AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029766

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029766.t1 MTR_1g063060 100.000 390 0 0 1 390 19 408 0.0 805
MS.gene029766.t1 MTR_1g063060 100.000 390 0 0 1 390 1 390 0.0 805
MS.gene029766.t1 MTR_7g102120 94.103 390 23 0 1 390 1 390 0.0 740
MS.gene029766.t1 MTR_4g123810 88.601 386 44 0 2 387 4 389 0.0 696
MS.gene029766.t1 MTR_7g110310 86.788 386 51 0 2 387 3 388 0.0 693
MS.gene029766.t1 MTR_2g046710 88.083 386 46 0 2 387 4 389 0.0 692
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029766.t1 AT2G36880 92.564 390 29 0 1 390 1 390 0.0 733
MS.gene029766.t1 AT2G36880 92.564 390 29 0 1 390 1 390 0.0 733
MS.gene029766.t1 AT3G17390 88.114 387 46 0 1 387 1 387 0.0 696
MS.gene029766.t1 AT4G01850 87.597 387 48 0 1 387 1 387 0.0 692
MS.gene029766.t1 AT4G01850 87.597 387 48 0 1 387 1 387 0.0 692
MS.gene029766.t1 AT1G02500 87.597 387 48 0 1 387 1 387 0.0 688
MS.gene029766.t1 AT1G02500 87.597 387 48 0 1 387 1 387 0.0 688

Find 119 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCCAGATAAGGATATTT+TGG 0.191529 1.2:-48095425 MS.gene029766:CDS
ACTGCTGCTTACGGGCATTT+TGG 0.206540 1.2:-48095313 MS.gene029766:CDS
AGCAAGAAGCCTGAGGAAAT+TGG 0.257775 1.2:-48096072 MS.gene029766:CDS
ACTAACATGGTTATGGTCTT+TGG 0.278992 1.2:-48096264 MS.gene029766:CDS
TGAACTCCTTGAGCAATATC+AGG 0.302469 1.2:+48096105 None:intergenic
GCCCGTAAGCAGCAGTCTTC+TGG 0.322457 1.2:+48095320 None:intergenic
TCACAAGAGGTGGCAAATTC+AGG 0.332737 1.2:-48095345 MS.gene029766:CDS
AAATAGTTCGGGACACTTGC+AGG 0.334020 1.2:-48096206 MS.gene029766:CDS
AGAACCAAAATATCCTTATC+TGG 0.337009 1.2:+48095421 None:intergenic
AGGATTGTGTGCACGCGAAT+AGG 0.355191 1.2:+48095853 None:intergenic
TATTGATACCTATGGTGGTT+GGG 0.358518 1.2:-48095641 MS.gene029766:CDS
TTTGTGGACACTTACAAAAC+TGG 0.364762 1.2:-48095451 MS.gene029766:CDS
CTCATAGTCCACCTTTGCCT+TGG 0.368509 1.2:+48096230 None:intergenic
GGAGTGGTGCTTACATTGTT+AGG 0.368655 1.2:-48095567 MS.gene029766:CDS
GGGACACTTGCAGGAGTATT+GGG 0.371873 1.2:-48096197 MS.gene029766:CDS
GTTGAATACAAGAATGATAA+TGG 0.375620 1.2:-48095886 MS.gene029766:CDS
ATCAATAATGATCTTCCTTC+CGG 0.379520 1.2:+48095657 None:intergenic
CATGTGCTTGCCACTAAAAT+TGG 0.379944 1.2:-48095982 MS.gene029766:CDS
CGGGACACTTGCAGGAGTAT+TGG 0.380004 1.2:-48096198 MS.gene029766:CDS
CATGGTGGAGGTGCCTTCTC+AGG 0.384431 1.2:-48095613 MS.gene029766:CDS
TTACAGATTCTGAGGTGAAT+AGG 0.390519 1.2:+48096394 None:intergenic
TGCTCGTCGTTGTATTGTGC+AGG 0.400285 1.2:-48095512 MS.gene029766:CDS
GTGCAGGTTTCTTATGCAAT+TGG 0.405905 1.2:-48095496 MS.gene029766:CDS
ACCAGAAGACTGCTGCTTAC+GGG 0.407668 1.2:-48095321 MS.gene029766:CDS
TCTTGTATTCAACGGTAACT+TGG 0.410805 1.2:+48095896 None:intergenic
AGAGCCACTTTCTGTGTTTG+TGG 0.412076 1.2:-48095467 MS.gene029766:CDS
TCAGGTAGGTTTGTGATTGG+TGG 0.413640 1.2:-48095703 MS.gene029766:CDS
GGTTGGGGTGCTCATGGTGG+AGG 0.416114 1.2:-48095625 MS.gene029766:CDS
GGATTGTGTGCACGCGAATA+GGG 0.416704 1.2:+48095854 None:intergenic
ACCTGGTCACAGATCTTGTC+GGG 0.417397 1.2:+48096360 None:intergenic
CCTTCAGGTAGGTTTGTGAT+TGG 0.422961 1.2:-48095706 MS.gene029766:CDS
ATAAGACATGCCCATGGGTT+AGG 0.433400 1.2:-48095933 MS.gene029766:CDS
GGTGATCAAGGTCACATGTT+TGG 0.433876 1.2:-48096045 MS.gene029766:CDS
ACCATAACTCCCTCAAGCCT+TGG 0.434421 1.2:+48095243 None:intergenic
TATGGTGGTTGGGGTGCTCA+TGG 0.437298 1.2:-48095631 MS.gene029766:CDS
CTTTCTAACTTCAGTGAGCT+TGG 0.438150 1.2:+48095957 None:intergenic
GGTTGGATCCTTTCCTGAGA+AGG 0.441186 1.2:+48095600 None:intergenic
TGCTCAAGCCCAAGGCTTGA+GGG 0.445480 1.2:-48095252 None:intergenic
ATCTTCCATCTCAACCCTTC+AGG 0.447635 1.2:-48095721 MS.gene029766:CDS
TTGTCGTCAAGGTATTTCGC+TGG 0.448172 1.2:+48095748 None:intergenic
ACAGTCTCCCATGTAAAATC+AGG 0.452392 1.2:+48095280 None:intergenic
CGTCGTGTTGAGTTGAAATG+AGG 0.453932 1.2:+48095833 None:intergenic
AGGTATTTCGCTGGGACGAC+AGG 0.463293 1.2:+48095757 None:intergenic
TCACCAGCTCCAATTTCCTC+AGG 0.463353 1.2:+48096063 None:intergenic
TGTGTGAGTGGCATTAGTTC+AGG 0.465165 1.2:+48096003 None:intergenic
CCACTCCTGTCCACCTTGGT+TGG 0.465451 1.2:+48095583 None:intergenic
TACCAGAAGACTGCTGCTTA+CGG 0.467085 1.2:-48095322 MS.gene029766:CDS
CATGGAGATGCGGGGCTCAC+CGG 0.468853 1.2:-48095676 MS.gene029766:CDS
GGACTATGAGAAAATAGTTC+GGG 0.469416 1.2:-48096217 MS.gene029766:CDS
CCATAACTCCCTCAAGCCTT+GGG 0.475898 1.2:+48095244 None:intergenic
GGTGGACCTCATGGAGATGC+GGG 0.478920 1.2:-48095685 MS.gene029766:CDS
TGGACTATGAGAAAATAGTT+CGG 0.480347 1.2:-48096218 MS.gene029766:CDS
GAAATTGGAGCTGGTGATCA+AGG 0.483468 1.2:-48096057 MS.gene029766:CDS
TGCCACCTCTTGTGAGGTCA+AGG 0.490427 1.2:+48095353 None:intergenic
AGGATCCAACCAAGGTGGAC+AGG 0.494928 1.2:-48095588 MS.gene029766:CDS
AGGTTGATAGCAATCATTCC+AGG 0.495973 1.2:+48095373 None:intergenic
TGCCATCCTTGATGCATGCT+TGG 0.499134 1.2:-48096331 MS.gene029766:CDS
AACTGGAAAGATTCCAGATA+AGG 0.500009 1.2:-48095434 MS.gene029766:CDS
GGGTTTGTGTCTGCTGATGT+TGG 0.504850 1.2:-48096177 MS.gene029766:CDS
TGCCCATGGGTTAGGCCTGA+TGG 0.510007 1.2:-48095925 MS.gene029766:CDS
CAAGGATGGCATCTGAAACC+TGG 0.510900 1.2:+48096343 None:intergenic
TTATTGATACCTATGGTGGT+TGG 0.512065 1.2:-48095642 MS.gene029766:CDS
AAGATCATTATTGATACCTA+TGG 0.514480 1.2:-48095649 MS.gene029766:CDS
GTGTCCACAAACACAGAAAG+TGG 0.522772 1.2:+48095463 None:intergenic
CTTGTATTCAACGGTAACTT+GGG 0.524167 1.2:+48095897 None:intergenic
GTAACTTGGGTCTTACCATC+AGG 0.526446 1.2:+48095910 None:intergenic
ATTGATACCTATGGTGGTTG+GGG 0.527612 1.2:-48095640 MS.gene029766:CDS
ATGCTCAAGCCCAAGGCTTG+AGG 0.527948 1.2:-48095253 None:intergenic
TGTCGTCAAGGTATTTCGCT+GGG 0.528026 1.2:+48095749 None:intergenic
ATTATCATTCTTGTATTCAA+CGG 0.531052 1.2:+48095888 None:intergenic
GATATTGCTCAAGGAGTTCA+CGG 0.536055 1.2:-48096102 MS.gene029766:CDS
CCCCGACAAGATCTGTGACC+AGG 0.538168 1.2:-48096361 MS.gene029766:CDS
TAGTTCAGGTGTTTCGTCAG+TGG 0.542460 1.2:+48096017 None:intergenic
TTTGTGATTGGTGGACCTCA+TGG 0.544583 1.2:-48095694 MS.gene029766:CDS
TACCATCAGGCCTAACCCAT+GGG 0.547526 1.2:+48095923 None:intergenic
ACCTACCTGAAGGGTTGAGA+TGG 0.549506 1.2:+48095716 None:intergenic
TGGTGGACCTCATGGAGATG+CGG 0.558868 1.2:-48095686 MS.gene029766:CDS
ACAAACACAGAAAGTGGCTC+TGG 0.562649 1.2:+48095469 None:intergenic
GGTGGTTGGGGTGCTCATGG+TGG 0.563645 1.2:-48095628 MS.gene029766:CDS
TGAAGGGTTGAGATGGAAGA+TGG 0.563688 1.2:+48095723 None:intergenic
AACCTGGTCACAGATCTTGT+CGG 0.563707 1.2:+48096359 None:intergenic
AAGCCTGAGGAAATTGGAGC+TGG 0.569064 1.2:-48096066 MS.gene029766:CDS
AGCACCACTCCTGTCCACCT+TGG 0.571010 1.2:+48095579 None:intergenic
CTCCAAGCATGCATCAAGGA+TGG 0.575330 1.2:+48096329 None:intergenic
ATCATTATTGATACCTATGG+TGG 0.575435 1.2:-48095646 MS.gene029766:CDS
ATGAGCACCCCAACCACCAT+AGG 0.575628 1.2:+48095633 None:intergenic
CAAGAATGATAATGGAGCCA+TGG 0.577331 1.2:-48095878 MS.gene029766:CDS
GGAAGATGGTCTTGTCGTCA+AGG 0.577435 1.2:+48095737 None:intergenic
TTACCATCAGGCCTAACCCA+TGG 0.578836 1.2:+48095922 None:intergenic
TGTGAAGATGCTCAAGCCCA+AGG 0.581845 1.2:-48095260 MS.gene029766:CDS
GAGATGCGGGGCTCACCGGA+AGG 0.589190 1.2:-48095672 MS.gene029766:CDS
ACCTTCGTTTACAGATTCTG+AGG 0.589403 1.2:+48096386 None:intergenic
TGAAATCACAACCAAGGCAA+AGG 0.590046 1.2:-48096241 MS.gene029766:CDS
CCAATCACAAACCTACCTGA+AGG 0.592190 1.2:+48095706 None:intergenic
AACCTTGACCTCACAAGAGG+TGG 0.593643 1.2:-48095355 MS.gene029766:CDS
GGAGCAAGATAAAGAGAGCA+AGG 0.594380 1.2:-48096310 MS.gene029766:CDS
AATCACAACCAAGGCAAAGG+TGG 0.598400 1.2:-48096238 MS.gene029766:CDS
TGAATTTGCCACCTCTTGTG+AGG 0.598537 1.2:+48095347 None:intergenic
CAGAGCCCTGATATTGCTCA+AGG 0.602611 1.2:-48096111 MS.gene029766:CDS
CTTGCTCCAAGCATGCATCA+AGG 0.602878 1.2:+48096325 None:intergenic
GAACTCCTTGAGCAATATCA+GGG 0.613163 1.2:+48096106 None:intergenic
GAAAGAATAAGACATGCCCA+TGG 0.616428 1.2:-48095939 MS.gene029766:CDS
TGGAGGTGCCTTCTCAGGAA+AGG 0.621106 1.2:-48095608 MS.gene029766:CDS
CAATCACAAACCTACCTGAA+GGG 0.630070 1.2:+48095707 None:intergenic
ATCAACCTTGACCTCACAAG+AGG 0.632107 1.2:-48095358 MS.gene029766:CDS
AGATTCTGAGGTGAATAGGA+AGG 0.635764 1.2:+48096398 None:intergenic
TCCATCTCAACCCTTCAGGT+AGG 0.636963 1.2:-48095717 MS.gene029766:CDS
AAAGAATAAGACATGCCCAT+GGG 0.640830 1.2:-48095938 MS.gene029766:CDS
CCAACCAAGGTGGACAGGAG+TGG 0.650759 1.2:-48095583 MS.gene029766:CDS
ACCTCAGAATCTGTAAACGA+AGG 0.651225 1.2:-48096387 MS.gene029766:CDS
GTGGACCTCATGGAGATGCG+GGG 0.667986 1.2:-48095684 MS.gene029766:CDS
GTGGCAAGCACATGTGTGAG+TGG 0.669118 1.2:+48095991 None:intergenic
CTCAGGAAAGGATCCAACCA+AGG 0.675495 1.2:-48095596 MS.gene029766:CDS
CTTTGGTGAAATCACAACCA+AGG 0.678587 1.2:-48096247 MS.gene029766:CDS
TCACTTGAGCAAGAAGCCTG+AGG 0.682617 1.2:-48096079 MS.gene029766:CDS
GTGCACGCGAATAGGGACCA+TGG 0.688328 1.2:+48095861 None:intergenic
GTGAGCCCCGCATCTCCATG+AGG 0.689929 1.2:+48095679 None:intergenic
AGGAAAGGATCCAACCAAGG+TGG 0.705983 1.2:-48095593 MS.gene029766:CDS
CCTGGTCACAGATCTTGTCG+GGG 0.713673 1.2:+48096361 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATCATTCTTGTATTCAA+CGG + chr1.2:48095775-48095794 None:intergenic 20.0%
! AAGATCATTATTGATACCTA+TGG - chr1.2:48096011-48096030 MS.gene029766:CDS 25.0%
! GTTGAATACAAGAATGATAA+TGG - chr1.2:48095774-48095793 MS.gene029766:CDS 25.0%
! TACAAAAACTAACATGGTTA+TGG - chr1.2:48095389-48095408 MS.gene029766:CDS 25.0%
AGAACCAAAATATCCTTATC+TGG + chr1.2:48096242-48096261 None:intergenic 30.0%
ATCAATAATGATCTTCCTTC+CGG + chr1.2:48096006-48096025 None:intergenic 30.0%
ATCATTATTGATACCTATGG+TGG - chr1.2:48096014-48096033 MS.gene029766:CDS 30.0%
TGGACTATGAGAAAATAGTT+CGG - chr1.2:48095442-48095461 MS.gene029766:CDS 30.0%
! GATTCCAGATAAGGATATTT+TGG - chr1.2:48096235-48096254 MS.gene029766:CDS 30.0%
!!! AACCATGTTAGTTTTTGTAC+AGG + chr1.2:48095388-48095407 None:intergenic 30.0%
!!! GGATATTTTGGTTCTGATTA+AGG - chr1.2:48096247-48096266 MS.gene029766:CDS 30.0%
!!! TTAAGGAGAATTTTGACTTC+AGG - chr1.2:48096264-48096283 MS.gene029766:CDS 30.0%
AAAGAATAAGACATGCCCAT+GGG - chr1.2:48095722-48095741 MS.gene029766:CDS 35.0%
AACTGGAAAGATTCCAGATA+AGG - chr1.2:48096226-48096245 MS.gene029766:CDS 35.0%
ACTAACATGGTTATGGTCTT+TGG - chr1.2:48095396-48095415 MS.gene029766:CDS 35.0%
CTTGTATTCAACGGTAACTT+GGG + chr1.2:48095766-48095785 None:intergenic 35.0%
GACCTGTACAAAAACTAACA+TGG - chr1.2:48095383-48095402 MS.gene029766:CDS 35.0%
GGACTATGAGAAAATAGTTC+GGG - chr1.2:48095443-48095462 MS.gene029766:CDS 35.0%
TATTGATACCTATGGTGGTT+GGG - chr1.2:48096019-48096038 MS.gene029766:CDS 35.0%
TCTTGTATTCAACGGTAACT+TGG + chr1.2:48095767-48095786 None:intergenic 35.0%
TTATTGATACCTATGGTGGT+TGG - chr1.2:48096018-48096037 MS.gene029766:CDS 35.0%
TTTGTGGACACTTACAAAAC+TGG - chr1.2:48096209-48096228 MS.gene029766:CDS 35.0%
! TGACGATCCTGATTTTACAT+GGG - chr1.2:48096373-48096392 MS.gene029766:CDS 35.0%
!! TTACAGATTCTGAGGTGAAT+AGG + chr1.2:48095269-48095288 None:intergenic 35.0%
ACAGTCTCCCATGTAAAATC+AGG + chr1.2:48096383-48096402 None:intergenic 40.0%
ACCTCAGAATCTGTAAACGA+AGG - chr1.2:48095273-48095292 MS.gene029766:CDS 40.0%
ACCTTCGTTTACAGATTCTG+AGG + chr1.2:48095277-48095296 None:intergenic 40.0%
ATTGATACCTATGGTGGTTG+GGG - chr1.2:48096020-48096039 MS.gene029766:CDS 40.0%
CAATCACAAACCTACCTGAA+GGG + chr1.2:48095956-48095975 None:intergenic 40.0%
CATGTGCTTGCCACTAAAAT+TGG - chr1.2:48095678-48095697 MS.gene029766:CDS 40.0%
CTTTCTAACTTCAGTGAGCT+TGG + chr1.2:48095706-48095725 None:intergenic 40.0%
CTTTGGTGAAATCACAACCA+AGG - chr1.2:48095413-48095432 MS.gene029766:CDS 40.0%
GAAAGAATAAGACATGCCCA+TGG - chr1.2:48095721-48095740 MS.gene029766:CDS 40.0%
GAACTCCTTGAGCAATATCA+GGG + chr1.2:48095557-48095576 None:intergenic 40.0%
GATATTGCTCAAGGAGTTCA+CGG - chr1.2:48095558-48095577 MS.gene029766:CDS 40.0%
GTGCAGGTTTCTTATGCAAT+TGG - chr1.2:48096164-48096183 MS.gene029766:CDS 40.0%
TGAAATCACAACCAAGGCAA+AGG - chr1.2:48095419-48095438 MS.gene029766:CDS 40.0%
TGAACTCCTTGAGCAATATC+AGG + chr1.2:48095558-48095577 None:intergenic 40.0%
! GTGACGATCCTGATTTTACA+TGG - chr1.2:48096372-48096391 MS.gene029766:CDS 40.0%
!! AGATTCTGAGGTGAATAGGA+AGG + chr1.2:48095265-48095284 None:intergenic 40.0%
!! AGGTTGATAGCAATCATTCC+AGG + chr1.2:48096290-48096309 None:intergenic 40.0%
!! CAAAAAGTGTTGTCGCTTCA+GGG - chr1.2:48096123-48096142 MS.gene029766:CDS 40.0%
!! CAAGAATGATAATGGAGCCA+TGG - chr1.2:48095782-48095801 MS.gene029766:CDS 40.0%
AAATAGTTCGGGACACTTGC+AGG - chr1.2:48095454-48095473 MS.gene029766:CDS 45.0%
AACCTGGTCACAGATCTTGT+CGG + chr1.2:48095304-48095323 None:intergenic 45.0%
AATCACAACCAAGGCAAAGG+TGG - chr1.2:48095422-48095441 MS.gene029766:CDS 45.0%
ACAAACACAGAAAGTGGCTC+TGG + chr1.2:48096194-48096213 None:intergenic 45.0%
AGCAAGAAGCCTGAGGAAAT+TGG - chr1.2:48095588-48095607 MS.gene029766:CDS 45.0%
ATAAGACATGCCCATGGGTT+AGG - chr1.2:48095727-48095746 MS.gene029766:CDS 45.0%
ATCAACCTTGACCTCACAAG+AGG - chr1.2:48096302-48096321 MS.gene029766:CDS 45.0%
ATCTTCCATCTCAACCCTTC+AGG - chr1.2:48095939-48095958 MS.gene029766:CDS 45.0%
CCAATCACAAACCTACCTGA+AGG + chr1.2:48095957-48095976 None:intergenic 45.0%
CCTTCAGGTAGGTTTGTGAT+TGG - chr1.2:48095954-48095973 MS.gene029766:CDS 45.0%
GAAATTGGAGCTGGTGATCA+AGG - chr1.2:48095603-48095622 MS.gene029766:CDS 45.0%
GGAGCAAGATAAAGAGAGCA+AGG - chr1.2:48095350-48095369 MS.gene029766:CDS 45.0%
GGAGTGGTGCTTACATTGTT+AGG - chr1.2:48096093-48096112 MS.gene029766:CDS 45.0%
GGTGATCAAGGTCACATGTT+TGG - chr1.2:48095615-48095634 MS.gene029766:CDS 45.0%
GTAACTTGGGTCTTACCATC+AGG + chr1.2:48095753-48095772 None:intergenic 45.0%
GTGTCCACAAACACAGAAAG+TGG + chr1.2:48096200-48096219 None:intergenic 45.0%
TAGTTCAGGTGTTTCGTCAG+TGG + chr1.2:48095646-48095665 None:intergenic 45.0%
TCACAAGAGGTGGCAAATTC+AGG - chr1.2:48096315-48096334 MS.gene029766:CDS 45.0%
TCAGGTAGGTTTGTGATTGG+TGG - chr1.2:48095957-48095976 MS.gene029766:CDS 45.0%
TGAAGGGTTGAGATGGAAGA+TGG + chr1.2:48095940-48095959 None:intergenic 45.0%
TGAATTTGCCACCTCTTGTG+AGG + chr1.2:48096316-48096335 None:intergenic 45.0%
TGTGTGAGTGGCATTAGTTC+AGG + chr1.2:48095660-48095679 None:intergenic 45.0%
! AGAGCCACTTTCTGTGTTTG+TGG - chr1.2:48096193-48096212 MS.gene029766:CDS 45.0%
! AGTTTTTGTACAGGTCTCGC+AGG + chr1.2:48095379-48095398 None:intergenic 45.0%
! GAGCTTGGCACCAATTTTAG+TGG + chr1.2:48095691-48095710 None:intergenic 45.0%
! TACCAGAAGACTGCTGCTTA+CGG - chr1.2:48096338-48096357 MS.gene029766:CDS 45.0%
! TGTCGTCAAGGTATTTCGCT+GGG + chr1.2:48095914-48095933 None:intergenic 45.0%
! TTGTCGTCAAGGTATTTCGC+TGG + chr1.2:48095915-48095934 None:intergenic 45.0%
! TTTGTGATTGGTGGACCTCA+TGG - chr1.2:48095966-48095985 MS.gene029766:CDS 45.0%
!! CGTCGTGTTGAGTTGAAATG+AGG + chr1.2:48095830-48095849 None:intergenic 45.0%
!! GCAAAAAGTGTTGTCGCTTC+AGG - chr1.2:48096122-48096141 MS.gene029766:CDS 45.0%
!!! GAGAATTTTGACTTCAGGCC+TGG - chr1.2:48096269-48096288 MS.gene029766:CDS 45.0%
AACCTTGACCTCACAAGAGG+TGG - chr1.2:48096305-48096324 MS.gene029766:CDS 50.0%
AAGCCTGAGGAAATTGGAGC+TGG - chr1.2:48095594-48095613 MS.gene029766:CDS 50.0%
ACCTACCTGAAGGGTTGAGA+TGG + chr1.2:48095947-48095966 None:intergenic 50.0%
ACCTGGTCACAGATCTTGTC+GGG + chr1.2:48095303-48095322 None:intergenic 50.0%
AGGAAAGGATCCAACCAAGG+TGG - chr1.2:48096067-48096086 MS.gene029766:CDS 50.0%
AGGATTGTGTGCACGCGAAT+AGG + chr1.2:48095810-48095829 None:intergenic 50.0%
CAGAGCCCTGATATTGCTCA+AGG - chr1.2:48095549-48095568 MS.gene029766:CDS 50.0%
CTCAGGAAAGGATCCAACCA+AGG - chr1.2:48096064-48096083 MS.gene029766:CDS 50.0%
CTCATAGTCCACCTTTGCCT+TGG + chr1.2:48095433-48095452 None:intergenic 50.0%
CTCCAAGCATGCATCAAGGA+TGG + chr1.2:48095334-48095353 None:intergenic 50.0%
CTTGCTCCAAGCATGCATCA+AGG + chr1.2:48095338-48095357 None:intergenic 50.0%
GGATTGTGTGCACGCGAATA+GGG + chr1.2:48095809-48095828 None:intergenic 50.0%
GGGTTTGTGTCTGCTGATGT+TGG - chr1.2:48095483-48095502 MS.gene029766:CDS 50.0%
GGTTGGATCCTTTCCTGAGA+AGG + chr1.2:48096063-48096082 None:intergenic 50.0%
TACCATCAGGCCTAACCCAT+GGG + chr1.2:48095740-48095759 None:intergenic 50.0%
TCACCAGCTCCAATTTCCTC+AGG + chr1.2:48095600-48095619 None:intergenic 50.0%
TCACTTGAGCAAGAAGCCTG+AGG - chr1.2:48095581-48095600 MS.gene029766:CDS 50.0%
TCCATCTCAACCCTTCAGGT+AGG - chr1.2:48095943-48095962 MS.gene029766:CDS 50.0%
TGCCATCCTTGATGCATGCT+TGG - chr1.2:48095329-48095348 MS.gene029766:CDS 50.0%
TGCTCGTCGTTGTATTGTGC+AGG - chr1.2:48096148-48096167 MS.gene029766:CDS 50.0%
TGTGAAGATGCTCAAGCCCA+AGG - chr1.2:48096400-48096419 MS.gene029766:CDS 50.0%
TTACCATCAGGCCTAACCCA+TGG + chr1.2:48095741-48095760 None:intergenic 50.0%
! ACCAGAAGACTGCTGCTTAC+GGG - chr1.2:48096339-48096358 MS.gene029766:CDS 50.0%
! CAAGGATGGCATCTGAAACC+TGG + chr1.2:48095320-48095339 None:intergenic 50.0%
!! ACTGCTGCTTACGGGCATTT+TGG - chr1.2:48096347-48096366 MS.gene029766:CDS 50.0%
!! GGAAGATGGTCTTGTCGTCA+AGG + chr1.2:48095926-48095945 None:intergenic 50.0%
!! GGGACACTTGCAGGAGTATT+GGG - chr1.2:48095463-48095482 MS.gene029766:CDS 50.0%
AGGATCCAACCAAGGTGGAC+AGG - chr1.2:48096072-48096091 MS.gene029766:CDS 55.0%
AGGTATTTCGCTGGGACGAC+AGG + chr1.2:48095906-48095925 None:intergenic 55.0%
ATGAGCACCCCAACCACCAT+AGG + chr1.2:48096030-48096049 None:intergenic 55.0%
CCTGGTCACAGATCTTGTCG+GGG + chr1.2:48095302-48095321 None:intergenic 55.0%
GTGGCAAGCACATGTGTGAG+TGG + chr1.2:48095672-48095691 None:intergenic 55.0%
TGCCACCTCTTGTGAGGTCA+AGG + chr1.2:48096310-48096329 None:intergenic 55.0%
! CGGGACACTTGCAGGAGTAT+TGG - chr1.2:48095462-48095481 MS.gene029766:CDS 55.0%
! TATGGTGGTTGGGGTGCTCA+TGG - chr1.2:48096029-48096048 MS.gene029766:CDS 55.0%
! TGGTGGACCTCATGGAGATG+CGG - chr1.2:48095974-48095993 MS.gene029766:CDS 55.0%
!! TGGAGGTGCCTTCTCAGGAA+AGG - chr1.2:48096052-48096071 MS.gene029766:CDS 55.0%
AGCACCACTCCTGTCCACCT+TGG + chr1.2:48096084-48096103 None:intergenic 60.0%
CCAACCAAGGTGGACAGGAG+TGG - chr1.2:48096077-48096096 MS.gene029766:CDS 60.0%
CCACTCCTGTCCACCTTGGT+TGG + chr1.2:48096080-48096099 None:intergenic 60.0%
CCCCGACAAGATCTGTGACC+AGG - chr1.2:48095299-48095318 MS.gene029766:CDS 60.0%
GCCCGTAAGCAGCAGTCTTC+TGG + chr1.2:48096343-48096362 None:intergenic 60.0%
GGTGGACCTCATGGAGATGC+GGG - chr1.2:48095975-48095994 MS.gene029766:CDS 60.0%
GTGCACGCGAATAGGGACCA+TGG + chr1.2:48095802-48095821 None:intergenic 60.0%
GTGGACCTCATGGAGATGCG+GGG - chr1.2:48095976-48095995 MS.gene029766:CDS 60.0%
!! CATGGTGGAGGTGCCTTCTC+AGG - chr1.2:48096047-48096066 MS.gene029766:CDS 60.0%
!! TGCCCATGGGTTAGGCCTGA+TGG - chr1.2:48095735-48095754 MS.gene029766:CDS 60.0%
CATGGAGATGCGGGGCTCAC+CGG - chr1.2:48095984-48096003 MS.gene029766:CDS 65.0%
GTGAGCCCCGCATCTCCATG+AGG + chr1.2:48095984-48096003 None:intergenic 65.0%
! GGTGGTTGGGGTGCTCATGG+TGG - chr1.2:48096032-48096051 MS.gene029766:CDS 65.0%
! GGTTGGGGTGCTCATGGTGG+AGG - chr1.2:48096035-48096054 MS.gene029766:CDS 65.0%
GAGATGCGGGGCTCACCGGA+AGG - chr1.2:48095988-48096007 MS.gene029766:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 48095255 48096427 48095255 ID=MS.gene029766
chr1.2 mRNA 48095255 48096427 48095255 ID=MS.gene029766.t1;Parent=MS.gene029766
chr1.2 exon 48095255 48096427 48095255 ID=MS.gene029766.t1.exon1;Parent=MS.gene029766.t1
chr1.2 CDS 48095255 48096427 48095255 ID=cds.MS.gene029766.t1;Parent=MS.gene029766.t1
Gene Sequence

>MS.gene029766

ATGGATACCTTCCTATTCACCTCAGAATCTGTAAACGAAGGTCACCCCGACAAGATCTGTGACCAGGTTTCAGATGCCATCCTTGATGCATGCTTGGAGCAAGATAAAGAGAGCAAGGTTGCCTGCGAGACCTGTACAAAAACTAACATGGTTATGGTCTTTGGTGAAATCACAACCAAGGCAAAGGTGGACTATGAGAAAATAGTTCGGGACACTTGCAGGAGTATTGGGTTTGTGTCTGCTGATGTTGGTCTTGATGCTGACAAATGCAATGTTCTTGTCAACATTGAGCAACAGAGCCCTGATATTGCTCAAGGAGTTCACGGTCACTTGAGCAAGAAGCCTGAGGAAATTGGAGCTGGTGATCAAGGTCACATGTTTGGCTATGCCACTGACGAAACACCTGAACTAATGCCACTCACACATGTGCTTGCCACTAAAATTGGTGCCAAGCTCACTGAAGTTAGAAAGAATAAGACATGCCCATGGGTTAGGCCTGATGGTAAGACCCAAGTTACCGTTGAATACAAGAATGATAATGGAGCCATGGTCCCTATTCGCGTGCACACAATCCTCATTTCAACTCAACACGACGAAACTGTCACAAATGAAAAGATTGCTCAAGATTTGAAAGAGCATGTTATTAAACCTGTCGTCCCAGCGAAATACCTTGACGACAAGACCATCTTCCATCTCAACCCTTCAGGTAGGTTTGTGATTGGTGGACCTCATGGAGATGCGGGGCTCACCGGAAGGAAGATCATTATTGATACCTATGGTGGTTGGGGTGCTCATGGTGGAGGTGCCTTCTCAGGAAAGGATCCAACCAAGGTGGACAGGAGTGGTGCTTACATTGTTAGGCAAGCTGCAAAAAGTGTTGTCGCTTCAGGGCTTGCTCGTCGTTGTATTGTGCAGGTTTCTTATGCAATTGGAGTGCCAGAGCCACTTTCTGTGTTTGTGGACACTTACAAAACTGGAAAGATTCCAGATAAGGATATTTTGGTTCTGATTAAGGAGAATTTTGACTTCAGGCCTGGAATGATTGCTATCAACCTTGACCTCACAAGAGGTGGCAAATTCAGGTACCAGAAGACTGCTGCTTACGGGCATTTTGGACGTGACGATCCTGATTTTACATGGGAGACTGTGAAGATGCTCAAGCCCAAGGCTTGA
Protein sequence

>MS.gene029766.t1

MDTFLFTSESVNEGHPDKICDQVSDAILDACLEQDKESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSADVGLDADKCNVLVNIEQQSPDIAQGVHGHLSKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKIGAKLTEVRKNKTCPWVRPDGKTQVTVEYKNDNGAMVPIRVHTILISTQHDETVTNEKIAQDLKEHVIKPVVPAKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILVLIKENFDFRPGMIAINLDLTRGGKFRYQKTAAYGHFGRDDPDFTWETVKMLKPKA