Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21345.t1 | XP_003591628.1 | 93 | 413 | 28 | 1 | 1 | 412 | 1 | 413 | 3.50E-213 | 750.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21345.t1 | G7I2X4 | 93.0 | 413 | 28 | 1 | 1 | 412 | 1 | 413 | 2.5e-213 | 750.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene21345 | 0.808895 | 2.47E-50 | -1.69E-46 |
| MS.gene049369 | MS.gene21345 | 0.809876 | 1.52E-50 | -1.69E-46 |
| MS.gene049396 | MS.gene21345 | 0.876938 | 9.38E-69 | -1.69E-46 |
| MS.gene050216 | MS.gene21345 | 0.80596 | 1.04E-49 | -1.69E-46 |
| MS.gene050323 | MS.gene21345 | 0.819192 | 1.32E-52 | -1.69E-46 |
| MS.gene050502 | MS.gene21345 | 0.81876 | 1.66E-52 | -1.69E-46 |
| MS.gene050662 | MS.gene21345 | 0.801472 | 8.86E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene21345 | 0.808542 | 2.94E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene21345 | 0.817078 | 3.97E-52 | -1.69E-46 |
| MS.gene050871 | MS.gene21345 | 0.821906 | 3.15E-53 | -1.69E-46 |
| MS.gene051874 | MS.gene21345 | 0.825979 | 3.49E-54 | -1.69E-46 |
| MS.gene052822 | MS.gene21345 | 0.802448 | 5.58E-49 | -1.69E-46 |
| MS.gene053018 | MS.gene21345 | 0.810951 | 8.93E-51 | -1.69E-46 |
| MS.gene053449 | MS.gene21345 | 0.812022 | 5.22E-51 | -1.69E-46 |
| MS.gene053479 | MS.gene21345 | 0.801027 | 1.09E-48 | -1.69E-46 |
| MS.gene053505 | MS.gene21345 | 0.848607 | 5.50E-60 | -1.69E-46 |
| MS.gene053574 | MS.gene21345 | 0.813192 | 2.90E-51 | -1.69E-46 |
| MS.gene053626 | MS.gene21345 | 0.843428 | 1.41E-58 | -1.69E-46 |
| MS.gene053824 | MS.gene21345 | 0.805533 | 1.27E-49 | -1.69E-46 |
| MS.gene053916 | MS.gene21345 | 0.840821 | 6.90E-58 | -1.69E-46 |
| MS.gene054003 | MS.gene21345 | 0.831296 | 1.81E-55 | -1.69E-46 |
| MS.gene054564 | MS.gene21345 | 0.809782 | 1.60E-50 | -1.69E-46 |
| MS.gene05494 | MS.gene21345 | 0.827769 | 1.30E-54 | -1.69E-46 |
| MS.gene05505 | MS.gene21345 | 0.833787 | 4.36E-56 | -1.69E-46 |
| MS.gene055224 | MS.gene21345 | 0.816501 | 5.35E-52 | -1.69E-46 |
| MS.gene055909 | MS.gene21345 | 0.823921 | 1.07E-53 | -1.69E-46 |
| MS.gene055911 | MS.gene21345 | 0.811508 | 6.76E-51 | -1.69E-46 |
| MS.gene056046 | MS.gene21345 | 0.818451 | 1.95E-52 | -1.69E-46 |
| MS.gene056387 | MS.gene21345 | 0.824457 | 7.99E-54 | -1.69E-46 |
| MS.gene056422 | MS.gene21345 | 0.829271 | 5.65E-55 | -1.69E-46 |
| MS.gene056448 | MS.gene21345 | 0.815331 | 9.77E-52 | -1.69E-46 |
| MS.gene056487 | MS.gene21345 | 0.816974 | 4.19E-52 | -1.69E-46 |
| MS.gene056504 | MS.gene21345 | 0.802032 | 6.80E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene21345 | 0.810324 | 1.22E-50 | -1.69E-46 |
| MS.gene057076 | MS.gene21345 | 0.802362 | 5.81E-49 | -1.69E-46 |
| MS.gene057086 | MS.gene21345 | 0.814178 | 1.76E-51 | -1.69E-46 |
| MS.gene057734 | MS.gene21345 | 0.819567 | 1.09E-52 | -1.69E-46 |
| MS.gene05787 | MS.gene21345 | 0.831881 | 1.30E-55 | -1.69E-46 |
| MS.gene057926 | MS.gene21345 | 0.819307 | 1.24E-52 | -1.69E-46 |
| MS.gene058075 | MS.gene21345 | 0.837992 | 3.75E-57 | -1.69E-46 |
| MS.gene058157 | MS.gene21345 | 0.83159 | 1.53E-55 | -1.69E-46 |
| MS.gene058459 | MS.gene21345 | 0.80194 | 7.10E-49 | -1.69E-46 |
| MS.gene05913 | MS.gene21345 | 0.80959 | 1.76E-50 | -1.69E-46 |
| MS.gene059305 | MS.gene21345 | 0.808129 | 3.60E-50 | -1.69E-46 |
| MS.gene059367 | MS.gene21345 | 0.83747 | 5.10E-57 | -1.69E-46 |
| MS.gene059368 | MS.gene21345 | 0.826572 | 2.52E-54 | -1.69E-46 |
| MS.gene059667 | MS.gene21345 | 0.807979 | 3.88E-50 | -1.69E-46 |
| MS.gene059711 | MS.gene21345 | 0.815673 | 8.19E-52 | -1.69E-46 |
| MS.gene060482 | MS.gene21345 | 0.813508 | 2.47E-51 | -1.69E-46 |
| MS.gene060778 | MS.gene21345 | 0.8253 | 5.05E-54 | -1.69E-46 |
| MS.gene060837 | MS.gene21345 | 0.824056 | 9.92E-54 | -1.69E-46 |
| MS.gene06097 | MS.gene21345 | 0.850369 | 1.78E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene018063 | MS.gene21345 | PPI |
| MS.gene52739 | MS.gene21345 | PPI |
| MS.gene72916 | MS.gene21345 | PPI |
| MS.gene04697 | MS.gene21345 | PPI |
| MS.gene21345 | MS.gene72916 | PPI |
| MS.gene21571 | MS.gene21345 | PPI |
| MS.gene02970 | MS.gene21345 | PPI |
| MS.gene005686 | MS.gene21345 | PPI |
| MS.gene21345 | MS.gene04697 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21345.t1 | MTR_1g089980 | 92.732 | 399 | 28 | 1 | 1 | 398 | 1 | 399 | 0.0 | 748 |
| MS.gene21345.t1 | MTR_7g094470 | 58.134 | 418 | 167 | 3 | 2 | 412 | 1 | 417 | 7.78e-167 | 474 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21345.t1 | AT4G02920 | 37.209 | 430 | 234 | 11 | 5 | 412 | 3 | 418 | 7.91e-81 | 255 |
| MS.gene21345.t1 | AT4G02920 | 37.441 | 422 | 243 | 10 | 5 | 412 | 3 | 417 | 2.45e-80 | 253 |
| MS.gene21345.t1 | AT1G03340 | 34.444 | 360 | 201 | 8 | 56 | 412 | 58 | 385 | 2.73e-53 | 182 |
Find 82 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATGGGTTTGCAACTTTC+AGG | 0.131456 | 1.4:-71283417 | MS.gene21345:CDS |
| TTCAACACAGGGTTGGGTTT+TGG | 0.134883 | 1.4:-71281536 | MS.gene21345:CDS |
| TTGGGCTTATTTGGCTTTCT+TGG | 0.139996 | 1.4:-71281517 | MS.gene21345:CDS |
| AAATGGTCAAGTCACGTTTA+TGG | 0.221667 | 1.4:-71283271 | MS.gene21345:CDS |
| AAAATTACTGTTCATCTAAA+TGG | 0.237725 | 1.4:-71283288 | MS.gene21345:CDS |
| GAGATGTAGAAAGTCCTATT+TGG | 0.244598 | 1.4:+71283354 | None:intergenic |
| CACTGACCATTCCTTTAAAA+AGG | 0.245242 | 1.4:-71282278 | MS.gene21345:intron |
| TGGGCTTATTTGGCTTTCTT+GGG | 0.252384 | 1.4:-71281516 | MS.gene21345:CDS |
| GATATCAGAGTCCAAATCTT+AGG | 0.281870 | 1.4:-71284019 | MS.gene21345:CDS |
| GATGAATTTAACCTAAGATT+TGG | 0.287708 | 1.4:+71284008 | None:intergenic |
| TGAGAGCCTTCTGTTCTTGA+TGG | 0.290630 | 1.4:-71281735 | MS.gene21345:CDS |
| GATTCAGAAACTTACTTTGA+TGG | 0.292699 | 1.4:-71284217 | MS.gene21345:CDS |
| CAATTCTCTGCTGGCATTGC+TGG | 0.299676 | 1.4:-71281635 | MS.gene21345:CDS |
| CTCTGATATCTAATAATATC+TGG | 0.353756 | 1.4:+71284032 | None:intergenic |
| GGATTGGCTTTGACTTTCTT+CGG | 0.356219 | 1.4:+71281827 | None:intergenic |
| TATCTAATAATATCTGGTTT+TGG | 0.360696 | 1.4:+71284038 | None:intergenic |
| AGCTTTGTTGTCTGACTTGA+TGG | 0.364159 | 1.4:-71283433 | MS.gene21345:CDS |
| AATGGTCAAGTCACGTTTAT+GGG | 0.369340 | 1.4:-71283270 | MS.gene21345:CDS |
| GTTCTTTCACTGAAGAAATC+AGG | 0.382585 | 1.4:-71281683 | MS.gene21345:CDS |
| TCTGCTGGCATTGCTGGTAC+TGG | 0.385638 | 1.4:-71281629 | MS.gene21345:CDS |
| AAGGTCTTCAACACAGGGTT+GGG | 0.391495 | 1.4:-71281542 | MS.gene21345:CDS |
| ATCCTCTCATCTACCCAAAT+AGG | 0.392024 | 1.4:-71283368 | MS.gene21345:CDS |
| ACTGCTGAAGCCGGTGTAGA+TGG | 0.396918 | 1.4:-71283465 | MS.gene21345:CDS |
| ATGATAGGGTTGTCAACAAT+TGG | 0.402315 | 1.4:-71284075 | MS.gene21345:intron |
| AGATGTAGAAAGTCCTATTT+GGG | 0.403362 | 1.4:+71283355 | None:intergenic |
| TGTACATACCTAGTGAAGTA+TGG | 0.405041 | 1.4:+71283153 | None:intergenic |
| GAATCAAGAATGCCATCAAA+AGG | 0.427196 | 1.4:-71283981 | MS.gene21345:CDS |
| AAGCAAGAATGCTGGAAAGA+TGG | 0.436409 | 1.4:-71281459 | MS.gene21345:CDS |
| AGCAAGAATGCTGGAAAGAT+GGG | 0.449740 | 1.4:-71281458 | MS.gene21345:CDS |
| TGTTCTTGATGGCTGATAAG+AGG | 0.453397 | 1.4:-71281724 | MS.gene21345:CDS |
| GAGAATTGTGTAAGGAGCTC+GGG | 0.454630 | 1.4:+71281650 | None:intergenic |
| TGATGGGTTTGCAACTTTCA+GGG | 0.455500 | 1.4:-71283416 | MS.gene21345:CDS |
| GAAGACCTTAGACGCACAAA+AGG | 0.465886 | 1.4:+71281556 | None:intergenic |
| GCGTCTAAGGTCTTCAACAC+AGG | 0.476430 | 1.4:-71281548 | MS.gene21345:CDS |
| CTTACTTTGATGGCTTCTCA+TGG | 0.481501 | 1.4:-71284207 | MS.gene21345:CDS |
| GGCTGATAAGAGGCATCGTC+GGG | 0.482476 | 1.4:-71281714 | MS.gene21345:CDS |
| TTCACTGAAGAAATCAGGTC+CGG | 0.487415 | 1.4:-71281678 | MS.gene21345:CDS |
| TGCTAGTAGTGGCAGTGCTA+AGG | 0.499557 | 1.4:-71281364 | MS.gene21345:CDS |
| CTCCTTACACAATTCTCTGC+TGG | 0.505017 | 1.4:-71281644 | MS.gene21345:CDS |
| GGGCTTATTTGGCTTTCTTG+GGG | 0.508276 | 1.4:-71281515 | MS.gene21345:CDS |
| GTAAGGAGCTCGGGAAGCTC+CGG | 0.511742 | 1.4:+71281659 | None:intergenic |
| GTATCAAAACGCACACATAC+AGG | 0.515015 | 1.4:-71283198 | MS.gene21345:CDS |
| AAGACCTTAGACGCACAAAA+GGG | 0.516732 | 1.4:+71281557 | None:intergenic |
| TTCATGGCATATTCTTGAGA+TGG | 0.519316 | 1.4:+71284180 | None:intergenic |
| AAGCTGAAAAGTACAGTGCT+TGG | 0.520108 | 1.4:+71283546 | None:intergenic |
| AGAGGATGCAATGATATTTG+AGG | 0.523196 | 1.4:+71283384 | None:intergenic |
| TAAGGTCTTCAACACAGGGT+TGG | 0.534621 | 1.4:-71281543 | MS.gene21345:CDS |
| AGAGAATTGTGTAAGGAGCT+CGG | 0.542826 | 1.4:+71281649 | None:intergenic |
| AAAAGAAAGTAGCCAGGGAG+AGG | 0.544026 | 1.4:-71281790 | MS.gene21345:CDS |
| ATCTCAAGAATATGCCATGA+AGG | 0.545054 | 1.4:-71284178 | MS.gene21345:intron |
| CTTGAACAGATCCCTCTCCC+TGG | 0.545602 | 1.4:+71281778 | None:intergenic |
| AGCTGCAGCGTTGCTAGTAG+TGG | 0.549465 | 1.4:-71281375 | MS.gene21345:CDS |
| GTTAACATAAGCAAGAATGC+TGG | 0.550226 | 1.4:-71281467 | MS.gene21345:CDS |
| CCAACGGTTATTGATGTACA+AGG | 0.561376 | 1.4:-71283909 | MS.gene21345:intron |
| GCTTTGTTGTCTGACTTGAT+GGG | 0.563096 | 1.4:-71283432 | MS.gene21345:CDS |
| CCTTGTACATCAATAACCGT+TGG | 0.573161 | 1.4:+71283909 | None:intergenic |
| TGCCAGCAGAGAATTGTGTA+AGG | 0.578242 | 1.4:+71281642 | None:intergenic |
| GCTGAATATAAATGAAGTAG+AGG | 0.580301 | 1.4:-71282337 | MS.gene21345:CDS |
| TGGCTGATAAGAGGCATCGT+CGG | 0.580551 | 1.4:-71281715 | MS.gene21345:CDS |
| CTTGGGGAGTAAATAAGCTG+AGG | 0.580784 | 1.4:-71281499 | MS.gene21345:CDS |
| ACATCTAAGACTGCTGAAGC+CGG | 0.581544 | 1.4:-71283474 | MS.gene21345:CDS |
| AATCAAGAATGCCATCAAAA+GGG | 0.582039 | 1.4:-71283980 | MS.gene21345:CDS |
| TATCAGCCATCAAGAACAGA+AGG | 0.589403 | 1.4:+71281729 | None:intergenic |
| TATTTCAGCTCTAAAGCCAA+CGG | 0.594762 | 1.4:-71283925 | MS.gene21345:CDS |
| TGCTTGTTCCATACTTCACT+AGG | 0.596244 | 1.4:-71283161 | MS.gene21345:intron |
| TTTACGAATACCATCTACAC+CGG | 0.597201 | 1.4:+71283455 | None:intergenic |
| AAAGAAAGTAGCCAGGGAGA+GGG | 0.598067 | 1.4:-71281789 | MS.gene21345:CDS |
| GACCTTAGACGCACAAAAGG+GGG | 0.599512 | 1.4:+71281559 | None:intergenic |
| TCTGCAAACTAGCTTGTGGA+AGG | 0.600269 | 1.4:-71281583 | MS.gene21345:CDS |
| GTAGAGTGAATATCCAATGT+GGG | 0.603918 | 1.4:+71282300 | None:intergenic |
| CGTCTAAGGTCTTCAACACA+GGG | 0.609157 | 1.4:-71281547 | MS.gene21345:CDS |
| TTGGGGAGTAAATAAGCTGA+GGG | 0.614442 | 1.4:-71281498 | MS.gene21345:CDS |
| GTCCTATTTGGGTAGATGAG+AGG | 0.616451 | 1.4:+71283366 | None:intergenic |
| GTGATCTGCAAACTAGCTTG+TGG | 0.628517 | 1.4:-71281587 | MS.gene21345:CDS |
| AAAGATGGGATTGAAAGATG+AGG | 0.631344 | 1.4:-71281444 | MS.gene21345:CDS |
| AGACCTTAGACGCACAAAAG+GGG | 0.635020 | 1.4:+71281558 | None:intergenic |
| TAGAGTGAATATCCAATGTG+GGG | 0.640007 | 1.4:+71282301 | None:intergenic |
| TGTAGAGTGAATATCCAATG+TGG | 0.652502 | 1.4:+71282299 | None:intergenic |
| CTGCAAACTAGCTTGTGGAA+GGG | 0.663424 | 1.4:-71281582 | MS.gene21345:CDS |
| CAAGAATGCCATCAAAAGGG+TGG | 0.664333 | 1.4:-71283977 | MS.gene21345:CDS |
| TCACAGATAGCACGACAGCA+AGG | 0.673650 | 1.4:+71281606 | None:intergenic |
| AGAGTGAATATCCAATGTGG+GGG | 0.681745 | 1.4:+71282302 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTATATTTATAATTAAATG+CGG | + | chr1.4:71282575-71282594 | None:intergenic | 10.0% |
| !!! | TGATTTTTTTTTTTATGATA+GGG | - | chr1.4:71281488-71281507 | MS.gene21345:CDS | 10.0% |
| !!! | TTGATTTTTTTTTTTATGAT+AGG | - | chr1.4:71281487-71281506 | MS.gene21345:CDS | 10.0% |
| !! | AAAATGCATAAAATTAAAGT+CGG | + | chr1.4:71283502-71283521 | None:intergenic | 15.0% |
| !! | ATAATAGAAAACAATATTCA+GGG | - | chr1.4:71282508-71282527 | MS.gene21345:intron | 15.0% |
| !! | ATATACACAAATTCAATAAA+CGG | + | chr1.4:71281702-71281721 | None:intergenic | 15.0% |
| !! | TAACATCAAATTTAAAAACT+TGG | - | chr1.4:71282591-71282610 | MS.gene21345:intron | 15.0% |
| !! | AAAATTACTGTTCATCTAAA+TGG | - | chr1.4:71282289-71282308 | MS.gene21345:CDS | 20.0% |
| !! | AAATGCATAAAATTAAAGTC+GGG | + | chr1.4:71283501-71283520 | None:intergenic | 20.0% |
| !! | CAAGAATAGAATATTGAATA+TGG | + | chr1.4:71283171-71283190 | None:intergenic | 20.0% |
| !! | CATAATAGAAAACAATATTC+AGG | - | chr1.4:71282507-71282526 | MS.gene21345:intron | 20.0% |
| !! | CTCATAAAAAATATACAACA+TGG | + | chr1.4:71281821-71281840 | None:intergenic | 20.0% |
| !! | GTTAAAGTAGTAAAAATCAA+TGG | - | chr1.4:71283035-71283054 | MS.gene21345:intron | 20.0% |
| !! | TATACACAAATTCAATAAAC+GGG | + | chr1.4:71281701-71281720 | None:intergenic | 20.0% |
| !! | TGTGATCAATTGAATTTAAA+CGG | + | chr1.4:71282459-71282478 | None:intergenic | 20.0% |
| !!! | AACAGTAATTTTTGAACTAA+GGG | + | chr1.4:71282281-71282300 | None:intergenic | 20.0% |
| !!! | AAGTAATGTAACTTATCTTT+TGG | - | chr1.4:71281994-71282013 | MS.gene21345:intron | 20.0% |
| !!! | CACATTTAAAAATGCATTTT+TGG | + | chr1.4:71282617-71282636 | None:intergenic | 20.0% |
| !!! | TACTAATAATTTTACCTTCA+TGG | + | chr1.4:71281416-71281435 | None:intergenic | 20.0% |
| !!! | TATCTAATAATATCTGGTTT+TGG | + | chr1.4:71281542-71281561 | None:intergenic | 20.0% |
| !!! | TCGAATAATTTTATCTAACT+CGG | - | chr1.4:71282959-71282978 | MS.gene21345:intron | 20.0% |
| ! | ATAGCTGTAAATTTGATCAT+TGG | - | chr1.4:71282858-71282877 | MS.gene21345:intron | 25.0% |
| ! | ATATTAATGCTTTATCATGC+AGG | + | chr1.4:71282681-71282700 | None:intergenic | 25.0% |
| ! | CTCTGATATCTAATAATATC+TGG | + | chr1.4:71281548-71281567 | None:intergenic | 25.0% |
| ! | GAATATTACTATATCAGTCA+TGG | - | chr1.4:71281871-71281890 | MS.gene21345:intron | 25.0% |
| ! | GATGAATTTAACCTAAGATT+TGG | + | chr1.4:71281572-71281591 | None:intergenic | 25.0% |
| ! | TAGCTGTAAATTTGATCATT+GGG | - | chr1.4:71282859-71282878 | MS.gene21345:intron | 25.0% |
| ! | TCTTGAAAAAAATCAAGCAA+AGG | + | chr1.4:71282253-71282272 | None:intergenic | 25.0% |
| ! | TTTAAAAAGGTAGGTAGAAT+AGG | - | chr1.4:71283312-71283331 | MS.gene21345:CDS | 25.0% |
| ! | TTTCTCATAAAATTTGAGCT+AGG | + | chr1.4:71283556-71283575 | None:intergenic | 25.0% |
| !! | ACTTATGTTGCTAAATCTTT+TGG | - | chr1.4:71281929-71281948 | MS.gene21345:intron | 25.0% |
| !! | GAACAGTAATTTTTGAACTA+AGG | + | chr1.4:71282282-71282301 | None:intergenic | 25.0% |
| !! | TATTCTACCTACCTTTTTAA+AGG | + | chr1.4:71283313-71283332 | None:intergenic | 25.0% |
| !!! | AGGGAATCATGTTTTATTTT+TGG | - | chr1.4:71283589-71283608 | MS.gene21345:intron | 25.0% |
| !!! | GGGAATCATGTTTTATTTTT+GGG | - | chr1.4:71283590-71283609 | MS.gene21345:intron | 25.0% |
| !!! | TTCTTTTTCTTTTTTCGTGA+TGG | + | chr1.4:71283774-71283793 | None:intergenic | 25.0% |
| AAAAGAAAAAGAAAGTAGCC+AGG | - | chr1.4:71283781-71283800 | MS.gene21345:intron | 30.0% | |
| AAAGAAAAAGAAAGTAGCCA+GGG | - | chr1.4:71283782-71283801 | MS.gene21345:intron | 30.0% | |
| AATCAAGAATGCCATCAAAA+GGG | - | chr1.4:71281597-71281616 | MS.gene21345:CDS | 30.0% | |
| AGATGTAGAAAGTCCTATTT+GGG | + | chr1.4:71282225-71282244 | None:intergenic | 30.0% | |
| AGTAGAATGCTTGAATTGAA+AGG | - | chr1.4:71281785-71281804 | MS.gene21345:CDS | 30.0% | |
| CTGTAAAACAAATGGATCAT+TGG | - | chr1.4:71283437-71283456 | MS.gene21345:CDS | 30.0% | |
| GAGAAATAATCATCAGATGA+GGG | - | chr1.4:71283570-71283589 | MS.gene21345:intron | 30.0% | |
| GATTCAGAAACTTACTTTGA+TGG | - | chr1.4:71281360-71281379 | MS.gene21345:CDS | 30.0% | |
| GCTGAATATAAATGAAGTAG+AGG | - | chr1.4:71283240-71283259 | MS.gene21345:CDS | 30.0% | |
| TAAATACTGTGATCACTGTA+TGG | + | chr1.4:71283684-71283703 | None:intergenic | 30.0% | |
| TACGCAAAATATGCTGTTAT+AGG | - | chr1.4:71283371-71283390 | MS.gene21345:CDS | 30.0% | |
| TCAAGCATTCTACTAATACA+TGG | + | chr1.4:71281779-71281798 | None:intergenic | 30.0% | |
| TCTATCCTCTGTAAAACAAA+TGG | - | chr1.4:71283429-71283448 | MS.gene21345:CDS | 30.0% | |
| TGAGAAATAATCATCAGATG+AGG | - | chr1.4:71283569-71283588 | MS.gene21345:intron | 30.0% | |
| TGAGGAAATGATTCAAAAAG+TGG | - | chr1.4:71284151-71284170 | MS.gene21345:intron | 30.0% | |
| TTTGTTTCCTTCATATGATG+TGG | - | chr1.4:71283519-71283538 | MS.gene21345:CDS | 30.0% | |
| ! | AATAGGTTTTCCATGACAAT+TGG | - | chr1.4:71283329-71283348 | MS.gene21345:CDS | 30.0% |
| ! | ACTTTTGCTGAAAATCTACA+TGG | - | chr1.4:71283213-71283232 | MS.gene21345:CDS | 30.0% |
| ! | ATTTTGCGTATGTCAAATTC+AGG | + | chr1.4:71283361-71283380 | None:intergenic | 30.0% |
| !! | GAGAGCTTTTACTCTAAAAA+TGG | - | chr1.4:71283463-71283482 | MS.gene21345:CDS | 30.0% |
| !! | TACCTACCTTTTTAAAGGAA+TGG | + | chr1.4:71283308-71283327 | None:intergenic | 30.0% |
| !!! | ATGATCCATTTGTTTTACAG+AGG | + | chr1.4:71283437-71283456 | None:intergenic | 30.0% |
| !!! | TTTCTTTTTTCGTGATGGAT+TGG | + | chr1.4:71283769-71283788 | None:intergenic | 30.0% |
| AAAACAGAGTCACATGCATA+TGG | + | chr1.4:71282912-71282931 | None:intergenic | 35.0% | |
| AAACAGAGTCACATGCATAT+GGG | + | chr1.4:71282911-71282930 | None:intergenic | 35.0% | |
| AAAGATGGGATTGAAAGATG+AGG | - | chr1.4:71284133-71284152 | MS.gene21345:intron | 35.0% | |
| AAATGGTCAAGTCACGTTTA+TGG | - | chr1.4:71282306-71282325 | MS.gene21345:CDS | 35.0% | |
| AACAATATTCAGGGACTTCT+TGG | - | chr1.4:71282517-71282536 | MS.gene21345:intron | 35.0% | |
| AATGGTCAAGTCACGTTTAT+GGG | - | chr1.4:71282307-71282326 | MS.gene21345:CDS | 35.0% | |
| ACTCAATCCACATCATATGA+AGG | + | chr1.4:71283529-71283548 | None:intergenic | 35.0% | |
| AGAGGATGCAATGATATTTG+AGG | + | chr1.4:71282196-71282215 | None:intergenic | 35.0% | |
| ATCTCAAGAATATGCCATGA+AGG | - | chr1.4:71281399-71281418 | MS.gene21345:CDS | 35.0% | |
| ATGATAGGGTTGTCAACAAT+TGG | - | chr1.4:71281502-71281521 | MS.gene21345:CDS | 35.0% | |
| CACATGAAATCCTTCTGTTT+GGG | - | chr1.4:71282475-71282494 | MS.gene21345:intron | 35.0% | |
| CGGCAACAAATACAAAAATC+AGG | - | chr1.4:71282979-71282998 | MS.gene21345:intron | 35.0% | |
| GAATCAAGAATGCCATCAAA+AGG | - | chr1.4:71281596-71281615 | MS.gene21345:CDS | 35.0% | |
| GAGATGTAGAAAGTCCTATT+TGG | + | chr1.4:71282226-71282245 | None:intergenic | 35.0% | |
| GATATCAGAGTCCAAATCTT+AGG | - | chr1.4:71281558-71281577 | MS.gene21345:CDS | 35.0% | |
| GTAGAGTGAATATCCAATGT+GGG | + | chr1.4:71283280-71283299 | None:intergenic | 35.0% | |
| GTTAACATAAGCAAGAATGC+TGG | - | chr1.4:71284110-71284129 | MS.gene21345:intron | 35.0% | |
| GTTCTTTCACTGAAGAAATC+AGG | - | chr1.4:71283894-71283913 | MS.gene21345:intron | 35.0% | |
| TAGAGTGAATATCCAATGTG+GGG | + | chr1.4:71283279-71283298 | None:intergenic | 35.0% | |
| TCACATGAAATCCTTCTGTT+TGG | - | chr1.4:71282474-71282493 | MS.gene21345:intron | 35.0% | |
| TCACTAGGTATGTACATATG+TGG | - | chr1.4:71282431-71282450 | MS.gene21345:intron | 35.0% | |
| TGTACATACCTAGTGAAGTA+TGG | + | chr1.4:71282427-71282446 | None:intergenic | 35.0% | |
| TGTAGAGTGAATATCCAATG+TGG | + | chr1.4:71283281-71283300 | None:intergenic | 35.0% | |
| TTCATGGCATATTCTTGAGA+TGG | + | chr1.4:71281400-71281419 | None:intergenic | 35.0% | |
| TTGAGTGTATTGTCTGATAC+TGG | - | chr1.4:71282644-71282663 | MS.gene21345:intron | 35.0% | |
| TTTACGAATACCATCTACAC+CGG | + | chr1.4:71282125-71282144 | None:intergenic | 35.0% | |
| ! | CACTGACCATTCCTTTAAAA+AGG | - | chr1.4:71283299-71283318 | MS.gene21345:CDS | 35.0% |
| ! | CATATGATGTGGATTGAGTT+AGG | - | chr1.4:71283530-71283549 | MS.gene21345:CDS | 35.0% |
| ! | GACCATTCCTTTAAAAAGGT+AGG | - | chr1.4:71283303-71283322 | MS.gene21345:CDS | 35.0% |
| !! | CTGTGAAGTTTTATCATGCT+CGG | + | chr1.4:71282077-71282096 | None:intergenic | 35.0% |
| !! | TATTTCAGCTCTAAAGCCAA+CGG | - | chr1.4:71281652-71281671 | MS.gene21345:CDS | 35.0% |
| AAGACCTTAGACGCACAAAA+GGG | + | chr1.4:71284023-71284042 | None:intergenic | 40.0% | |
| AAGCAAGAATGCTGGAAAGA+TGG | - | chr1.4:71284118-71284137 | MS.gene21345:intron | 40.0% | |
| AGAGAATTGTGTAAGGAGCT+CGG | + | chr1.4:71283931-71283950 | None:intergenic | 40.0% | |
| AGAGTGAATATCCAATGTGG+GGG | + | chr1.4:71283278-71283297 | None:intergenic | 40.0% | |
| AGCAAGAATGCTGGAAAGAT+GGG | - | chr1.4:71284119-71284138 | MS.gene21345:intron | 40.0% | |
| AGTGTATTGTCTGATACTGG+AGG | - | chr1.4:71282647-71282666 | MS.gene21345:intron | 40.0% | |
| ATCCTCTCATCTACCCAAAT+AGG | - | chr1.4:71282209-71282228 | MS.gene21345:intron | 40.0% | |
| CCAACGGTTATTGATGTACA+AGG | - | chr1.4:71281668-71281687 | MS.gene21345:CDS | 40.0% | |
| CCTTGTACATCAATAACCGT+TGG | + | chr1.4:71281671-71281690 | None:intergenic | 40.0% | |
| GACAAAGTAACCCAAACAGA+AGG | + | chr1.4:71282488-71282507 | None:intergenic | 40.0% | |
| GACAATCCTCTACATATCAC+CGG | + | chr1.4:71281899-71281918 | None:intergenic | 40.0% | |
| GCACATGAGACTATCAACAA+TGG | + | chr1.4:71283659-71283678 | None:intergenic | 40.0% | |
| GCGTAACTTCAAAGGTTTGT+CGG | + | chr1.4:71283105-71283124 | None:intergenic | 40.0% | |
| GTATCAAAACGCACACATAC+AGG | - | chr1.4:71282379-71282398 | MS.gene21345:intron | 40.0% | |
| GTTTGTCGGAAACTTAGTTC+AGG | + | chr1.4:71283091-71283110 | None:intergenic | 40.0% | |
| TACTATATCAGTCATGGTGC+CGG | - | chr1.4:71281877-71281896 | MS.gene21345:intron | 40.0% | |
| TATCAGCCATCAAGAACAGA+AGG | + | chr1.4:71283851-71283870 | None:intergenic | 40.0% | |
| TGCTGAAAATCTACATGGAC+AGG | - | chr1.4:71283218-71283237 | MS.gene21345:CDS | 40.0% | |
| TGCTTGTTCCATACTTCACT+AGG | - | chr1.4:71282416-71282435 | MS.gene21345:intron | 40.0% | |
| TTCACTGAAGAAATCAGGTC+CGG | - | chr1.4:71283899-71283918 | MS.gene21345:intron | 40.0% | |
| TTGCGTATGTCAAATTCAGG+AGG | + | chr1.4:71283358-71283377 | None:intergenic | 40.0% | |
| TTGGGGAGTAAATAAGCTGA+GGG | - | chr1.4:71284079-71284098 | MS.gene21345:intron | 40.0% | |
| ! | AAGCTGAAAAGTACAGTGCT+TGG | + | chr1.4:71282034-71282053 | None:intergenic | 40.0% |
| ! | AGCACTGTACTTTTCAGCTT+TGG | - | chr1.4:71282034-71282053 | MS.gene21345:intron | 40.0% |
| ! | CTTACTTTGATGGCTTCTCA+TGG | - | chr1.4:71281370-71281389 | MS.gene21345:CDS | 40.0% |
| ! | GAATTGAACCACCCTTTTGA+TGG | + | chr1.4:71281611-71281630 | None:intergenic | 40.0% |
| ! | GCTTTGTTGTCTGACTTGAT+GGG | - | chr1.4:71282145-71282164 | MS.gene21345:intron | 40.0% |
| ! | TGTTCTTGATGGCTGATAAG+AGG | - | chr1.4:71283853-71283872 | MS.gene21345:intron | 40.0% |
| !! | AGCTTTGTTGTCTGACTTGA+TGG | - | chr1.4:71282144-71282163 | MS.gene21345:intron | 40.0% |
| !! | GGATTGGCTTTGACTTTCTT+CGG | + | chr1.4:71283753-71283772 | None:intergenic | 40.0% |
| !! | TGATGGGTTTGCAACTTTCA+GGG | - | chr1.4:71282161-71282180 | MS.gene21345:intron | 40.0% |
| !! | TGGGCTTATTTGGCTTTCTT+GGG | - | chr1.4:71284061-71284080 | MS.gene21345:CDS | 40.0% |
| !! | TTGATGGGTTTGCAACTTTC+AGG | - | chr1.4:71282160-71282179 | MS.gene21345:intron | 40.0% |
| !! | TTGGGCTTATTTGGCTTTCT+TGG | - | chr1.4:71284060-71284079 | MS.gene21345:CDS | 40.0% |
| !!! | TCTGGTTTTGGTGCATAACA+AGG | + | chr1.4:71281530-71281549 | None:intergenic | 40.0% |
| AAAAGAAAGTAGCCAGGGAG+AGG | - | chr1.4:71283787-71283806 | MS.gene21345:intron | 45.0% | |
| AAAGAAAGTAGCCAGGGAGA+GGG | - | chr1.4:71283788-71283807 | MS.gene21345:intron | 45.0% | |
| AAGGTCTTCAACACAGGGTT+GGG | - | chr1.4:71284035-71284054 | MS.gene21345:CDS | 45.0% | |
| AGACCTTAGACGCACAAAAG+GGG | + | chr1.4:71284022-71284041 | None:intergenic | 45.0% | |
| AGTCACATGCATATGGGATC+AGG | + | chr1.4:71282905-71282924 | None:intergenic | 45.0% | |
| CAAGAATGCCATCAAAAGGG+TGG | - | chr1.4:71281600-71281619 | MS.gene21345:CDS | 45.0% | |
| CAGGAGGAAACCAATTGTCA+TGG | + | chr1.4:71283342-71283361 | None:intergenic | 45.0% | |
| CTCCTTACACAATTCTCTGC+TGG | - | chr1.4:71283933-71283952 | MS.gene21345:CDS | 45.0% | |
| CTTGGGGAGTAAATAAGCTG+AGG | - | chr1.4:71284078-71284097 | MS.gene21345:intron | 45.0% | |
| GAAGACCTTAGACGCACAAA+AGG | + | chr1.4:71284024-71284043 | None:intergenic | 45.0% | |
| GAGAATTGTGTAAGGAGCTC+GGG | + | chr1.4:71283930-71283949 | None:intergenic | 45.0% | |
| GGACTCACTATGCAAGAACA+AGG | + | chr1.4:71283065-71283084 | None:intergenic | 45.0% | |
| GTCCTATTTGGGTAGATGAG+AGG | + | chr1.4:71282214-71282233 | None:intergenic | 45.0% | |
| TAAGGTCTTCAACACAGGGT+TGG | - | chr1.4:71284034-71284053 | MS.gene21345:CDS | 45.0% | |
| TCACTATGCAAGAACAAGGC+AGG | + | chr1.4:71283061-71283080 | None:intergenic | 45.0% | |
| TCGGAAACTTAGTTCAGGCA+GGG | + | chr1.4:71283086-71283105 | None:intergenic | 45.0% | |
| TGAGAGCCTTCTGTTCTTGA+TGG | - | chr1.4:71283842-71283861 | MS.gene21345:intron | 45.0% | |
| TGCCAGCAGAGAATTGTGTA+AGG | + | chr1.4:71283938-71283957 | None:intergenic | 45.0% | |
| ! | ACATCTAAGACTGCTGAAGC+CGG | - | chr1.4:71282103-71282122 | MS.gene21345:intron | 45.0% |
| ! | CGTCTAAGGTCTTCAACACA+GGG | - | chr1.4:71284030-71284049 | MS.gene21345:CDS | 45.0% |
| ! | CTGCAAACTAGCTTGTGGAA+GGG | - | chr1.4:71283995-71284014 | MS.gene21345:CDS | 45.0% |
| ! | GTGATCTGCAAACTAGCTTG+TGG | - | chr1.4:71283990-71284009 | MS.gene21345:CDS | 45.0% |
| ! | TCAACACAGGGTTGGGTTTT+GGG | - | chr1.4:71284042-71284061 | MS.gene21345:CDS | 45.0% |
| ! | TCTGCAAACTAGCTTGTGGA+AGG | - | chr1.4:71283994-71284013 | MS.gene21345:CDS | 45.0% |
| ! | TTCAACACAGGGTTGGGTTT+TGG | - | chr1.4:71284041-71284060 | MS.gene21345:CDS | 45.0% |
| !! | CAGGAGTGCTGTGTTAGTTT+GGG | - | chr1.4:71282812-71282831 | MS.gene21345:intron | 45.0% |
| !! | CATGTTAGTCTTGTCTTGCC+AGG | - | chr1.4:71282793-71282812 | MS.gene21345:intron | 45.0% |
| !! | GGGCTTATTTGGCTTTCTTG+GGG | - | chr1.4:71284062-71284081 | MS.gene21345:CDS | 45.0% |
| !!! | GGTTGGGTTTTGGGCTTATT+TGG | - | chr1.4:71284051-71284070 | MS.gene21345:CDS | 45.0% |
| CAATGTGGGGGAAATGCTTC+TGG | + | chr1.4:71283266-71283285 | None:intergenic | 50.0% | |
| CAATTCTCTGCTGGCATTGC+TGG | - | chr1.4:71283942-71283961 | MS.gene21345:CDS | 50.0% | |
| CCAAACTAACACAGCACTCC+TGG | + | chr1.4:71282814-71282833 | None:intergenic | 50.0% | |
| GACCTTAGACGCACAAAAGG+GGG | + | chr1.4:71284021-71284040 | None:intergenic | 50.0% | |
| GCACGTGTGCGTAACTTCAA+AGG | + | chr1.4:71283113-71283132 | None:intergenic | 50.0% | |
| GTCGGAAACTTAGTTCAGGC+AGG | + | chr1.4:71283087-71283106 | None:intergenic | 50.0% | |
| TCACAGATAGCACGACAGCA+AGG | + | chr1.4:71283974-71283993 | None:intergenic | 50.0% | |
| TGCTAGTAGTGGCAGTGCTA+AGG | - | chr1.4:71284213-71284232 | MS.gene21345:CDS | 50.0% | |
| ! | GCGTCTAAGGTCTTCAACAC+AGG | - | chr1.4:71284029-71284048 | MS.gene21345:CDS | 50.0% |
| !! | ATGGTGCCGGTGATATGTAG+AGG | - | chr1.4:71281890-71281909 | MS.gene21345:intron | 50.0% |
| !! | CAGAAGCATTTCCCCCACAT+TGG | - | chr1.4:71283264-71283283 | MS.gene21345:CDS | 50.0% |
| !! | CCAGGAGTGCTGTGTTAGTT+TGG | - | chr1.4:71282811-71282830 | MS.gene21345:intron | 50.0% |
| !! | TGGCTGATAAGAGGCATCGT+CGG | - | chr1.4:71283862-71283881 | MS.gene21345:intron | 50.0% |
| ACTGCTGAAGCCGGTGTAGA+TGG | - | chr1.4:71282112-71282131 | MS.gene21345:intron | 55.0% | |
| AGCTGCAGCGTTGCTAGTAG+TGG | - | chr1.4:71284202-71284221 | MS.gene21345:CDS | 55.0% | |
| CTTGAACAGATCCCTCTCCC+TGG | + | chr1.4:71283802-71283821 | None:intergenic | 55.0% | |
| TCTGCTGGCATTGCTGGTAC+TGG | - | chr1.4:71283948-71283967 | MS.gene21345:CDS | 55.0% | |
| !! | GGCTGATAAGAGGCATCGTC+GGG | - | chr1.4:71283863-71283882 | MS.gene21345:intron | 55.0% |
| GCTCACTGTTCGCGCGCTTA+TGG | + | chr1.4:71282753-71282772 | None:intergenic | 60.0% | |
| GTAAGGAGCTCGGGAAGCTC+CGG | + | chr1.4:71283921-71283940 | None:intergenic | 60.0% | |
| ! | GGCCCCCTTTTGTGCGTCTA+AGG | - | chr1.4:71284016-71284035 | MS.gene21345:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 71281355 | 71284244 | 71281355 | ID=MS.gene21345 |
| chr1.4 | mRNA | 71281355 | 71284244 | 71281355 | ID=MS.gene21345.t1;Parent=MS.gene21345 |
| chr1.4 | exon | 71284179 | 71284244 | 71284179 | ID=MS.gene21345.t1.exon1;Parent=MS.gene21345.t1 |
| chr1.4 | CDS | 71284179 | 71284244 | 71284179 | ID=cds.MS.gene21345.t1;Parent=MS.gene21345.t1 |
| chr1.4 | exon | 71283910 | 71284090 | 71283910 | ID=MS.gene21345.t1.exon2;Parent=MS.gene21345.t1 |
| chr1.4 | CDS | 71283910 | 71284090 | 71283910 | ID=cds.MS.gene21345.t1;Parent=MS.gene21345.t1 |
| chr1.4 | exon | 71283162 | 71283576 | 71283162 | ID=MS.gene21345.t1.exon3;Parent=MS.gene21345.t1 |
| chr1.4 | CDS | 71283162 | 71283576 | 71283162 | ID=cds.MS.gene21345.t1;Parent=MS.gene21345.t1 |
| chr1.4 | exon | 71282279 | 71282359 | 71282279 | ID=MS.gene21345.t1.exon4;Parent=MS.gene21345.t1 |
| chr1.4 | CDS | 71282279 | 71282359 | 71282279 | ID=cds.MS.gene21345.t1;Parent=MS.gene21345.t1 |
| chr1.4 | exon | 71281355 | 71281850 | 71281355 | ID=MS.gene21345.t1.exon5;Parent=MS.gene21345.t1 |
| chr1.4 | CDS | 71281355 | 71281850 | 71281355 | ID=cds.MS.gene21345.t1;Parent=MS.gene21345.t1 |
| Gene Sequence |
| Protein sequence |
