707:intron 25.0%
! TTAATGGTAGTAAATTGATG+TGG + chr8.2:78122087-78122106 MS.gene36707:intron 25.0%
! TTTCCTTAAAATACTGGAAT+TGG - chr8.2:78124024-78124043 None:intergenic 25.0%
!! AATGAATTTTTCTACAAGAG+AGG - chr8.2:78121331-78121350 None:intergenic 25.0%
!! ACCATTTTCTATATTGGTAT+AGG + chr8.2:78123859-78123878 MS.gene36707:intron 25.0%
!! GAATTCGTGTTTTATGAAAT+TGG + chr8.2:78121630-78121649 MS.gene36707:intron 25.0%
!! TCTCTTACCATTTTCTATAT+TGG + chr8.2:78123853-78123872 MS.gene36707:intron 25.0%
!! TTTATATTGATATATCGGCT+CGG - chr8.2:78123740-78123759 None:intergenic 25.0%
!! TTTCCAATTCCAGTATTTTA+AGG + chr8.2:78124018-78124037 MS.gene36707:intron 25.0%
!!! AAAAATGAAATTTTTGGGAG+AGG - chr8.2:78121288-78121307 None:intergenic 25.0%
!!! AAAATGAAATTTTTGGGAGA+GGG - chr8.2:78121287-78121306 None:intergenic 25.0%
!!! AAAATTTGGGTGTTGTTTTA+AGG + chr8.2:78124216-78124235 MS.gene36707:intron 25.0%
!!! AAGTTTGCTAAAAGTAAAGA+AGG - chr8.2:78121254-78121273 None:intergenic 25.0%
!!! AATTGACCATTTGATTTGAT+TGG - chr8.2:78124371-78124390 None:intergenic 25.0%
!!! AGATAATATGGCGTTTTTTT+TGG + chr8.2:78122249-78122268 MS.gene36707:intron 25.0%
!!! AGTTTGCTAAAAGTAAAGAA+GGG - chr8.2:78121253-78121272 None:intergenic 25.0%
!!! ATAGTCTTTTAACTAACATG+TGG - chr8.2:78122984-78123003 None:intergenic 25.0%
!!! ATTTTTGGAATTAGAGGAAA+AGG - chr8.2:78122796-78122815 None:intergenic 25.0%
!!! ATTTTTTTTCCTTCCCTTTT+TGG + chr8.2:78123578-78123597 MS.gene36707:intron 25.0%
!!! GCAATTCTAAATGTTTTGAT+TGG + chr8.2:78122109-78122128 MS.gene36707:intron 25.0%
!!! GTAATTTTTTGTCTCGATAA+TGG + chr8.2:78121512-78121531 MS.gene36707:intron 25.0%
!!! TAGTCTTTTAACTAACATGT+GGG - chr8.2:78122983-78123002 None:intergenic 25.0%
!!! TTGTTTTGTAGCTTTACATA+GGG + chr8.2:78124415-78124434 MS.gene36707:intron 25.0%
!!! TTTGTTTTGTAGCTTTACAT+AGG + chr8.2:78124414-78124433 MS.gene36707:intron 25.0%
AAAGTAGAGATTAAGTACCA+TGG - chr8.2:78123484-78123503 None:intergenic 30.0%
AAGAAAATGAGAGAGGAATA+TGG + chr8.2:78123284-78123303 MS.gene36707:CDS 30.0%
AATAACTCTAGGCAAAAACT+AGG - chr8.2:78124775-78124794 None:intergenic 30.0%
AATTGATGTTCTCACATCAA+AGG + chr8.2:78122529-78122548 MS.gene36707:intron 30.0%
AGAAAATGAGAGAGGAATAT+GGG + chr8.2:78123285-78123304 MS.gene36707:CDS 30.0%
AGGAAATAAAAGGTTTCTTG+AGG - chr8.2:78124709-78124728 None:intergenic 30.0%
ATAACTCTAGGCAAAAACTA+GGG - chr8.2:78124774-78124793 None:intergenic 30.0%
ATACGAGATTGTGAATTTGT+TGG + chr8.2:78121545-78121564 MS.gene36707:intron 30.0%
ATTTGAATCAATGCAGATCT+TGG + chr8.2:78123612-78123631 MS.gene36707:intron 30.0%
GGGTATATAAGTTTAATGGT+GGG - chr8.2:78122169-78122188 None:intergenic 30.0%
GTAGATGCTTACAAAATCAA+AGG - chr8.2:78123121-78123140 None:intergenic 30.0%
GTTATTAAACCAAAAAGGGA+AGG - chr8.2:78123590-78123609 None:intergenic 30.0%
TAAACACTTGATGAATGATG+AGG + chr8.2:78124448-78124467 MS.gene36707:CDS 30.0%
TAACAATGTCATGATGTCAT+GGG + chr8.2:78124108-78124127 MS.gene36707:CDS 30.0%
TAGTACTACTTGGTATATGT+TGG + chr8.2:78122851-78122870 MS.gene36707:intron 30.0%
TGCTTACAAAATCAAAGGAT+TGG - chr8.2:78123116-78123135 None:intergenic 30.0%
TTAACAATGTCATGATGTCA+TGG + chr8.2:78124107-78124126 MS.gene36707:CDS 30.0%
! CTGGATTTTCCTTAAAATAC+TGG - chr8.2:78124030-78124049 None:intergenic 30.0%
! GGATTAAACTTGTCATTTCA+TGG + chr8.2:78122643-78122662 MS.gene36707:intron 30.0%
! GTTTGCTAAAAGTAAAGAAG+GGG - chr8.2:78121252-78121271 None:intergenic 30.0%
! TAAGTTGAATGATTACCTTG+TGG - chr8.2:78123930-78123949 None:intergenic 30.0%
! TACGAGATTGTGAATTTGTT+GGG + chr8.2:78121546-78121565 MS.gene36707:intron 30.0%
! TATATAAGTTTAATGGTGGG+AGG - chr8.2:78122166-78122185 None:intergenic 30.0%
!! AGATCTGCATTGATTCAAAT+TGG - chr8.2:78123612-78123631 None:intergenic 30.0%
AACAATGTCATGATGTCATG+GGG + chr8.2:78124109-78124128 MS.gene36707:CDS 35.0%
AACAGCTGAAGCTATAAGAA+AGG + chr8.2:78123418-78123437 MS.gene36707:CDS 35.0%
AATTAGAGGAAAAGGCTCAA+TGG - chr8.2:78122788-78122807 None:intergenic 35.0%
ACCAAGTAGTACTAACATGT+GGG - chr8.2:78122845-78122864 None:intergenic 35.0%
AGGAATATGGGAAATTGAAC+AGG + chr8.2:78123297-78123316 MS.gene36707:CDS 35.0%
AGGACTATCCAAATGAAGAT+TGG + chr8.2:78123438-78123457 MS.gene36707:CDS 35.0%
AGGATGTTGAGAACTTGAAA+TGG + chr8.2:78124468-78124487 MS.gene36707:CDS 35.0%
ATCTGATGTTGAGTCAAAGA+CGG + chr8.2:78121822-78121841 MS.gene36707:CDS 35.0%
ATTAGAGGAAAAGGCTCAAT+GGG - chr8.2:78122787-78122806 None:intergenic 35.0%
ATTGGTTGCGTGTACAAAAT+TGG + chr8.2:78122127-78122146 MS.gene36707:intron 35.0%
CAAGAATCACGAAATTAGCT+GGG - chr8.2:78121691-78121710 None:intergenic 35.0%
CGGTAGTTTCAATCGAATTT+GGG + chr8.2:78122622-78122641 MS.gene36707:intron 35.0%
GAGATTAAGTACCATGGATA+AGG - chr8.2:78123478-78123497 None:intergenic 35.0%
GGAATATGGGAAATTGAACA+GGG + chr8.2:78123298-78123317 MS.gene36707:CDS 35.0%
GGGGTATATAAGTTTAATGG+TGG - chr8.2:78122170-78122189 None:intergenic 35.0%
GTCTAACAAATCTATACCGT+TGG + chr8.2:78121568-78121587 MS.gene36707:intron 35.0%
GTTGGTACTACTTGATATGT+TGG + chr8.2:78122869-78122888 MS.gene36707:intron 35.0%
TAACTCTAGGCAAAAACTAG+GGG - chr8.2:78124773-78124792 None:intergenic 35.0%
TACCAAGTAGTACTAACATG+TGG - chr8.2:78122846-78122865 None:intergenic 35.0%
TATGCAGAGTTGTTATAGTC+TGG - chr8.2:78124049-78124068 None:intergenic 35.0%
TCAAGAATCACGAAATTAGC+TGG - chr8.2:78121692-78121711 None:intergenic 35.0%
TCTGCATACAACACTAGATA+TGG + chr8.2:78124061-78124080 MS.gene36707:CDS 35.0%
TTGTGAACTTCTGAATGAAG+TGG + chr8.2:78123343-78123362 MS.gene36707:CDS 35.0%
TTGTGATCCACAGTAGAATT+AGG - chr8.2:78122916-78122935 None:intergenic 35.0%
! GGAATTTACTCTGAGAAATG+TGG + chr8.2:78124082-78124101 MS.gene36707:CDS 35.0%
! TGCTAACTTGTACTTCTTAG+AGG + chr8.2:78122320-78122339 MS.gene36707:intron 35.0%
! TTTGTAGCTTTACATAGGGA+AGG + chr8.2:78124419-78124438 MS.gene36707:intron 35.0%
!! AGTGAGAGTTGATGTTGAAA+AGG + chr8.2:78124644-78124663 MS.gene36707:CDS 35.0%
!!! ATTTGGGTGTTGTTTTAAGG+TGG + chr8.2:78124219-78124238 MS.gene36707:intron 35.0%
AAGTGCAGCCAATCTTCATT+TGG - chr8.2:78123449-78123468 None:intergenic 40.0%
AATTCGATTGAAACTACCGC+CGG - chr8.2:78122621-78122640 None:intergenic 40.0%
ACAGGTGAAGAAAATGAGAG+AGG + chr8.2:78123277-78123296 MS.gene36707:intron 40.0%
ATAGGTGACATATACCCAGT+TGG + chr8.2:78123877-78123896 MS.gene36707:intron 40.0%
ATCGGCGGTTAACTATTGAT+AGG - chr8.2:78122589-78122608 None:intergenic 40.0%
ATTATGCTGCTGAAAGTGAG+AGG + chr8.2:78123049-78123068 MS.gene36707:CDS 40.0%
ATTTGTGGTTCATCCAAGTC+AGG - chr8.2:78123383-78123402 None:intergenic 40.0%
CAAATCTATACCGTTGGATC+TGG + chr8.2:78121574-78121593 MS.gene36707:intron 40.0%
CAGATCAGTACATCCAAATG+GGG - chr8.2:78122189-78122208 None:intergenic 40.0%
CATCAAATCTGCAACCAACT+GGG - chr8.2:78123894-78123913 None:intergenic 40.0%
CTACATCTCCCTCATTGAAA+AGG + chr8.2:78124677-78124696 MS.gene36707:CDS 40.0%
GAATAAGACTACTCTACCCT+CGG + chr8.2:78124249-78124268 MS.gene36707:CDS 40.0%
GCAGATCAGTACATCCAAAT+GGG - chr8.2:78122190-78122209 None:intergenic 40.0%
GCGGTAGTTTCAATCGAATT+TGG + chr8.2:78122621-78122640 MS.gene36707:intron 40.0%
GCTCTATAATTCTTTAGGCC+AGG + chr8.2:78122761-78122780 MS.gene36707:intron 40.0%
GGTTGTTAATGAGACAGAAC+TGG + chr8.2:78121846-78121865 MS.gene36707:CDS 40.0%
GTTGAATGATTACCTTGTGG+TGG - chr8.2:78123927-78123946 None:intergenic 40.0%
TAATGAGACAGAACTGGAGT+TGG + chr8.2:78121852-78121871 MS.gene36707:CDS 40.0%
TAGCTTCAGCTGTTTGTAGA+AGG - chr8.2:78123412-78123431 None:intergenic 40.0%
TATCAATAGTTAACCGCCGA+TGG + chr8.2:78122588-78122607 MS.gene36707:intron 40.0%
TCAATGAGGGAGATGTAGTA+TGG - chr8.2:78124675-78124694 None:intergenic 40.0%
TCACTTGCCTAATTCTACTG+TGG + chr8.2:78122906-78122925 MS.gene36707:intron 40.0%
TCATCAAATCTGCAACCAAC+TGG - chr8.2:78123895-78123914 None:intergenic 40.0%
TCCCACATGTTAGTACTACT+TGG + chr8.2:78122841-78122860 MS.gene36707:intron 40.0%
TCGGCGGTTAACTATTGATA+GGG - chr8.2:78122588-78122607 None:intergenic 40.0%
TGAACTTCTGAATGAAGTGG+TGG + chr8.2:78123346-78123365 MS.gene36707:CDS 40.0%
TGCAGATCAGTACATCCAAA+TGG - chr8.2:78122191-78122210 None:intergenic 40.0%
TTTGTGGTTCATCCAAGTCA+GGG - chr8.2:78123382-78123401 None:intergenic 40.0%
! AAAAGTGTGCCCAAATGAGT+TGG - chr8.2:78121902-78121921 None:intergenic 40.0%
! ACTCATTTGGGCACACTTTT+AGG + chr8.2:78121902-78121921 MS.gene36707:CDS 40.0%
! AGGTGCTTACCTTTTCAATG+AGG - chr8.2:78124689-78124708 None:intergenic 40.0%
! GGTGCTTACCTTTTCAATGA+GGG - chr8.2:78124688-78124707 None:intergenic 40.0%
!! TGCTTCTCCTTCCTAGTTTT+GGG + chr8.2:78123640-78123659 MS.gene36707:CDS 40.0%
!! TGTAGAAGGTGCTCTATTTG+TGG - chr8.2:78123398-78123417 None:intergenic 40.0%
!!! GTGTTGTTTTAAGGTGGCAA+AGG + chr8.2:78124225-78124244 MS.gene36707:intron 40.0%
ACAGGGTAGAGATGAGCATA+TGG + chr8.2:78123315-78123334 MS.gene36707:CDS 45.0%
ATGATGAACATAGCAGCCGA+GGG - chr8.2:78124268-78124287 None:intergenic 45.0%
ATTGTCCGATCCAGATCCAA+CGG - chr8.2:78121587-78121606 None:intergenic 45.0%
CAGGGTAGAGATGAGCATAT+GGG + chr8.2:78123316-78123335 MS.gene36707:CDS 45.0%
CTATACCGTTGGATCTGGAT+CGG + chr8.2:78121579-78121598 MS.gene36707:intron 45.0%
GCCTGATTGACACAGTAAAG+GGG - chr8.2:78122729-78122748 None:intergenic 45.0%
GGCCTGATTGACACAGTAAA+GGG - chr8.2:78122730-78122749 None:intergenic 45.0%
TATGATGAACATAGCAGCCG+AGG - chr8.2:78124269-78124288 None:intergenic 45.0%
TCCCCTTTACTGTGTCAATC+AGG + chr8.2:78122725-78122744 MS.gene36707:intron 45.0%
TGAATCCATTGTCCACCACA+AGG + chr8.2:78123912-78123931 MS.gene36707:CDS 45.0%
TGATGTTGAGTCAAAGACGG+TGG + chr8.2:78121825-78121844 MS.gene36707:CDS 45.0%
TTACCTACAACAGCCCATTG+AGG - chr8.2:78123672-78123691 None:intergenic 45.0%
! GAAGATTGGCTGCACTTAAC+TGG + chr8.2:78123452-78123471 MS.gene36707:CDS 45.0%
! GTGCTTCTCCTTCCTAGTTT+TGG + chr8.2:78123639-78123658 MS.gene36707:CDS 45.0%
! TACCGCCGGTTAAAATCCAT+CGG - chr8.2:78122607-78122626 None:intergenic 45.0%
!! AACCGCCGATGGATTTTAAC+CGG + chr8.2:78122599-78122618 MS.gene36707:intron 45.0%
!! CACTTAACTGGCCTTATCCA+TGG + chr8.2:78123464-78123483 MS.gene36707:CDS 45.0%
!! GATTACCTTGTGGTGGACAA+TGG - chr8.2:78123920-78123939 None:intergenic 45.0%
!! TGGTGGATTTGTTATGCCAC+AGG + chr8.2:78121876-78121895 MS.gene36707:CDS 45.0%
!! TTTTGGGGGACTTCCTCAAT+GGG + chr8.2:78123656-78123675 MS.gene36707:CDS 45.0%
!!! CTTCTCCTTCCTAGTTTTGG+GGG + chr8.2:78123642-78123661 MS.gene36707:CDS 45.0%
!!! GCTTCTCCTTCCTAGTTTTG+GGG + chr8.2:78123641-78123660 MS.gene36707:CDS 45.0%
!! TATTATAATAAAATTATTAC+AGG + chr8.2:78121799-78121818 MS.gene36707:intron 5.0%
AAGTGAGAGGCAAGAAGGAG+TGG + chr8.2:78123062-78123081 MS.gene36707:CDS 50.0%
ACAGAACTGGAGTTGGATGG+TGG + chr8.2:78121859-78121878 MS.gene36707:CDS 50.0%
ACTTCCCTGCAAAGCTGAAG+TGG + chr8.2:78124829-78124848 MS.gene36707:CDS 50.0%
ATGCCACAGGCCAACTCATT+TGG + chr8.2:78121889-78121908 MS.gene36707:CDS 50.0%
GAAGTCCCCCAAAACTAGGA+AGG - chr8.2:78123650-78123669 None:intergenic 50.0%
GAGACAGAACTGGAGTTGGA+TGG + chr8.2:78121856-78121875 MS.gene36707:CDS 50.0%
GCTGAAAGTGAGAGGCAAGA+AGG + chr8.2:78123057-78123076 MS.gene36707:CDS 50.0%
GGGCCTGATTGACACAGTAA+AGG - chr8.2:78122731-78122750 None:intergenic 50.0%
TGAGGAAGTCCCCCAAAACT+AGG - chr8.2:78123654-78123673 None:intergenic 50.0%
TGCCACAGGCCAACTCATTT+GGG + chr8.2:78121890-78121909 MS.gene36707:CDS 50.0%
!! CTTCCTCAATGGGCTGTTGT+AGG + chr8.2:78123666-78123685 MS.gene36707:CDS 50.0%
!!! GTTTTGGGGGACTTCCTCAA+TGG + chr8.2:78123655-78123674 MS.gene36707:CDS 50.0%
AGGAAAAGGCTCAATGGGCC+TGG - chr8.2:78122782-78122801 None:intergenic 55.0%
GGATGAGAGTGACCCTGACT+TGG + chr8.2:78123367-78123386 MS.gene36707:CDS 55.0%
! CGCCGGTTAAAATCCATCGG+CGG - chr8.2:78122604-78122623 None:intergenic 55.0%
! TGCCCAAATGAGTTGGCCTG+TGG - chr8.2:78121895-78121914 None:intergenic 55.0%
!! CGCCGATGGATTTTAACCGG+CGG + chr8.2:78122602-78122621 MS.gene36707:intron 55.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 78121204 78124854 78121204 ID=MS.gene36707
chr8.2 mRNA 78121204 78124854 78121204 ID=MS.gene36707.t1;Parent=MS.gene36707
chr8.2 exon 78121204 78121237 78121204 ID=MS.gene36707.t1.exon1;Parent=MS.gene36707.t1
chr8.2 CDS 78121204 78121237 78121204 ID=cds.MS.gene36707.t1;Parent=MS.gene36707.t1
chr8.2 exon 78121821 78121923 78121821 ID=MS.gene36707.t1.exon2;Parent=MS.gene36707.t1
chr8.2 CDS 78121821 78121923 78121821 ID=cds.MS.gene36707.t1;Parent=MS.gene36707.t1
chr8.2 exon 78123047 78123128 78123047 ID=MS.gene36707.t1.exon3;Parent=MS.gene36707.t1
chr8.2 CDS 78123047 78123128 78123047 ID=cds.MS.gene36707.t1;Parent=MS.gene36707.t1
chr8.2 exon 78123281 78123485 78123281 ID=MS.gene36707.t1.exon4;Parent=MS.gene36707.t1
chr8.2 CDS 78123281 78123485 78123281 ID=cds.MS.gene36707.t1;Parent=MS.gene36707.t1
chr8.2 exon 78123628 78123687 78123628 ID=MS.gene36707.t1.exon5;Parent=MS.gene36707.t1
chr8.2 CDS 78123628 78123687 78123628 ID=cds.MS.gene36707.t1;Parent=MS.gene36707.t1
chr8.2 exon 78123881 78123933 78123881 ID=MS.gene36707.t1.exon6;Parent=MS.gene36707.t1
chr8.2 CDS 78123881 78123933 78123881 ID=cds.MS.gene36707.t1;Parent=MS.gene36707.t1
chr8.2 exon 78124031 78124153 78124031 ID=MS.gene36707.t1.exon7;Parent=MS.gene36707.t1
chr8.2 CDS 78124031 78124153 78124031 ID=cds.MS.gene36707.t1;Parent=MS.gene36707.t1
chr8.2 exon 78124238 78124307 78124238 ID=MS.gene36707.t1.exon8;Parent=MS.gene36707.t1
chr8.2 CDS 78124238 78124307 78124238 ID=cds.MS.gene36707.t1;Parent=MS.gene36707.t1
chr8.2 exon 78124426 78124504 78124426 ID=MS.gene36707.t1.exon9;Parent=MS.gene36707.t1
chr8.2 CDS 78124426 78124504 78124426 ID=cds.MS.gene36707.t1;Parent=MS.gene36707.t1
chr8.2 exon 78124617 78124698 78124617 ID=MS.gene36707.t1.exon10;Parent=MS.gene36707.t1
chr8.2 CDS 78124617 78124698 78124617 ID=cds.MS.gene36707.t1;Parent=MS.gene36707.t1
chr8.2 exon 78124828 78124854 78124828 ID=MS.gene36707.t1.exon11;Parent=MS.gene36707.t1
chr8.2 CDS 78124828 78124854 78124828 ID=cds.MS.gene36707.t1;Parent=MS.gene36707.t1
Gene Sequence

>MS.gene36707

ATGACTATTCTCATTGATCAACATGATTATTTTGGTAATTTTTAACCCCTTCTTTACTTTTAGCAAACTTTTATTTTTATCCCTCTCCCAAAAATTTCATTTTTTTGGCAAAATTTATGGTTTTCCTCTCTTGTAGAAAAATTCATTTTTTTTAGTGCAATATATGTTTTTTTTGTCCTATGGCTAAATCAAAATAAAAAGTAGTTTTATATCTTGTAATTTTTGTTTTAAAAAAAATTGATCGAAATATATTTGTTTTCTTTATGATTTGTACAATTTTCCCTTTAATTGTAACTTATGTATAATCTGTAATTTTTTGTCTCGATAATGGATCTAGATTTATACGAGATTGTGAATTTGTTGGGTCTAACAAATCTATACCGTTGGATCTGGATCGGACAATTCACATTTTAATTTTTTAATTATGAATTCGTGTTTTATGAAATTGGATCATGAGCAGTTGATTAAAGTTTGACTCAATTGACCCAGCTAATTTCGTGATTCTTGAATCAGATCTATAAGAATTGGGTTGATTTGAAATTTTAAAATGTGCACAAAATTGTGTATTTTGTTTTCTATTAATTAATTGGTTTATTATTATAATAAAATTATTACAGGATCTGATGTTGAGTCAAAGACGGTGGTTGTTAATGAGACAGAACTGGAGTTGGATGGTGGATTTGTTATGCCACAGGCCAACTCATTTGGGCACACTTTTAGGTTCAATTCTTCATATAACTTATGCACTCTTTACGGCTTGTTATTACATGCTCTAAAAAAAAAATTAGAGTTTAATGGTAGTAAATTAATAGTCTTTTTTTGGTTACAGTAGTAAATTAATAGTCTAAAATAACTTTGCACACAACTAAAAAAAAAATAGAGTTTAATGGTAGTAAATTGATGTGGCAATTCTAAATGTTTTGATTGGTTGCGTGTACAAAATTGGTTTGAACTGTCAACCTCCCACCATTAAACTTATATACCCCATTTGGATGTACTGATCTGCATAAGAACTTTTTTATATCGAATTTAGATGGATAGATCTAGATAATATGGCGTTTTTTTTGGCTATTGAGATAAATAAATTCAGATAAAATTGGTTTTAAAAATAAATCATGCTAACTTGTACTTCTTAGAGGTACAAGTTAAAAAGTTAATTAAGGAGTTAAAAATAAATTTCTGTATTAAATAAATTTCATTTTTAAGTTTTTAAGATTATGATTACACAATTTTTAAAATTTTACTATTTATATTTGACTTTTTAAGTATCTTTAGAATACAAGTTAACATTTCCGTTTAAAAAATATGTTTGAAAGAAGTTTGAAAATTGATGTTCTCACATCAAAGGTTGCTATGAAACATCAAAAAATTACCAATATAACCCTATCAATAGTTAACCGCCGATGGATTTTAACCGGCGGTAGTTTCAATCGAATTTGGGATTAAACTTGTCATTTCATGGTGTTTCTTAGCATTGTGTGAAGTGTGAAAAACAATTTTCAATAAGTTTTCTAAAATTCTTCCCCTTTACTGTGTCAATCAGGCCCTGTTATTTTTGCTCTATAATTCTTTAGGCCAGGCCCATTGAGCCTTTTCCTCTAATTCCAAAAATGAATATATTCTCTAATTCTTCATTTTCCCACATGTTAGTACTACTTGGTATATGTTGGTACTACTTGATATGTTGGTACTACTTGCTATTTCACTTGCCTAATTCTACTGTGGATCACAAACTATGAAAAGTAAAAATGAATATATTCTCTAATTCTTCATTTTCCCACATGTTAGTTAAAAGACTATAAGAATTATCTTACATTGATAAGCTATTTTTAATCATAATCAGGGATTATGCTGCTGAAAGTGAGAGGCAAGAAGGAGTGGAGAACTTCTACAAAAAAAATCACATTTACCAATCCTTTGATTTTGTAAGCATCTACCACAAATCTTTCATTTATTTTTCCTTCTGAATAAATGTACATACAACACATTTGTCACAATTTGTGCTAGCAATTAGCATACACTTAAAAATATGTAGGTATGAAAAATGATATTAATATGAACATTATAACATATACAGGTGAAGAAAATGAGAGAGGAATATGGGAAATTGAACAGGGTAGAGATGAGCATATGGGAATGTTGTGAACTTCTGAATGAAGTGGTGGATGAGAGTGACCCTGACTTGGATGAACCACAAATAGAGCACCTTCTACAAACAGCTGAAGCTATAAGAAAGGACTATCCAAATGAAGATTGGCTGCACTTAACTGGCCTTATCCATGGTACTTAATCTCTACTTTCTTAGTTAATTACTACATTATGACTTCATTACATAAAAGATATATTTTTTCATGTGCTTGAAATTTAGCATGCTATTTTTTTTCCTTCCCTTTTTGGTTTAATAACCAATTTGAATCAATGCAGATCTTGGCAAAGTGCTTCTCCTTCCTAGTTTTGGGGGACTTCCTCAATGGGCTGTTGTAGGTAAGTGAGATGTTACATTTATATAATATTAGCGGAAAAACGGACACTACCGAGCCGATATATCAATATAAAAGCGTGTTTTATTTTATTTATAGTTTATACTATAGTTTATAGCTAATATATACATAACTTATAATATTTGTCAATTTTTAGTTGAAAGTGTGATCTCTTACCATTTTCTATATTGGTATAGGTGACATATACCCAGTTGGTTGCAGATTTGATGAATCCATTGTCCACCACAAGGTAATCATTCAACTTATTTTCTATTTGGATGTAGTCATGTAGAAAAAACAAATTATGGAAATTAAACACCTAATATATGTTACATTTCCAATTCCAGTATTTTAAGGAAAATCCAGACTATAACAACTCTGCATACAACACTAGATATGGAATTTACTCTGAGAAATGTGGACTTAACAATGTCATGATGTCATGGGGACATGATGACTACATGTATCTAGTAAGTCCTTTCAAAATTCAATTCAATGTTATTATTTCATAAAAATAGTGAAGAAAGTTTTAAAAATTTGGGTGTTGTTTTAAGGTGGCAAAGGAGAATAAGACTACTCTACCCTCGGCTGCTATGTTCATCATAAGATACCATTCATTTTATGGTAAGTTCAACTTAGAAGTAAAAATTTTATAGTCCAAAAATTAACATAAAAAGTTCATAACCAATCAAATCAAATGGTCAATTTGTAATTTTATTTGACACAAAAATTTGTTTTGTAGCTTTACATAGGGAAGGAGCTTATAAACACTTGATGAATGATGAGGATGTTGAGAACTTGAAATGGCTTCACATTTTCAAGTAATATTACATGATTATTATTATTTCTTAATTTTTATCAAGTATGCAAATATAAAGATTAATTAATGTTTTCTCTAACTTTAAACTTCTTCTACATTTCAATCAATTGTAGCAAATATGATCTCTACAGCAAGAGCAAAGTGAGAGTTGATGTTGAAAAGGTAAAACCATACTACATCTCCCTCATTGAAAAGGTAAGCACCTCAAGAAACCTTTTATTTCCTTTTTTTTTTTCTAGCTGAAAAAAATTAACAAGGTTGATTTTCCCCTAGTTTTTGCCTAGAGTTATTAAGTTTTTACTAATGCATCTTTATTTGCTACAGTACTTCCCTGCAAAGCTGAAGTGGTGA

Protein sequence

>MS.gene36707.t1

MTILIDQHDYFGSDVESKTVVVNETELELDGGFVMPQANSFGHTFRDYAAESERQEGVENFYKKNHIYQSFDFVKKMREEYGKLNRVEMSIWECCELLNEVVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLLPSFGGLPQWAVVGDIYPVGCRFDESIVHHKYFKENPDYNNSAYNTRYGIYSEKCGLNNVMMSWGHDDYMYLVAKENKTTLPSAAMFIIRYHSFYALHREGAYKHLMNDEDVENLKWLHIFNKYDLYSKSKVRVDVEKVKPYYISLIEKYFPAKLKW