Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02970.t1 | XP_003591628.1 | 92.5 | 413 | 30 | 1 | 1 | 412 | 1 | 413 | 3.30E-211 | 744.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02970.t1 | G7I2X4 | 92.5 | 413 | 30 | 1 | 1 | 412 | 1 | 413 | 2.4e-211 | 744.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52739 | MS.gene02970 | PPI |
| MS.gene02970 | MS.gene21571 | PPI |
| MS.gene02970 | MS.gene72916 | PPI |
| MS.gene02970 | MS.gene018063 | PPI |
| MS.gene02970 | MS.gene21345 | PPI |
| MS.gene005686 | MS.gene02970 | PPI |
| MS.gene02970 | MS.gene04697 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02970.t1 | MTR_1g089980 | 92.231 | 399 | 30 | 1 | 1 | 398 | 1 | 399 | 0.0 | 743 |
| MS.gene02970.t1 | MTR_7g094470 | 57.656 | 418 | 169 | 3 | 2 | 412 | 1 | 417 | 1.76e-166 | 473 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02970.t1 | AT4G02920 | 37.674 | 430 | 232 | 11 | 5 | 412 | 3 | 418 | 8.40e-83 | 260 |
| MS.gene02970.t1 | AT4G02920 | 37.915 | 422 | 241 | 10 | 5 | 412 | 3 | 417 | 1.81e-82 | 259 |
| MS.gene02970.t1 | AT1G03340 | 34.722 | 360 | 200 | 8 | 56 | 412 | 58 | 385 | 1.54e-53 | 183 |
Find 78 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAACACAGGGTTGGGTTT+TGG | 0.134883 | 1.1:-65912424 | MS.gene02970:CDS |
| TTGGGCTTATTTGGCTTTCT+TGG | 0.139996 | 1.1:-65912405 | MS.gene02970:CDS |
| GAGATGTAGAAATTCCTATT+TGG | 0.209369 | 1.1:+65914275 | None:intergenic |
| AAATGGTCAAGTCACGTTTA+TGG | 0.221667 | 1.1:-65914192 | MS.gene02970:CDS |
| CACTGACCGTTCCTTTAAAA+AGG | 0.233508 | 1.1:-65913161 | MS.gene02970:intron |
| AAAATTACTGTTCATCTAAA+TGG | 0.237725 | 1.1:-65914209 | MS.gene02970:CDS |
| TTGATGGGTTTGCAACTATC+AGG | 0.248405 | 1.1:-65914338 | MS.gene02970:CDS |
| TGGGCTTATTTGGCTTTCTT+GGG | 0.252384 | 1.1:-65912404 | MS.gene02970:CDS |
| GATATCAGAGTCCAAATCTT+AGG | 0.281870 | 1.1:-65914940 | MS.gene02970:CDS |
| GATGAATTTAACCTAAGATT+TGG | 0.287708 | 1.1:+65914929 | None:intergenic |
| TGAGAGCCTTCTGTTCTTGA+TGG | 0.290630 | 1.1:-65912623 | MS.gene02970:CDS |
| GATTCAGAAACTTACTTTGA+TGG | 0.292699 | 1.1:-65915138 | MS.gene02970:CDS |
| CAATTCTCTGCTGGCATTGC+TGG | 0.299676 | 1.1:-65912523 | MS.gene02970:CDS |
| ATTCTCTCATCTACCCAAAT+AGG | 0.325349 | 1.1:-65914289 | MS.gene02970:CDS |
| CTCTGATATCTAATAATATC+TGG | 0.353756 | 1.1:+65914953 | None:intergenic |
| GGATTGGCTTTGACTTTCTT+CGG | 0.356219 | 1.1:+65912715 | None:intergenic |
| TATCTAATAATATCTGGTTT+TGG | 0.360696 | 1.1:+65914959 | None:intergenic |
| AGCTTTGTTGTCTGACTTGA+TGG | 0.364159 | 1.1:-65914354 | MS.gene02970:CDS |
| AATGGTCAAGTCACGTTTAT+GGG | 0.369340 | 1.1:-65914191 | MS.gene02970:CDS |
| GTTCTTTCACTGAAGAAATC+AGG | 0.382585 | 1.1:-65912571 | MS.gene02970:CDS |
| AGATGTAGAAATTCCTATTT+GGG | 0.383642 | 1.1:+65914276 | None:intergenic |
| TCTGCTGGCATTGCTGGTAC+TGG | 0.385638 | 1.1:-65912517 | MS.gene02970:CDS |
| AAGGTCTTCAACACAGGGTT+GGG | 0.391495 | 1.1:-65912430 | MS.gene02970:CDS |
| ATGATAGGGTTGTCAACAAT+TGG | 0.402315 | 1.1:-65914996 | MS.gene02970:intron |
| TGTACATACCTAGTGAAGTA+TGG | 0.405041 | 1.1:+65914074 | None:intergenic |
| AAGCAAGAATGCTGGAAAGA+TGG | 0.436409 | 1.1:-65912347 | MS.gene02970:CDS |
| AGAGAATGCAATGATATTTG+AGG | 0.446652 | 1.1:+65914305 | None:intergenic |
| AGCAAGAATGCTGGAAAGAT+GGG | 0.449740 | 1.1:-65912346 | MS.gene02970:CDS |
| TGTTCTTGATGGCTGATAAG+AGG | 0.453397 | 1.1:-65912612 | MS.gene02970:CDS |
| GAGAATTGTGTAAGGAGCTC+GGG | 0.454630 | 1.1:+65912538 | None:intergenic |
| GAAGACCTTAGACGCACAAA+AGG | 0.465886 | 1.1:+65912444 | None:intergenic |
| ACTGCTGAAGCAGGTGTAGA+TGG | 0.468818 | 1.1:-65914386 | MS.gene02970:CDS |
| GCGTCTAAGGTCTTCAACAC+AGG | 0.476430 | 1.1:-65912436 | MS.gene02970:CDS |
| CTTACTTTGATGGCTTCTCA+TGG | 0.481501 | 1.1:-65915128 | MS.gene02970:CDS |
| GGCTGATAAGAGGCATCGTC+GGG | 0.482476 | 1.1:-65912602 | MS.gene02970:CDS |
| TTCACTGAAGAAATCAGGTC+CGG | 0.487415 | 1.1:-65912566 | MS.gene02970:CDS |
| TGCTAGTAGTGGCAGTGCTA+AGG | 0.499557 | 1.1:-65912252 | MS.gene02970:CDS |
| CTCCTTACACAATTCTCTGC+TGG | 0.505017 | 1.1:-65912532 | MS.gene02970:CDS |
| GGGCTTATTTGGCTTTCTTG+GGG | 0.508276 | 1.1:-65912403 | MS.gene02970:CDS |
| GTAAGGAGCTCGGGAAGCTC+CGG | 0.511742 | 1.1:+65912547 | None:intergenic |
| GTATCAAAACGCACACATAC+AGG | 0.515015 | 1.1:-65914119 | MS.gene02970:CDS |
| AAGACCTTAGACGCACAAAA+GGG | 0.516732 | 1.1:+65912445 | None:intergenic |
| TTCATGGCATATTCTTGAGA+TGG | 0.519316 | 1.1:+65915101 | None:intergenic |
| AAGCTGAAAAGTACAGTGCT+TGG | 0.520108 | 1.1:+65914467 | None:intergenic |
| TAAGGTCTTCAACACAGGGT+TGG | 0.534621 | 1.1:-65912431 | MS.gene02970:CDS |
| AGAGAATTGTGTAAGGAGCT+CGG | 0.542826 | 1.1:+65912537 | None:intergenic |
| GTAGAGTGAATATCCAATGC+GGG | 0.543199 | 1.1:+65913183 | None:intergenic |
| AAAAGAAAGTAGCCAGGGAG+AGG | 0.544026 | 1.1:-65912678 | MS.gene02970:CDS |
| ATCTCAAGAATATGCCATGA+AGG | 0.545054 | 1.1:-65915099 | MS.gene02970:intron |
| CTTGAACAGATCCCTCTCCC+TGG | 0.545602 | 1.1:+65912666 | None:intergenic |
| ACATCTGAGACTGCTGAAGC+AGG | 0.548211 | 1.1:-65914395 | MS.gene02970:CDS |
| AGCTGCAGCGTTGCTAGTAG+TGG | 0.549465 | 1.1:-65912263 | MS.gene02970:CDS |
| GTTAACATAAGCAAGAATGC+TGG | 0.550226 | 1.1:-65912355 | MS.gene02970:CDS |
| TGATGGGTTTGCAACTATCA+GGG | 0.550930 | 1.1:-65914337 | MS.gene02970:CDS |
| CCAACGGTTATTGATGTACA+AGG | 0.561376 | 1.1:-65914830 | MS.gene02970:intron |
| GCTTTGTTGTCTGACTTGAT+GGG | 0.563096 | 1.1:-65914353 | MS.gene02970:CDS |
| CCTTGTACATCAATAACCGT+TGG | 0.573161 | 1.1:+65914830 | None:intergenic |
| TGCCAGCAGAGAATTGTGTA+AGG | 0.578242 | 1.1:+65912530 | None:intergenic |
| GCTGAATATAAATGAAGTAG+AGG | 0.580301 | 1.1:-65913220 | MS.gene02970:CDS |
| TGGCTGATAAGAGGCATCGT+CGG | 0.580551 | 1.1:-65912603 | MS.gene02970:CDS |
| CTTGGGGAGTAAATAAGCTG+AGG | 0.580784 | 1.1:-65912387 | MS.gene02970:CDS |
| TATCAGCCATCAAGAACAGA+AGG | 0.589403 | 1.1:+65912617 | None:intergenic |
| TATTTCAGCTCTAAAGCCAA+CGG | 0.594762 | 1.1:-65914846 | MS.gene02970:CDS |
| TGCTTGTTCCATACTTCACT+AGG | 0.596244 | 1.1:-65914082 | MS.gene02970:intron |
| AAAGAAAGTAGCCAGGGAGA+GGG | 0.598067 | 1.1:-65912677 | MS.gene02970:CDS |
| GACCTTAGACGCACAAAAGG+GGG | 0.599512 | 1.1:+65912447 | None:intergenic |
| CAAGAATGCCATCAAAAGAG+TGG | 0.606435 | 1.1:-65914898 | MS.gene02970:CDS |
| CGTCTAAGGTCTTCAACACA+GGG | 0.609157 | 1.1:-65912435 | MS.gene02970:CDS |
| TCTGCAAACTAGCTTGCGGA+AGG | 0.611580 | 1.1:-65912471 | MS.gene02970:CDS |
| TTGGGGAGTAAATAAGCTGA+GGG | 0.614442 | 1.1:-65912386 | MS.gene02970:CDS |
| AAAGATGGGATTGAAAGATG+AGG | 0.631344 | 1.1:-65912332 | MS.gene02970:CDS |
| GTGATCTGCAAACTAGCTTG+CGG | 0.634286 | 1.1:-65912475 | MS.gene02970:CDS |
| AGACCTTAGACGCACAAAAG+GGG | 0.635020 | 1.1:+65912446 | None:intergenic |
| TAGAGTGAATATCCAATGCG+GGG | 0.642303 | 1.1:+65913184 | None:intergenic |
| CTGCAAACTAGCTTGCGGAA+GGG | 0.661355 | 1.1:-65912470 | MS.gene02970:CDS |
| TCACAGATAGCACGACAGCA+AGG | 0.673650 | 1.1:+65912494 | None:intergenic |
| TGTAGAGTGAATATCCAATG+CGG | 0.714818 | 1.1:+65913182 | None:intergenic |
| AGAGTGAATATCCAATGCGG+GGG | 0.722783 | 1.1:+65913185 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTATATTTATAATTAAATC+CGG | + | chr1.1:65913463-65913482 | None:intergenic | 10.0% |
| !!! | TGAATTTTTTTTTTATGATA+GGG | - | chr1.1:65912376-65912395 | MS.gene02970:CDS | 10.0% |
| !!! | TTGAATTTTTTTTTTATGAT+AGG | - | chr1.1:65912375-65912394 | MS.gene02970:CDS | 10.0% |
| !! | AAAATGCATAAAATTAAAGT+CGG | + | chr1.1:65914427-65914446 | None:intergenic | 15.0% |
| !! | ATAATAGAAAACAATATTCA+GGG | - | chr1.1:65913396-65913415 | MS.gene02970:intron | 15.0% |
| !! | TAACATCAAATTTAAAAACT+TGG | - | chr1.1:65913479-65913498 | MS.gene02970:intron | 15.0% |
| !! | TATACACAAATTCAATAAAT+TGG | + | chr1.1:65912589-65912608 | None:intergenic | 15.0% |
| !!! | ATATTTTGATTATACAATGT+TGG | - | chr1.1:65912616-65912635 | MS.gene02970:CDS | 15.0% |
| !! | AAAATTACTGTTCATCTAAA+TGG | - | chr1.1:65913177-65913196 | MS.gene02970:CDS | 20.0% |
| !! | AAATGCATAAAATTAAAGTC+GGG | + | chr1.1:65914426-65914445 | None:intergenic | 20.0% |
| !! | CAAGAATAGAATATTGAATA+TGG | + | chr1.1:65914097-65914116 | None:intergenic | 20.0% |
| !! | CATAATAGAAAACAATATTC+AGG | - | chr1.1:65913395-65913414 | MS.gene02970:intron | 20.0% |
| !! | CTCATAAAAAATATACAACA+TGG | + | chr1.1:65912709-65912728 | None:intergenic | 20.0% |
| !! | GTTAAAGTAGTAAAAATCAA+TGG | - | chr1.1:65913961-65913980 | MS.gene02970:intron | 20.0% |
| !! | TGTGATCAATTGAATTTAAA+CGG | + | chr1.1:65913347-65913366 | None:intergenic | 20.0% |
| !! | TTTATCGAATTTATCTAACT+AGG | - | chr1.1:65913886-65913905 | MS.gene02970:intron | 20.0% |
| !!! | AACAGTAATTTTTGAACTAA+GGG | + | chr1.1:65913169-65913188 | None:intergenic | 20.0% |
| !!! | AAGTAATGTAACTTATCTTT+TGG | - | chr1.1:65912882-65912901 | MS.gene02970:intron | 20.0% |
| !!! | CACATTTAAAAATGCATTTT+TGG | + | chr1.1:65913505-65913524 | None:intergenic | 20.0% |
| !!! | TAAATTTGTCGTACATATTT+TGG | - | chr1.1:65913678-65913697 | MS.gene02970:intron | 20.0% |
| !!! | TACTAATAATTTTACCTTCA+TGG | + | chr1.1:65912304-65912323 | None:intergenic | 20.0% |
| !!! | TATCTAATAATATCTGGTTT+TGG | + | chr1.1:65912430-65912449 | None:intergenic | 20.0% |
| ! | AGATGTAGAAATTCCTATTT+GGG | + | chr1.1:65913113-65913132 | None:intergenic | 25.0% |
| ! | ATAGCTGTAAATTTGATCAT+TGG | - | chr1.1:65913788-65913807 | MS.gene02970:intron | 25.0% |
| ! | CTCTGATATCTAATAATATC+TGG | + | chr1.1:65912436-65912455 | None:intergenic | 25.0% |
| ! | GAATATTACTATATCAGTCA+TGG | - | chr1.1:65912759-65912778 | MS.gene02970:intron | 25.0% |
| ! | GATGAATTTAACCTAAGATT+TGG | + | chr1.1:65912460-65912479 | None:intergenic | 25.0% |
| ! | TAGCTGTAAATTTGATCATT+GGG | - | chr1.1:65913789-65913808 | MS.gene02970:intron | 25.0% |
| ! | TCTTGAAAAAAATCAAGCAA+AGG | + | chr1.1:65913141-65913160 | None:intergenic | 25.0% |
| ! | TTTCTCTTAAAATTTGAGCT+AGG | + | chr1.1:65914481-65914500 | None:intergenic | 25.0% |
| !! | AATATGTTTTCCATGACAAT+TGG | - | chr1.1:65914255-65914274 | MS.gene02970:CDS | 25.0% |
| !! | ACTTATGTTGCTAAATCTTT+TGG | - | chr1.1:65912817-65912836 | MS.gene02970:intron | 25.0% |
| !! | GAACAGTAATTTTTGAACTA+AGG | + | chr1.1:65913170-65913189 | None:intergenic | 25.0% |
| !! | TATTCTACCTACCTTTTTAA+AGG | + | chr1.1:65914239-65914258 | None:intergenic | 25.0% |
| !!! | AGGGAATCAAGTTTTATTTT+TGG | - | chr1.1:65914514-65914533 | MS.gene02970:intron | 25.0% |
| !!! | GGGAATCAAGTTTTATTTTT+GGG | - | chr1.1:65914515-65914534 | MS.gene02970:intron | 25.0% |
| !!! | TTCTTTTTCTTTTTTCGTGA+TGG | + | chr1.1:65914695-65914714 | None:intergenic | 25.0% |
| AAAAGAAAAAGAAAGTAGCC+AGG | - | chr1.1:65914702-65914721 | MS.gene02970:intron | 30.0% | |
| AAAGAAAAAGAAAGTAGCCA+GGG | - | chr1.1:65914703-65914722 | MS.gene02970:intron | 30.0% | |
| AGAGAAATAATCATCAGATG+AGG | - | chr1.1:65914494-65914513 | MS.gene02970:intron | 30.0% | |
| AGAGAATGCAATGATATTTG+AGG | + | chr1.1:65913084-65913103 | None:intergenic | 30.0% | |
| AGGCAACAAATACAAAAATC+AGG | - | chr1.1:65913906-65913925 | MS.gene02970:intron | 30.0% | |
| AGTAGAATGCTTGAATTGAA+AGG | - | chr1.1:65912673-65912692 | MS.gene02970:CDS | 30.0% | |
| CTGTAAAACAAATGGATCAT+TGG | - | chr1.1:65914362-65914381 | MS.gene02970:CDS | 30.0% | |
| GAGAAATAATCATCAGATGA+GGG | - | chr1.1:65914495-65914514 | MS.gene02970:intron | 30.0% | |
| GAGATGTAGAAATTCCTATT+TGG | + | chr1.1:65913114-65913133 | None:intergenic | 30.0% | |
| GATTCAGAAACTTACTTTGA+TGG | - | chr1.1:65912248-65912267 | MS.gene02970:CDS | 30.0% | |
| GCTGAATATAAATGAAGTAG+AGG | - | chr1.1:65914166-65914185 | MS.gene02970:CDS | 30.0% | |
| TACGCAAAATATGCTGTTAT+AGG | - | chr1.1:65914297-65914316 | MS.gene02970:CDS | 30.0% | |
| TCAAGCATTCTACTAATACA+TGG | + | chr1.1:65912667-65912686 | None:intergenic | 30.0% | |
| TCTATCCTCTGTAAAACAAA+TGG | - | chr1.1:65914354-65914373 | MS.gene02970:CDS | 30.0% | |
| TGAGGAAATGATTCAAAAAG+TGG | - | chr1.1:65915072-65915091 | MS.gene02970:intron | 30.0% | |
| TTTGTTTCCTTCATATGATG+TGG | - | chr1.1:65914444-65914463 | MS.gene02970:CDS | 30.0% | |
| ! | ACTTTTGCTGAAAATCTACA+TGG | - | chr1.1:65914139-65914158 | MS.gene02970:CDS | 30.0% |
| ! | ATGTTAAAGCTTTATCATGC+AGG | + | chr1.1:65913569-65913588 | None:intergenic | 30.0% |
| ! | ATTTTGCGTATGTCAAATTC+AGG | + | chr1.1:65914287-65914306 | None:intergenic | 30.0% |
| !! | GAGAGCTTTTACTCTAAAAA+TGG | - | chr1.1:65914388-65914407 | MS.gene02970:CDS | 30.0% |
| !! | TACCTACCTTTTTAAAGGAA+CGG | + | chr1.1:65914234-65914253 | None:intergenic | 30.0% |
| !!! | ATGATCCATTTGTTTTACAG+AGG | + | chr1.1:65914362-65914381 | None:intergenic | 30.0% |
| !!! | TTTCTTTTTTCGTGATGGAT+TGG | + | chr1.1:65914690-65914709 | None:intergenic | 30.0% |
| AAAACAGAGTCACATGCATA+TGG | + | chr1.1:65913842-65913861 | None:intergenic | 35.0% | |
| AAACAGAGTCACATGCATAT+GGG | + | chr1.1:65913841-65913860 | None:intergenic | 35.0% | |
| AAAGATGGGATTGAAAGATG+AGG | - | chr1.1:65915054-65915073 | MS.gene02970:intron | 35.0% | |
| AAATGGTCAAGTCACGTTTA+TGG | - | chr1.1:65913194-65913213 | MS.gene02970:CDS | 35.0% | |
| AACAATATTCAGGGACTTCT+TGG | - | chr1.1:65913405-65913424 | MS.gene02970:intron | 35.0% | |
| AATGGTCAAGTCACGTTTAT+GGG | - | chr1.1:65913195-65913214 | MS.gene02970:CDS | 35.0% | |
| ACTCAATCCACATCATATGA+AGG | + | chr1.1:65914454-65914473 | None:intergenic | 35.0% | |
| ATCTCAAGAATATGCCATGA+AGG | - | chr1.1:65912287-65912306 | MS.gene02970:CDS | 35.0% | |
| ATGATAGGGTTGTCAACAAT+TGG | - | chr1.1:65912390-65912409 | MS.gene02970:CDS | 35.0% | |
| ATTCTCTCATCTACCCAAAT+AGG | - | chr1.1:65913097-65913116 | MS.gene02970:intron | 35.0% | |
| CAAATACTGTGATCACTGTA+TGG | + | chr1.1:65914605-65914624 | None:intergenic | 35.0% | |
| CACATGAAATCCTTCTGTTT+GGG | - | chr1.1:65913363-65913382 | MS.gene02970:intron | 35.0% | |
| GATATCAGAGTCCAAATCTT+AGG | - | chr1.1:65912446-65912465 | MS.gene02970:CDS | 35.0% | |
| GTCAATCTATTGATCAACAC+CGG | - | chr1.1:65913441-65913460 | MS.gene02970:intron | 35.0% | |
| GTTAACATAAGCAAGAATGC+TGG | - | chr1.1:65915031-65915050 | MS.gene02970:intron | 35.0% | |
| GTTCTTTCACTGAAGAAATC+AGG | - | chr1.1:65914815-65914834 | MS.gene02970:intron | 35.0% | |
| TCACATGAAATCCTTCTGTT+TGG | - | chr1.1:65913362-65913381 | MS.gene02970:intron | 35.0% | |
| TCACTAGGTATGTACATATG+TGG | - | chr1.1:65913319-65913338 | MS.gene02970:intron | 35.0% | |
| TGTACATACCTAGTGAAGTA+TGG | + | chr1.1:65913315-65913334 | None:intergenic | 35.0% | |
| TGTAGAGTGAATATCCAATG+CGG | + | chr1.1:65914207-65914226 | None:intergenic | 35.0% | |
| TTCATGGCATATTCTTGAGA+TGG | + | chr1.1:65912288-65912307 | None:intergenic | 35.0% | |
| ! | CATATGATGTGGATTGAGTT+AGG | - | chr1.1:65914455-65914474 | MS.gene02970:CDS | 35.0% |
| ! | GAATTGAACCACTCTTTTGA+TGG | + | chr1.1:65912499-65912518 | None:intergenic | 35.0% |
| !! | CTGCAAAGTTTTATCATGCT+CGG | + | chr1.1:65912965-65912984 | None:intergenic | 35.0% |
| !! | TATTTCAGCTCTAAAGCCAA+CGG | - | chr1.1:65912540-65912559 | MS.gene02970:CDS | 35.0% |
| AAGACCTTAGACGCACAAAA+GGG | + | chr1.1:65914944-65914963 | None:intergenic | 40.0% | |
| AAGCAAGAATGCTGGAAAGA+TGG | - | chr1.1:65915039-65915058 | MS.gene02970:intron | 40.0% | |
| AGAGAATTGTGTAAGGAGCT+CGG | + | chr1.1:65914852-65914871 | None:intergenic | 40.0% | |
| AGCAAGAATGCTGGAAAGAT+GGG | - | chr1.1:65915040-65915059 | MS.gene02970:intron | 40.0% | |
| AGTGTATTGTCTGATACTGG+AGG | - | chr1.1:65913535-65913554 | MS.gene02970:intron | 40.0% | |
| CAAGAATGCCATCAAAAGAG+TGG | - | chr1.1:65912488-65912507 | MS.gene02970:CDS | 40.0% | |
| CCAACGGTTATTGATGTACA+AGG | - | chr1.1:65912556-65912575 | MS.gene02970:CDS | 40.0% | |
| CCTTGTACATCAATAACCGT+TGG | + | chr1.1:65912559-65912578 | None:intergenic | 40.0% | |
| GACAAAGTAACCCAAACAGA+AGG | + | chr1.1:65913376-65913395 | None:intergenic | 40.0% | |
| GACAATCCTCTACATATCAC+CGG | + | chr1.1:65912787-65912806 | None:intergenic | 40.0% | |
| GCACATGAGACTATCAACAA+TGG | + | chr1.1:65914580-65914599 | None:intergenic | 40.0% | |
| GCGTAACTTCAAAGGTTTGT+CGG | + | chr1.1:65914031-65914050 | None:intergenic | 40.0% | |
| GTAGAGTGAATATCCAATGC+GGG | + | chr1.1:65914206-65914225 | None:intergenic | 40.0% | |
| GTATCAAAACGCACACATAC+AGG | - | chr1.1:65913267-65913286 | MS.gene02970:intron | 40.0% | |
| GTTTGTCGGAAACTTAGTTC+AGG | + | chr1.1:65914017-65914036 | None:intergenic | 40.0% | |
| TACTATATCAGTCATGGTGC+CGG | - | chr1.1:65912765-65912784 | MS.gene02970:intron | 40.0% | |
| TAGAGTGAATATCCAATGCG+GGG | + | chr1.1:65914205-65914224 | None:intergenic | 40.0% | |
| TATCAGCCATCAAGAACAGA+AGG | + | chr1.1:65914772-65914791 | None:intergenic | 40.0% | |
| TCGAGTGTATTGTCTGATAC+TGG | - | chr1.1:65913532-65913551 | MS.gene02970:intron | 40.0% | |
| TGCTGAAAATCTACATGGAC+AGG | - | chr1.1:65914144-65914163 | MS.gene02970:CDS | 40.0% | |
| TGCTTGTTCCATACTTCACT+AGG | - | chr1.1:65913304-65913323 | MS.gene02970:intron | 40.0% | |
| TTCACTGAAGAAATCAGGTC+CGG | - | chr1.1:65914820-65914839 | MS.gene02970:intron | 40.0% | |
| TTGCGTATGTCAAATTCAGG+AGG | + | chr1.1:65914284-65914303 | None:intergenic | 40.0% | |
| TTGGGGAGTAAATAAGCTGA+GGG | - | chr1.1:65915000-65915019 | MS.gene02970:intron | 40.0% | |
| ! | AAGCTGAAAAGTACAGTGCT+TGG | + | chr1.1:65912922-65912941 | None:intergenic | 40.0% |
| ! | AGCACTGTACTTTTCAGCTT+TGG | - | chr1.1:65912922-65912941 | MS.gene02970:intron | 40.0% |
| ! | CACTGACCGTTCCTTTAAAA+AGG | - | chr1.1:65914225-65914244 | MS.gene02970:CDS | 40.0% |
| ! | CTTACTTTGATGGCTTCTCA+TGG | - | chr1.1:65912258-65912277 | MS.gene02970:CDS | 40.0% |
| ! | GACCGTTCCTTTAAAAAGGT+AGG | - | chr1.1:65914229-65914248 | MS.gene02970:CDS | 40.0% |
| ! | GCTTTGTTGTCTGACTTGAT+GGG | - | chr1.1:65913033-65913052 | MS.gene02970:intron | 40.0% |
| ! | TGTTCTTGATGGCTGATAAG+AGG | - | chr1.1:65914774-65914793 | MS.gene02970:intron | 40.0% |
| !! | AGCTTTGTTGTCTGACTTGA+TGG | - | chr1.1:65913032-65913051 | MS.gene02970:intron | 40.0% |
| !! | GGATTGGCTTTGACTTTCTT+CGG | + | chr1.1:65914674-65914693 | None:intergenic | 40.0% |
| !! | TGATGGGTTTGCAACTATCA+GGG | - | chr1.1:65913049-65913068 | MS.gene02970:intron | 40.0% |
| !! | TGGGCTTATTTGGCTTTCTT+GGG | - | chr1.1:65914982-65915001 | MS.gene02970:CDS | 40.0% |
| !! | TTGATGGGTTTGCAACTATC+AGG | - | chr1.1:65913048-65913067 | MS.gene02970:intron | 40.0% |
| !! | TTGGGCTTATTTGGCTTTCT+TGG | - | chr1.1:65914981-65915000 | MS.gene02970:CDS | 40.0% |
| !!! | TCTGGTTTTGGTGCATAACA+AGG | + | chr1.1:65912418-65912437 | None:intergenic | 40.0% |
| AAAAGAAAGTAGCCAGGGAG+AGG | - | chr1.1:65914708-65914727 | MS.gene02970:intron | 45.0% | |
| AAAGAAAGTAGCCAGGGAGA+GGG | - | chr1.1:65914709-65914728 | MS.gene02970:intron | 45.0% | |
| AAGGTCTTCAACACAGGGTT+GGG | - | chr1.1:65914956-65914975 | MS.gene02970:CDS | 45.0% | |
| AGACCTTAGACGCACAAAAG+GGG | + | chr1.1:65914943-65914962 | None:intergenic | 45.0% | |
| AGAGTGAATATCCAATGCGG+GGG | + | chr1.1:65914204-65914223 | None:intergenic | 45.0% | |
| AGTCACATGCATATGGGATC+AGG | + | chr1.1:65913835-65913854 | None:intergenic | 45.0% | |
| CATGTTACTCTTGTCTTGCC+AGG | - | chr1.1:65913723-65913742 | MS.gene02970:intron | 45.0% | |
| CTCCTTACACAATTCTCTGC+TGG | - | chr1.1:65914854-65914873 | MS.gene02970:CDS | 45.0% | |
| CTTGGGGAGTAAATAAGCTG+AGG | - | chr1.1:65914999-65915018 | MS.gene02970:intron | 45.0% | |
| GAAGACCTTAGACGCACAAA+AGG | + | chr1.1:65914945-65914964 | None:intergenic | 45.0% | |
| GAGAATTGTGTAAGGAGCTC+GGG | + | chr1.1:65914851-65914870 | None:intergenic | 45.0% | |
| GCACGTATGCGTAACTTCAA+AGG | + | chr1.1:65914039-65914058 | None:intergenic | 45.0% | |
| GGACTCACTATGCAAGAACA+AGG | + | chr1.1:65913991-65914010 | None:intergenic | 45.0% | |
| TAAGGTCTTCAACACAGGGT+TGG | - | chr1.1:65914955-65914974 | MS.gene02970:CDS | 45.0% | |
| TCACTATGCAAGAACAAGGC+AGG | + | chr1.1:65913987-65914006 | None:intergenic | 45.0% | |
| TCGGAAACTTAGTTCAGGCA+GGG | + | chr1.1:65914012-65914031 | None:intergenic | 45.0% | |
| TGAGAGCCTTCTGTTCTTGA+TGG | - | chr1.1:65914763-65914782 | MS.gene02970:intron | 45.0% | |
| TGCCAGCAGAGAATTGTGTA+AGG | + | chr1.1:65914859-65914878 | None:intergenic | 45.0% | |
| ! | CGTCTAAGGTCTTCAACACA+GGG | - | chr1.1:65914951-65914970 | MS.gene02970:CDS | 45.0% |
| ! | GTGATCTGCAAACTAGCTTG+CGG | - | chr1.1:65914911-65914930 | MS.gene02970:CDS | 45.0% |
| ! | TCAACACAGGGTTGGGTTTT+GGG | - | chr1.1:65914963-65914982 | MS.gene02970:CDS | 45.0% |
| ! | TTCAACACAGGGTTGGGTTT+TGG | - | chr1.1:65914962-65914981 | MS.gene02970:CDS | 45.0% |
| !! | CAGGAGTGCTGTGTTAGTTT+GGG | - | chr1.1:65913742-65913761 | MS.gene02970:intron | 45.0% |
| !! | GGGCTTATTTGGCTTTCTTG+GGG | - | chr1.1:65914983-65915002 | MS.gene02970:CDS | 45.0% |
| !!! | GGTTGGGTTTTGGGCTTATT+TGG | - | chr1.1:65914972-65914991 | MS.gene02970:CDS | 45.0% |
| ACTGCTGAAGCAGGTGTAGA+TGG | - | chr1.1:65913000-65913019 | MS.gene02970:intron | 50.0% | |
| CAATTCTCTGCTGGCATTGC+TGG | - | chr1.1:65914863-65914882 | MS.gene02970:CDS | 50.0% | |
| CAGGAGGAAGCCAATTGTCA+TGG | + | chr1.1:65914268-65914287 | None:intergenic | 50.0% | |
| CCAAACTAACACAGCACTCC+TGG | + | chr1.1:65913744-65913763 | None:intergenic | 50.0% | |
| GACCTTAGACGCACAAAAGG+GGG | + | chr1.1:65914942-65914961 | None:intergenic | 50.0% | |
| GTCGGAAACTTAGTTCAGGC+AGG | + | chr1.1:65914013-65914032 | None:intergenic | 50.0% | |
| TCACAGATAGCACGACAGCA+AGG | + | chr1.1:65914895-65914914 | None:intergenic | 50.0% | |
| TGCTAGTAGTGGCAGTGCTA+AGG | - | chr1.1:65915134-65915153 | MS.gene02970:CDS | 50.0% | |
| ! | ACATCTGAGACTGCTGAAGC+AGG | - | chr1.1:65912991-65913010 | MS.gene02970:intron | 50.0% |
| ! | CTGCAAACTAGCTTGCGGAA+GGG | - | chr1.1:65914916-65914935 | MS.gene02970:CDS | 50.0% |
| ! | GCGTCTAAGGTCTTCAACAC+AGG | - | chr1.1:65914950-65914969 | MS.gene02970:CDS | 50.0% |
| ! | TCTGCAAACTAGCTTGCGGA+AGG | - | chr1.1:65914915-65914934 | MS.gene02970:CDS | 50.0% |
| !! | ATGGTGCCGGTGATATGTAG+AGG | - | chr1.1:65912778-65912797 | MS.gene02970:intron | 50.0% |
| !! | CCAGGAGTGCTGTGTTAGTT+TGG | - | chr1.1:65913741-65913760 | MS.gene02970:intron | 50.0% |
| !! | TGGCTGATAAGAGGCATCGT+CGG | - | chr1.1:65914783-65914802 | MS.gene02970:intron | 50.0% |
| AGCTGCAGCGTTGCTAGTAG+TGG | - | chr1.1:65915123-65915142 | MS.gene02970:CDS | 55.0% | |
| CAATGCGGGGGAAATGCTTC+TGG | + | chr1.1:65914192-65914211 | None:intergenic | 55.0% | |
| CTTGAACAGATCCCTCTCCC+TGG | + | chr1.1:65914723-65914742 | None:intergenic | 55.0% | |
| TCTGCTGGCATTGCTGGTAC+TGG | - | chr1.1:65914869-65914888 | MS.gene02970:CDS | 55.0% | |
| !! | CAGAAGCATTTCCCCCGCAT+TGG | - | chr1.1:65914190-65914209 | MS.gene02970:CDS | 55.0% |
| !! | GGCTGATAAGAGGCATCGTC+GGG | - | chr1.1:65914784-65914803 | MS.gene02970:intron | 55.0% |
| AGCGCGCGAACAGTGAGCAA+CGG | - | chr1.1:65913643-65913662 | MS.gene02970:intron | 60.0% | |
| GCTCACTGTTCGCGCGCTTA+TGG | + | chr1.1:65913641-65913660 | None:intergenic | 60.0% | |
| GTAAGGAGCTCGGGAAGCTC+CGG | + | chr1.1:65914842-65914861 | None:intergenic | 60.0% | |
| ! | GGCCCCCTTTTGTGCGTCTA+AGG | - | chr1.1:65914937-65914956 | MS.gene02970:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 65912243 | 65915165 | 65912243 | ID=MS.gene02970 |
| chr1.1 | mRNA | 65912243 | 65915165 | 65912243 | ID=MS.gene02970.t1;Parent=MS.gene02970 |
| chr1.1 | exon | 65915100 | 65915165 | 65915100 | ID=MS.gene02970.t1.exon1;Parent=MS.gene02970.t1 |
| chr1.1 | CDS | 65915100 | 65915165 | 65915100 | ID=cds.MS.gene02970.t1;Parent=MS.gene02970.t1 |
| chr1.1 | exon | 65914831 | 65915011 | 65914831 | ID=MS.gene02970.t1.exon2;Parent=MS.gene02970.t1 |
| chr1.1 | CDS | 65914831 | 65915011 | 65914831 | ID=cds.MS.gene02970.t1;Parent=MS.gene02970.t1 |
| chr1.1 | exon | 65914083 | 65914497 | 65914083 | ID=MS.gene02970.t1.exon3;Parent=MS.gene02970.t1 |
| chr1.1 | CDS | 65914083 | 65914497 | 65914083 | ID=cds.MS.gene02970.t1;Parent=MS.gene02970.t1 |
| chr1.1 | exon | 65913162 | 65913242 | 65913162 | ID=MS.gene02970.t1.exon4;Parent=MS.gene02970.t1 |
| chr1.1 | CDS | 65913162 | 65913242 | 65913162 | ID=cds.MS.gene02970.t1;Parent=MS.gene02970.t1 |
| chr1.1 | exon | 65912243 | 65912738 | 65912243 | ID=MS.gene02970.t1.exon5;Parent=MS.gene02970.t1 |
| chr1.1 | CDS | 65912243 | 65912738 | 65912243 | ID=cds.MS.gene02970.t1;Parent=MS.gene02970.t1 |
| Gene Sequence |
| Protein sequence |
