Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21571.t1 | XP_003591628.1 | 92.5 | 413 | 30 | 1 | 1 | 412 | 1 | 413 | 3.30E-211 | 744.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21571.t1 | G7I2X4 | 92.5 | 413 | 30 | 1 | 1 | 412 | 1 | 413 | 2.4e-211 | 744.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049232 | MS.gene21571 | 0.808322 | 3.28E-50 | -1.69E-46 |
MS.gene049356 | MS.gene21571 | 0.853737 | 1.96E-61 | -1.69E-46 |
MS.gene049369 | MS.gene21571 | 0.853553 | 2.21E-61 | -1.69E-46 |
MS.gene049396 | MS.gene21571 | 0.918014 | 2.63E-86 | -1.69E-46 |
MS.gene049609 | MS.gene21571 | 0.813432 | 2.57E-51 | -1.69E-46 |
MS.gene049805 | MS.gene21571 | 0.831995 | 1.22E-55 | -1.69E-46 |
MS.gene050323 | MS.gene21571 | 0.815375 | 9.55E-52 | -1.69E-46 |
MS.gene050499 | MS.gene21571 | 0.823317 | 1.48E-53 | -1.69E-46 |
MS.gene050502 | MS.gene21571 | 0.81677 | 4.66E-52 | -1.69E-46 |
MS.gene050593 | MS.gene21571 | 0.82092 | 5.32E-53 | -1.69E-46 |
MS.gene050670 | MS.gene21571 | 0.81248 | 4.15E-51 | -1.69E-46 |
MS.gene050686 | MS.gene21571 | 0.805966 | 1.03E-49 | -1.69E-46 |
MS.gene050747 | MS.gene21571 | 0.830371 | 3.05E-55 | -1.69E-46 |
MS.gene050772 | MS.gene21571 | 0.816901 | 4.35E-52 | -1.69E-46 |
MS.gene05080 | MS.gene21571 | 0.819662 | 1.03E-52 | -1.69E-46 |
MS.gene050868 | MS.gene21571 | 0.822294 | 2.56E-53 | -1.69E-46 |
MS.gene050871 | MS.gene21571 | 0.827279 | 1.71E-54 | -1.69E-46 |
MS.gene050950 | MS.gene21571 | 0.824165 | 9.36E-54 | -1.69E-46 |
MS.gene051387 | MS.gene21571 | 0.814538 | 1.46E-51 | -1.69E-46 |
MS.gene051509 | MS.gene21571 | 0.800396 | 1.47E-48 | -1.69E-46 |
MS.gene051838 | MS.gene21571 | 0.824347 | 8.48E-54 | -1.69E-46 |
MS.gene051874 | MS.gene21571 | 0.83176 | 1.39E-55 | -1.69E-46 |
MS.gene052164 | MS.gene21571 | 0.810006 | 1.43E-50 | -1.69E-46 |
MS.gene052346 | MS.gene21571 | 0.814618 | 1.41E-51 | -1.69E-46 |
MS.gene052414 | MS.gene21571 | 0.842361 | 2.71E-58 | -1.69E-46 |
MS.gene052421 | MS.gene21571 | 0.824938 | 6.15E-54 | -1.69E-46 |
MS.gene052503 | MS.gene21571 | 0.804157 | 2.47E-49 | -1.69E-46 |
MS.gene052506 | MS.gene21571 | 0.803094 | 4.11E-49 | -1.69E-46 |
MS.gene052822 | MS.gene21571 | 0.802512 | 5.42E-49 | -1.69E-46 |
MS.gene052823 | MS.gene21571 | 0.803889 | 2.81E-49 | -1.69E-46 |
MS.gene053104 | MS.gene21571 | 0.808164 | 3.54E-50 | -1.69E-46 |
MS.gene053449 | MS.gene21571 | 0.862936 | 3.56E-64 | -1.69E-46 |
MS.gene053505 | MS.gene21571 | 0.827614 | 1.42E-54 | -1.69E-46 |
MS.gene053574 | MS.gene21571 | 0.856077 | 4.10E-62 | -1.69E-46 |
MS.gene053626 | MS.gene21571 | 0.863155 | 3.05E-64 | -1.69E-46 |
MS.gene053824 | MS.gene21571 | 0.804012 | 2.65E-49 | -1.69E-46 |
MS.gene053912 | MS.gene21571 | 0.867073 | 1.79E-65 | -1.69E-46 |
MS.gene053916 | MS.gene21571 | 0.830595 | 2.69E-55 | -1.69E-46 |
MS.gene054003 | MS.gene21571 | 0.862301 | 5.58E-64 | -1.69E-46 |
MS.gene054486 | MS.gene21571 | 0.835996 | 1.21E-56 | -1.69E-46 |
MS.gene054595 | MS.gene21571 | 0.816031 | 6.82E-52 | -1.69E-46 |
MS.gene054742 | MS.gene21571 | -0.803454 | 3.46E-49 | -1.69E-46 |
MS.gene05494 | MS.gene21571 | 0.828477 | 8.80E-55 | -1.69E-46 |
MS.gene05505 | MS.gene21571 | 0.854205 | 1.44E-61 | -1.69E-46 |
MS.gene055224 | MS.gene21571 | 0.819827 | 9.47E-53 | -1.69E-46 |
MS.gene055486 | MS.gene21571 | 0.833726 | 4.52E-56 | -1.69E-46 |
MS.gene055722 | MS.gene21571 | 0.810658 | 1.03E-50 | -1.69E-46 |
MS.gene055741 | MS.gene21571 | 0.807143 | 5.84E-50 | -1.69E-46 |
MS.gene055744 | MS.gene21571 | 0.809141 | 2.19E-50 | -1.69E-46 |
MS.gene055909 | MS.gene21571 | 0.868479 | 6.33E-66 | -1.69E-46 |
MS.gene055911 | MS.gene21571 | 0.860935 | 1.46E-63 | -1.69E-46 |
MS.gene055941 | MS.gene21571 | 0.805371 | 1.38E-49 | -1.69E-46 |
MS.gene056166 | MS.gene21571 | 0.869495 | 2.97E-66 | -1.69E-46 |
MS.gene056387 | MS.gene21571 | 0.816743 | 4.73E-52 | -1.69E-46 |
MS.gene056422 | MS.gene21571 | 0.884626 | 1.63E-71 | -1.69E-46 |
MS.gene056448 | MS.gene21571 | 0.857298 | 1.80E-62 | -1.69E-46 |
MS.gene056487 | MS.gene21571 | 0.810581 | 1.07E-50 | -1.69E-46 |
MS.gene056511 | MS.gene21571 | 0.891853 | 2.72E-74 | -1.69E-46 |
MS.gene05664 | MS.gene21571 | 0.827857 | 1.24E-54 | -1.69E-46 |
MS.gene05666 | MS.gene21571 | 0.832278 | 1.04E-55 | -1.69E-46 |
MS.gene057076 | MS.gene21571 | 0.838391 | 2.96E-57 | -1.69E-46 |
MS.gene057086 | MS.gene21571 | 0.873447 | 1.46E-67 | -1.69E-46 |
MS.gene057537 | MS.gene21571 | 0.807617 | 4.63E-50 | -1.69E-46 |
MS.gene057610 | MS.gene21571 | 0.810275 | 1.25E-50 | -1.69E-46 |
MS.gene057734 | MS.gene21571 | 0.878813 | 2.07E-69 | -1.69E-46 |
MS.gene057856 | MS.gene21571 | 0.837451 | 5.16E-57 | -1.69E-46 |
MS.gene05787 | MS.gene21571 | 0.823107 | 1.65E-53 | -1.69E-46 |
MS.gene057926 | MS.gene21571 | 0.812268 | 4.62E-51 | -1.69E-46 |
MS.gene058007 | MS.gene21571 | 0.803938 | 2.74E-49 | -1.69E-46 |
MS.gene058075 | MS.gene21571 | 0.86477 | 9.57E-65 | -1.69E-46 |
MS.gene058120 | MS.gene21571 | 0.822262 | 2.60E-53 | -1.69E-46 |
MS.gene058130 | MS.gene21571 | 0.804941 | 1.70E-49 | -1.69E-46 |
MS.gene058157 | MS.gene21571 | 0.808502 | 3.00E-50 | -1.69E-46 |
MS.gene058376 | MS.gene21571 | 0.811137 | 8.14E-51 | -1.69E-46 |
MS.gene058459 | MS.gene21571 | 0.817384 | 3.39E-52 | -1.69E-46 |
MS.gene058928 | MS.gene21571 | 0.803492 | 3.40E-49 | -1.69E-46 |
MS.gene058948 | MS.gene21571 | 0.801328 | 9.48E-49 | -1.69E-46 |
MS.gene05913 | MS.gene21571 | 0.807036 | 6.15E-50 | -1.69E-46 |
MS.gene059305 | MS.gene21571 | 0.855514 | 5.99E-62 | -1.69E-46 |
MS.gene059366 | MS.gene21571 | 0.817324 | 3.50E-52 | -1.69E-46 |
MS.gene059367 | MS.gene21571 | 0.859922 | 2.96E-63 | -1.69E-46 |
MS.gene059368 | MS.gene21571 | 0.869975 | 2.07E-66 | -1.69E-46 |
MS.gene059455 | MS.gene21571 | 0.815838 | 7.53E-52 | -1.69E-46 |
MS.gene059667 | MS.gene21571 | 0.827938 | 1.19E-54 | -1.69E-46 |
MS.gene059674 | MS.gene21571 | 0.846052 | 2.77E-59 | -1.69E-46 |
MS.gene059711 | MS.gene21571 | 0.859139 | 5.09E-63 | -1.69E-46 |
MS.gene059807 | MS.gene21571 | 0.867241 | 1.58E-65 | -1.69E-46 |
MS.gene059870 | MS.gene21571 | 0.808488 | 3.02E-50 | -1.69E-46 |
MS.gene060372 | MS.gene21571 | 0.822309 | 2.54E-53 | -1.69E-46 |
MS.gene060482 | MS.gene21571 | 0.844838 | 5.90E-59 | -1.69E-46 |
MS.gene060778 | MS.gene21571 | 0.802934 | 4.43E-49 | -1.69E-46 |
MS.gene060804 | MS.gene21571 | 0.83108 | 2.04E-55 | -1.69E-46 |
MS.gene060818 | MS.gene21571 | 0.816202 | 6.24E-52 | -1.69E-46 |
MS.gene060835 | MS.gene21571 | 0.836568 | 8.67E-57 | -1.69E-46 |
MS.gene060837 | MS.gene21571 | 0.883143 | 5.76E-71 | -1.69E-46 |
MS.gene06097 | MS.gene21571 | 0.86897 | 4.40E-66 | -1.69E-46 |
MS.gene061041 | MS.gene21571 | 0.825171 | 5.42E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene21571 | MS.gene72916 | PPI |
MS.gene21571 | MS.gene018063 | PPI |
MS.gene02970 | MS.gene21571 | PPI |
MS.gene21571 | MS.gene21345 | PPI |
MS.gene21571 | MS.gene04697 | PPI |
MS.gene52739 | MS.gene21571 | PPI |
MS.gene005686 | MS.gene21571 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21571.t1 | MTR_1g089980 | 92.231 | 399 | 30 | 1 | 1 | 398 | 1 | 399 | 0.0 | 743 |
MS.gene21571.t1 | MTR_7g094470 | 57.656 | 418 | 169 | 3 | 2 | 412 | 1 | 417 | 1.76e-166 | 473 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21571.t1 | AT4G02920 | 37.674 | 430 | 232 | 11 | 5 | 412 | 3 | 418 | 8.40e-83 | 260 |
MS.gene21571.t1 | AT4G02920 | 37.915 | 422 | 241 | 10 | 5 | 412 | 3 | 417 | 1.81e-82 | 259 |
MS.gene21571.t1 | AT1G03340 | 34.722 | 360 | 200 | 8 | 56 | 412 | 58 | 385 | 1.54e-53 | 183 |
Find 78 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCAACACAGGGTTGGGTTT+TGG | 0.134883 | 1.3:-62942381 | MS.gene21571:CDS |
TTGGGCTTATTTGGCTTTCT+TGG | 0.139996 | 1.3:-62942362 | MS.gene21571:CDS |
GAGATGTAGAAATTCCTATT+TGG | 0.209369 | 1.3:+62944232 | None:intergenic |
AAATGGTCAAGTCACGTTTA+TGG | 0.221667 | 1.3:-62944149 | MS.gene21571:CDS |
CACTGACCGTTCCTTTAAAA+AGG | 0.233508 | 1.3:-62943118 | MS.gene21571:intron |
AAAATTACTGTTCATCTAAA+TGG | 0.237725 | 1.3:-62944166 | MS.gene21571:CDS |
TTGATGGGTTTGCAACTATC+AGG | 0.248405 | 1.3:-62944295 | MS.gene21571:CDS |
TGGGCTTATTTGGCTTTCTT+GGG | 0.252384 | 1.3:-62942361 | MS.gene21571:CDS |
GATATCAGAGTCCAAATCTT+AGG | 0.281870 | 1.3:-62944897 | MS.gene21571:CDS |
GATGAATTTAACCTAAGATT+TGG | 0.287708 | 1.3:+62944886 | None:intergenic |
TGAGAGCCTTCTGTTCTTGA+TGG | 0.290630 | 1.3:-62942580 | MS.gene21571:CDS |
GATTCAGAAACTTACTTTGA+TGG | 0.292699 | 1.3:-62945095 | MS.gene21571:CDS |
CAATTCTCTGCTGGCATTGC+TGG | 0.299676 | 1.3:-62942480 | MS.gene21571:CDS |
ATTCTCTCATCTACCCAAAT+AGG | 0.325349 | 1.3:-62944246 | MS.gene21571:CDS |
CTCTGATATCTAATAATATC+TGG | 0.353756 | 1.3:+62944910 | None:intergenic |
GGATTGGCTTTGACTTTCTT+CGG | 0.356219 | 1.3:+62942672 | None:intergenic |
TATCTAATAATATCTGGTTT+TGG | 0.360696 | 1.3:+62944916 | None:intergenic |
AGCTTTGTTGTCTGACTTGA+TGG | 0.364159 | 1.3:-62944311 | MS.gene21571:CDS |
AATGGTCAAGTCACGTTTAT+GGG | 0.369340 | 1.3:-62944148 | MS.gene21571:CDS |
GTTCTTTCACTGAAGAAATC+AGG | 0.382585 | 1.3:-62942528 | MS.gene21571:CDS |
AGATGTAGAAATTCCTATTT+GGG | 0.383642 | 1.3:+62944233 | None:intergenic |
TCTGCTGGCATTGCTGGTAC+TGG | 0.385638 | 1.3:-62942474 | MS.gene21571:CDS |
AAGGTCTTCAACACAGGGTT+GGG | 0.391495 | 1.3:-62942387 | MS.gene21571:CDS |
ATGATAGGGTTGTCAACAAT+TGG | 0.402315 | 1.3:-62944953 | MS.gene21571:intron |
TGTACATACCTAGTGAAGTA+TGG | 0.405041 | 1.3:+62944031 | None:intergenic |
AAGCAAGAATGCTGGAAAGA+TGG | 0.436409 | 1.3:-62942304 | MS.gene21571:CDS |
AGAGAATGCAATGATATTTG+AGG | 0.446652 | 1.3:+62944262 | None:intergenic |
AGCAAGAATGCTGGAAAGAT+GGG | 0.449740 | 1.3:-62942303 | MS.gene21571:CDS |
TGTTCTTGATGGCTGATAAG+AGG | 0.453397 | 1.3:-62942569 | MS.gene21571:CDS |
GAGAATTGTGTAAGGAGCTC+GGG | 0.454630 | 1.3:+62942495 | None:intergenic |
GAAGACCTTAGACGCACAAA+AGG | 0.465886 | 1.3:+62942401 | None:intergenic |
ACTGCTGAAGCAGGTGTAGA+TGG | 0.468818 | 1.3:-62944343 | MS.gene21571:CDS |
GCGTCTAAGGTCTTCAACAC+AGG | 0.476430 | 1.3:-62942393 | MS.gene21571:CDS |
CTTACTTTGATGGCTTCTCA+TGG | 0.481501 | 1.3:-62945085 | MS.gene21571:CDS |
GGCTGATAAGAGGCATCGTC+GGG | 0.482476 | 1.3:-62942559 | MS.gene21571:CDS |
TTCACTGAAGAAATCAGGTC+CGG | 0.487415 | 1.3:-62942523 | MS.gene21571:CDS |
TGCTAGTAGTGGCAGTGCTA+AGG | 0.499557 | 1.3:-62942209 | MS.gene21571:CDS |
CTCCTTACACAATTCTCTGC+TGG | 0.505017 | 1.3:-62942489 | MS.gene21571:CDS |
GGGCTTATTTGGCTTTCTTG+GGG | 0.508276 | 1.3:-62942360 | MS.gene21571:CDS |
GTAAGGAGCTCGGGAAGCTC+CGG | 0.511742 | 1.3:+62942504 | None:intergenic |
GTATCAAAACGCACACATAC+AGG | 0.515015 | 1.3:-62944076 | MS.gene21571:CDS |
AAGACCTTAGACGCACAAAA+GGG | 0.516732 | 1.3:+62942402 | None:intergenic |
TTCATGGCATATTCTTGAGA+TGG | 0.519316 | 1.3:+62945058 | None:intergenic |
AAGCTGAAAAGTACAGTGCT+TGG | 0.520108 | 1.3:+62944424 | None:intergenic |
TAAGGTCTTCAACACAGGGT+TGG | 0.534621 | 1.3:-62942388 | MS.gene21571:CDS |
AGAGAATTGTGTAAGGAGCT+CGG | 0.542826 | 1.3:+62942494 | None:intergenic |
GTAGAGTGAATATCCAATGC+GGG | 0.543199 | 1.3:+62943140 | None:intergenic |
AAAAGAAAGTAGCCAGGGAG+AGG | 0.544026 | 1.3:-62942635 | MS.gene21571:CDS |
ATCTCAAGAATATGCCATGA+AGG | 0.545054 | 1.3:-62945056 | MS.gene21571:intron |
CTTGAACAGATCCCTCTCCC+TGG | 0.545602 | 1.3:+62942623 | None:intergenic |
ACATCTGAGACTGCTGAAGC+AGG | 0.548211 | 1.3:-62944352 | MS.gene21571:CDS |
AGCTGCAGCGTTGCTAGTAG+TGG | 0.549465 | 1.3:-62942220 | MS.gene21571:CDS |
GTTAACATAAGCAAGAATGC+TGG | 0.550226 | 1.3:-62942312 | MS.gene21571:CDS |
TGATGGGTTTGCAACTATCA+GGG | 0.550930 | 1.3:-62944294 | MS.gene21571:CDS |
CCAACGGTTATTGATGTACA+AGG | 0.561376 | 1.3:-62944787 | MS.gene21571:intron |
GCTTTGTTGTCTGACTTGAT+GGG | 0.563096 | 1.3:-62944310 | MS.gene21571:CDS |
CCTTGTACATCAATAACCGT+TGG | 0.573161 | 1.3:+62944787 | None:intergenic |
TGCCAGCAGAGAATTGTGTA+AGG | 0.578242 | 1.3:+62942487 | None:intergenic |
GCTGAATATAAATGAAGTAG+AGG | 0.580301 | 1.3:-62943177 | MS.gene21571:CDS |
TGGCTGATAAGAGGCATCGT+CGG | 0.580551 | 1.3:-62942560 | MS.gene21571:CDS |
CTTGGGGAGTAAATAAGCTG+AGG | 0.580784 | 1.3:-62942344 | MS.gene21571:CDS |
TATCAGCCATCAAGAACAGA+AGG | 0.589403 | 1.3:+62942574 | None:intergenic |
TATTTCAGCTCTAAAGCCAA+CGG | 0.594762 | 1.3:-62944803 | MS.gene21571:CDS |
TGCTTGTTCCATACTTCACT+AGG | 0.596244 | 1.3:-62944039 | MS.gene21571:intron |
AAAGAAAGTAGCCAGGGAGA+GGG | 0.598067 | 1.3:-62942634 | MS.gene21571:CDS |
GACCTTAGACGCACAAAAGG+GGG | 0.599512 | 1.3:+62942404 | None:intergenic |
CAAGAATGCCATCAAAAGAG+TGG | 0.606435 | 1.3:-62944855 | MS.gene21571:CDS |
CGTCTAAGGTCTTCAACACA+GGG | 0.609157 | 1.3:-62942392 | MS.gene21571:CDS |
TCTGCAAACTAGCTTGCGGA+AGG | 0.611580 | 1.3:-62942428 | MS.gene21571:CDS |
TTGGGGAGTAAATAAGCTGA+GGG | 0.614442 | 1.3:-62942343 | MS.gene21571:CDS |
AAAGATGGGATTGAAAGATG+AGG | 0.631344 | 1.3:-62942289 | MS.gene21571:CDS |
GTGATCTGCAAACTAGCTTG+CGG | 0.634286 | 1.3:-62942432 | MS.gene21571:CDS |
AGACCTTAGACGCACAAAAG+GGG | 0.635020 | 1.3:+62942403 | None:intergenic |
TAGAGTGAATATCCAATGCG+GGG | 0.642303 | 1.3:+62943141 | None:intergenic |
CTGCAAACTAGCTTGCGGAA+GGG | 0.661355 | 1.3:-62942427 | MS.gene21571:CDS |
TCACAGATAGCACGACAGCA+AGG | 0.673650 | 1.3:+62942451 | None:intergenic |
TGTAGAGTGAATATCCAATG+CGG | 0.714818 | 1.3:+62943139 | None:intergenic |
AGAGTGAATATCCAATGCGG+GGG | 0.722783 | 1.3:+62943142 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTTATATTTATAATTAAATC+CGG | + | chr1.3:62943420-62943439 | None:intergenic | 10.0% |
!!! | TGAATTTTTTTTTTATGATA+GGG | - | chr1.3:62942333-62942352 | MS.gene21571:CDS | 10.0% |
!!! | TTGAATTTTTTTTTTATGAT+AGG | - | chr1.3:62942332-62942351 | MS.gene21571:CDS | 10.0% |
!! | AAAATGCATAAAATTAAAGT+CGG | + | chr1.3:62944384-62944403 | None:intergenic | 15.0% |
!! | ATAATAGAAAACAATATTCA+GGG | - | chr1.3:62943353-62943372 | MS.gene21571:intron | 15.0% |
!! | TAACATCAAATTTAAAAACT+TGG | - | chr1.3:62943436-62943455 | MS.gene21571:intron | 15.0% |
!! | TATACACAAATTCAATAAAT+TGG | + | chr1.3:62942546-62942565 | None:intergenic | 15.0% |
!!! | ATATTTTGATTATACAATGT+TGG | - | chr1.3:62942573-62942592 | MS.gene21571:CDS | 15.0% |
!! | AAAATTACTGTTCATCTAAA+TGG | - | chr1.3:62943134-62943153 | MS.gene21571:CDS | 20.0% |
!! | AAATGCATAAAATTAAAGTC+GGG | + | chr1.3:62944383-62944402 | None:intergenic | 20.0% |
!! | CAAGAATAGAATATTGAATA+TGG | + | chr1.3:62944054-62944073 | None:intergenic | 20.0% |
!! | CATAATAGAAAACAATATTC+AGG | - | chr1.3:62943352-62943371 | MS.gene21571:intron | 20.0% |
!! | CTCATAAAAAATATACAACA+TGG | + | chr1.3:62942666-62942685 | None:intergenic | 20.0% |
!! | GTTAAAGTAGTAAAAATCAA+TGG | - | chr1.3:62943918-62943937 | MS.gene21571:intron | 20.0% |
!! | TGTGATCAATTGAATTTAAA+CGG | + | chr1.3:62943304-62943323 | None:intergenic | 20.0% |
!! | TTTATCGAATTTATCTAACT+AGG | - | chr1.3:62943843-62943862 | MS.gene21571:intron | 20.0% |
!!! | AACAGTAATTTTTGAACTAA+GGG | + | chr1.3:62943126-62943145 | None:intergenic | 20.0% |
!!! | AAGTAATGTAACTTATCTTT+TGG | - | chr1.3:62942839-62942858 | MS.gene21571:intron | 20.0% |
!!! | CACATTTAAAAATGCATTTT+TGG | + | chr1.3:62943462-62943481 | None:intergenic | 20.0% |
!!! | TAAATTTGTCGTACATATTT+TGG | - | chr1.3:62943635-62943654 | MS.gene21571:intron | 20.0% |
!!! | TACTAATAATTTTACCTTCA+TGG | + | chr1.3:62942261-62942280 | None:intergenic | 20.0% |
!!! | TATCTAATAATATCTGGTTT+TGG | + | chr1.3:62942387-62942406 | None:intergenic | 20.0% |
! | AGATGTAGAAATTCCTATTT+GGG | + | chr1.3:62943070-62943089 | None:intergenic | 25.0% |
! | ATAGCTGTAAATTTGATCAT+TGG | - | chr1.3:62943745-62943764 | MS.gene21571:intron | 25.0% |
! | CTCTGATATCTAATAATATC+TGG | + | chr1.3:62942393-62942412 | None:intergenic | 25.0% |
! | GAATATTACTATATCAGTCA+TGG | - | chr1.3:62942716-62942735 | MS.gene21571:intron | 25.0% |
! | GATGAATTTAACCTAAGATT+TGG | + | chr1.3:62942417-62942436 | None:intergenic | 25.0% |
! | TAGCTGTAAATTTGATCATT+GGG | - | chr1.3:62943746-62943765 | MS.gene21571:intron | 25.0% |
! | TCTTGAAAAAAATCAAGCAA+AGG | + | chr1.3:62943098-62943117 | None:intergenic | 25.0% |
! | TTTCTCTTAAAATTTGAGCT+AGG | + | chr1.3:62944438-62944457 | None:intergenic | 25.0% |
!! | AATATGTTTTCCATGACAAT+TGG | - | chr1.3:62944212-62944231 | MS.gene21571:CDS | 25.0% |
!! | ACTTATGTTGCTAAATCTTT+TGG | - | chr1.3:62942774-62942793 | MS.gene21571:intron | 25.0% |
!! | GAACAGTAATTTTTGAACTA+AGG | + | chr1.3:62943127-62943146 | None:intergenic | 25.0% |
!! | TATTCTACCTACCTTTTTAA+AGG | + | chr1.3:62944196-62944215 | None:intergenic | 25.0% |
!!! | AGGGAATCAAGTTTTATTTT+TGG | - | chr1.3:62944471-62944490 | MS.gene21571:intron | 25.0% |
!!! | GGGAATCAAGTTTTATTTTT+GGG | - | chr1.3:62944472-62944491 | MS.gene21571:intron | 25.0% |
!!! | TTCTTTTTCTTTTTTCGTGA+TGG | + | chr1.3:62944652-62944671 | None:intergenic | 25.0% |
AAAAGAAAAAGAAAGTAGCC+AGG | - | chr1.3:62944659-62944678 | MS.gene21571:intron | 30.0% | |
AAAGAAAAAGAAAGTAGCCA+GGG | - | chr1.3:62944660-62944679 | MS.gene21571:intron | 30.0% | |
AGAGAAATAATCATCAGATG+AGG | - | chr1.3:62944451-62944470 | MS.gene21571:intron | 30.0% | |
AGAGAATGCAATGATATTTG+AGG | + | chr1.3:62943041-62943060 | None:intergenic | 30.0% | |
AGGCAACAAATACAAAAATC+AGG | - | chr1.3:62943863-62943882 | MS.gene21571:intron | 30.0% | |
AGTAGAATGCTTGAATTGAA+AGG | - | chr1.3:62942630-62942649 | MS.gene21571:CDS | 30.0% | |
CTGTAAAACAAATGGATCAT+TGG | - | chr1.3:62944319-62944338 | MS.gene21571:CDS | 30.0% | |
GAGAAATAATCATCAGATGA+GGG | - | chr1.3:62944452-62944471 | MS.gene21571:intron | 30.0% | |
GAGATGTAGAAATTCCTATT+TGG | + | chr1.3:62943071-62943090 | None:intergenic | 30.0% | |
GATTCAGAAACTTACTTTGA+TGG | - | chr1.3:62942205-62942224 | MS.gene21571:CDS | 30.0% | |
GCTGAATATAAATGAAGTAG+AGG | - | chr1.3:62944123-62944142 | MS.gene21571:CDS | 30.0% | |
TACGCAAAATATGCTGTTAT+AGG | - | chr1.3:62944254-62944273 | MS.gene21571:CDS | 30.0% | |
TCAAGCATTCTACTAATACA+TGG | + | chr1.3:62942624-62942643 | None:intergenic | 30.0% | |
TCTATCCTCTGTAAAACAAA+TGG | - | chr1.3:62944311-62944330 | MS.gene21571:CDS | 30.0% | |
TGAGGAAATGATTCAAAAAG+TGG | - | chr1.3:62945029-62945048 | MS.gene21571:intron | 30.0% | |
TTTGTTTCCTTCATATGATG+TGG | - | chr1.3:62944401-62944420 | MS.gene21571:CDS | 30.0% | |
! | ACTTTTGCTGAAAATCTACA+TGG | - | chr1.3:62944096-62944115 | MS.gene21571:CDS | 30.0% |
! | ATGTTAAAGCTTTATCATGC+AGG | + | chr1.3:62943526-62943545 | None:intergenic | 30.0% |
! | ATTTTGCGTATGTCAAATTC+AGG | + | chr1.3:62944244-62944263 | None:intergenic | 30.0% |
!! | GAGAGCTTTTACTCTAAAAA+TGG | - | chr1.3:62944345-62944364 | MS.gene21571:CDS | 30.0% |
!! | TACCTACCTTTTTAAAGGAA+CGG | + | chr1.3:62944191-62944210 | None:intergenic | 30.0% |
!!! | ATGATCCATTTGTTTTACAG+AGG | + | chr1.3:62944319-62944338 | None:intergenic | 30.0% |
!!! | TTTCTTTTTTCGTGATGGAT+TGG | + | chr1.3:62944647-62944666 | None:intergenic | 30.0% |
AAAACAGAGTCACATGCATA+TGG | + | chr1.3:62943799-62943818 | None:intergenic | 35.0% | |
AAACAGAGTCACATGCATAT+GGG | + | chr1.3:62943798-62943817 | None:intergenic | 35.0% | |
AAAGATGGGATTGAAAGATG+AGG | - | chr1.3:62945011-62945030 | MS.gene21571:intron | 35.0% | |
AAATGGTCAAGTCACGTTTA+TGG | - | chr1.3:62943151-62943170 | MS.gene21571:CDS | 35.0% | |
AACAATATTCAGGGACTTCT+TGG | - | chr1.3:62943362-62943381 | MS.gene21571:intron | 35.0% | |
AATGGTCAAGTCACGTTTAT+GGG | - | chr1.3:62943152-62943171 | MS.gene21571:CDS | 35.0% | |
ACTCAATCCACATCATATGA+AGG | + | chr1.3:62944411-62944430 | None:intergenic | 35.0% | |
ATCTCAAGAATATGCCATGA+AGG | - | chr1.3:62942244-62942263 | MS.gene21571:CDS | 35.0% | |
ATGATAGGGTTGTCAACAAT+TGG | - | chr1.3:62942347-62942366 | MS.gene21571:CDS | 35.0% | |
ATTCTCTCATCTACCCAAAT+AGG | - | chr1.3:62943054-62943073 | MS.gene21571:intron | 35.0% | |
CAAATACTGTGATCACTGTA+TGG | + | chr1.3:62944562-62944581 | None:intergenic | 35.0% | |
CACATGAAATCCTTCTGTTT+GGG | - | chr1.3:62943320-62943339 | MS.gene21571:intron | 35.0% | |
GATATCAGAGTCCAAATCTT+AGG | - | chr1.3:62942403-62942422 | MS.gene21571:CDS | 35.0% | |
GTCAATCTATTGATCAACAC+CGG | - | chr1.3:62943398-62943417 | MS.gene21571:intron | 35.0% | |
GTTAACATAAGCAAGAATGC+TGG | - | chr1.3:62944988-62945007 | MS.gene21571:intron | 35.0% | |
GTTCTTTCACTGAAGAAATC+AGG | - | chr1.3:62944772-62944791 | MS.gene21571:intron | 35.0% | |
TCACATGAAATCCTTCTGTT+TGG | - | chr1.3:62943319-62943338 | MS.gene21571:intron | 35.0% | |
TCACTAGGTATGTACATATG+TGG | - | chr1.3:62943276-62943295 | MS.gene21571:intron | 35.0% | |
TGTACATACCTAGTGAAGTA+TGG | + | chr1.3:62943272-62943291 | None:intergenic | 35.0% | |
TGTAGAGTGAATATCCAATG+CGG | + | chr1.3:62944164-62944183 | None:intergenic | 35.0% | |
TTCATGGCATATTCTTGAGA+TGG | + | chr1.3:62942245-62942264 | None:intergenic | 35.0% | |
! | CATATGATGTGGATTGAGTT+AGG | - | chr1.3:62944412-62944431 | MS.gene21571:CDS | 35.0% |
! | GAATTGAACCACTCTTTTGA+TGG | + | chr1.3:62942456-62942475 | None:intergenic | 35.0% |
!! | CTGCAAAGTTTTATCATGCT+CGG | + | chr1.3:62942922-62942941 | None:intergenic | 35.0% |
!! | TATTTCAGCTCTAAAGCCAA+CGG | - | chr1.3:62942497-62942516 | MS.gene21571:CDS | 35.0% |
AAGACCTTAGACGCACAAAA+GGG | + | chr1.3:62944901-62944920 | None:intergenic | 40.0% | |
AAGCAAGAATGCTGGAAAGA+TGG | - | chr1.3:62944996-62945015 | MS.gene21571:intron | 40.0% | |
AGAGAATTGTGTAAGGAGCT+CGG | + | chr1.3:62944809-62944828 | None:intergenic | 40.0% | |
AGCAAGAATGCTGGAAAGAT+GGG | - | chr1.3:62944997-62945016 | MS.gene21571:intron | 40.0% | |
AGTGTATTGTCTGATACTGG+AGG | - | chr1.3:62943492-62943511 | MS.gene21571:intron | 40.0% | |
CAAGAATGCCATCAAAAGAG+TGG | - | chr1.3:62942445-62942464 | MS.gene21571:CDS | 40.0% | |
CCAACGGTTATTGATGTACA+AGG | - | chr1.3:62942513-62942532 | MS.gene21571:CDS | 40.0% | |
CCTTGTACATCAATAACCGT+TGG | + | chr1.3:62942516-62942535 | None:intergenic | 40.0% | |
GACAAAGTAACCCAAACAGA+AGG | + | chr1.3:62943333-62943352 | None:intergenic | 40.0% | |
GACAATCCTCTACATATCAC+CGG | + | chr1.3:62942744-62942763 | None:intergenic | 40.0% | |
GCACATGAGACTATCAACAA+TGG | + | chr1.3:62944537-62944556 | None:intergenic | 40.0% | |
GCGTAACTTCAAAGGTTTGT+CGG | + | chr1.3:62943988-62944007 | None:intergenic | 40.0% | |
GTAGAGTGAATATCCAATGC+GGG | + | chr1.3:62944163-62944182 | None:intergenic | 40.0% | |
GTATCAAAACGCACACATAC+AGG | - | chr1.3:62943224-62943243 | MS.gene21571:intron | 40.0% | |
GTTTGTCGGAAACTTAGTTC+AGG | + | chr1.3:62943974-62943993 | None:intergenic | 40.0% | |
TACTATATCAGTCATGGTGC+CGG | - | chr1.3:62942722-62942741 | MS.gene21571:intron | 40.0% | |
TAGAGTGAATATCCAATGCG+GGG | + | chr1.3:62944162-62944181 | None:intergenic | 40.0% | |
TATCAGCCATCAAGAACAGA+AGG | + | chr1.3:62944729-62944748 | None:intergenic | 40.0% | |
TCGAGTGTATTGTCTGATAC+TGG | - | chr1.3:62943489-62943508 | MS.gene21571:intron | 40.0% | |
TGCTGAAAATCTACATGGAC+AGG | - | chr1.3:62944101-62944120 | MS.gene21571:CDS | 40.0% | |
TGCTTGTTCCATACTTCACT+AGG | - | chr1.3:62943261-62943280 | MS.gene21571:intron | 40.0% | |
TTCACTGAAGAAATCAGGTC+CGG | - | chr1.3:62944777-62944796 | MS.gene21571:intron | 40.0% | |
TTGCGTATGTCAAATTCAGG+AGG | + | chr1.3:62944241-62944260 | None:intergenic | 40.0% | |
TTGGGGAGTAAATAAGCTGA+GGG | - | chr1.3:62944957-62944976 | MS.gene21571:intron | 40.0% | |
! | AAGCTGAAAAGTACAGTGCT+TGG | + | chr1.3:62942879-62942898 | None:intergenic | 40.0% |
! | AGCACTGTACTTTTCAGCTT+TGG | - | chr1.3:62942879-62942898 | MS.gene21571:intron | 40.0% |
! | CACTGACCGTTCCTTTAAAA+AGG | - | chr1.3:62944182-62944201 | MS.gene21571:CDS | 40.0% |
! | CTTACTTTGATGGCTTCTCA+TGG | - | chr1.3:62942215-62942234 | MS.gene21571:CDS | 40.0% |
! | GACCGTTCCTTTAAAAAGGT+AGG | - | chr1.3:62944186-62944205 | MS.gene21571:CDS | 40.0% |
! | GCTTTGTTGTCTGACTTGAT+GGG | - | chr1.3:62942990-62943009 | MS.gene21571:intron | 40.0% |
! | TGTTCTTGATGGCTGATAAG+AGG | - | chr1.3:62944731-62944750 | MS.gene21571:intron | 40.0% |
!! | AGCTTTGTTGTCTGACTTGA+TGG | - | chr1.3:62942989-62943008 | MS.gene21571:intron | 40.0% |
!! | GGATTGGCTTTGACTTTCTT+CGG | + | chr1.3:62944631-62944650 | None:intergenic | 40.0% |
!! | TGATGGGTTTGCAACTATCA+GGG | - | chr1.3:62943006-62943025 | MS.gene21571:intron | 40.0% |
!! | TGGGCTTATTTGGCTTTCTT+GGG | - | chr1.3:62944939-62944958 | MS.gene21571:CDS | 40.0% |
!! | TTGATGGGTTTGCAACTATC+AGG | - | chr1.3:62943005-62943024 | MS.gene21571:intron | 40.0% |
!! | TTGGGCTTATTTGGCTTTCT+TGG | - | chr1.3:62944938-62944957 | MS.gene21571:CDS | 40.0% |
!!! | TCTGGTTTTGGTGCATAACA+AGG | + | chr1.3:62942375-62942394 | None:intergenic | 40.0% |
AAAAGAAAGTAGCCAGGGAG+AGG | - | chr1.3:62944665-62944684 | MS.gene21571:intron | 45.0% | |
AAAGAAAGTAGCCAGGGAGA+GGG | - | chr1.3:62944666-62944685 | MS.gene21571:intron | 45.0% | |
AAGGTCTTCAACACAGGGTT+GGG | - | chr1.3:62944913-62944932 | MS.gene21571:CDS | 45.0% | |
AGACCTTAGACGCACAAAAG+GGG | + | chr1.3:62944900-62944919 | None:intergenic | 45.0% | |
AGAGTGAATATCCAATGCGG+GGG | + | chr1.3:62944161-62944180 | None:intergenic | 45.0% | |
AGTCACATGCATATGGGATC+AGG | + | chr1.3:62943792-62943811 | None:intergenic | 45.0% | |
CATGTTACTCTTGTCTTGCC+AGG | - | chr1.3:62943680-62943699 | MS.gene21571:intron | 45.0% | |
CTCCTTACACAATTCTCTGC+TGG | - | chr1.3:62944811-62944830 | MS.gene21571:CDS | 45.0% | |
CTTGGGGAGTAAATAAGCTG+AGG | - | chr1.3:62944956-62944975 | MS.gene21571:intron | 45.0% | |
GAAGACCTTAGACGCACAAA+AGG | + | chr1.3:62944902-62944921 | None:intergenic | 45.0% | |
GAGAATTGTGTAAGGAGCTC+GGG | + | chr1.3:62944808-62944827 | None:intergenic | 45.0% | |
GCACGTATGCGTAACTTCAA+AGG | + | chr1.3:62943996-62944015 | None:intergenic | 45.0% | |
GGACTCACTATGCAAGAACA+AGG | + | chr1.3:62943948-62943967 | None:intergenic | 45.0% | |
TAAGGTCTTCAACACAGGGT+TGG | - | chr1.3:62944912-62944931 | MS.gene21571:CDS | 45.0% | |
TCACTATGCAAGAACAAGGC+AGG | + | chr1.3:62943944-62943963 | None:intergenic | 45.0% | |
TCGGAAACTTAGTTCAGGCA+GGG | + | chr1.3:62943969-62943988 | None:intergenic | 45.0% | |
TGAGAGCCTTCTGTTCTTGA+TGG | - | chr1.3:62944720-62944739 | MS.gene21571:intron | 45.0% | |
TGCCAGCAGAGAATTGTGTA+AGG | + | chr1.3:62944816-62944835 | None:intergenic | 45.0% | |
! | CGTCTAAGGTCTTCAACACA+GGG | - | chr1.3:62944908-62944927 | MS.gene21571:CDS | 45.0% |
! | GTGATCTGCAAACTAGCTTG+CGG | - | chr1.3:62944868-62944887 | MS.gene21571:CDS | 45.0% |
! | TCAACACAGGGTTGGGTTTT+GGG | - | chr1.3:62944920-62944939 | MS.gene21571:CDS | 45.0% |
! | TTCAACACAGGGTTGGGTTT+TGG | - | chr1.3:62944919-62944938 | MS.gene21571:CDS | 45.0% |
!! | CAGGAGTGCTGTGTTAGTTT+GGG | - | chr1.3:62943699-62943718 | MS.gene21571:intron | 45.0% |
!! | GGGCTTATTTGGCTTTCTTG+GGG | - | chr1.3:62944940-62944959 | MS.gene21571:CDS | 45.0% |
!!! | GGTTGGGTTTTGGGCTTATT+TGG | - | chr1.3:62944929-62944948 | MS.gene21571:CDS | 45.0% |
ACTGCTGAAGCAGGTGTAGA+TGG | - | chr1.3:62942957-62942976 | MS.gene21571:intron | 50.0% | |
CAATTCTCTGCTGGCATTGC+TGG | - | chr1.3:62944820-62944839 | MS.gene21571:CDS | 50.0% | |
CAGGAGGAAGCCAATTGTCA+TGG | + | chr1.3:62944225-62944244 | None:intergenic | 50.0% | |
CCAAACTAACACAGCACTCC+TGG | + | chr1.3:62943701-62943720 | None:intergenic | 50.0% | |
GACCTTAGACGCACAAAAGG+GGG | + | chr1.3:62944899-62944918 | None:intergenic | 50.0% | |
GTCGGAAACTTAGTTCAGGC+AGG | + | chr1.3:62943970-62943989 | None:intergenic | 50.0% | |
TCACAGATAGCACGACAGCA+AGG | + | chr1.3:62944852-62944871 | None:intergenic | 50.0% | |
TGCTAGTAGTGGCAGTGCTA+AGG | - | chr1.3:62945091-62945110 | MS.gene21571:CDS | 50.0% | |
! | ACATCTGAGACTGCTGAAGC+AGG | - | chr1.3:62942948-62942967 | MS.gene21571:intron | 50.0% |
! | CTGCAAACTAGCTTGCGGAA+GGG | - | chr1.3:62944873-62944892 | MS.gene21571:CDS | 50.0% |
! | GCGTCTAAGGTCTTCAACAC+AGG | - | chr1.3:62944907-62944926 | MS.gene21571:CDS | 50.0% |
! | TCTGCAAACTAGCTTGCGGA+AGG | - | chr1.3:62944872-62944891 | MS.gene21571:CDS | 50.0% |
!! | ATGGTGCCGGTGATATGTAG+AGG | - | chr1.3:62942735-62942754 | MS.gene21571:intron | 50.0% |
!! | CCAGGAGTGCTGTGTTAGTT+TGG | - | chr1.3:62943698-62943717 | MS.gene21571:intron | 50.0% |
!! | TGGCTGATAAGAGGCATCGT+CGG | - | chr1.3:62944740-62944759 | MS.gene21571:intron | 50.0% |
AGCTGCAGCGTTGCTAGTAG+TGG | - | chr1.3:62945080-62945099 | MS.gene21571:CDS | 55.0% | |
CAATGCGGGGGAAATGCTTC+TGG | + | chr1.3:62944149-62944168 | None:intergenic | 55.0% | |
CTTGAACAGATCCCTCTCCC+TGG | + | chr1.3:62944680-62944699 | None:intergenic | 55.0% | |
TCTGCTGGCATTGCTGGTAC+TGG | - | chr1.3:62944826-62944845 | MS.gene21571:CDS | 55.0% | |
!! | CAGAAGCATTTCCCCCGCAT+TGG | - | chr1.3:62944147-62944166 | MS.gene21571:CDS | 55.0% |
!! | GGCTGATAAGAGGCATCGTC+GGG | - | chr1.3:62944741-62944760 | MS.gene21571:intron | 55.0% |
AGCGCGCGAACAGTGAGCAA+CGG | - | chr1.3:62943600-62943619 | MS.gene21571:intron | 60.0% | |
GCTCACTGTTCGCGCGCTTA+TGG | + | chr1.3:62943598-62943617 | None:intergenic | 60.0% | |
GTAAGGAGCTCGGGAAGCTC+CGG | + | chr1.3:62944799-62944818 | None:intergenic | 60.0% | |
! | GGCCCCCTTTTGTGCGTCTA+AGG | - | chr1.3:62944894-62944913 | MS.gene21571:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 62942200 | 62945122 | 62942200 | ID=MS.gene21571 |
chr1.3 | mRNA | 62942200 | 62945122 | 62942200 | ID=MS.gene21571.t1;Parent=MS.gene21571 |
chr1.3 | exon | 62945057 | 62945122 | 62945057 | ID=MS.gene21571.t1.exon1;Parent=MS.gene21571.t1 |
chr1.3 | CDS | 62945057 | 62945122 | 62945057 | ID=cds.MS.gene21571.t1;Parent=MS.gene21571.t1 |
chr1.3 | exon | 62944788 | 62944968 | 62944788 | ID=MS.gene21571.t1.exon2;Parent=MS.gene21571.t1 |
chr1.3 | CDS | 62944788 | 62944968 | 62944788 | ID=cds.MS.gene21571.t1;Parent=MS.gene21571.t1 |
chr1.3 | exon | 62944040 | 62944454 | 62944040 | ID=MS.gene21571.t1.exon3;Parent=MS.gene21571.t1 |
chr1.3 | CDS | 62944040 | 62944454 | 62944040 | ID=cds.MS.gene21571.t1;Parent=MS.gene21571.t1 |
chr1.3 | exon | 62943119 | 62943199 | 62943119 | ID=MS.gene21571.t1.exon4;Parent=MS.gene21571.t1 |
chr1.3 | CDS | 62943119 | 62943199 | 62943119 | ID=cds.MS.gene21571.t1;Parent=MS.gene21571.t1 |
chr1.3 | exon | 62942200 | 62942695 | 62942200 | ID=MS.gene21571.t1.exon5;Parent=MS.gene21571.t1 |
chr1.3 | CDS | 62942200 | 62942695 | 62942200 | ID=cds.MS.gene21571.t1;Parent=MS.gene21571.t1 |
Gene Sequence |
Protein sequence |