Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029809.t1 | XP_003590457.1 | 98 | 299 | 6 | 0 | 1 | 299 | 1 | 299 | 4.90E-173 | 617.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029809.t1 | Q96G74 | 27.6 | 127 | 89 | 1 | 171 | 294 | 188 | 314 | 2.0e-10 | 68.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029809.t1 | G7IA91 | 98.0 | 299 | 6 | 0 | 1 | 299 | 1 | 299 | 3.5e-173 | 617.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene99991 | MS.gene029809 | PPI |
| MS.gene34070 | MS.gene029809 | PPI |
| MS.gene005908 | MS.gene029809 | PPI |
| MS.gene34071 | MS.gene029809 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029809.t1 | MTR_1g063900 | 95.484 | 310 | 13 | 1 | 1 | 310 | 1 | 309 | 0.0 | 616 |
| MS.gene029809.t1 | MTR_1g063900 | 97.786 | 271 | 6 | 0 | 1 | 271 | 1 | 271 | 0.0 | 555 |
| MS.gene029809.t1 | MTR_1g094650 | 49.051 | 316 | 130 | 6 | 8 | 296 | 10 | 321 | 4.27e-88 | 269 |
| MS.gene029809.t1 | MTR_6g033065 | 55.921 | 152 | 67 | 0 | 147 | 298 | 44 | 195 | 1.02e-65 | 207 |
| MS.gene029809.t1 | MTR_3g081150 | 57.432 | 148 | 63 | 0 | 150 | 297 | 47 | 194 | 1.44e-62 | 199 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029809.t1 | AT5G03330 | 55.474 | 274 | 107 | 5 | 45 | 303 | 50 | 323 | 1.29e-91 | 278 |
| MS.gene029809.t1 | AT5G03330 | 55.474 | 274 | 107 | 5 | 45 | 303 | 50 | 323 | 1.29e-91 | 278 |
| MS.gene029809.t1 | AT5G03330 | 54.448 | 281 | 112 | 6 | 45 | 310 | 50 | 329 | 1.77e-90 | 275 |
| MS.gene029809.t1 | AT5G03330 | 54.448 | 281 | 112 | 6 | 45 | 310 | 50 | 329 | 1.77e-90 | 275 |
| MS.gene029809.t1 | AT5G04250 | 43.408 | 311 | 157 | 3 | 1 | 296 | 1 | 307 | 5.55e-80 | 248 |
| MS.gene029809.t1 | AT5G04250 | 43.408 | 311 | 157 | 3 | 1 | 296 | 1 | 307 | 5.55e-80 | 248 |
| MS.gene029809.t1 | AT3G02070 | 58.824 | 153 | 63 | 0 | 147 | 299 | 33 | 185 | 2.31e-66 | 208 |
| MS.gene029809.t1 | AT3G02070 | 58.824 | 153 | 63 | 0 | 147 | 299 | 33 | 185 | 2.31e-66 | 208 |
| MS.gene029809.t1 | AT3G22260 | 54.054 | 148 | 68 | 0 | 150 | 297 | 58 | 205 | 7.49e-53 | 174 |
| MS.gene029809.t1 | AT3G22260 | 54.054 | 148 | 68 | 0 | 150 | 297 | 58 | 205 | 1.09e-52 | 174 |
| MS.gene029809.t1 | AT3G22260 | 54.054 | 148 | 68 | 0 | 150 | 297 | 58 | 205 | 1.09e-52 | 174 |
| MS.gene029809.t1 | AT3G22260 | 54.054 | 148 | 68 | 0 | 150 | 297 | 58 | 205 | 1.09e-52 | 174 |
| MS.gene029809.t1 | AT3G22260 | 54.054 | 148 | 68 | 0 | 150 | 297 | 58 | 205 | 1.09e-52 | 174 |
| MS.gene029809.t1 | AT3G22260 | 54.054 | 148 | 68 | 0 | 150 | 297 | 58 | 205 | 1.09e-52 | 174 |
| MS.gene029809.t1 | AT2G39320 | 40.404 | 99 | 40 | 1 | 198 | 296 | 2 | 81 | 2.11e-16 | 76.6 |
Find 61 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCCATTGGATGATGAAAT+TGG | 0.162385 | 1.2:-48800210 | MS.gene029809:CDS |
| CATGGAATATAATGAATATT+TGG | 0.203978 | 1.2:-48795511 | MS.gene029809:CDS |
| AAGAAAATCTTACCTCCTTT+TGG | 0.253179 | 1.2:+48794919 | None:intergenic |
| TGCTGAATCCCAGAGCATTT+TGG | 0.340007 | 1.2:-48794005 | MS.gene029809:CDS |
| GTCAGATCATGAAAGGCTTC+TGG | 0.347146 | 1.2:-48796160 | MS.gene029809:CDS |
| AAGTCAGTTTCTATACATAA+AGG | 0.349134 | 1.2:-48793968 | MS.gene029809:CDS |
| CGTTATAGTCCTGGATACTA+TGG | 0.356047 | 1.2:-48800678 | MS.gene029809:CDS |
| CATATGAAGGCTCAGAAGTA+TGG | 0.356593 | 1.2:+48800472 | None:intergenic |
| ATAAAGGGTTCAAGTGTATC+AGG | 0.366966 | 1.2:-48793952 | MS.gene029809:intron |
| ACATATCCTTCATATATATC+AGG | 0.376898 | 1.2:+48795537 | None:intergenic |
| CTTCTGAGCCTTCATATGAT+TGG | 0.400034 | 1.2:-48800467 | MS.gene029809:CDS |
| AGAAAACATCCAAAATGCTC+TGG | 0.408238 | 1.2:+48793996 | None:intergenic |
| ACTTCAAGCCGCGGCTGATT+CGG | 0.418659 | 1.2:-48795351 | MS.gene029809:intron |
| CAAATATTCATTATATTCCA+TGG | 0.419565 | 1.2:+48795512 | None:intergenic |
| CTCACAAACTTGTGGTGATC+AGG | 0.420249 | 1.2:+48795692 | None:intergenic |
| ATTACAGTTATATGACTTTG+TGG | 0.422681 | 1.2:-48795920 | MS.gene029809:CDS |
| TGATCTCGTCATTCTCTACT+TGG | 0.423582 | 1.2:+48800577 | None:intergenic |
| AGTCAGTTTCTATACATAAA+GGG | 0.424451 | 1.2:-48793967 | MS.gene029809:CDS |
| GAAGCTAAACTTACAGGAAT+GGG | 0.430027 | 1.2:+48800165 | None:intergenic |
| TACTTTCAGAAGTATCATAA+TGG | 0.431762 | 1.2:+48800601 | None:intergenic |
| ATCCATTGGATGATGAAATT+GGG | 0.458225 | 1.2:-48800209 | MS.gene029809:CDS |
| ACAAGGTGATGGTAATTGTC+AGG | 0.460550 | 1.2:-48795887 | MS.gene029809:intron |
| GACATAACTCAACATGATAC+TGG | 0.462268 | 1.2:-48800654 | MS.gene029809:CDS |
| GTCGATCCTCGTTATAGTCC+TGG | 0.463062 | 1.2:-48800687 | MS.gene029809:CDS |
| GCTTCTTGACAATTATCCAT+TGG | 0.473123 | 1.2:-48800223 | MS.gene029809:CDS |
| CCGATGATGAGCTATTGTTC+AGG | 0.473899 | 1.2:-48800435 | MS.gene029809:CDS |
| TGAAACTAGGAGTGGTGAAT+GGG | 0.478508 | 1.2:-48795387 | MS.gene029809:intron |
| AGAAGCTAAACTTACAGGAA+TGG | 0.503330 | 1.2:+48800164 | None:intergenic |
| GACGTTGCTTCATCAATAGA+AGG | 0.512372 | 1.2:+48796180 | None:intergenic |
| ATGAAACTAGGAGTGGTGAA+TGG | 0.525646 | 1.2:-48795388 | MS.gene029809:intron |
| TGAAGTAGAGGGAGTCTCAT+CGG | 0.525785 | 1.2:-48800247 | MS.gene029809:CDS |
| GAAAACATCCAAAATGCTCT+GGG | 0.526341 | 1.2:+48793997 | None:intergenic |
| GCATTCAGATGTTGTTCAGT+GGG | 0.529867 | 1.2:-48800727 | MS.gene029809:CDS |
| AATATTTGGATAAGATGTCT+AGG | 0.530005 | 1.2:-48795497 | MS.gene029809:intron |
| TCTCATCCTGATATATATGA+AGG | 0.537747 | 1.2:-48795543 | MS.gene029809:CDS |
| TTGTAGTCCTAGTGAAGTAG+AGG | 0.540675 | 1.2:-48800259 | MS.gene029809:CDS |
| TGAGCGTTCAAGTTATTCAC+AGG | 0.542997 | 1.2:-48800511 | MS.gene029809:CDS |
| GTTATACAACTGATCAGATA+AGG | 0.550657 | 1.2:+48795718 | None:intergenic |
| AAATATTCATTATATTCCAT+GGG | 0.552117 | 1.2:+48795513 | None:intergenic |
| GTGTTATGCCAATCATATGA+AGG | 0.562233 | 1.2:+48800459 | None:intergenic |
| GTTATGTCACCATAGTATCC+AGG | 0.570278 | 1.2:+48800669 | None:intergenic |
| GAGCATAAAGTACAAGGTGA+TGG | 0.591615 | 1.2:-48795898 | MS.gene029809:CDS |
| AAGCAACGTCAGATCATGAA+AGG | 0.595247 | 1.2:-48796167 | MS.gene029809:CDS |
| TCTTTCTCCAGTATGGTGTG+AGG | 0.597080 | 1.2:-48795005 | MS.gene029809:intron |
| GGTCATGATTATGCACATGA+AGG | 0.605365 | 1.2:-48800312 | MS.gene029809:CDS |
| AGCATTCAGATGTTGTTCAG+TGG | 0.611379 | 1.2:-48800728 | MS.gene029809:CDS |
| CCTGAACAATAGCTCATCAT+CGG | 0.613174 | 1.2:+48800435 | None:intergenic |
| CTCCCAATTTCATCATCCAA+TGG | 0.616863 | 1.2:+48800207 | None:intergenic |
| GAGACGAAAAGTTGTGAACC+AGG | 0.617334 | 1.2:-48795672 | MS.gene029809:intron |
| GAGACTCCCTCTACTTCACT+AGG | 0.617455 | 1.2:+48800252 | None:intergenic |
| GAAACTAGGAGTGGTGAATG+GGG | 0.624351 | 1.2:-48795386 | MS.gene029809:intron |
| AACTAGTACCGAATCAGCCG+CGG | 0.627768 | 1.2:+48795343 | None:intergenic |
| TTTGTGGAGCATAAAGTACA+AGG | 0.635922 | 1.2:-48795904 | MS.gene029809:CDS |
| ATATGAAGGATATGTTCCCA+TGG | 0.636647 | 1.2:-48795529 | MS.gene029809:CDS |
| TGTAGTCCTAGTGAAGTAGA+GGG | 0.639828 | 1.2:-48800258 | MS.gene029809:CDS |
| ATCATGAAAGGCTTCTGGAG+AGG | 0.644141 | 1.2:-48796155 | MS.gene029809:intron |
| ATGATGAGCTATTGTTCAGG+AGG | 0.650253 | 1.2:-48800432 | MS.gene029809:intron |
| CATTGGATGATGAAATTGGG+AGG | 0.656789 | 1.2:-48800206 | MS.gene029809:CDS |
| TCATGTCACACTTCAAGCCG+CGG | 0.663944 | 1.2:-48795360 | MS.gene029809:CDS |
| CATTCAGATGTTGTTCAGTG+GGG | 0.679592 | 1.2:-48800726 | MS.gene029809:CDS |
| TAGTATCCAGGACTATAACG+AGG | 0.765147 | 1.2:+48800681 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 48792724 | 48800763 | 48792724 | ID=MS.gene029809 |
| chr1.2 | mRNA | 48792724 | 48800763 | 48792724 | ID=MS.gene029809.t1;Parent=MS.gene029809 |
| chr1.2 | exon | 48800433 | 48800763 | 48800433 | ID=MS.gene029809.t1.exon1;Parent=MS.gene029809.t1 |
| chr1.2 | CDS | 48800433 | 48800763 | 48800433 | ID=cds.MS.gene029809.t1;Parent=MS.gene029809.t1 |
| chr1.2 | exon | 48800179 | 48800333 | 48800179 | ID=MS.gene029809.t1.exon2;Parent=MS.gene029809.t1 |
| chr1.2 | CDS | 48800179 | 48800333 | 48800179 | ID=cds.MS.gene029809.t1;Parent=MS.gene029809.t1 |
| chr1.2 | exon | 48796156 | 48796229 | 48796156 | ID=MS.gene029809.t1.exon3;Parent=MS.gene029809.t1 |
| chr1.2 | CDS | 48796156 | 48796229 | 48796156 | ID=cds.MS.gene029809.t1;Parent=MS.gene029809.t1 |
| chr1.2 | exon | 48795888 | 48795942 | 48795888 | ID=MS.gene029809.t1.exon4;Parent=MS.gene029809.t1 |
| chr1.2 | CDS | 48795888 | 48795942 | 48795888 | ID=cds.MS.gene029809.t1;Parent=MS.gene029809.t1 |
| chr1.2 | exon | 48795673 | 48795747 | 48795673 | ID=MS.gene029809.t1.exon5;Parent=MS.gene029809.t1 |
| chr1.2 | CDS | 48795673 | 48795747 | 48795673 | ID=cds.MS.gene029809.t1;Parent=MS.gene029809.t1 |
| chr1.2 | exon | 48795498 | 48795571 | 48795498 | ID=MS.gene029809.t1.exon6;Parent=MS.gene029809.t1 |
| chr1.2 | CDS | 48795498 | 48795571 | 48795498 | ID=cds.MS.gene029809.t1;Parent=MS.gene029809.t1 |
| chr1.2 | exon | 48795352 | 48795400 | 48795352 | ID=MS.gene029809.t1.exon7;Parent=MS.gene029809.t1 |
| chr1.2 | CDS | 48795352 | 48795400 | 48795352 | ID=cds.MS.gene029809.t1;Parent=MS.gene029809.t1 |
| chr1.2 | exon | 48794903 | 48795016 | 48794903 | ID=MS.gene029809.t1.exon8;Parent=MS.gene029809.t1 |
| chr1.2 | CDS | 48794903 | 48795016 | 48794903 | ID=cds.MS.gene029809.t1;Parent=MS.gene029809.t1 |
| chr1.2 | exon | 48793953 | 48794028 | 48793953 | ID=MS.gene029809.t1.exon9;Parent=MS.gene029809.t1 |
| chr1.2 | CDS | 48793953 | 48794028 | 48793953 | ID=cds.MS.gene029809.t1;Parent=MS.gene029809.t1 |
| chr1.2 | exon | 48792724 | 48792731 | 48792724 | ID=MS.gene029809.t1.exon10;Parent=MS.gene029809.t1 |
| chr1.2 | CDS | 48792724 | 48792731 | 48792724 | ID=cds.MS.gene029809.t1;Parent=MS.gene029809.t1 |
| Gene Sequence |
| Protein sequence |