Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029882.t1 | XP_013468260.1 | 96.7 | 361 | 11 | 1 | 1 | 360 | 1 | 361 | 3.40E-148 | 534.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029882.t1 | Q0JHZ2 | 80.1 | 361 | 68 | 2 | 1 | 357 | 1 | 361 | 6.6e-116 | 418.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029882.t1 | A0A072VKH3 | 96.7 | 361 | 11 | 1 | 1 | 360 | 1 | 361 | 2.5e-148 | 534.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene029882.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029882 | MS.gene049359 | PPI |
| MS.gene31037 | MS.gene029882 | PPI |
| MS.gene029882 | MS.gene06479 | PPI |
| MS.gene029882 | MS.gene013382 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029882.t1 | MTR_1g067020 | 99.723 | 361 | 0 | 1 | 1 | 360 | 1 | 361 | 0.0 | 732 |
| MS.gene029882.t1 | MTR_6g078970 | 50.000 | 120 | 18 | 3 | 184 | 303 | 5 | 82 | 1.56e-23 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029882.t1 | AT2G20280 | 72.776 | 371 | 88 | 6 | 1 | 360 | 1 | 369 | 3.56e-160 | 453 |
Find 75 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTCCTGGCTCCTTAATT+TGG | 0.131430 | 1.4:+53921808 | None:intergenic |
| TTCAACAACCTTCTGCTTCT+TGG | 0.227516 | 1.4:+53926248 | None:intergenic |
| ATCTTGTTTGGGATCGGTTC+TGG | 0.237299 | 1.4:+53926143 | None:intergenic |
| TAATACCTTTGCATCTTGTT+TGG | 0.261505 | 1.4:+53926131 | None:intergenic |
| TGCCTGTTGGGCAGCCAAAC+TGG | 0.270781 | 1.4:+53924290 | None:intergenic |
| CTTAATTTGGATTGATGTCT+TGG | 0.282985 | 1.4:+53921821 | None:intergenic |
| ACCACCTGTTGCTGAGGTGC+TGG | 0.284681 | 1.4:+53921929 | None:intergenic |
| CAAGACATCAATCCAAATTA+AGG | 0.287429 | 1.4:-53921820 | MS.gene029882:CDS |
| CATCAGGTTCTGGTTCTCTT+TGG | 0.299666 | 1.4:+53923973 | None:intergenic |
| TGTTCAGTTTCATCAGGTTC+TGG | 0.302433 | 1.4:+53923963 | None:intergenic |
| GGAAGCAATATGGTTGGTTT+TGG | 0.321181 | 1.4:-53924614 | MS.gene029882:CDS |
| CCAAATGAAGGCTTTGTTAG+AGG | 0.323021 | 1.4:-53924523 | MS.gene029882:CDS |
| CCTCTAACAAAGCCTTCATT+TGG | 0.329335 | 1.4:+53924523 | None:intergenic |
| AATACCTTTGCATCTTGTTT+GGG | 0.345954 | 1.4:+53926132 | None:intergenic |
| ATACAATTCTTACCACCATT+TGG | 0.368919 | 1.4:+53924585 | None:intergenic |
| TGCCAGTTTGGCTGCCCAAC+AGG | 0.370933 | 1.4:-53924292 | MS.gene029882:CDS |
| TAGAACAACTCAGTAGTTAT+AGG | 0.372615 | 1.4:+53924348 | None:intergenic |
| TGGATCCATCTTCAGGGGAC+TGG | 0.376448 | 1.4:-53921972 | MS.gene029882:intron |
| CTTAGCCCTCTCTGCCTGTT+GGG | 0.378571 | 1.4:+53924278 | None:intergenic |
| ACTGGGAGTGCTGCTAATAA+TGG | 0.388945 | 1.4:-53921954 | MS.gene029882:CDS |
| TGATTACCAGGTGGGACTTT+AGG | 0.393605 | 1.4:+53925441 | None:intergenic |
| GTCCAATGCTAGCTTGTTTG+TGG | 0.394012 | 1.4:-53924021 | MS.gene029882:CDS |
| TGACGACGACGATGATGAAT+TGG | 0.394183 | 1.4:-53921880 | MS.gene029882:CDS |
| CAGGATTAAGCTTCAGCTCC+TGG | 0.399587 | 1.4:+53921795 | None:intergenic |
| GGATCCATCTTCAGGGGACT+GGG | 0.402542 | 1.4:-53921971 | MS.gene029882:intron |
| TCTTGTTTGGGATCGGTTCT+GGG | 0.408315 | 1.4:+53926144 | None:intergenic |
| CTCTAACAAAGCCTTCATTT+GGG | 0.418201 | 1.4:+53924524 | None:intergenic |
| TCTTAGCCCTCTCTGCCTGT+TGG | 0.422157 | 1.4:+53924277 | None:intergenic |
| GGACGAGAGAGATGCCAGTT+TGG | 0.425678 | 1.4:-53924304 | MS.gene029882:CDS |
| GTTGTTGAAGACAAAACTTT+CGG | 0.429860 | 1.4:-53926234 | MS.gene029882:CDS |
| ACATTCTGTTCAGTTTCATC+AGG | 0.434153 | 1.4:+53923957 | None:intergenic |
| CCACCTGTTGCTGAGGTGCT+GGG | 0.434200 | 1.4:+53921930 | None:intergenic |
| ATTTGAATGTTCAGAGGAAA+GGG | 0.439404 | 1.4:-53925066 | MS.gene029882:CDS |
| GGTCCCAGCACCTCAGCAAC+AGG | 0.448016 | 1.4:-53921933 | MS.gene029882:CDS |
| CTTTGCATCTTGTTTGGGAT+CGG | 0.453264 | 1.4:+53926137 | None:intergenic |
| ATCGTCGTCGTCAATGTCAT+CGG | 0.466901 | 1.4:+53921890 | None:intergenic |
| CGACGATGATGAATTGGACT+TGG | 0.483319 | 1.4:-53921874 | MS.gene029882:CDS |
| CTACTGAGTTGTTCTATCAA+TGG | 0.484577 | 1.4:-53924341 | MS.gene029882:CDS |
| CTTGGACGAGTTGAATGAAC+TGG | 0.496577 | 1.4:-53921856 | MS.gene029882:CDS |
| TGAGGAGGAGATTGAAAAGC+AGG | 0.498835 | 1.4:-53924478 | MS.gene029882:intron |
| TAAAGTGGGTCAGTGTGCTA+AGG | 0.499067 | 1.4:-53925113 | MS.gene029882:CDS |
| GGGCTAAGAATGACCGTATG+AGG | 0.510546 | 1.4:-53924263 | MS.gene029882:intron |
| GCGGTAGAGAGGAAGCAATA+TGG | 0.516289 | 1.4:-53924624 | MS.gene029882:CDS |
| AAAGTGGGTCAGTGTGCTAA+GGG | 0.517849 | 1.4:-53925112 | MS.gene029882:CDS |
| TGTTCTAAAATCCCAAATGA+AGG | 0.519608 | 1.4:-53924535 | MS.gene029882:CDS |
| ATAAATCATACAATATCTGT+TGG | 0.520423 | 1.4:+53924843 | None:intergenic |
| TCGTCGTCGTCAATGTCATC+GGG | 0.524494 | 1.4:+53921891 | None:intergenic |
| GGCTGCCCAACAGGCAGAGA+GGG | 0.524561 | 1.4:-53924283 | MS.gene029882:CDS |
| AACTCGCATAATACAGACTT+GGG | 0.525016 | 1.4:+53925139 | None:intergenic |
| GATTTGAATGTTCAGAGGAA+AGG | 0.525852 | 1.4:-53925067 | MS.gene029882:CDS |
| TCAAGAGACATTGGAGAAAG+TGG | 0.526557 | 1.4:-53924901 | MS.gene029882:CDS |
| CTCATGATTTGAATGTTCAG+AGG | 0.535502 | 1.4:-53925072 | MS.gene029882:CDS |
| TCAATCCAAATTAAGGAGCC+AGG | 0.536632 | 1.4:-53921813 | MS.gene029882:CDS |
| GATAATGAACATACCTCATA+CGG | 0.540126 | 1.4:+53924250 | None:intergenic |
| TATAGACATGCACTTCCACC+TGG | 0.544388 | 1.4:-53924561 | MS.gene029882:CDS |
| ATCCACAAACAAGCTAGCAT+TGG | 0.551369 | 1.4:+53924019 | None:intergenic |
| GGAAGAGAAGGCAAAAGAGA+AGG | 0.553385 | 1.4:-53925499 | MS.gene029882:CDS |
| ATCTGATAAAATGCCAATTG+AGG | 0.553676 | 1.4:-53924496 | MS.gene029882:CDS |
| TGTTAGATACAATGGAAGAG+TGG | 0.555431 | 1.4:-53924926 | MS.gene029882:intron |
| GTTAGATACAATGGAAGAGT+GGG | 0.563771 | 1.4:-53924925 | MS.gene029882:intron |
| AAACTCGCATAATACAGACT+TGG | 0.566958 | 1.4:+53925138 | None:intergenic |
| GTCTGCACCACCTGTTGCTG+AGG | 0.573436 | 1.4:+53921923 | None:intergenic |
| AGAGTGGGATCAAGAGACAT+TGG | 0.578286 | 1.4:-53924910 | MS.gene029882:CDS |
| GGGATCGGTTCTGGGTTGAA+CGG | 0.582346 | 1.4:+53926152 | None:intergenic |
| TAGAGAGGAAGCAATATGGT+TGG | 0.597838 | 1.4:-53924620 | MS.gene029882:CDS |
| CGATCCCAAACAAGATGCAA+AGG | 0.603297 | 1.4:-53926136 | MS.gene029882:intron |
| CAATTAAATGATTACCAGGT+GGG | 0.603634 | 1.4:+53925433 | None:intergenic |
| TGATAAAATGCCAATTGAGG+AGG | 0.604474 | 1.4:-53924493 | MS.gene029882:CDS |
| TTTGAATGTTCAGAGGAAAG+GGG | 0.609926 | 1.4:-53925065 | MS.gene029882:CDS |
| CCCAGCACCTCAGCAACAGG+TGG | 0.619651 | 1.4:-53921930 | MS.gene029882:CDS |
| TGATGTAGCCAAGAAGCAGA+AGG | 0.627538 | 1.4:-53926256 | MS.gene029882:CDS |
| AGAGACATTGGAGAAAGTGG+TGG | 0.637831 | 1.4:-53924898 | MS.gene029882:CDS |
| TACAGTGATAAGCGTGACGA+TGG | 0.639061 | 1.4:-53925028 | MS.gene029882:intron |
| TGGCTGCCCAACAGGCAGAG+AGG | 0.639365 | 1.4:-53924284 | MS.gene029882:CDS |
| AGTCAGCCTAAAGTCCCACC+TGG | 0.657066 | 1.4:-53925447 | MS.gene029882:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAAAATTACAAATATAAT+TGG | + | chr1.4:53922746-53922765 | None:intergenic | 10.0% |
| !!! | ATTAAGAAAAAAATAGATTT+TGG | - | chr1.4:53924522-53924541 | MS.gene029882:CDS | 10.0% |
| !! | ATCGAATTATAATTTATCTT+TGG | + | chr1.4:53922360-53922379 | None:intergenic | 15.0% |
| !!! | AAATGATTTTTTTAGCAAAA+TGG | - | chr1.4:53924582-53924601 | MS.gene029882:CDS | 15.0% |
| !!! | TAATATATCTGAATTTTGTT+AGG | - | chr1.4:53922910-53922929 | MS.gene029882:intron | 15.0% |
| !!! | TTTTTAAAGTGTATTACAAA+TGG | - | chr1.4:53923951-53923970 | MS.gene029882:intron | 15.0% |
| !!! | TTTTTTTTACTCATAACAAA+TGG | - | chr1.4:53924848-53924867 | MS.gene029882:intron | 15.0% |
| !! | AAAAAAAATCCAAAACAAAC+AGG | - | chr1.4:53924680-53924699 | MS.gene029882:intron | 20.0% |
| !! | AAAACCAAAAAGTAAGAAAA+AGG | + | chr1.4:53923123-53923142 | None:intergenic | 20.0% |
| !! | AAAAGGAATTTCTCAATTAA+AGG | + | chr1.4:53925839-53925858 | None:intergenic | 20.0% |
| !! | AAAGGAATTTCTCAATTAAA+GGG | + | chr1.4:53925838-53925857 | None:intergenic | 20.0% |
| !! | AAATTTAACAGTTGCAAATT+TGG | - | chr1.4:53924246-53924265 | MS.gene029882:intron | 20.0% |
| !! | AATAAAAGAGGAAAATGATT+TGG | + | chr1.4:53925761-53925780 | None:intergenic | 20.0% |
| !! | AGTTAGGAAAACAAAATATA+TGG | + | chr1.4:53926085-53926104 | None:intergenic | 20.0% |
| !! | ATAAATCATACAATATCTGT+TGG | + | chr1.4:53923239-53923258 | None:intergenic | 20.0% |
| !! | ATATACTATAACACATCTTT+AGG | - | chr1.4:53925584-53925603 | MS.gene029882:intron | 20.0% |
| !! | GAAAAAAAAAGAAAGAGAAA+AGG | + | chr1.4:53925886-53925905 | None:intergenic | 20.0% |
| !! | GTATGATTTATTAGATTTGT+TGG | - | chr1.4:53923248-53923267 | MS.gene029882:intron | 20.0% |
| !! | TAATCTACGATAAAAGAATA+TGG | + | chr1.4:53921999-53922018 | None:intergenic | 20.0% |
| !! | TGTAACAAATCTTTACATTA+CGG | - | chr1.4:53922822-53922841 | MS.gene029882:intron | 20.0% |
| !! | TTATCGTAGATTATTCAAAT+GGG | - | chr1.4:53922006-53922025 | MS.gene029882:intron | 20.0% |
| !! | TTCTAACATATTATGTAACA+TGG | - | chr1.4:53923679-53923698 | MS.gene029882:intron | 20.0% |
| !! | TTTATCGTAGATTATTCAAA+TGG | - | chr1.4:53922005-53922024 | MS.gene029882:intron | 20.0% |
| !! | TTTATTCTTGCTTATTCAAA+TGG | - | chr1.4:53923377-53923396 | MS.gene029882:intron | 20.0% |
| !!! | AGTAAAAAAAACATTTGCTA+TGG | + | chr1.4:53924839-53924858 | None:intergenic | 20.0% |
| !!! | ATTAGATAGATTTTTCAACT+GGG | - | chr1.4:53922243-53922262 | MS.gene029882:intron | 20.0% |
| !!! | CTTTTTGCATATAAAAAGAA+AGG | + | chr1.4:53925388-53925407 | None:intergenic | 20.0% |
| !!! | GTAAAAAAAACATTTGCTAT+GGG | + | chr1.4:53924838-53924857 | None:intergenic | 20.0% |
| !!! | TATCCACTTTCATTTTTTTA+TGG | - | chr1.4:53923299-53923318 | MS.gene029882:intron | 20.0% |
| !!! | TCTATTTTTTTCTTAATGCA+AGG | + | chr1.4:53924519-53924538 | None:intergenic | 20.0% |
| !!! | TTCTAGTTTTATGCAATTAT+GGG | - | chr1.4:53924340-53924359 | MS.gene029882:CDS | 20.0% |
| !!! | TTTCTAGTTTTATGCAATTA+TGG | - | chr1.4:53924339-53924358 | MS.gene029882:CDS | 20.0% |
| !!! | TTTTATGTTGTTAGATACAA+TGG | - | chr1.4:53923145-53923164 | MS.gene029882:intron | 20.0% |
| ! | AACCAAAAAGCAAATTTGAA+GGG | + | chr1.4:53924715-53924734 | None:intergenic | 25.0% |
| ! | ACACAAATTCATAAAACAAC+TGG | + | chr1.4:53924996-53925015 | None:intergenic | 25.0% |
| ! | ACAGCATCATAACAAAAAAA+TGG | + | chr1.4:53924301-53924320 | None:intergenic | 25.0% |
| ! | AGGAGTTCAAAAAATGTATT+AGG | - | chr1.4:53925705-53925724 | MS.gene029882:intron | 25.0% |
| ! | ATGACAATTAAATGATTACC+AGG | + | chr1.4:53922653-53922672 | None:intergenic | 25.0% |
| ! | CAAAAACTAGAAAGCAATAT+AGG | - | chr1.4:53925970-53925989 | MS.gene029882:intron | 25.0% |
| ! | GAAGATAATACAACATGATT+AGG | + | chr1.4:53924010-53924029 | None:intergenic | 25.0% |
| ! | GAGTTCAAAAAATGTATTAG+GGG | - | chr1.4:53925707-53925726 | MS.gene029882:intron | 25.0% |
| ! | GCAAATTATTCTAATAGACA+TGG | - | chr1.4:53925495-53925514 | MS.gene029882:CDS | 25.0% |
| ! | GGAGTTCAAAAAATGTATTA+GGG | - | chr1.4:53925706-53925725 | MS.gene029882:intron | 25.0% |
| ! | TAACAAAAAAATGGCAGTTA+TGG | + | chr1.4:53924292-53924311 | None:intergenic | 25.0% |
| ! | TAGCCATAAAAAAATGAAAG+TGG | + | chr1.4:53923305-53923324 | None:intergenic | 25.0% |
| ! | TATTATCTTCTTAAATGCAG+TGG | - | chr1.4:53924020-53924039 | MS.gene029882:CDS | 25.0% |
| ! | TCAATGGAAGAAGAAAAAAA+TGG | - | chr1.4:53923754-53923773 | MS.gene029882:intron | 25.0% |
| ! | TGGAAAATTGGAAAATTTGA+AGG | - | chr1.4:53924266-53924285 | MS.gene029882:CDS | 25.0% |
| ! | TTGCATAAAACTAGAAAAGT+AGG | + | chr1.4:53924336-53924355 | None:intergenic | 25.0% |
| !! | AAAAGTACATAAACAACGTA+CGG | + | chr1.4:53923412-53923431 | None:intergenic | 25.0% |
| !! | GTATTGATAAAGGATGTATT+TGG | + | chr1.4:53925249-53925268 | None:intergenic | 25.0% |
| !! | TACGTTGTTTATGTACTTTT+AGG | - | chr1.4:53923412-53923431 | MS.gene029882:intron | 25.0% |
| !!! | AAATTTGCTTTTTGGTTCAT+TGG | - | chr1.4:53924718-53924737 | MS.gene029882:intron | 25.0% |
| !!! | AATTGGTAGAGTATTGATAA+AGG | + | chr1.4:53925259-53925278 | None:intergenic | 25.0% |
| !!! | AGTTTTTGAAATTCAGTTGA+AGG | + | chr1.4:53925958-53925977 | None:intergenic | 25.0% |
| !!! | ATAAGCAATAAGTTGTTTTC+AGG | - | chr1.4:53922389-53922408 | MS.gene029882:intron | 25.0% |
| !!! | ATCATTTTTCTGTAGTTCAA+TGG | - | chr1.4:53922859-53922878 | MS.gene029882:intron | 25.0% |
| !!! | ATTATGCGAGTTTTTTAAAG+TGG | - | chr1.4:53922951-53922970 | MS.gene029882:intron | 25.0% |
| !!! | ATTTTTTGAACTCCTTCATA+TGG | + | chr1.4:53925700-53925719 | None:intergenic | 25.0% |
| !!! | ATTTTTTTATGGCTAATTCG+AGG | - | chr1.4:53923310-53923329 | MS.gene029882:intron | 25.0% |
| !!! | CATTAGATAGATTTTTCAAC+TGG | - | chr1.4:53922242-53922261 | MS.gene029882:intron | 25.0% |
| !!! | CTTTCCTTTTTCTTACTTTT+TGG | - | chr1.4:53923116-53923135 | MS.gene029882:intron | 25.0% |
| !!! | GTTTAATTTTGATACACTGT+CGG | - | chr1.4:53922687-53922706 | MS.gene029882:intron | 25.0% |
| !!! | TAATTTTAATGGCTTTTCCA+TGG | - | chr1.4:53924170-53924189 | MS.gene029882:intron | 25.0% |
| !!! | TATTTTGTTTTCCTAACTGT+TGG | - | chr1.4:53926087-53926106 | MS.gene029882:intron | 25.0% |
| !!! | TCATTTTTCTGTAGTTCAAT+GGG | - | chr1.4:53922860-53922879 | MS.gene029882:intron | 25.0% |
| !!! | TTATGCGAGTTTTTTAAAGT+GGG | - | chr1.4:53922952-53922971 | MS.gene029882:intron | 25.0% |
| !!! | TTTTTTGAACTCCTTCATAT+GGG | + | chr1.4:53925699-53925718 | None:intergenic | 25.0% |
| AATACTCTACCAATTTGTCT+TGG | - | chr1.4:53925264-53925283 | MS.gene029882:intron | 30.0% | |
| AATTTCTCAATTAAAGGGAG+AGG | + | chr1.4:53925833-53925852 | None:intergenic | 30.0% | |
| ACAATTAAATGATTACCAGG+TGG | + | chr1.4:53922650-53922669 | None:intergenic | 30.0% | |
| ACCAATTTGTCTTGGAAAAT+TGG | - | chr1.4:53925272-53925291 | MS.gene029882:intron | 30.0% | |
| AGGAAAAGGGAAATATTGAA+GGG | - | chr1.4:53923907-53923926 | MS.gene029882:intron | 30.0% | |
| ATACAATTCTTACCACCATT+TGG | + | chr1.4:53923497-53923516 | None:intergenic | 30.0% | |
| ATCTGATAAAATGCCAATTG+AGG | - | chr1.4:53923583-53923602 | MS.gene029882:intron | 30.0% | |
| ATTAAGCTGTTTATCCAAAC+AGG | + | chr1.4:53922283-53922302 | None:intergenic | 30.0% | |
| ATTGGATCTTAGTTTAGACA+TGG | - | chr1.4:53924736-53924755 | MS.gene029882:intron | 30.0% | |
| ATTTGAATGTTCAGAGGAAA+GGG | - | chr1.4:53923013-53923032 | MS.gene029882:intron | 30.0% | |
| CAAGACATCAATCCAAATTA+AGG | - | chr1.4:53926259-53926278 | MS.gene029882:CDS | 30.0% | |
| CAATTAAATGATTACCAGGT+GGG | + | chr1.4:53922649-53922668 | None:intergenic | 30.0% | |
| CAGTTGCAAATTTGGAAAAT+TGG | - | chr1.4:53924254-53924273 | MS.gene029882:intron | 30.0% | |
| GAACCAAAAAGCAAATTTGA+AGG | + | chr1.4:53924716-53924735 | None:intergenic | 30.0% | |
| GATAAAATCTGCAATATGAC+TGG | - | chr1.4:53924198-53924217 | MS.gene029882:intron | 30.0% | |
| GATAATGAACATACCTCATA+CGG | + | chr1.4:53923832-53923851 | None:intergenic | 30.0% | |
| GTAATTAGTGTCTCATCTTT+AGG | - | chr1.4:53924937-53924956 | MS.gene029882:intron | 30.0% | |
| GTTGTTGAAGACAAAACTTT+CGG | - | chr1.4:53921845-53921864 | MS.gene029882:CDS | 30.0% | |
| TAATACCTTTGCATCTTGTT+TGG | + | chr1.4:53921951-53921970 | None:intergenic | 30.0% | |
| TAGAACAACTCAGTAGTTAT+AGG | + | chr1.4:53923734-53923753 | None:intergenic | 30.0% | |
| TCGAATAAGCCAATCAAAAA+AGG | - | chr1.4:53922204-53922223 | MS.gene029882:intron | 30.0% | |
| TGTGCTTATAAACAAGAACT+AGG | + | chr1.4:53925556-53925575 | None:intergenic | 30.0% | |
| TGTGTCTAGAAATTTGCAAA+CGG | + | chr1.4:53925211-53925230 | None:intergenic | 30.0% | |
| TTAAGCTGTTTATCCAAACA+GGG | + | chr1.4:53922282-53922301 | None:intergenic | 30.0% | |
| TTATAGCTCAAAACATGAGA+AGG | + | chr1.4:53924892-53924911 | None:intergenic | 30.0% | |
| TTCAAAAAATGTATTAGGGG+AGG | - | chr1.4:53925710-53925729 | MS.gene029882:intron | 30.0% | |
| TTGGATCTTAGTTTAGACAT+GGG | - | chr1.4:53924737-53924756 | MS.gene029882:intron | 30.0% | |
| TTTATATCATTCAGTGTTGC+TGG | - | chr1.4:53922883-53922902 | MS.gene029882:intron | 30.0% | |
| ! | AATACCTTTGCATCTTGTTT+GGG | + | chr1.4:53921950-53921969 | None:intergenic | 30.0% |
| ! | ACTCATAACAAATGGCTTTT+AGG | - | chr1.4:53924856-53924875 | MS.gene029882:CDS | 30.0% |
| ! | ATTCAGTTGAAGGATTTGTT+TGG | + | chr1.4:53925948-53925967 | None:intergenic | 30.0% |
| ! | CTTAATTTGGATTGATGTCT+TGG | + | chr1.4:53926261-53926280 | None:intergenic | 30.0% |
| ! | GCAGATTTTATCTATATCCA+TGG | + | chr1.4:53924190-53924209 | None:intergenic | 30.0% |
| ! | GCGTCTCTTTGTAATTTTAA+TGG | - | chr1.4:53924159-53924178 | MS.gene029882:intron | 30.0% |
| ! | GTCAATAGATTAGCTCATAT+AGG | - | chr1.4:53922501-53922520 | MS.gene029882:intron | 30.0% |
| ! | GTTTGTAACTTTTATGCATG+AGG | - | chr1.4:53924809-53924828 | MS.gene029882:intron | 30.0% |
| ! | TCCAATTTTCCAAGACAAAT+TGG | + | chr1.4:53925276-53925295 | None:intergenic | 30.0% |
| ! | TCCTTTTTAATCGAGGAAAA+GGG | - | chr1.4:53923894-53923913 | MS.gene029882:intron | 30.0% |
| ! | TTAGGTATGCAAACACTTTT+TGG | - | chr1.4:53923430-53923449 | MS.gene029882:intron | 30.0% |
| ! | TTATATCATTCAGTGTTGCT+GGG | - | chr1.4:53922884-53922903 | MS.gene029882:intron | 30.0% |
| ! | TTCAGTTGAAGGATTTGTTT+GGG | + | chr1.4:53925947-53925966 | None:intergenic | 30.0% |
| ! | TTGCAAACGGACTTATATTT+AGG | + | chr1.4:53925198-53925217 | None:intergenic | 30.0% |
| ! | TTTTCCTCGATTAAAAAGGA+GGG | + | chr1.4:53923894-53923913 | None:intergenic | 30.0% |
| !! | AATAGACATGGAATTTGTTG+TGG | - | chr1.4:53925507-53925526 | MS.gene029882:CDS | 30.0% |
| !! | AGAAGTTCACTTAGTTTGTA+AGG | - | chr1.4:53925454-53925473 | MS.gene029882:CDS | 30.0% |
| !! | CCTAATCTGTTATGTTTTGA+CGG | - | chr1.4:53922540-53922559 | MS.gene029882:intron | 30.0% |
| !! | TACCCTTCAAATTTGCTTTT+TGG | - | chr1.4:53924710-53924729 | MS.gene029882:intron | 30.0% |
| !! | TGTTCTAAAATCCCAAATGA+AGG | - | chr1.4:53923544-53923563 | MS.gene029882:intron | 30.0% |
| !!! | ACACATCTTTAGGTTTTGTT+TGG | - | chr1.4:53925594-53925613 | MS.gene029882:intron | 30.0% |
| !!! | CACATCTTTAGGTTTTGTTT+GGG | - | chr1.4:53925595-53925614 | MS.gene029882:intron | 30.0% |
| !!! | TAGTAAGAGCCTTTTTTGAT+TGG | + | chr1.4:53922216-53922235 | None:intergenic | 30.0% |
| AAACTCGCATAATACAGACT+TGG | + | chr1.4:53922944-53922963 | None:intergenic | 35.0% | |
| AAATGACGATGCTTCTTGTA+AGG | + | chr1.4:53923642-53923661 | None:intergenic | 35.0% | |
| AACTCGCATAATACAGACTT+GGG | + | chr1.4:53922943-53922962 | None:intergenic | 35.0% | |
| AAGGTAGGTGGTAAGTATAT+TGG | - | chr1.4:53925473-53925492 | MS.gene029882:CDS | 35.0% | |
| AAGTACCCTATTAATAGGGA+TGG | - | chr1.4:53925413-53925432 | MS.gene029882:intron | 35.0% | |
| AATCATTATCCCACTAAGAG+GGG | + | chr1.4:53926020-53926039 | None:intergenic | 35.0% | |
| AATGACGATGCTTCTTGTAA+GGG | + | chr1.4:53923641-53923660 | None:intergenic | 35.0% | |
| ACAAGAGATTGTCCAAAACA+TGG | - | chr1.4:53925062-53925081 | MS.gene029882:CDS | 35.0% | |
| ACAAGCTGTTTATCCAAACA+GGG | + | chr1.4:53922045-53922064 | None:intergenic | 35.0% | |
| ACATTCTGTTCAGTTTCATC+AGG | + | chr1.4:53924125-53924144 | None:intergenic | 35.0% | |
| AGGAATTTCTCACCTTTGTT+TGG | + | chr1.4:53925866-53925885 | None:intergenic | 35.0% | |
| AGTGCAAGCTCAAAAGATAT+AGG | + | chr1.4:53924967-53924986 | None:intergenic | 35.0% | |
| ATTGGGATTTATGGTGCAAA+TGG | - | chr1.4:53924782-53924801 | MS.gene029882:intron | 35.0% | |
| CAATCATTATCCCACTAAGA+GGG | + | chr1.4:53926021-53926040 | None:intergenic | 35.0% | |
| CCAGTAACAATTGGGATTTA+TGG | - | chr1.4:53924773-53924792 | MS.gene029882:intron | 35.0% | |
| CCATAAATCCCAATTGTTAC+TGG | + | chr1.4:53924776-53924795 | None:intergenic | 35.0% | |
| CCGTCAAAACATAACAGATT+AGG | + | chr1.4:53922543-53922562 | None:intergenic | 35.0% | |
| CTACTGAGTTGTTCTATCAA+TGG | - | chr1.4:53923738-53923757 | MS.gene029882:intron | 35.0% | |
| CTCATGATTTGAATGTTCAG+AGG | - | chr1.4:53923007-53923026 | MS.gene029882:intron | 35.0% | |
| CTCTAACAAAGCCTTCATTT+GGG | + | chr1.4:53923558-53923577 | None:intergenic | 35.0% | |
| GAGGAAAAGGGAAATATTGA+AGG | - | chr1.4:53923906-53923925 | MS.gene029882:intron | 35.0% | |
| GATTTGAATGTTCAGAGGAA+AGG | - | chr1.4:53923012-53923031 | MS.gene029882:intron | 35.0% | |
| GGAAAAGGGAAATATTGAAG+GGG | - | chr1.4:53923908-53923927 | MS.gene029882:intron | 35.0% | |
| GTTAGATACAATGGAAGAGT+GGG | - | chr1.4:53923154-53923173 | MS.gene029882:intron | 35.0% | |
| TGATAAAATGCCAATTGAGG+AGG | - | chr1.4:53923586-53923605 | MS.gene029882:intron | 35.0% | |
| TGCTGTGTGATTATTGTGTA+TGG | - | chr1.4:53925114-53925133 | MS.gene029882:CDS | 35.0% | |
| TGGATCTTAGTTTAGACATG+GGG | - | chr1.4:53924738-53924757 | MS.gene029882:intron | 35.0% | |
| TGTTAGATACAATGGAAGAG+TGG | - | chr1.4:53923153-53923172 | MS.gene029882:intron | 35.0% | |
| TTGACGGTAACAGAAAAAGA+AGG | - | chr1.4:53922556-53922575 | MS.gene029882:intron | 35.0% | |
| TTGGGATTTATGGTGCAAAT+GGG | - | chr1.4:53924783-53924802 | MS.gene029882:intron | 35.0% | |
| TTTCCTCGATTAAAAAGGAG+GGG | + | chr1.4:53923893-53923912 | None:intergenic | 35.0% | |
| TTTGAATGTTCAGAGGAAAG+GGG | - | chr1.4:53923014-53923033 | MS.gene029882:intron | 35.0% | |
| TTTGGGAGTTAGGAAAAAGA+GGG | + | chr1.4:53925930-53925949 | None:intergenic | 35.0% | |
| TTTGTGTCTGAATTCCTGTT+TGG | - | chr1.4:53925009-53925028 | MS.gene029882:intron | 35.0% | |
| ! | AATGTATTAGGGGAGGATTT+TGG | - | chr1.4:53925717-53925736 | MS.gene029882:intron | 35.0% |
| ! | ACCAAATGAGTCTTATAAGC+AGG | + | chr1.4:53925162-53925181 | None:intergenic | 35.0% |
| ! | AGCAAATTTGAAGGGTACAT+AGG | + | chr1.4:53924707-53924726 | None:intergenic | 35.0% |
| ! | AGGAGTTGTAGTTTTCACTT+GGG | + | chr1.4:53923714-53923733 | None:intergenic | 35.0% |
| ! | ATTTTCCAAAGCCATGGTTT+TGG | + | chr1.4:53925039-53925058 | None:intergenic | 35.0% |
| ! | CCAAATGAGTCTTATAAGCA+GGG | + | chr1.4:53925161-53925180 | None:intergenic | 35.0% |
| ! | CTCCTTTTTAATCGAGGAAA+AGG | - | chr1.4:53923893-53923912 | MS.gene029882:intron | 35.0% |
| ! | CTTTTCCTCGATTAAAAAGG+AGG | + | chr1.4:53923895-53923914 | None:intergenic | 35.0% |
| ! | GCAAATTTGAAGGGTACATA+GGG | + | chr1.4:53924706-53924725 | None:intergenic | 35.0% |
| ! | GCCAAAGTACCCTATTAATA+GGG | - | chr1.4:53925409-53925428 | MS.gene029882:intron | 35.0% |
| ! | GGAATTTCTCACCTTTGTTT+GGG | + | chr1.4:53925865-53925884 | None:intergenic | 35.0% |
| ! | GTGCATGTCATTAGTTGTTT+TGG | - | chr1.4:53922445-53922464 | MS.gene029882:intron | 35.0% |
| ! | TAGGAGTTGTAGTTTTCACT+TGG | + | chr1.4:53923715-53923734 | None:intergenic | 35.0% |
| ! | TCCCTATTAATAGGGTACTT+TGG | + | chr1.4:53925413-53925432 | None:intergenic | 35.0% |
| ! | TCCCTTTTCCTCGATTAAAA+AGG | + | chr1.4:53923898-53923917 | None:intergenic | 35.0% |
| ! | TGCCAAAGTACCCTATTAAT+AGG | - | chr1.4:53925408-53925427 | MS.gene029882:intron | 35.0% |
| ! | TTCCTTTTTCTCCCAAACAA+AGG | - | chr1.4:53925851-53925870 | MS.gene029882:intron | 35.0% |
| ! | TTTTCAATCTCCTCCTCAAT+TGG | + | chr1.4:53923599-53923618 | None:intergenic | 35.0% |
| ! | TTTTCCAAAGCCATGGTTTT+GGG | + | chr1.4:53925038-53925057 | None:intergenic | 35.0% |
| ! | TTTTTGCATGCGACAATGTA+TGG | - | chr1.4:53924913-53924932 | MS.gene029882:CDS | 35.0% |
| !! | AAAACCATGGCTTTGGAAAA+TGG | - | chr1.4:53925038-53925057 | MS.gene029882:CDS | 35.0% |
| !! | ACATCAGCTTTTGATTGCTT+CGG | + | chr1.4:53921809-53921828 | None:intergenic | 35.0% |
| !! | ATGCAAACACTTTTTGGATG+CGG | - | chr1.4:53923436-53923455 | MS.gene029882:intron | 35.0% |
| !! | CAGCATGTTTGTTTTCTGTT+AGG | + | chr1.4:53925099-53925118 | None:intergenic | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+TGG | - | chr1.4:53922094-53922113 | MS.gene029882:intron | 35.0% |
| !! | GTTCACTTAGTTTGTAAGGT+AGG | - | chr1.4:53925458-53925477 | MS.gene029882:CDS | 35.0% |
| !! | TAACAAATGGCTTTTAGGAG+TGG | - | chr1.4:53924861-53924880 | MS.gene029882:CDS | 35.0% |
| !!! | GATTTTAGAACATATCCAGG+TGG | + | chr1.4:53923536-53923555 | None:intergenic | 35.0% |
| !!! | GTGTTTGCTTCTTGTTGTTT+TGG | - | chr1.4:53923084-53923103 | MS.gene029882:intron | 35.0% |
| !!! | TCTTGTTGTTTTGGTTCTGA+TGG | - | chr1.4:53923093-53923112 | MS.gene029882:intron | 35.0% |
| !!! | TGGGATTTTAGAACATATCC+AGG | + | chr1.4:53923539-53923558 | None:intergenic | 35.0% |
| AAATCCCAATTGTTACTGGC+TGG | + | chr1.4:53924772-53924791 | None:intergenic | 40.0% | |
| AAATTACAAAGAGACGCGCT+AGG | + | chr1.4:53924156-53924175 | None:intergenic | 40.0% | |
| AACTGTTGGATCCATCTTCA+GGG | - | chr1.4:53926101-53926120 | MS.gene029882:intron | 40.0% | |
| AAGGAAGGAAGGAAAATGGA+AGG | - | chr1.4:53925621-53925640 | MS.gene029882:intron | 40.0% | |
| ACCCTATTAATAGGGATGGA+GGG | - | chr1.4:53925417-53925436 | MS.gene029882:intron | 40.0% | |
| ACGGTAACAGAAAAAGAAGG+AGG | - | chr1.4:53922559-53922578 | MS.gene029882:intron | 40.0% | |
| AGGAAGGAAGGAAAATGGAA+GGG | - | chr1.4:53925622-53925641 | MS.gene029882:intron | 40.0% | |
| AGTACATAAACAACGTACGG+AGG | + | chr1.4:53923409-53923428 | None:intergenic | 40.0% | |
| ATCCACAAACAAGCTAGCAT+TGG | + | chr1.4:53924063-53924082 | None:intergenic | 40.0% | |
| ATGACGATGCTTCTTGTAAG+GGG | + | chr1.4:53923640-53923659 | None:intergenic | 40.0% | |
| ATTGTCCAAAACATGGTCGA+GGG | - | chr1.4:53925069-53925088 | MS.gene029882:CDS | 40.0% | |
| CCAATCATTATCCCACTAAG+AGG | + | chr1.4:53926022-53926041 | None:intergenic | 40.0% | |
| CCCTGCTTATAAGACTCATT+TGG | - | chr1.4:53925158-53925177 | MS.gene029882:intron | 40.0% | |
| CCTCTAACAAAGCCTTCATT+TGG | + | chr1.4:53923559-53923578 | None:intergenic | 40.0% | |
| CCTCTTAGTGGGATAATGAT+TGG | - | chr1.4:53926019-53926038 | MS.gene029882:intron | 40.0% | |
| CTTAGTGGGATAATGATTGG+TGG | - | chr1.4:53926022-53926041 | MS.gene029882:intron | 40.0% | |
| GAAAAAGAAGGAGGAAGAGA+AGG | - | chr1.4:53922568-53922587 | MS.gene029882:intron | 40.0% | |
| GACAAGCTGTTTATCCAAAC+AGG | + | chr1.4:53922046-53922065 | None:intergenic | 40.0% | |
| GTTTGGGAGTTAGGAAAAAG+AGG | + | chr1.4:53925931-53925950 | None:intergenic | 40.0% | |
| TAACAGATTAGGAGCCTTTC+TGG | + | chr1.4:53922532-53922551 | None:intergenic | 40.0% | |
| TAACTGTTGGATCCATCTTC+AGG | - | chr1.4:53926100-53926119 | MS.gene029882:intron | 40.0% | |
| TACCCTATTAATAGGGATGG+AGG | - | chr1.4:53925416-53925435 | MS.gene029882:intron | 40.0% | |
| TAGAGAGGAAGCAATATGGT+TGG | - | chr1.4:53923459-53923478 | MS.gene029882:intron | 40.0% | |
| TCAAGAGACATTGGAGAAAG+TGG | - | chr1.4:53923178-53923197 | MS.gene029882:intron | 40.0% | |
| TCAATCCAAATTAAGGAGCC+AGG | - | chr1.4:53926266-53926285 | MS.gene029882:CDS | 40.0% | |
| TCATATAGGCCAATCCAGAA+AGG | - | chr1.4:53922515-53922534 | MS.gene029882:intron | 40.0% | |
| TCCCTCCATCCCTATTAATA+GGG | + | chr1.4:53925421-53925440 | None:intergenic | 40.0% | |
| TGAAGATGGATCCAACAGTT+AGG | + | chr1.4:53926101-53926120 | None:intergenic | 40.0% | |
| TGTTCAGTTTCATCAGGTTC+TGG | + | chr1.4:53924119-53924138 | None:intergenic | 40.0% | |
| TTCAACAACCTTCTGCTTCT+TGG | + | chr1.4:53921834-53921853 | None:intergenic | 40.0% | |
| TTGAACTCCTTCATATGGGA+GGG | + | chr1.4:53925695-53925714 | None:intergenic | 40.0% | |
| TTGGGAGTTAGGAAAAAGAG+GGG | + | chr1.4:53925929-53925948 | None:intergenic | 40.0% | |
| TTTGAACTCCTTCATATGGG+AGG | + | chr1.4:53925696-53925715 | None:intergenic | 40.0% | |
| ! | CACCTTTGTTTGGGAGAAAA+AGG | + | chr1.4:53925856-53925875 | None:intergenic | 40.0% |
| ! | CTTTGCATCTTGTTTGGGAT+CGG | + | chr1.4:53921945-53921964 | None:intergenic | 40.0% |
| ! | GAAGGATTTGTTTGGGAGTT+AGG | + | chr1.4:53925940-53925959 | None:intergenic | 40.0% |
| ! | GGATAATGATTGGTGGTTGT+TGG | - | chr1.4:53926029-53926048 | MS.gene029882:intron | 40.0% |
| ! | TACATAGGGCCTGTTTGTTT+TGG | + | chr1.4:53924692-53924711 | None:intergenic | 40.0% |
| ! | TATTAGGGGAGGATTTTGGA+GGG | - | chr1.4:53925721-53925740 | MS.gene029882:intron | 40.0% |
| ! | TGTACCATTTTCCAAAGCCA+TGG | + | chr1.4:53925045-53925064 | None:intergenic | 40.0% |
| ! | TGTTTGGAATCCCAAAACCA+TGG | - | chr1.4:53925025-53925044 | MS.gene029882:intron | 40.0% |
| ! | TTTTCTGCTTATGCCCTGTT+TGG | - | chr1.4:53922029-53922048 | MS.gene029882:intron | 40.0% |
| ! | TTTTGGTCATGTCCAAATGG+TGG | - | chr1.4:53923482-53923501 | MS.gene029882:intron | 40.0% |
| !! | CACTTAGTTTGTAAGGTAGG+TGG | - | chr1.4:53925461-53925480 | MS.gene029882:CDS | 40.0% |
| !! | CCAAATGAAGGCTTTGTTAG+AGG | - | chr1.4:53923556-53923575 | MS.gene029882:intron | 40.0% |
| !!! | ATGGTTTTGGGATTCCAAAC+AGG | + | chr1.4:53925026-53925045 | None:intergenic | 40.0% |
| !!! | GGAAGCAATATGGTTGGTTT+TGG | - | chr1.4:53923465-53923484 | MS.gene029882:intron | 40.0% |
| !!! | TGGTTTTGGTCATGTCCAAA+TGG | - | chr1.4:53923479-53923498 | MS.gene029882:intron | 40.0% |
| !!! | TTAGGTTTTGTTTGGGCGAA+AGG | - | chr1.4:53925602-53925621 | MS.gene029882:intron | 40.0% |
| AAAGTGGGTCAGTGTGCTAA+GGG | - | chr1.4:53922967-53922986 | MS.gene029882:intron | 45.0% | |
| AAGGGATGATAACCCTTGCA+TGG | - | chr1.4:53925640-53925659 | MS.gene029882:intron | 45.0% | |
| ACTAAGACCCTCCCATATGA+AGG | - | chr1.4:53925685-53925704 | MS.gene029882:intron | 45.0% | |
| ACTGTTGGATCCATCTTCAG+GGG | - | chr1.4:53926102-53926121 | MS.gene029882:intron | 45.0% | |
| AGAGACATTGGAGAAAGTGG+TGG | - | chr1.4:53923181-53923200 | MS.gene029882:intron | 45.0% | |
| AGAGTGGGATCAAGAGACAT+TGG | - | chr1.4:53923169-53923188 | MS.gene029882:intron | 45.0% | |
| AGGGATGATAACCCTTGCAT+GGG | - | chr1.4:53925641-53925660 | MS.gene029882:intron | 45.0% | |
| ATCGTCGTCGTCAATGTCAT+CGG | + | chr1.4:53926192-53926211 | None:intergenic | 45.0% | |
| ATGGGAGGGTCTTAGTTTCA+TGG | + | chr1.4:53925681-53925700 | None:intergenic | 45.0% | |
| CATGCCAGCCAGTAACAATT+GGG | - | chr1.4:53924765-53924784 | MS.gene029882:intron | 45.0% | |
| CGACGATGATGAATTGGACT+TGG | - | chr1.4:53926205-53926224 | MS.gene029882:CDS | 45.0% | |
| CGATCCCAAACAAGATGCAA+AGG | - | chr1.4:53921943-53921962 | MS.gene029882:CDS | 45.0% | |
| CTCCCTCCATCCCTATTAAT+AGG | + | chr1.4:53925422-53925441 | None:intergenic | 45.0% | |
| GAATCCCAAAACCATGGCTT+TGG | - | chr1.4:53925031-53925050 | MS.gene029882:CDS | 45.0% | |
| GATTAGGAGCCTTTCTGGAT+TGG | + | chr1.4:53922527-53922546 | None:intergenic | 45.0% | |
| GATTGTCCAAAACATGGTCG+AGG | - | chr1.4:53925068-53925087 | MS.gene029882:CDS | 45.0% | |
| GCGAAAGGAAGGAAGGAAAA+TGG | - | chr1.4:53925617-53925636 | MS.gene029882:intron | 45.0% | |
| GGAAGAGAAGGCAAAAGAGA+AGG | - | chr1.4:53922580-53922599 | MS.gene029882:intron | 45.0% | |
| GTCTTATAAGCAGGGACACA+TGG | + | chr1.4:53925153-53925172 | None:intergenic | 45.0% | |
| TAAAGTGGGTCAGTGTGCTA+AGG | - | chr1.4:53922966-53922985 | MS.gene029882:intron | 45.0% | |
| TACAGTGATAAGCGTGACGA+TGG | - | chr1.4:53923051-53923070 | MS.gene029882:intron | 45.0% | |
| TATAGACATGCACTTCCACC+TGG | - | chr1.4:53923518-53923537 | MS.gene029882:intron | 45.0% | |
| TGACGACGACGATGATGAAT+TGG | - | chr1.4:53926199-53926218 | MS.gene029882:CDS | 45.0% | |
| TGACGATGCTTCTTGTAAGG+GGG | + | chr1.4:53923639-53923658 | None:intergenic | 45.0% | |
| TGAGGAGGAGATTGAAAAGC+AGG | - | chr1.4:53923601-53923620 | MS.gene029882:intron | 45.0% | |
| TGATGTAGCCAAGAAGCAGA+AGG | - | chr1.4:53921823-53921842 | MS.gene029882:CDS | 45.0% | |
| TGATTACCAGGTGGGACTTT+AGG | + | chr1.4:53922641-53922660 | None:intergenic | 45.0% | |
| TGGGAGTTAGGAAAAAGAGG+GGG | + | chr1.4:53925928-53925947 | None:intergenic | 45.0% | |
| TTAGGAAAAAGAGGGGGGAA+GGG | + | chr1.4:53925922-53925941 | None:intergenic | 45.0% | |
| ! | AATTGTTACTGGCTGGCATG+GGG | + | chr1.4:53924765-53924784 | None:intergenic | 45.0% |
| ! | ACTTTTTGGATGCGGTAGAG+AGG | - | chr1.4:53923444-53923463 | MS.gene029882:intron | 45.0% |
| ! | ATCTTGTTTGGGATCGGTTC+TGG | + | chr1.4:53921939-53921958 | None:intergenic | 45.0% |
| ! | CAATTGTTACTGGCTGGCAT+GGG | + | chr1.4:53924766-53924785 | None:intergenic | 45.0% |
| ! | CTTGGACGAGTTGAATGAAC+TGG | - | chr1.4:53926223-53926242 | MS.gene029882:CDS | 45.0% |
| ! | GAAATCCCTCGACCATGTTT+TGG | + | chr1.4:53925077-53925096 | None:intergenic | 45.0% |
| ! | GTATTAGGGGAGGATTTTGG+AGG | - | chr1.4:53925720-53925739 | MS.gene029882:intron | 45.0% |
| ! | TAGCCCCTCCTTTTTAATCG+AGG | - | chr1.4:53923887-53923906 | MS.gene029882:intron | 45.0% |
| ! | TCTTGTTTGGGATCGGTTCT+GGG | + | chr1.4:53921938-53921957 | None:intergenic | 45.0% |
| ! | TTCAACTGGGTTTTCTGCGT+AGG | - | chr1.4:53922256-53922275 | MS.gene029882:intron | 45.0% |
| !! | ACTGGGAGTGCTGCTAATAA+TGG | - | chr1.4:53926125-53926144 | MS.gene029882:intron | 45.0% |
| !! | CATCAGGTTCTGGTTCTCTT+TGG | + | chr1.4:53924109-53924128 | None:intergenic | 45.0% |
| !! | GTCCAATGCTAGCTTGTTTG+TGG | - | chr1.4:53924058-53924077 | MS.gene029882:intron | 45.0% |
| !! | TCAGCTTTTGATTGCTTCGG+AGG | + | chr1.4:53921806-53921825 | None:intergenic | 45.0% |
| !!! | GTTTTGTTTGGGCGAAAGGA+AGG | - | chr1.4:53925606-53925625 | MS.gene029882:intron | 45.0% |
| !! | ATAAATATTATAAATAAAAG+AGG | + | chr1.4:53925773-53925792 | None:intergenic | 5.0% |
| AAGAACAAACCCCCCATGCA+AGG | + | chr1.4:53925656-53925675 | None:intergenic | 50.0% | |
| AGAACAAACCCCCCATGCAA+GGG | + | chr1.4:53925655-53925674 | None:intergenic | 50.0% | |
| ATGTAGCTGACCCCTCTTAG+TGG | - | chr1.4:53926007-53926026 | MS.gene029882:intron | 50.0% | |
| CAGCTCCTGGCTCCTTAATT+TGG | + | chr1.4:53926274-53926293 | None:intergenic | 50.0% | |
| CCATGCCAGCCAGTAACAAT+TGG | - | chr1.4:53924764-53924783 | MS.gene029882:intron | 50.0% | |
| GATGATAACCCTTGCATGGG+GGG | - | chr1.4:53925644-53925663 | MS.gene029882:intron | 50.0% | |
| GCGGTAGAGAGGAAGCAATA+TGG | - | chr1.4:53923455-53923474 | MS.gene029882:intron | 50.0% | |
| GGATGATAACCCTTGCATGG+GGG | - | chr1.4:53925643-53925662 | MS.gene029882:intron | 50.0% | |
| GGGAGTTAGGAAAAAGAGGG+GGG | + | chr1.4:53925927-53925946 | None:intergenic | 50.0% | |
| GGGATGATAACCCTTGCATG+GGG | - | chr1.4:53925642-53925661 | MS.gene029882:intron | 50.0% | |
| GGGCTAAGAATGACCGTATG+AGG | - | chr1.4:53923816-53923835 | MS.gene029882:intron | 50.0% | |
| GTTAGGAAAAAGAGGGGGGA+AGG | + | chr1.4:53925923-53925942 | None:intergenic | 50.0% | |
| TCGTCGTCGTCAATGTCATC+GGG | + | chr1.4:53926191-53926210 | None:intergenic | 50.0% | |
| TGTAGCTGACCCCTCTTAGT+GGG | - | chr1.4:53926008-53926027 | MS.gene029882:intron | 50.0% | |
| TGTTTGGGCGAAAGGAAGGA+AGG | - | chr1.4:53925610-53925629 | MS.gene029882:intron | 50.0% | |
| ! | CCAATTGTTACTGGCTGGCA+TGG | + | chr1.4:53924767-53924786 | None:intergenic | 50.0% |
| ! | TTTTCTGCGTAGGCCCTGTT+TGG | - | chr1.4:53922266-53922285 | MS.gene029882:intron | 50.0% |
| !!! | TGAAGGGGCTGCGTGTTTTT+TGG | - | chr1.4:53923923-53923942 | MS.gene029882:intron | 50.0% |
| AGTCAGCCTAAAGTCCCACC+TGG | - | chr1.4:53922632-53922651 | MS.gene029882:intron | 55.0% | |
| CTTAGCCCTCTCTGCCTGTT+GGG | + | chr1.4:53923804-53923823 | None:intergenic | 55.0% | |
| GGACGAGAGAGATGCCAGTT+TGG | - | chr1.4:53923775-53923794 | MS.gene029882:intron | 55.0% | |
| GGATCCATCTTCAGGGGACT+GGG | - | chr1.4:53926108-53926127 | MS.gene029882:intron | 55.0% | |
| TCTTAGCCCTCTCTGCCTGT+TGG | + | chr1.4:53923805-53923824 | None:intergenic | 55.0% | |
| TGGATCCATCTTCAGGGGAC+TGG | - | chr1.4:53926107-53926126 | MS.gene029882:intron | 55.0% | |
| !! | GGGATCGGTTCTGGGTTGAA+CGG | + | chr1.4:53921930-53921949 | None:intergenic | 55.0% |
| AAGAGGGGGGAAGGGTAGTG+AGG | + | chr1.4:53925914-53925933 | None:intergenic | 60.0% | |
| ACCACCTGTTGCTGAGGTGC+TGG | + | chr1.4:53926153-53926172 | None:intergenic | 60.0% | |
| AGAGGGGGGAAGGGTAGTGA+GGG | + | chr1.4:53925913-53925932 | None:intergenic | 60.0% | |
| CACTCCCAGTCCCCTGAAGA+TGG | + | chr1.4:53926115-53926134 | None:intergenic | 60.0% | |
| GTCTGCACCACCTGTTGCTG+AGG | + | chr1.4:53926159-53926178 | None:intergenic | 60.0% | |
| TGCCAGTTTGGCTGCCCAAC+AGG | - | chr1.4:53923787-53923806 | MS.gene029882:intron | 60.0% | |
| TGCCTGTTGGGCAGCCAAAC+TGG | + | chr1.4:53923792-53923811 | None:intergenic | 60.0% | |
| ! | CCACCTGTTGCTGAGGTGCT+GGG | + | chr1.4:53926152-53926171 | None:intergenic | 60.0% |
| CCCAGCACCTCAGCAACAGG+TGG | - | chr1.4:53926149-53926168 | MS.gene029882:CDS | 65.0% | |
| GGCTGCCCAACAGGCAGAGA+GGG | - | chr1.4:53923796-53923815 | MS.gene029882:intron | 65.0% | |
| GGGGAAGGGTAGTGAGGGAG+GGG | + | chr1.4:53925908-53925927 | None:intergenic | 65.0% | |
| GGGGGAAGGGTAGTGAGGGA+GGG | + | chr1.4:53925909-53925928 | None:intergenic | 65.0% | |
| GGTCCCAGCACCTCAGCAAC+AGG | - | chr1.4:53926146-53926165 | MS.gene029882:CDS | 65.0% | |
| TGGCTGCCCAACAGGCAGAG+AGG | - | chr1.4:53923795-53923814 | MS.gene029882:intron | 65.0% | |
| GGGGGGAAGGGTAGTGAGGG+AGG | + | chr1.4:53925910-53925929 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 53921800 | 53926301 | 53921800 | ID=MS.gene029882 |
| chr1.4 | mRNA | 53921800 | 53926301 | 53921800 | ID=MS.gene029882.t1;Parent=MS.gene029882 |
| chr1.4 | exon | 53926137 | 53926301 | 53926137 | ID=MS.gene029882.t1.exon1;Parent=MS.gene029882.t1 |
| chr1.4 | CDS | 53926137 | 53926301 | 53926137 | ID=cds.MS.gene029882.t1;Parent=MS.gene029882.t1 |
| chr1.4 | exon | 53925448 | 53925532 | 53925448 | ID=MS.gene029882.t1.exon2;Parent=MS.gene029882.t1 |
| chr1.4 | CDS | 53925448 | 53925532 | 53925448 | ID=cds.MS.gene029882.t1;Parent=MS.gene029882.t1 |
| chr1.4 | exon | 53925029 | 53925169 | 53925029 | ID=MS.gene029882.t1.exon3;Parent=MS.gene029882.t1 |
| chr1.4 | CDS | 53925029 | 53925169 | 53925029 | ID=cds.MS.gene029882.t1;Parent=MS.gene029882.t1 |
| chr1.4 | exon | 53924854 | 53924942 | 53924854 | ID=MS.gene029882.t1.exon4;Parent=MS.gene029882.t1 |
| chr1.4 | CDS | 53924854 | 53924942 | 53924854 | ID=cds.MS.gene029882.t1;Parent=MS.gene029882.t1 |
| chr1.4 | exon | 53924479 | 53924667 | 53924479 | ID=MS.gene029882.t1.exon5;Parent=MS.gene029882.t1 |
| chr1.4 | CDS | 53924479 | 53924667 | 53924479 | ID=cds.MS.gene029882.t1;Parent=MS.gene029882.t1 |
| chr1.4 | exon | 53924264 | 53924394 | 53924264 | ID=MS.gene029882.t1.exon6;Parent=MS.gene029882.t1 |
| chr1.4 | CDS | 53924264 | 53924394 | 53924264 | ID=cds.MS.gene029882.t1;Parent=MS.gene029882.t1 |
| chr1.4 | exon | 53923959 | 53924061 | 53923959 | ID=MS.gene029882.t1.exon7;Parent=MS.gene029882.t1 |
| chr1.4 | CDS | 53923959 | 53924061 | 53923959 | ID=cds.MS.gene029882.t1;Parent=MS.gene029882.t1 |
| chr1.4 | exon | 53921800 | 53921979 | 53921800 | ID=MS.gene029882.t1.exon8;Parent=MS.gene029882.t1 |
| chr1.4 | CDS | 53921800 | 53921979 | 53921800 | ID=cds.MS.gene029882.t1;Parent=MS.gene029882.t1 |
| Gene Sequence |
| Protein sequence |
