AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21571


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21571.t1 MTR_1g089980 92.231 399 30 1 1 398 1 399 0.0 743
MS.gene21571.t1 MTR_7g094470 57.656 418 169 3 2 412 1 417 1.76e-166 473
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21571.t1 AT4G02920 37.674 430 232 11 5 412 3 418 8.40e-83 260
MS.gene21571.t1 AT4G02920 37.915 422 241 10 5 412 3 417 1.81e-82 259
MS.gene21571.t1 AT1G03340 34.722 360 200 8 56 412 58 385 1.54e-53 183

Find 78 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAACACAGGGTTGGGTTT+TGG 0.134883 1.3:-62942381 MS.gene21571:CDS
TTGGGCTTATTTGGCTTTCT+TGG 0.139996 1.3:-62942362 MS.gene21571:CDS
GAGATGTAGAAATTCCTATT+TGG 0.209369 1.3:+62944232 None:intergenic
AAATGGTCAAGTCACGTTTA+TGG 0.221667 1.3:-62944149 MS.gene21571:CDS
CACTGACCGTTCCTTTAAAA+AGG 0.233508 1.3:-62943118 MS.gene21571:intron
AAAATTACTGTTCATCTAAA+TGG 0.237725 1.3:-62944166 MS.gene21571:CDS
TTGATGGGTTTGCAACTATC+AGG 0.248405 1.3:-62944295 MS.gene21571:CDS
TGGGCTTATTTGGCTTTCTT+GGG 0.252384 1.3:-62942361 MS.gene21571:CDS
GATATCAGAGTCCAAATCTT+AGG 0.281870 1.3:-62944897 MS.gene21571:CDS
GATGAATTTAACCTAAGATT+TGG 0.287708 1.3:+62944886 None:intergenic
TGAGAGCCTTCTGTTCTTGA+TGG 0.290630 1.3:-62942580 MS.gene21571:CDS
GATTCAGAAACTTACTTTGA+TGG 0.292699 1.3:-62945095 MS.gene21571:CDS
CAATTCTCTGCTGGCATTGC+TGG 0.299676 1.3:-62942480 MS.gene21571:CDS
ATTCTCTCATCTACCCAAAT+AGG 0.325349 1.3:-62944246 MS.gene21571:CDS
CTCTGATATCTAATAATATC+TGG 0.353756 1.3:+62944910 None:intergenic
GGATTGGCTTTGACTTTCTT+CGG 0.356219 1.3:+62942672 None:intergenic
TATCTAATAATATCTGGTTT+TGG 0.360696 1.3:+62944916 None:intergenic
AGCTTTGTTGTCTGACTTGA+TGG 0.364159 1.3:-62944311 MS.gene21571:CDS
AATGGTCAAGTCACGTTTAT+GGG 0.369340 1.3:-62944148 MS.gene21571:CDS
GTTCTTTCACTGAAGAAATC+AGG 0.382585 1.3:-62942528 MS.gene21571:CDS
AGATGTAGAAATTCCTATTT+GGG 0.383642 1.3:+62944233 None:intergenic
TCTGCTGGCATTGCTGGTAC+TGG 0.385638 1.3:-62942474 MS.gene21571:CDS
AAGGTCTTCAACACAGGGTT+GGG 0.391495 1.3:-62942387 MS.gene21571:CDS
ATGATAGGGTTGTCAACAAT+TGG 0.402315 1.3:-62944953 MS.gene21571:intron
TGTACATACCTAGTGAAGTA+TGG 0.405041 1.3:+62944031 None:intergenic
AAGCAAGAATGCTGGAAAGA+TGG 0.436409 1.3:-62942304 MS.gene21571:CDS
AGAGAATGCAATGATATTTG+AGG 0.446652 1.3:+62944262 None:intergenic
AGCAAGAATGCTGGAAAGAT+GGG 0.449740 1.3:-62942303 MS.gene21571:CDS
TGTTCTTGATGGCTGATAAG+AGG 0.453397 1.3:-62942569 MS.gene21571:CDS
GAGAATTGTGTAAGGAGCTC+GGG 0.454630 1.3:+62942495 None:intergenic
GAAGACCTTAGACGCACAAA+AGG 0.465886 1.3:+62942401 None:intergenic
ACTGCTGAAGCAGGTGTAGA+TGG 0.468818 1.3:-62944343 MS.gene21571:CDS
GCGTCTAAGGTCTTCAACAC+AGG 0.476430 1.3:-62942393 MS.gene21571:CDS
CTTACTTTGATGGCTTCTCA+TGG 0.481501 1.3:-62945085 MS.gene21571:CDS
GGCTGATAAGAGGCATCGTC+GGG 0.482476 1.3:-62942559 MS.gene21571:CDS
TTCACTGAAGAAATCAGGTC+CGG 0.487415 1.3:-62942523 MS.gene21571:CDS
TGCTAGTAGTGGCAGTGCTA+AGG 0.499557 1.3:-62942209 MS.gene21571:CDS
CTCCTTACACAATTCTCTGC+TGG 0.505017 1.3:-62942489 MS.gene21571:CDS
GGGCTTATTTGGCTTTCTTG+GGG 0.508276 1.3:-62942360 MS.gene21571:CDS
GTAAGGAGCTCGGGAAGCTC+CGG 0.511742 1.3:+62942504 None:intergenic
GTATCAAAACGCACACATAC+AGG 0.515015 1.3:-62944076 MS.gene21571:CDS
AAGACCTTAGACGCACAAAA+GGG 0.516732 1.3:+62942402 None:intergenic
TTCATGGCATATTCTTGAGA+TGG 0.519316 1.3:+62945058 None:intergenic
AAGCTGAAAAGTACAGTGCT+TGG 0.520108 1.3:+62944424 None:intergenic
TAAGGTCTTCAACACAGGGT+TGG 0.534621 1.3:-62942388 MS.gene21571:CDS
AGAGAATTGTGTAAGGAGCT+CGG 0.542826 1.3:+62942494 None:intergenic
GTAGAGTGAATATCCAATGC+GGG 0.543199 1.3:+62943140 None:intergenic
AAAAGAAAGTAGCCAGGGAG+AGG 0.544026 1.3:-62942635 MS.gene21571:CDS
ATCTCAAGAATATGCCATGA+AGG 0.545054 1.3:-62945056 MS.gene21571:intron
CTTGAACAGATCCCTCTCCC+TGG 0.545602 1.3:+62942623 None:intergenic
ACATCTGAGACTGCTGAAGC+AGG 0.548211 1.3:-62944352 MS.gene21571:CDS
AGCTGCAGCGTTGCTAGTAG+TGG 0.549465 1.3:-62942220 MS.gene21571:CDS
GTTAACATAAGCAAGAATGC+TGG 0.550226 1.3:-62942312 MS.gene21571:CDS
TGATGGGTTTGCAACTATCA+GGG 0.550930 1.3:-62944294 MS.gene21571:CDS
CCAACGGTTATTGATGTACA+AGG 0.561376 1.3:-62944787 MS.gene21571:intron
GCTTTGTTGTCTGACTTGAT+GGG 0.563096 1.3:-62944310 MS.gene21571:CDS
CCTTGTACATCAATAACCGT+TGG 0.573161 1.3:+62944787 None:intergenic
TGCCAGCAGAGAATTGTGTA+AGG 0.578242 1.3:+62942487 None:intergenic
GCTGAATATAAATGAAGTAG+AGG 0.580301 1.3:-62943177 MS.gene21571:CDS
TGGCTGATAAGAGGCATCGT+CGG 0.580551 1.3:-62942560 MS.gene21571:CDS
CTTGGGGAGTAAATAAGCTG+AGG 0.580784 1.3:-62942344 MS.gene21571:CDS
TATCAGCCATCAAGAACAGA+AGG 0.589403 1.3:+62942574 None:intergenic
TATTTCAGCTCTAAAGCCAA+CGG 0.594762 1.3:-62944803 MS.gene21571:CDS
TGCTTGTTCCATACTTCACT+AGG 0.596244 1.3:-62944039 MS.gene21571:intron
AAAGAAAGTAGCCAGGGAGA+GGG 0.598067 1.3:-62942634 MS.gene21571:CDS
GACCTTAGACGCACAAAAGG+GGG 0.599512 1.3:+62942404 None:intergenic
CAAGAATGCCATCAAAAGAG+TGG 0.606435 1.3:-62944855 MS.gene21571:CDS
CGTCTAAGGTCTTCAACACA+GGG 0.609157 1.3:-62942392 MS.gene21571:CDS
TCTGCAAACTAGCTTGCGGA+AGG 0.611580 1.3:-62942428 MS.gene21571:CDS
TTGGGGAGTAAATAAGCTGA+GGG 0.614442 1.3:-62942343 MS.gene21571:CDS
AAAGATGGGATTGAAAGATG+AGG 0.631344 1.3:-62942289 MS.gene21571:CDS
GTGATCTGCAAACTAGCTTG+CGG 0.634286 1.3:-62942432 MS.gene21571:CDS
AGACCTTAGACGCACAAAAG+GGG 0.635020 1.3:+62942403 None:intergenic
TAGAGTGAATATCCAATGCG+GGG 0.642303 1.3:+62943141 None:intergenic
CTGCAAACTAGCTTGCGGAA+GGG 0.661355 1.3:-62942427 MS.gene21571:CDS
TCACAGATAGCACGACAGCA+AGG 0.673650 1.3:+62942451 None:intergenic
TGTAGAGTGAATATCCAATG+CGG 0.714818 1.3:+62943139 None:intergenic
AGAGTGAATATCCAATGCGG+GGG 0.722783 1.3:+62943142 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTATATTTATAATTAAATC+CGG + chr1.3:62943420-62943439 None:intergenic 10.0%
!!! TGAATTTTTTTTTTATGATA+GGG - chr1.3:62942333-62942352 MS.gene21571:CDS 10.0%
!!! TTGAATTTTTTTTTTATGAT+AGG - chr1.3:62942332-62942351 MS.gene21571:CDS 10.0%
!! AAAATGCATAAAATTAAAGT+CGG + chr1.3:62944384-62944403 None:intergenic 15.0%
!! ATAATAGAAAACAATATTCA+GGG - chr1.3:62943353-62943372 MS.gene21571:intron 15.0%
!! TAACATCAAATTTAAAAACT+TGG - chr1.3:62943436-62943455 MS.gene21571:intron 15.0%
!! TATACACAAATTCAATAAAT+TGG + chr1.3:62942546-62942565 None:intergenic 15.0%
!!! ATATTTTGATTATACAATGT+TGG - chr1.3:62942573-62942592 MS.gene21571:CDS 15.0%
!! AAAATTACTGTTCATCTAAA+TGG - chr1.3:62943134-62943153 MS.gene21571:CDS 20.0%
!! AAATGCATAAAATTAAAGTC+GGG + chr1.3:62944383-62944402 None:intergenic 20.0%
!! CAAGAATAGAATATTGAATA+TGG + chr1.3:62944054-62944073 None:intergenic 20.0%
!! CATAATAGAAAACAATATTC+AGG - chr1.3:62943352-62943371 MS.gene21571:intron 20.0%
!! CTCATAAAAAATATACAACA+TGG + chr1.3:62942666-62942685 None:intergenic 20.0%
!! GTTAAAGTAGTAAAAATCAA+TGG - chr1.3:62943918-62943937 MS.gene21571:intron 20.0%
!! TGTGATCAATTGAATTTAAA+CGG + chr1.3:62943304-62943323 None:intergenic 20.0%
!! TTTATCGAATTTATCTAACT+AGG - chr1.3:62943843-62943862 MS.gene21571:intron 20.0%
!!! AACAGTAATTTTTGAACTAA+GGG + chr1.3:62943126-62943145 None:intergenic 20.0%
!!! AAGTAATGTAACTTATCTTT+TGG - chr1.3:62942839-62942858 MS.gene21571:intron 20.0%
!!! CACATTTAAAAATGCATTTT+TGG + chr1.3:62943462-62943481 None:intergenic 20.0%
!!! TAAATTTGTCGTACATATTT+TGG - chr1.3:62943635-62943654 MS.gene21571:intron 20.0%
!!! TACTAATAATTTTACCTTCA+TGG + chr1.3:62942261-62942280 None:intergenic 20.0%
!!! TATCTAATAATATCTGGTTT+TGG + chr1.3:62942387-62942406 None:intergenic 20.0%
! AGATGTAGAAATTCCTATTT+GGG + chr1.3:62943070-62943089 None:intergenic 25.0%
! ATAGCTGTAAATTTGATCAT+TGG - chr1.3:62943745-62943764 MS.gene21571:intron 25.0%
! CTCTGATATCTAATAATATC+TGG + chr1.3:62942393-62942412 None:intergenic 25.0%
! GAATATTACTATATCAGTCA+TGG - chr1.3:62942716-62942735 MS.gene21571:intron 25.0%
! GATGAATTTAACCTAAGATT+TGG + chr1.3:62942417-62942436 None:intergenic 25.0%
! TAGCTGTAAATTTGATCATT+GGG - chr1.3:62943746-62943765 MS.gene21571:intron 25.0%
! TCTTGAAAAAAATCAAGCAA+AGG + chr1.3:62943098-62943117 None:intergenic 25.0%
! TTTCTCTTAAAATTTGAGCT+AGG + chr1.3:62944438-62944457 None:intergenic 25.0%
!! AATATGTTTTCCATGACAAT+TGG - chr1.3:62944212-62944231 MS.gene21571:CDS 25.0%
!! ACTTATGTTGCTAAATCTTT+TGG - chr1.3:62942774-62942793 MS.gene21571:intron 25.0%
!! GAACAGTAATTTTTGAACTA+AGG + chr1.3:62943127-62943146 None:intergenic 25.0%
!! TATTCTACCTACCTTTTTAA+AGG + chr1.3:62944196-62944215 None:intergenic 25.0%
!!! AGGGAATCAAGTTTTATTTT+TGG - chr1.3:62944471-62944490 MS.gene21571:intron 25.0%
!!! GGGAATCAAGTTTTATTTTT+GGG - chr1.3:62944472-62944491 MS.gene21571:intron 25.0%
!!! TTCTTTTTCTTTTTTCGTGA+TGG + chr1.3:62944652-62944671 None:intergenic 25.0%
AAAAGAAAAAGAAAGTAGCC+AGG - chr1.3:62944659-62944678 MS.gene21571:intron 30.0%
AAAGAAAAAGAAAGTAGCCA+GGG - chr1.3:62944660-62944679 MS.gene21571:intron 30.0%
AGAGAAATAATCATCAGATG+AGG - chr1.3:62944451-62944470 MS.gene21571:intron 30.0%
AGAGAATGCAATGATATTTG+AGG + chr1.3:62943041-62943060 None:intergenic 30.0%
AGGCAACAAATACAAAAATC+AGG - chr1.3:62943863-62943882 MS.gene21571:intron 30.0%
AGTAGAATGCTTGAATTGAA+AGG - chr1.3:62942630-62942649 MS.gene21571:CDS 30.0%
CTGTAAAACAAATGGATCAT+TGG - chr1.3:62944319-62944338 MS.gene21571:CDS 30.0%
GAGAAATAATCATCAGATGA+GGG - chr1.3:62944452-62944471 MS.gene21571:intron 30.0%
GAGATGTAGAAATTCCTATT+TGG + chr1.3:62943071-62943090 None:intergenic 30.0%
GATTCAGAAACTTACTTTGA+TGG - chr1.3:62942205-62942224 MS.gene21571:CDS 30.0%
GCTGAATATAAATGAAGTAG+AGG - chr1.3:62944123-62944142 MS.gene21571:CDS 30.0%
TACGCAAAATATGCTGTTAT+AGG - chr1.3:62944254-62944273 MS.gene21571:CDS 30.0%
TCAAGCATTCTACTAATACA+TGG + chr1.3:62942624-62942643 None:intergenic 30.0%
TCTATCCTCTGTAAAACAAA+TGG - chr1.3:62944311-62944330 MS.gene21571:CDS 30.0%
TGAGGAAATGATTCAAAAAG+TGG - chr1.3:62945029-62945048 MS.gene21571:intron 30.0%
TTTGTTTCCTTCATATGATG+TGG - chr1.3:62944401-62944420 MS.gene21571:CDS 30.0%
! ACTTTTGCTGAAAATCTACA+TGG - chr1.3:62944096-62944115 MS.gene21571:CDS 30.0%
! ATGTTAAAGCTTTATCATGC+AGG + chr1.3:62943526-62943545 None:intergenic 30.0%
! ATTTTGCGTATGTCAAATTC+AGG + chr1.3:62944244-62944263 None:intergenic 30.0%
!! GAGAGCTTTTACTCTAAAAA+TGG - chr1.3:62944345-62944364 MS.gene21571:CDS 30.0%
!! TACCTACCTTTTTAAAGGAA+CGG + chr1.3:62944191-62944210 None:intergenic 30.0%
!!! ATGATCCATTTGTTTTACAG+AGG + chr1.3:62944319-62944338 None:intergenic 30.0%
!!! TTTCTTTTTTCGTGATGGAT+TGG + chr1.3:62944647-62944666 None:intergenic 30.0%
AAAACAGAGTCACATGCATA+TGG + chr1.3:62943799-62943818 None:intergenic 35.0%
AAACAGAGTCACATGCATAT+GGG + chr1.3:62943798-62943817 None:intergenic 35.0%
AAAGATGGGATTGAAAGATG+AGG - chr1.3:62945011-62945030 MS.gene21571:intron 35.0%
AAATGGTCAAGTCACGTTTA+TGG - chr1.3:62943151-62943170 MS.gene21571:CDS 35.0%
AACAATATTCAGGGACTTCT+TGG - chr1.3:62943362-62943381 MS.gene21571:intron 35.0%
AATGGTCAAGTCACGTTTAT+GGG - chr1.3:62943152-62943171 MS.gene21571:CDS 35.0%
ACTCAATCCACATCATATGA+AGG + chr1.3:62944411-62944430 None:intergenic 35.0%
ATCTCAAGAATATGCCATGA+AGG - chr1.3:62942244-62942263 MS.gene21571:CDS 35.0%
ATGATAGGGTTGTCAACAAT+TGG - chr1.3:62942347-62942366 MS.gene21571:CDS 35.0%
ATTCTCTCATCTACCCAAAT+AGG - chr1.3:62943054-62943073 MS.gene21571:intron 35.0%
CAAATACTGTGATCACTGTA+TGG + chr1.3:62944562-62944581 None:intergenic 35.0%
CACATGAAATCCTTCTGTTT+GGG - chr1.3:62943320-62943339 MS.gene21571:intron 35.0%
GATATCAGAGTCCAAATCTT+AGG - chr1.3:62942403-62942422 MS.gene21571:CDS 35.0%
GTCAATCTATTGATCAACAC+CGG - chr1.3:62943398-62943417 MS.gene21571:intron 35.0%
GTTAACATAAGCAAGAATGC+TGG - chr1.3:62944988-62945007 MS.gene21571:intron 35.0%
GTTCTTTCACTGAAGAAATC+AGG - chr1.3:62944772-62944791 MS.gene21571:intron 35.0%
TCACATGAAATCCTTCTGTT+TGG - chr1.3:62943319-62943338 MS.gene21571:intron 35.0%
TCACTAGGTATGTACATATG+TGG - chr1.3:62943276-62943295 MS.gene21571:intron 35.0%
TGTACATACCTAGTGAAGTA+TGG + chr1.3:62943272-62943291 None:intergenic 35.0%
TGTAGAGTGAATATCCAATG+CGG + chr1.3:62944164-62944183 None:intergenic 35.0%
TTCATGGCATATTCTTGAGA+TGG + chr1.3:62942245-62942264 None:intergenic 35.0%
! CATATGATGTGGATTGAGTT+AGG - chr1.3:62944412-62944431 MS.gene21571:CDS 35.0%
! GAATTGAACCACTCTTTTGA+TGG + chr1.3:62942456-62942475 None:intergenic 35.0%
!! CTGCAAAGTTTTATCATGCT+CGG + chr1.3:62942922-62942941 None:intergenic 35.0%
!! TATTTCAGCTCTAAAGCCAA+CGG - chr1.3:62942497-62942516 MS.gene21571:CDS 35.0%
AAGACCTTAGACGCACAAAA+GGG + chr1.3:62944901-62944920 None:intergenic 40.0%
AAGCAAGAATGCTGGAAAGA+TGG - chr1.3:62944996-62945015 MS.gene21571:intron 40.0%
AGAGAATTGTGTAAGGAGCT+CGG + chr1.3:62944809-62944828 None:intergenic 40.0%
AGCAAGAATGCTGGAAAGAT+GGG - chr1.3:62944997-62945016 MS.gene21571:intron 40.0%
AGTGTATTGTCTGATACTGG+AGG - chr1.3:62943492-62943511 MS.gene21571:intron 40.0%
CAAGAATGCCATCAAAAGAG+TGG - chr1.3:62942445-62942464 MS.gene21571:CDS 40.0%
CCAACGGTTATTGATGTACA+AGG - chr1.3:62942513-62942532 MS.gene21571:CDS 40.0%
CCTTGTACATCAATAACCGT+TGG + chr1.3:62942516-62942535 None:intergenic 40.0%
GACAAAGTAACCCAAACAGA+AGG + chr1.3:62943333-62943352 None:intergenic 40.0%
GACAATCCTCTACATATCAC+CGG + chr1.3:62942744-62942763 None:intergenic 40.0%
GCACATGAGACTATCAACAA+TGG + chr1.3:62944537-62944556 None:intergenic 40.0%
GCGTAACTTCAAAGGTTTGT+CGG + chr1.3:62943988-62944007 None:intergenic 40.0%
GTAGAGTGAATATCCAATGC+GGG + chr1.3:62944163-62944182 None:intergenic 40.0%
GTATCAAAACGCACACATAC+AGG - chr1.3:62943224-62943243 MS.gene21571:intron 40.0%
GTTTGTCGGAAACTTAGTTC+AGG + chr1.3:62943974-62943993 None:intergenic 40.0%
TACTATATCAGTCATGGTGC+CGG - chr1.3:62942722-62942741 MS.gene21571:intron 40.0%
TAGAGTGAATATCCAATGCG+GGG + chr1.3:62944162-62944181 None:intergenic 40.0%
TATCAGCCATCAAGAACAGA+AGG + chr1.3:62944729-62944748 None:intergenic 40.0%
TCGAGTGTATTGTCTGATAC+TGG - chr1.3:62943489-62943508 MS.gene21571:intron 40.0%
TGCTGAAAATCTACATGGAC+AGG - chr1.3:62944101-62944120 MS.gene21571:CDS 40.0%
TGCTTGTTCCATACTTCACT+AGG - chr1.3:62943261-62943280 MS.gene21571:intron 40.0%
TTCACTGAAGAAATCAGGTC+CGG - chr1.3:62944777-62944796 MS.gene21571:intron 40.0%
TTGCGTATGTCAAATTCAGG+AGG + chr1.3:62944241-62944260 None:intergenic 40.0%
TTGGGGAGTAAATAAGCTGA+GGG - chr1.3:62944957-62944976 MS.gene21571:intron 40.0%
! AAGCTGAAAAGTACAGTGCT+TGG + chr1.3:62942879-62942898 None:intergenic 40.0%
! AGCACTGTACTTTTCAGCTT+TGG - chr1.3:62942879-62942898 MS.gene21571:intron 40.0%
! CACTGACCGTTCCTTTAAAA+AGG - chr1.3:62944182-62944201 MS.gene21571:CDS 40.0%
! CTTACTTTGATGGCTTCTCA+TGG - chr1.3:62942215-62942234 MS.gene21571:CDS 40.0%
! GACCGTTCCTTTAAAAAGGT+AGG - chr1.3:62944186-62944205 MS.gene21571:CDS 40.0%
! GCTTTGTTGTCTGACTTGAT+GGG - chr1.3:62942990-62943009 MS.gene21571:intron 40.0%
! TGTTCTTGATGGCTGATAAG+AGG - chr1.3:62944731-62944750 MS.gene21571:intron 40.0%
!! AGCTTTGTTGTCTGACTTGA+TGG - chr1.3:62942989-62943008 MS.gene21571:intron 40.0%
!! GGATTGGCTTTGACTTTCTT+CGG + chr1.3:62944631-62944650 None:intergenic 40.0%
!! TGATGGGTTTGCAACTATCA+GGG - chr1.3:62943006-62943025 MS.gene21571:intron 40.0%
!! TGGGCTTATTTGGCTTTCTT+GGG - chr1.3:62944939-62944958 MS.gene21571:CDS 40.0%
!! TTGATGGGTTTGCAACTATC+AGG - chr1.3:62943005-62943024 MS.gene21571:intron 40.0%
!! TTGGGCTTATTTGGCTTTCT+TGG - chr1.3:62944938-62944957 MS.gene21571:CDS 40.0%
!!! TCTGGTTTTGGTGCATAACA+AGG + chr1.3:62942375-62942394 None:intergenic 40.0%
AAAAGAAAGTAGCCAGGGAG+AGG - chr1.3:62944665-62944684 MS.gene21571:intron 45.0%
AAAGAAAGTAGCCAGGGAGA+GGG - chr1.3:62944666-62944685 MS.gene21571:intron 45.0%
AAGGTCTTCAACACAGGGTT+GGG - chr1.3:62944913-62944932 MS.gene21571:CDS 45.0%
AGACCTTAGACGCACAAAAG+GGG + chr1.3:62944900-62944919 None:intergenic 45.0%
AGAGTGAATATCCAATGCGG+GGG + chr1.3:62944161-62944180 None:intergenic 45.0%
AGTCACATGCATATGGGATC+AGG + chr1.3:62943792-62943811 None:intergenic 45.0%
CATGTTACTCTTGTCTTGCC+AGG - chr1.3:62943680-62943699 MS.gene21571:intron 45.0%
CTCCTTACACAATTCTCTGC+TGG - chr1.3:62944811-62944830 MS.gene21571:CDS 45.0%
CTTGGGGAGTAAATAAGCTG+AGG - chr1.3:62944956-62944975 MS.gene21571:intron 45.0%
GAAGACCTTAGACGCACAAA+AGG + chr1.3:62944902-62944921 None:intergenic 45.0%
GAGAATTGTGTAAGGAGCTC+GGG + chr1.3:62944808-62944827 None:intergenic 45.0%
GCACGTATGCGTAACTTCAA+AGG + chr1.3:62943996-62944015 None:intergenic 45.0%
GGACTCACTATGCAAGAACA+AGG + chr1.3:62943948-62943967 None:intergenic 45.0%
TAAGGTCTTCAACACAGGGT+TGG - chr1.3:62944912-62944931 MS.gene21571:CDS 45.0%
TCACTATGCAAGAACAAGGC+AGG + chr1.3:62943944-62943963 None:intergenic 45.0%
TCGGAAACTTAGTTCAGGCA+GGG + chr1.3:62943969-62943988 None:intergenic 45.0%
TGAGAGCCTTCTGTTCTTGA+TGG - chr1.3:62944720-62944739 MS.gene21571:intron 45.0%
TGCCAGCAGAGAATTGTGTA+AGG + chr1.3:62944816-62944835 None:intergenic 45.0%
! CGTCTAAGGTCTTCAACACA+GGG - chr1.3:62944908-62944927 MS.gene21571:CDS 45.0%
! GTGATCTGCAAACTAGCTTG+CGG - chr1.3:62944868-62944887 MS.gene21571:CDS 45.0%
! TCAACACAGGGTTGGGTTTT+GGG - chr1.3:62944920-62944939 MS.gene21571:CDS 45.0%
! TTCAACACAGGGTTGGGTTT+TGG - chr1.3:62944919-62944938 MS.gene21571:CDS 45.0%
!! CAGGAGTGCTGTGTTAGTTT+GGG - chr1.3:62943699-62943718 MS.gene21571:intron 45.0%
!! GGGCTTATTTGGCTTTCTTG+GGG - chr1.3:62944940-62944959 MS.gene21571:CDS 45.0%
!!! GGTTGGGTTTTGGGCTTATT+TGG - chr1.3:62944929-62944948 MS.gene21571:CDS 45.0%
ACTGCTGAAGCAGGTGTAGA+TGG - chr1.3:62942957-62942976 MS.gene21571:intron 50.0%
CAATTCTCTGCTGGCATTGC+TGG - chr1.3:62944820-62944839 MS.gene21571:CDS 50.0%
CAGGAGGAAGCCAATTGTCA+TGG + chr1.3:62944225-62944244 None:intergenic 50.0%
CCAAACTAACACAGCACTCC+TGG + chr1.3:62943701-62943720 None:intergenic 50.0%
GACCTTAGACGCACAAAAGG+GGG + chr1.3:62944899-62944918 None:intergenic 50.0%
GTCGGAAACTTAGTTCAGGC+AGG + chr1.3:62943970-62943989 None:intergenic 50.0%
TCACAGATAGCACGACAGCA+AGG + chr1.3:62944852-62944871 None:intergenic 50.0%
TGCTAGTAGTGGCAGTGCTA+AGG - chr1.3:62945091-62945110 MS.gene21571:CDS 50.0%
! ACATCTGAGACTGCTGAAGC+AGG - chr1.3:62942948-62942967 MS.gene21571:intron 50.0%
! CTGCAAACTAGCTTGCGGAA+GGG - chr1.3:62944873-62944892 MS.gene21571:CDS 50.0%
! GCGTCTAAGGTCTTCAACAC+AGG - chr1.3:62944907-62944926 MS.gene21571:CDS 50.0%
! TCTGCAAACTAGCTTGCGGA+AGG - chr1.3:62944872-62944891 MS.gene21571:CDS 50.0%
!! ATGGTGCCGGTGATATGTAG+AGG - chr1.3:62942735-62942754 MS.gene21571:intron 50.0%
!! CCAGGAGTGCTGTGTTAGTT+TGG - chr1.3:62943698-62943717 MS.gene21571:intron 50.0%
!! TGGCTGATAAGAGGCATCGT+CGG - chr1.3:62944740-62944759 MS.gene21571:intron 50.0%
AGCTGCAGCGTTGCTAGTAG+TGG - chr1.3:62945080-62945099 MS.gene21571:CDS 55.0%
CAATGCGGGGGAAATGCTTC+TGG + chr1.3:62944149-62944168 None:intergenic 55.0%
CTTGAACAGATCCCTCTCCC+TGG + chr1.3:62944680-62944699 None:intergenic 55.0%
TCTGCTGGCATTGCTGGTAC+TGG - chr1.3:62944826-62944845 MS.gene21571:CDS 55.0%
!! CAGAAGCATTTCCCCCGCAT+TGG - chr1.3:62944147-62944166 MS.gene21571:CDS 55.0%
!! GGCTGATAAGAGGCATCGTC+GGG - chr1.3:62944741-62944760 MS.gene21571:intron 55.0%
AGCGCGCGAACAGTGAGCAA+CGG - chr1.3:62943600-62943619 MS.gene21571:intron 60.0%
GCTCACTGTTCGCGCGCTTA+TGG + chr1.3:62943598-62943617 None:intergenic 60.0%
GTAAGGAGCTCGGGAAGCTC+CGG + chr1.3:62944799-62944818 None:intergenic 60.0%
! GGCCCCCTTTTGTGCGTCTA+AGG - chr1.3:62944894-62944913 MS.gene21571:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 62942200 62945122 62942200 ID=MS.gene21571
chr1.3 mRNA 62942200 62945122 62942200 ID=MS.gene21571.t1;Parent=MS.gene21571
chr1.3 exon 62945057 62945122 62945057 ID=MS.gene21571.t1.exon1;Parent=MS.gene21571.t1
chr1.3 CDS 62945057 62945122 62945057 ID=cds.MS.gene21571.t1;Parent=MS.gene21571.t1
chr1.3 exon 62944788 62944968 62944788 ID=MS.gene21571.t1.exon2;Parent=MS.gene21571.t1
chr1.3 CDS 62944788 62944968 62944788 ID=cds.MS.gene21571.t1;Parent=MS.gene21571.t1
chr1.3 exon 62944040 62944454 62944040 ID=MS.gene21571.t1.exon3;Parent=MS.gene21571.t1
chr1.3 CDS 62944040 62944454 62944040 ID=cds.MS.gene21571.t1;Parent=MS.gene21571.t1
chr1.3 exon 62943119 62943199 62943119 ID=MS.gene21571.t1.exon4;Parent=MS.gene21571.t1
chr1.3 CDS 62943119 62943199 62943119 ID=cds.MS.gene21571.t1;Parent=MS.gene21571.t1
chr1.3 exon 62942200 62942695 62942200 ID=MS.gene21571.t1.exon5;Parent=MS.gene21571.t1
chr1.3 CDS 62942200 62942695 62942200 ID=cds.MS.gene21571.t1;Parent=MS.gene21571.t1
Gene Sequence

>MS.gene21571

ATGATGATTCAGAAACTTACTTTGATGGCTTCTCATGGATTTCCATCTCAAGAATATGCCATGAAGGTAAAATTATTAGTATTGTTTATGATTTTATTTTTGTCACTGAAGTATTTTTTGTTTTAATTTTGATTGAATTTTTTTTTTATGATAGGGTTGTCAACAATTGGTGCCTTGTTATGCACCAAAACCAGATATTATTAGATATCAGAGTCCAAATCTTAGGTTAAATTCATCTGAAGAATCAAGAATGCCATCAAAAGAGTGGTTCAATTCAAATCAGTTTGTTGATTTTGATATTTCAGCTCTAAAGCCAACGGTTATTGATGTACAAGGTGTGTAGCCAATTTATTGAATTTGTGTATATGATGCAATATTTTGATTATACAATGTTGGTATTTTTAGTTTATTTGTTTTCTTTCCATGTATTAGTAGAATGCTTGAATTGAAAGGTACTTTTTTTCCATGTTGTATATTTTTTATGAGCAATGTGATAGTAACTGAAATTATTCTTAAGAATATTACTATATCAGTCATGGTGCCGGTGATATGTAGAGGATTGTCTAAGATGATGACTTATGTTGCTAAATCTTTTGGTTCAATATTAAGTATTGTAACTTATCTTATGTGTCTTACTCTAAGTAATGTAACTTATCTTTTGGTTGCAGCTACTTGTCCAAGCACTGTACTTTTCAGCTTTGGCGTCATTGATCAATGCACCGAGCATGATAAAACTTTGCAGTGTATCACATCTGAGACTGCTGAAGCAGGTGTAGATGGTGTTCGTAAAGCTTTGTTGTCTGACTTGATGGGTTTGCAACTATCAGGGATTAATATGCCTCAAATATCATTGCATTCTCTCATCTACCCAAATAGGAATTTCTACATCTCGAAGCCTTTGCTTGATTTTTTTCAAGATTCAGCCCTTAGTTCAAAAATTACTGTTCATCTAAATGGTCAAGTCACGTTTATGGGTACTGAAATTGAGATGAAAGATTTTCTTGCTATTGTTGCTGAGTCATACGTATCAAAACGCACACATACAGGCGAAAAACAGTCTATGCTTGTTCCATACTTCACTAGGTATGTACATATGTGGAACCGTTTAAATTCAATTGATCACATGAAATCCTTCTGTTTGGGTTACTTTGTCATAATAGAAAACAATATTCAGGGACTTCTTGGTTAAGTTATGACTGTCAATCTATTGATCAACACCGGATTTAATTATAAATATAACATCAAATTTAAAAACTTGGCCAAAAATGCATTTTTAAATGTGTTTGTTTTCGAGTGTATTGTCTGATACTGGAGGCTTTACAACCTGCATGATAAAGCTTTAACATTGTTGACTCTACTGTATTGCATTCATGACAAGTAGTTGAAGAATTGTATCCATAAGCGCGCGAACAGTGAGCAACGGTTCTTGTTCTAATAAATTTGTCGTACATATTTTGGTCACTTTGAAAAATTACTAGCTCATGTTACTCTTGTCTTGCCAGGAGTGCTGTGTTAGTTTGGGTCATTGTGATACTGTCATTTAAGATAGCTGTAAATTTGATCATTGGGACAACAGACTTCTTTTTTCTCCTGATCCCATATGCATGTGACTCTGTTTTTTCTTATTTGAATTTTTATATTAATTTATCGAATTTATCTAACTAGGCAACAAATACAAAAATCAGGATGCATCTATGATAAGTTAAATACTACTATAAGTTAAAGTAGTAAAAATCAATGGCCTGCCTTGTTCTTGCATAGTGAGTCCCTGCCTGAACTAAGTTTCCGACAAACCTTTGAAGTTACGCATACGTGCTTCAGTTATAGATAATACACATACTATCTGATTCTCCATATTCAATATTCTATTCTTGTTAGTTATGTATCAATCAACTGACTTTTGCTGAAAATCTACATGGACAGGCTGAATATAAATGAAGTAGAGGCCAGAAGCATTTCCCCCGCATTGGATATTCACTCTACACTGACCGTTCCTTTAAAAAGGTAGGTAGAATATGTTTTCCATGACAATTGGCTTCCTCCTGAATTTGACATACGCAAAATATGCTGTTATAGGAGTCATTTTTATTCAAAAAACTGTTCATAATCATTCTATCCTCTGTAAAACAAATGGATCATTGGTCTGAGAGCTTTTACTCTAAAAATGGTTTAATTTTATGCCCGACTTTAATTTTATGCATTTTGTTTCCTTCATATGATGTGGATTGAGTTAGGCCTAGCTCAAATTTTAAGAGAAATAATCATCAGATGAGGGAATCAAGTTTTATTTTTGGGCTGTATTATTGATTTCATTTATGTTAACTGTTTCTGTTGCCATTGTTGATAGTCTCATGTGCTGCCATACAGTGATCACAGTATTTGCTCAAGAAATATATTAATATTTAATGTATTTCTCTTGCTTGACAGTCCGAAGAAAGTCAAAGCCAATCCATCACGAAAAAAGAAAAAGAAAGTAGCCAGGGAGAGGGATCTGTTCAAGAAGAACTACATTCATGCATGTGAGAGCCTTCTGTTCTTGATGGCTGATAAGAGGCATCGTCGGGAAACAGCAGTTCTTTCACTGAAGAAATCAGGTCCGGAGCTTCCCGAGCTCCTTACACAATTCTCTGCTGGCATTGCTGGTACTGGCCTTGCTGTCGTGCTATCTGTGATCTGCAAACTAGCTTGCGGAAGGGCCCCCTTTTGTGCGTCTAAGGTCTTCAACACAGGGTTGGGTTTTGGGCTTATTTGGCTTTCTTGGGGAGTAAATAAGCTGAGGGATACAATTGTTAACATAAGCAAGAATGCTGGAAAGATGGGATTGAAAGATGAGGAAATGATTCAAAAAGTGGATAAGAGTCTAAAAGAAGTTTACTTTAGAGCTGCAGCGTTGCTAGTAGTGGCAGTGCTAAGGCTTGCTTGA

Protein sequence

>MS.gene21571.t1

MMIQKLTLMASHGFPSQEYAMKGCQQLVPCYAPKPDIIRYQSPNLRLNSSEESRMPSKEWFNSNQFVDFDISALKPTVIDVQATCPSTVLFSFGVIDQCTEHDKTLQCITSETAEAGVDGVRKALLSDLMGLQLSGINMPQISLHSLIYPNRNFYISKPLLDFFQDSALSSKITVHLNGQVTFMGTEIEMKDFLAIVAESYVSKRTHTGEKQSMLVPYFTRLNINEVEARSISPALDIHSTLTVPLKSPKKVKANPSRKKKKKVARERDLFKKNYIHACESLLFLMADKRHRRETAVLSLKKSGPELPELLTQFSAGIAGTGLAVVLSVICKLACGRAPFCASKVFNTGLGFGLIWLSWGVNKLRDTIVNISKNAGKMGLKDEEMIQKVDKSLKEVYFRAAALLVVAVLRLA