Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030050.t1 | XP_003617439.2 | 96 | 683 | 25 | 2 | 1 | 682 | 1 | 682 | 0.00E+00 | 1294.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030050.t1 | Q9SHY2 | 77.0 | 665 | 149 | 3 | 19 | 680 | 22 | 685 | 1.6e-304 | 1046.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030050.t1 | G7KD70 | 96.0 | 683 | 25 | 2 | 1 | 682 | 1 | 682 | 0.0e+00 | 1294.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene45566 | MS.gene030050 | PPI |
| MS.gene030050 | MS.gene37726 | PPI |
| MS.gene05216 | MS.gene030050 | PPI |
| MS.gene030050 | MS.gene57831 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030050.t1 | MTR_5g091600 | 96.047 | 683 | 25 | 2 | 1 | 682 | 1 | 682 | 0.0 | 1323 |
| MS.gene030050.t1 | MTR_3g063490 | 86.187 | 695 | 82 | 3 | 1 | 681 | 1 | 695 | 0.0 | 1190 |
| MS.gene030050.t1 | MTR_3g063520 | 87.826 | 690 | 76 | 2 | 1 | 682 | 1 | 690 | 0.0 | 1167 |
| MS.gene030050.t1 | MTR_6g077870 | 71.659 | 681 | 183 | 5 | 6 | 680 | 34 | 710 | 0.0 | 999 |
| MS.gene030050.t1 | MTR_6g077870 | 71.609 | 553 | 150 | 4 | 131 | 680 | 1 | 549 | 0.0 | 818 |
| MS.gene030050.t1 | MTR_7g028250 | 57.951 | 654 | 264 | 6 | 27 | 673 | 30 | 679 | 0.0 | 784 |
| MS.gene030050.t1 | MTR_3g092090 | 55.338 | 665 | 286 | 5 | 6 | 667 | 7 | 663 | 0.0 | 766 |
| MS.gene030050.t1 | MTR_3g092090 | 55.199 | 654 | 282 | 5 | 6 | 656 | 7 | 652 | 0.0 | 749 |
| MS.gene030050.t1 | MTR_1g007580 | 51.940 | 670 | 307 | 4 | 4 | 670 | 15 | 672 | 0.0 | 730 |
| MS.gene030050.t1 | MTR_0312s0020 | 51.560 | 673 | 319 | 3 | 1 | 670 | 4 | 672 | 0.0 | 729 |
| MS.gene030050.t1 | MTR_1g007540 | 51.560 | 673 | 319 | 3 | 1 | 670 | 4 | 672 | 0.0 | 729 |
| MS.gene030050.t1 | MTR_1g077840 | 51.502 | 666 | 311 | 6 | 8 | 669 | 22 | 679 | 0.0 | 715 |
| MS.gene030050.t1 | MTR_5g091615 | 92.453 | 159 | 12 | 0 | 519 | 677 | 59 | 217 | 2.07e-92 | 289 |
| MS.gene030050.t1 | MTR_5g091615 | 75.862 | 58 | 13 | 1 | 1 | 58 | 1 | 57 | 2.93e-19 | 89.4 |
| MS.gene030050.t1 | MTR_1626s0010 | 51.681 | 238 | 112 | 1 | 210 | 447 | 1 | 235 | 2.29e-82 | 260 |
| MS.gene030050.t1 | MTR_0312s0050 | 49.558 | 113 | 49 | 1 | 8 | 120 | 19 | 123 | 6.73e-33 | 123 |
| MS.gene030050.t1 | MTR_2g083230 | 86.957 | 46 | 6 | 0 | 122 | 167 | 34 | 79 | 2.68e-18 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030050.t1 | AT1G65730 | 75.145 | 688 | 162 | 5 | 1 | 681 | 1 | 686 | 0.0 | 1065 |
| MS.gene030050.t1 | AT3G17650 | 72.156 | 668 | 176 | 4 | 22 | 681 | 46 | 711 | 0.0 | 967 |
| MS.gene030050.t1 | AT3G17650 | 72.156 | 668 | 176 | 4 | 22 | 681 | 46 | 711 | 0.0 | 967 |
| MS.gene030050.t1 | AT1G48370 | 71.450 | 669 | 180 | 4 | 22 | 681 | 55 | 721 | 0.0 | 954 |
| MS.gene030050.t1 | AT3G27020 | 57.227 | 678 | 269 | 7 | 9 | 673 | 7 | 676 | 0.0 | 784 |
| MS.gene030050.t1 | AT1G48370 | 70.000 | 560 | 157 | 4 | 131 | 681 | 1 | 558 | 0.0 | 777 |
| MS.gene030050.t1 | AT5G53550 | 55.852 | 675 | 282 | 6 | 1 | 668 | 4 | 669 | 0.0 | 763 |
| MS.gene030050.t1 | AT5G53550 | 55.852 | 675 | 282 | 6 | 1 | 668 | 4 | 669 | 0.0 | 763 |
| MS.gene030050.t1 | AT5G53550 | 55.852 | 675 | 282 | 6 | 1 | 668 | 4 | 669 | 0.0 | 763 |
| MS.gene030050.t1 | AT5G53550 | 55.852 | 675 | 282 | 6 | 1 | 668 | 4 | 669 | 0.0 | 763 |
| MS.gene030050.t1 | AT5G53550 | 55.852 | 675 | 282 | 6 | 1 | 668 | 4 | 669 | 0.0 | 763 |
| MS.gene030050.t1 | AT5G41000 | 54.776 | 670 | 293 | 6 | 4 | 667 | 2 | 667 | 0.0 | 754 |
| MS.gene030050.t1 | AT5G24380 | 53.303 | 666 | 299 | 5 | 6 | 667 | 3 | 660 | 0.0 | 748 |
| MS.gene030050.t1 | AT4G24120 | 53.254 | 676 | 297 | 5 | 1 | 669 | 9 | 672 | 0.0 | 739 |
| MS.gene030050.t1 | AT5G41000 | 53.064 | 669 | 281 | 7 | 4 | 667 | 2 | 642 | 0.0 | 714 |
| MS.gene030050.t1 | AT5G53550 | 58.480 | 513 | 207 | 2 | 156 | 668 | 1 | 507 | 0.0 | 615 |
| MS.gene030050.t1 | AT5G41000 | 55.285 | 492 | 217 | 3 | 178 | 667 | 1 | 491 | 0.0 | 578 |
| MS.gene030050.t1 | AT5G45450 | 65.753 | 219 | 69 | 1 | 463 | 681 | 1 | 213 | 9.40e-97 | 297 |
Find 156 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTTGTTGTTAGCTTTCT+TGG | 0.055871 | 5.2:+77531078 | MS.gene030050:CDS |
| GTTCTTTGCATAACTCTTAA+AGG | 0.161384 | 5.2:+77532509 | MS.gene030050:CDS |
| GGTGATGGTCTATTCAATTT+TGG | 0.178911 | 5.2:+77532482 | MS.gene030050:CDS |
| GATGAGATTTCCACTGAAAA+AGG | 0.208952 | 5.2:+77529435 | MS.gene030050:CDS |
| TGATTTGCGGAGATGGAATT+TGG | 0.227884 | 5.2:+77533422 | MS.gene030050:CDS |
| GAAGCTTGATATTGTTTATT+TGG | 0.238786 | 5.2:+77533344 | MS.gene030050:CDS |
| TACATGGTCTTCAAGGTTAC+AGG | 0.266757 | 5.2:+77532153 | MS.gene030050:CDS |
| ATGTTTGTGAGCCAAGTTAT+TGG | 0.272519 | 5.2:+77533001 | MS.gene030050:CDS |
| TTTGGAGCAGCTGTTGCTTC+TGG | 0.279659 | 5.2:+77533397 | MS.gene030050:CDS |
| TACTTGCTTCTTTGCTAGTT+TGG | 0.284398 | 5.2:-77531598 | None:intergenic |
| CCGAACAATATTAATAATTA+TGG | 0.291212 | 5.2:-77533221 | None:intergenic |
| TATTCCTTCTTTGAATGTTT+CGG | 0.296053 | 5.2:+77529581 | MS.gene030050:CDS |
| AGCGAAATATTGGTTATATA+TGG | 0.303147 | 5.2:-77532035 | None:intergenic |
| TCATTGGCAGTGCCAGCTTC+TGG | 0.308809 | 5.2:-77531018 | None:intergenic |
| GACACCACATGCTGCTAAAC+TGG | 0.314803 | 5.2:-77532897 | None:intergenic |
| ACCAATCAACAGCGAAATAT+TGG | 0.316315 | 5.2:-77532045 | None:intergenic |
| TTTACAAACTTTCCCACATT+TGG | 0.322898 | 5.2:+77531702 | MS.gene030050:CDS |
| GTATTCTCCTGTCTGGTAAA+AGG | 0.329015 | 5.2:-77529675 | None:intergenic |
| AATGTTTCGGCTGGGTTGCT+AGG | 0.332849 | 5.2:+77529594 | MS.gene030050:CDS |
| TTATTTGGCAGAAGCTTGAT+AGG | 0.342034 | 5.2:+77533359 | MS.gene030050:CDS |
| ACCAATATTTCGCTGTTGAT+TGG | 0.354272 | 5.2:+77532044 | MS.gene030050:CDS |
| AAGTAGCTTCCAATGTAAAA+TGG | 0.358086 | 5.2:-77533301 | None:intergenic |
| TCACGTCGTCGATGAGGTTC+TGG | 0.358748 | 5.2:-77529387 | None:intergenic |
| ATAGGCATAGCAATGATTCT+TGG | 0.363000 | 5.2:+77532461 | MS.gene030050:CDS |
| TGGTTATTCTACCATGCATT+TGG | 0.366728 | 5.2:+77533061 | MS.gene030050:CDS |
| CTTCTCCTTTAGCTTCTTGT+GGG | 0.366991 | 5.2:+77531638 | MS.gene030050:CDS |
| AGGGCCAAGGCTGATGCATT+TGG | 0.370325 | 5.2:+77533379 | MS.gene030050:CDS |
| GGGTTTGGTAGCTACTTGTT+TGG | 0.371080 | 5.2:+77530967 | MS.gene030050:CDS |
| GGCAGAAACAGGTTACTGTT+AGG | 0.378300 | 5.2:+77529484 | MS.gene030050:CDS |
| CCTTCTTTGAATGTTTCGGC+TGG | 0.378910 | 5.2:+77529585 | MS.gene030050:CDS |
| TGATTGGTGGAGTTCTTTCA+TGG | 0.381134 | 5.2:+77532060 | MS.gene030050:CDS |
| TACCATGCATTTGGTACTCT+TGG | 0.383561 | 5.2:+77533070 | MS.gene030050:CDS |
| AAGGAAAATCGGTTCCTTCA+TGG | 0.390439 | 5.2:+77529463 | MS.gene030050:CDS |
| TGGCTCACAAACATGGATTT+CGG | 0.390640 | 5.2:-77532992 | None:intergenic |
| GCCAATGATGTTAAGAGTCT+TGG | 0.398551 | 5.2:+77531033 | MS.gene030050:CDS |
| CTGCTTTCTTTGAGATCAGC+AGG | 0.407509 | 5.2:-77532128 | None:intergenic |
| TCTTGTGGGGTTTCTTCCAA+TGG | 0.410444 | 5.2:+77531652 | MS.gene030050:CDS |
| TTCAGTGGTTCCACTTAGAA+AGG | 0.412142 | 5.2:+77531107 | MS.gene030050:CDS |
| GATGTTAAGAGTCTTGGTTT+AGG | 0.418370 | 5.2:+77531039 | MS.gene030050:CDS |
| GGTTCCTTCATGGCAGAAAC+AGG | 0.418491 | 5.2:+77529473 | MS.gene030050:CDS |
| GATTGGTGGAGTTCTTTCAT+GGG | 0.427764 | 5.2:+77532061 | MS.gene030050:CDS |
| GACAAGAATTTCATGCAAAT+AGG | 0.427809 | 5.2:-77533487 | None:intergenic |
| AGTCACTTACTTCCTTTGAT+AGG | 0.427904 | 5.2:-77531733 | None:intergenic |
| CCATAATTATTAATATTGTT+CGG | 0.429626 | 5.2:+77533221 | MS.gene030050:CDS |
| GTAGGTGGGAGAGGAGCATT+TGG | 0.431255 | 5.2:-77532581 | None:intergenic |
| GTTGCTTCTGGTTTGATTTG+CGG | 0.432992 | 5.2:+77533409 | MS.gene030050:CDS |
| GCAGCTAATGCTAAGGTTGA+TGG | 0.437579 | 5.2:+77533514 | MS.gene030050:CDS |
| TTTACTTGTGTAGGTGGGTT+TGG | 0.439530 | 5.2:+77530952 | MS.gene030050:intron |
| TCTTCTCCTTTAGCTTCTTG+TGG | 0.441527 | 5.2:+77531637 | MS.gene030050:CDS |
| AAAAGGGTTTGAAGGAAAAT+CGG | 0.442446 | 5.2:+77529452 | MS.gene030050:CDS |
| ACCAAGACTCTTAACATCAT+TGG | 0.446254 | 5.2:-77531034 | None:intergenic |
| CGATAGCAGTTCCAATAACT+TGG | 0.447827 | 5.2:-77533012 | None:intergenic |
| TTCACTGCTGGTGATGCTTG+TGG | 0.449951 | 5.2:+77531678 | MS.gene030050:CDS |
| CTCATGCAAGACTTCAAAAC+AGG | 0.450675 | 5.2:+77532950 | MS.gene030050:CDS |
| TGCTCCAAATGCATCAGCCT+TGG | 0.453111 | 5.2:-77533383 | None:intergenic |
| TATCGAAACATGGCAATACT+AGG | 0.453894 | 5.2:+77533133 | MS.gene030050:CDS |
| TTCACTATCGGTGCTTGGAC+AGG | 0.455104 | 5.2:+77532854 | MS.gene030050:CDS |
| GGTGTCATGTGGCCTCTCAT+TGG | 0.456041 | 5.2:+77532083 | MS.gene030050:CDS |
| TTAAGAGTCTTGGTTTAGGA+TGG | 0.456468 | 5.2:+77531043 | MS.gene030050:CDS |
| TCTGGTTTGATTTGCGGAGA+TGG | 0.456514 | 5.2:+77533415 | MS.gene030050:CDS |
| CAAGTATATTCCTGTTCCTA+TGG | 0.457463 | 5.2:+77533267 | MS.gene030050:CDS |
| CTCAAAGAAAGCAGCTTACA+TGG | 0.464152 | 5.2:+77532137 | MS.gene030050:CDS |
| AGCAGCTTACATGGTCTTCA+AGG | 0.465668 | 5.2:+77532146 | MS.gene030050:CDS |
| TTTGGTACTCTTGGTCAACC+TGG | 0.466335 | 5.2:+77533079 | MS.gene030050:CDS |
| ACCAGCTTTCTCAAGCAACT+TGG | 0.467323 | 5.2:-77529640 | None:intergenic |
| AGGAGGGGATTTGATCTTTG+AGG | 0.467620 | 5.2:-77532640 | None:intergenic |
| CAAGTTATTGGAACTGCTAT+CGG | 0.474537 | 5.2:+77533013 | MS.gene030050:CDS |
| ATGAAGCTGAATCTCACTAC+TGG | 0.474985 | 5.2:+77529555 | MS.gene030050:CDS |
| ATCGCCATAGCCATAGGAAC+AGG | 0.477409 | 5.2:-77533277 | None:intergenic |
| TTTCGATAAACGAGTGCATA+AGG | 0.482550 | 5.2:-77533118 | None:intergenic |
| AATAACAGTATTCTCCTGTC+TGG | 0.483024 | 5.2:-77529682 | None:intergenic |
| CCATCTTCACTATCGGTGCT+TGG | 0.483234 | 5.2:+77532849 | MS.gene030050:CDS |
| CTTCTTTGAATGTTTCGGCT+GGG | 0.483708 | 5.2:+77529586 | MS.gene030050:CDS |
| CCCTCCTGGTTTGCTATCGC+AGG | 0.488906 | 5.2:+77532656 | MS.gene030050:CDS |
| ACTTGTGTTGTTGCTGCTAG+TGG | 0.489925 | 5.2:+77529708 | MS.gene030050:CDS |
| AGTTAGTGTACCTTTCTAAG+TGG | 0.497051 | 5.2:-77531117 | None:intergenic |
| AATATTGTTCGGTACTTCGT+TGG | 0.499440 | 5.2:+77533232 | MS.gene030050:CDS |
| GCAGAAACAGGTTACTGTTA+GGG | 0.499595 | 5.2:+77529485 | MS.gene030050:CDS |
| AATATTTCGCTGTTGATTGG+TGG | 0.504823 | 5.2:+77532047 | MS.gene030050:CDS |
| TAAACGAGTGCATAAGGTGC+AGG | 0.507587 | 5.2:-77533112 | None:intergenic |
| TTTGCTATTGATATGTGTGT+TGG | 0.507636 | 5.2:+77533322 | MS.gene030050:CDS |
| TTCTTTCATGGGGTGTCATG+TGG | 0.512338 | 5.2:+77532072 | MS.gene030050:CDS |
| ACTTTAGCTGGTGGAAAATG+TGG | 0.515525 | 5.2:-77532718 | None:intergenic |
| ATGTTTCGGCTGGGTTGCTA+GGG | 0.517641 | 5.2:+77529595 | MS.gene030050:CDS |
| TCAAAGATCAAATCCCCTCC+TGG | 0.519522 | 5.2:+77532642 | MS.gene030050:CDS |
| CATAGGAACAGGAATATACT+TGG | 0.521944 | 5.2:-77533266 | None:intergenic |
| ATAGCCTGCGATAGCAAACC+AGG | 0.526898 | 5.2:-77532660 | None:intergenic |
| GCAAAACAAATTCCAGAAGC+TGG | 0.528010 | 5.2:+77531006 | MS.gene030050:CDS |
| AATAACTTGGCTCACAAACA+TGG | 0.530485 | 5.2:-77532999 | None:intergenic |
| ATAGGCTTCTAGACCAAATG+TGG | 0.534074 | 5.2:-77531715 | None:intergenic |
| AAAGAAGCAAGTAAAAGCAC+TGG | 0.538820 | 5.2:+77531608 | MS.gene030050:CDS |
| CCAAGCACCGATAGTGAAGA+TGG | 0.542033 | 5.2:-77532849 | None:intergenic |
| ATTCAGCTTCATCACAATGA+AGG | 0.542122 | 5.2:-77529544 | None:intergenic |
| AATGAAAGTGTAGGTGGGAG+AGG | 0.542352 | 5.2:-77532590 | None:intergenic |
| ACCAAGTTGCTTGAGAAAGC+TGG | 0.544740 | 5.2:+77529639 | MS.gene030050:CDS |
| TATTCCTGTTCCTATGGCTA+TGG | 0.547446 | 5.2:+77533273 | MS.gene030050:CDS |
| GTAACCTGTTTCTGCCATGA+AGG | 0.548353 | 5.2:-77529477 | None:intergenic |
| TGATGTGATACCACTTTAGC+TGG | 0.550885 | 5.2:-77532730 | None:intergenic |
| GGTTCTTCTTTGTCAAGACA+TGG | 0.550891 | 5.2:+77529616 | MS.gene030050:CDS |
| ATGGCTGTGGACTAACAGAT+TGG | 0.552312 | 5.2:+77532798 | MS.gene030050:CDS |
| CTTTAGCTGGTGGAAAATGT+GGG | 0.554313 | 5.2:-77532717 | None:intergenic |
| GAAACCCCACAAGAAGCTAA+AGG | 0.558484 | 5.2:-77531643 | None:intergenic |
| TGAGCTGTTGCAGTACCACT+TGG | 0.560291 | 5.2:-77531543 | None:intergenic |
| ATGGCAATACTAGGTGTGGA+TGG | 0.562386 | 5.2:+77533142 | MS.gene030050:CDS |
| TGGTCCCTTGCATCGACCTA+CGG | 0.564629 | 5.2:+77532818 | MS.gene030050:CDS |
| ACAGCCATAGGCATTGCAAA+AGG | 0.566094 | 5.2:-77532783 | None:intergenic |
| TATTTGGCAGAAGCTTGATA+GGG | 0.566643 | 5.2:+77533360 | MS.gene030050:CDS |
| AATCTCATCGAGTTGTTCAT+CGG | 0.567170 | 5.2:-77529421 | None:intergenic |
| AGACAAAGTAGCACAGTCTG+AGG | 0.568806 | 5.2:+77532556 | MS.gene030050:CDS |
| GTCTAGAGCAGCTAATGCTA+AGG | 0.570538 | 5.2:+77533507 | MS.gene030050:CDS |
| AATGGTATCGCCATAGCCAT+AGG | 0.572462 | 5.2:-77533283 | None:intergenic |
| GCATTGCAAAAGGCTAGTGC+GGG | 0.573429 | 5.2:-77532773 | None:intergenic |
| AAATTAGCCATCTTCACTAT+CGG | 0.574958 | 5.2:+77532842 | MS.gene030050:CDS |
| GCAAGAGCAAGAAAAGAGCT+AGG | 0.577753 | 5.2:-77533451 | None:intergenic |
| CTCATCGAGTTGTTCATCGG+AGG | 0.577930 | 5.2:-77529418 | None:intergenic |
| GGCATTGCAAAAGGCTAGTG+CGG | 0.578668 | 5.2:-77532774 | None:intergenic |
| GCAGAAGCTTGATAGGGCCA+AGG | 0.581499 | 5.2:+77533366 | MS.gene030050:CDS |
| TCATCGAATGAAAGTGTAGG+TGG | 0.582413 | 5.2:-77532596 | None:intergenic |
| ATCTGTTAGTCCACAGCCAT+AGG | 0.582868 | 5.2:-77532795 | None:intergenic |
| CAAAACAGGTTACATGACAC+TGG | 0.583625 | 5.2:+77532964 | MS.gene030050:CDS |
| TCAACGTCACGTCGTCGATG+AGG | 0.588481 | 5.2:-77529393 | None:intergenic |
| AAACATGGCAATACTAGGTG+TGG | 0.591588 | 5.2:+77533138 | MS.gene030050:CDS |
| AAGAATTTCATGCAAATAGG+TGG | 0.591699 | 5.2:-77533484 | None:intergenic |
| CCAGCCGAAACATTCAAAGA+AGG | 0.594215 | 5.2:-77529585 | None:intergenic |
| TGCACTCGTTTATCGAAACA+TGG | 0.595881 | 5.2:+77533123 | MS.gene030050:CDS |
| TTCTCCTTTAGCTTCTTGTG+GGG | 0.598215 | 5.2:+77531639 | MS.gene030050:CDS |
| ATAGCAATGATTCTTGGTGA+TGG | 0.599500 | 5.2:+77532467 | MS.gene030050:CDS |
| TGCTTTCTTTGAGATCAGCA+GGG | 0.603921 | 5.2:-77532127 | None:intergenic |
| ATTCGATGACAAGCGCAGAA+CGG | 0.605807 | 5.2:+77532610 | MS.gene030050:CDS |
| GGTGCAGGGTATGCTGAACC+AGG | 0.606714 | 5.2:-77533097 | None:intergenic |
| TTGGTCTAGAAGCCTATCAA+AGG | 0.609519 | 5.2:+77531721 | MS.gene030050:CDS |
| GACCAAGAGTACCAAATGCA+TGG | 0.613241 | 5.2:-77533072 | None:intergenic |
| ATTGGTGGAGTTCTTTCATG+GGG | 0.613889 | 5.2:+77532062 | MS.gene030050:CDS |
| AGTTGCTTGAGAAAGCTGGT+TGG | 0.620575 | 5.2:+77529643 | MS.gene030050:CDS |
| CACATGCTGCTAAACTGGCT+AGG | 0.627857 | 5.2:-77532892 | None:intergenic |
| TGAAGCTGAATCTCACTACT+GGG | 0.630097 | 5.2:+77529556 | MS.gene030050:CDS |
| CTGCGATAGCAAACCAGGAG+GGG | 0.633433 | 5.2:-77532655 | None:intergenic |
| GGTGCTTGGACAGGAGCCAA+CGG | 0.634839 | 5.2:+77532863 | MS.gene030050:CDS |
| ACATGGTCTTCAAGGTTACA+GGG | 0.635841 | 5.2:+77532154 | MS.gene030050:CDS |
| AAGAAGCAAGTAAAAGCACT+GGG | 0.641434 | 5.2:+77531609 | MS.gene030050:CDS |
| TTTAGCTGGTGGAAAATGTG+GGG | 0.643964 | 5.2:-77532716 | None:intergenic |
| AAACGAGTGCATAAGGTGCA+GGG | 0.645258 | 5.2:-77533111 | None:intergenic |
| TTGTCATCGAATGAAAGTGT+AGG | 0.645823 | 5.2:-77532599 | None:intergenic |
| CATCGAATGAAAGTGTAGGT+GGG | 0.652819 | 5.2:-77532595 | None:intergenic |
| CCTGCGATAGCAAACCAGGA+GGG | 0.658243 | 5.2:-77532656 | None:intergenic |
| AAAATATGCTGCAAAGTACG+AGG | 0.669730 | 5.2:-77533189 | None:intergenic |
| CTAGCCAGTTTAGCAGCATG+TGG | 0.673936 | 5.2:+77532893 | MS.gene030050:CDS |
| TAGGCTTCTAGACCAAATGT+GGG | 0.679352 | 5.2:-77531714 | None:intergenic |
| TTAGCTGGTGGAAAATGTGG+GGG | 0.686845 | 5.2:-77532715 | None:intergenic |
| ACTGGCTAGGATACCGCCGT+TGG | 0.687737 | 5.2:-77532879 | None:intergenic |
| TAGAATAACCAGAAAACACA+AGG | 0.690587 | 5.2:-77533049 | None:intergenic |
| TGTGATACCACTTTAGCTGG+TGG | 0.692393 | 5.2:-77532727 | None:intergenic |
| TTCAGATTGACATATCCAAG+TGG | 0.693932 | 5.2:+77531528 | MS.gene030050:CDS |
| GCTAGTGGAATTGCATTCAG+CGG | 0.695424 | 5.2:+77529723 | MS.gene030050:CDS |
| GCCTGCGATAGCAAACCAGG+AGG | 0.703548 | 5.2:-77532657 | None:intergenic |
| GCTTGGACAGGAGCCAACGG+CGG | 0.709931 | 5.2:+77532866 | MS.gene030050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATTCAAATAAATAAAA+AGG | - | chr5.2:77531248-77531267 | None:intergenic | 10.0% |
| !! | TAAATGTTAAATAAAAGAAA+AGG | - | chr5.2:77531943-77531962 | None:intergenic | 10.0% |
| !!! | TATTTATTTGAATTTTGTAT+TGG | + | chr5.2:77531251-77531270 | MS.gene030050:intron | 10.0% |
| !! | ATTAAAAAAGGATTTAACAA+AGG | + | chr5.2:77531780-77531799 | MS.gene030050:intron | 15.0% |
| !! | CCATAATTATTAATATTGTT+CGG | + | chr5.2:77533221-77533240 | MS.gene030050:CDS | 15.0% |
| !! | TATTTATTTATGTACATAAC+AGG | + | chr5.2:77531964-77531983 | MS.gene030050:intron | 15.0% |
| !! | TTCCATCATTAATAAAATAT+AGG | - | chr5.2:77531761-77531780 | None:intergenic | 15.0% |
| !! | TTTAACACAAAACATAAAAA+GGG | - | chr5.2:77529769-77529788 | None:intergenic | 15.0% |
| !!! | AGTATATTTTGAAATTGATA+TGG | + | chr5.2:77532262-77532281 | MS.gene030050:intron | 15.0% |
| !!! | ATTAATGATGGAATTAAAAA+AGG | + | chr5.2:77531768-77531787 | MS.gene030050:intron | 15.0% |
| !!! | TGAATCAATTTTTAAAACAT+GGG | + | chr5.2:77531452-77531471 | MS.gene030050:intron | 15.0% |
| !!! | TTGAATCAATTTTTAAAACA+TGG | + | chr5.2:77531451-77531470 | MS.gene030050:intron | 15.0% |
| !! | ATTAGAAATTTAAACATGAC+AGG | + | chr5.2:77530609-77530628 | MS.gene030050:intron | 20.0% |
| !! | ATTTGTGATTTGAATTGAAT+TGG | + | chr5.2:77529808-77529827 | MS.gene030050:intron | 20.0% |
| !! | CCGAACAATATTAATAATTA+TGG | - | chr5.2:77533224-77533243 | None:intergenic | 20.0% |
| !! | CTTTAACACAAAACATAAAA+AGG | - | chr5.2:77529770-77529789 | None:intergenic | 20.0% |
| !! | TCAAAATATACTTACAAAAG+TGG | - | chr5.2:77532254-77532273 | None:intergenic | 20.0% |
| !! | TTTGTGATTTGAATTGAATT+GGG | + | chr5.2:77529809-77529828 | MS.gene030050:intron | 20.0% |
| !!! | ATTGTATTCTTTTAAACTAC+AGG | + | chr5.2:77532433-77532452 | MS.gene030050:intron | 20.0% |
| !!! | ATTTTAAAAATTGAGTCAGA+TGG | + | chr5.2:77531317-77531336 | MS.gene030050:intron | 20.0% |
| !!! | TAATCAAACAATGTATTGAT+AGG | + | chr5.2:77531152-77531171 | MS.gene030050:intron | 20.0% |
| ! | CAACGTAAAACATAGTTAAT+TGG | + | chr5.2:77532311-77532330 | MS.gene030050:intron | 25.0% |
| ! | GAAAAATAGTAGTTTCTCAT+TGG | + | chr5.2:77532284-77532303 | MS.gene030050:intron | 25.0% |
| ! | GAAGCTTGATATTGTTTATT+TGG | + | chr5.2:77533344-77533363 | MS.gene030050:CDS | 25.0% |
| ! | GATTATGATAGCTTAAGAAA+AGG | - | chr5.2:77530575-77530594 | None:intergenic | 25.0% |
| ! | TAAAACAATTGAACATGACT+TGG | + | chr5.2:77531410-77531429 | MS.gene030050:intron | 25.0% |
| ! | TATCAATAGATCTTAACTGA+AGG | + | chr5.2:77530530-77530549 | MS.gene030050:intron | 25.0% |
| ! | TATTCCTTCTTTGAATGTTT+CGG | + | chr5.2:77529581-77529600 | MS.gene030050:CDS | 25.0% |
| ! | TTAGGAGTCAACTTATTTAA+AGG | + | chr5.2:77530040-77530059 | MS.gene030050:intron | 25.0% |
| ! | TTGTGATTTGAATTGAATTG+GGG | + | chr5.2:77529810-77529829 | MS.gene030050:intron | 25.0% |
| !! | AGCGAAATATTGGTTATATA+TGG | - | chr5.2:77532038-77532057 | None:intergenic | 25.0% |
| !! | CGCCTATATTTTATTAATGA+TGG | + | chr5.2:77531756-77531775 | MS.gene030050:intron | 25.0% |
| !! | TTTAAACTACAGGTTTTCAT+AGG | + | chr5.2:77532443-77532462 | MS.gene030050:intron | 25.0% |
| !!! | AGTTAATTTTGAAGCATGAT+TGG | + | chr5.2:77530066-77530085 | MS.gene030050:intron | 25.0% |
| !!! | ATTTTAAGGTATGACAAAGT+CGG | - | chr5.2:77531199-77531218 | None:intergenic | 25.0% |
| !!! | TGTTTTAAATTGATTGAACC+AGG | - | chr5.2:77531397-77531416 | None:intergenic | 25.0% |
| AAAAGGGTTTGAAGGAAAAT+CGG | + | chr5.2:77529452-77529471 | MS.gene030050:CDS | 30.0% | |
| AAATTAGCCATCTTCACTAT+CGG | + | chr5.2:77532842-77532861 | MS.gene030050:CDS | 30.0% | |
| AACCTCTATGTTCTCAATTA+TGG | + | chr5.2:77531844-77531863 | MS.gene030050:intron | 30.0% | |
| AAGAATTTCATGCAAATAGG+TGG | - | chr5.2:77533487-77533506 | None:intergenic | 30.0% | |
| AAGTAGCTTCCAATGTAAAA+TGG | - | chr5.2:77533304-77533323 | None:intergenic | 30.0% | |
| AATTGAGAACATAGAGGTTT+CGG | - | chr5.2:77531843-77531862 | None:intergenic | 30.0% | |
| ACAAGTACAAAACTGGAATT+TGG | + | chr5.2:77532340-77532359 | MS.gene030050:intron | 30.0% | |
| AGCAAAACATTTCTCAAGAA+GGG | - | chr5.2:77530723-77530742 | None:intergenic | 30.0% | |
| ATGAGATTTCCACTGAAAAA+GGG | + | chr5.2:77529436-77529455 | MS.gene030050:CDS | 30.0% | |
| CAGAGTTCAATTAGAAATTG+AGG | - | chr5.2:77530847-77530866 | None:intergenic | 30.0% | |
| GACAAGAATTTCATGCAAAT+AGG | - | chr5.2:77533490-77533509 | None:intergenic | 30.0% | |
| GATTGAAACAAGTACAAAAC+TGG | + | chr5.2:77532333-77532352 | MS.gene030050:intron | 30.0% | |
| GATTTAACAAAGGATGCATT+TGG | + | chr5.2:77531790-77531809 | MS.gene030050:intron | 30.0% | |
| GCAATTACTTCAATTCAATG+TGG | + | chr5.2:77530799-77530818 | MS.gene030050:intron | 30.0% | |
| GTTAGTAATACGATAGAGTT+TGG | + | chr5.2:77530657-77530676 | MS.gene030050:intron | 30.0% | |
| GTTCTTTGCATAACTCTTAA+AGG | + | chr5.2:77532509-77532528 | MS.gene030050:CDS | 30.0% | |
| TAGAATAACCAGAAAACACA+AGG | - | chr5.2:77533052-77533071 | None:intergenic | 30.0% | |
| TAGCAAAACATTTCTCAAGA+AGG | - | chr5.2:77530724-77530743 | None:intergenic | 30.0% | |
| TTTACAAACTTTCCCACATT+TGG | + | chr5.2:77531702-77531721 | MS.gene030050:CDS | 30.0% | |
| TTTCTAATTGAACTCTGAGT+TGG | + | chr5.2:77530850-77530869 | MS.gene030050:intron | 30.0% | |
| TTTCTTGGTTAGTGTATCAT+CGG | + | chr5.2:77529901-77529920 | MS.gene030050:intron | 30.0% | |
| ! | AAAATCTTGTGCTTTTGTGT+TGG | + | chr5.2:77529951-77529970 | MS.gene030050:intron | 30.0% |
| ! | AACAGTTTTCATACATCAGA+AGG | + | chr5.2:77531573-77531592 | MS.gene030050:CDS | 30.0% |
| !! | CTATTTGTTGTTAGCTTTCT+TGG | + | chr5.2:77531078-77531097 | MS.gene030050:CDS | 30.0% |
| !! | TGGTTGGTAATGTATTCTTT+AGG | + | chr5.2:77532400-77532419 | MS.gene030050:intron | 30.0% |
| !! | TTTGCTATTGATATGTGTGT+TGG | + | chr5.2:77533322-77533341 | MS.gene030050:CDS | 30.0% |
| !!! | GGAATTTGTTTTGCAATAGT+TGG | - | chr5.2:77531000-77531019 | None:intergenic | 30.0% |
| AAAAAGGCCCATATTTGTAG+TGG | - | chr5.2:77531232-77531251 | None:intergenic | 35.0% | |
| AAAATATGCTGCAAAGTACG+AGG | - | chr5.2:77533192-77533211 | None:intergenic | 35.0% | |
| AAAATTATGAAAGTCCGCTG+AGG | - | chr5.2:77530773-77530792 | None:intergenic | 35.0% | |
| AATAACAGTATTCTCCTGTC+TGG | - | chr5.2:77529685-77529704 | None:intergenic | 35.0% | |
| AATAACTTGGCTCACAAACA+TGG | - | chr5.2:77533002-77533021 | None:intergenic | 35.0% | |
| AATATTGTTCGGTACTTCGT+TGG | + | chr5.2:77533232-77533251 | MS.gene030050:CDS | 35.0% | |
| AATCAAACTGTAGACATTGC+TGG | - | chr5.2:77531364-77531383 | None:intergenic | 35.0% | |
| AATTCAATGTGGATTCTCAG+TGG | + | chr5.2:77530810-77530829 | MS.gene030050:intron | 35.0% | |
| ACCAAGACTCTTAACATCAT+TGG | - | chr5.2:77531037-77531056 | None:intergenic | 35.0% | |
| ACCAATATTTCGCTGTTGAT+TGG | + | chr5.2:77532044-77532063 | MS.gene030050:CDS | 35.0% | |
| ACCAATCAACAGCGAAATAT+TGG | - | chr5.2:77532048-77532067 | None:intergenic | 35.0% | |
| AGTCACTTACTTCCTTTGAT+AGG | - | chr5.2:77531736-77531755 | None:intergenic | 35.0% | |
| AGTTAGTGTACCTTTCTAAG+TGG | - | chr5.2:77531120-77531139 | None:intergenic | 35.0% | |
| ATAGCAATGATTCTTGGTGA+TGG | + | chr5.2:77532467-77532486 | MS.gene030050:CDS | 35.0% | |
| ATAGGCATAGCAATGATTCT+TGG | + | chr5.2:77532461-77532480 | MS.gene030050:CDS | 35.0% | |
| ATGTTTGTGAGCCAAGTTAT+TGG | + | chr5.2:77533001-77533020 | MS.gene030050:CDS | 35.0% | |
| ATTCAGCTTCATCACAATGA+AGG | - | chr5.2:77529547-77529566 | None:intergenic | 35.0% | |
| CAAGTATATTCCTGTTCCTA+TGG | + | chr5.2:77533267-77533286 | MS.gene030050:CDS | 35.0% | |
| CAAGTTATTGGAACTGCTAT+CGG | + | chr5.2:77533013-77533032 | MS.gene030050:CDS | 35.0% | |
| CAATGTCTACAGTTTGATTG+CGG | + | chr5.2:77531365-77531384 | MS.gene030050:intron | 35.0% | |
| CACCATAATTGAGAACATAG+AGG | - | chr5.2:77531849-77531868 | None:intergenic | 35.0% | |
| CATAGGAACAGGAATATACT+TGG | - | chr5.2:77533269-77533288 | None:intergenic | 35.0% | |
| GATGAGATTTCCACTGAAAA+AGG | + | chr5.2:77529435-77529454 | MS.gene030050:CDS | 35.0% | |
| GATGGCTTCTTAGAATCTTA+AGG | + | chr5.2:77533532-77533551 | MS.gene030050:CDS | 35.0% | |
| GATGTTAAGAGTCTTGGTTT+AGG | + | chr5.2:77531039-77531058 | MS.gene030050:CDS | 35.0% | |
| TACTTGCTTCTTTGCTAGTT+TGG | - | chr5.2:77531601-77531620 | None:intergenic | 35.0% | |
| TATCGAAACATGGCAATACT+AGG | + | chr5.2:77533133-77533152 | MS.gene030050:CDS | 35.0% | |
| TGAATTGAATTGGGGTTACT+GGG | + | chr5.2:77529818-77529837 | MS.gene030050:intron | 35.0% | |
| TGGTTATTCTACCATGCATT+TGG | + | chr5.2:77533061-77533080 | MS.gene030050:CDS | 35.0% | |
| TTAAGAGTCTTGGTTTAGGA+TGG | + | chr5.2:77531043-77531062 | MS.gene030050:CDS | 35.0% | |
| TTCACATGGTTTACTTGTGT+AGG | + | chr5.2:77530943-77530962 | MS.gene030050:intron | 35.0% | |
| TTCAGATTGACATATCCAAG+TGG | + | chr5.2:77531528-77531547 | MS.gene030050:CDS | 35.0% | |
| TTCTTGGTTAGTGTATCATC+GGG | + | chr5.2:77529902-77529921 | MS.gene030050:intron | 35.0% | |
| TTGAATTGAATTGGGGTTAC+TGG | + | chr5.2:77529817-77529836 | MS.gene030050:intron | 35.0% | |
| TTGCTGACAAATCTTTCACA+TGG | + | chr5.2:77530929-77530948 | MS.gene030050:intron | 35.0% | |
| TTGTGATTCCTATTGACAGT+GGG | - | chr5.2:77529933-77529952 | None:intergenic | 35.0% | |
| TTTCGATAAACGAGTGCATA+AGG | - | chr5.2:77533121-77533140 | None:intergenic | 35.0% | |
| TTTGTGATTCCTATTGACAG+TGG | - | chr5.2:77529934-77529953 | None:intergenic | 35.0% | |
| ! | AAAGAAGCAAGTAAAAGCAC+TGG | + | chr5.2:77531608-77531627 | MS.gene030050:CDS | 35.0% |
| ! | AATATTTCGCTGTTGATTGG+TGG | + | chr5.2:77532047-77532066 | MS.gene030050:CDS | 35.0% |
| ! | AATCTCATCGAGTTGTTCAT+CGG | - | chr5.2:77529424-77529443 | None:intergenic | 35.0% |
| ! | ATGGCGATACCATTTTACAT+TGG | + | chr5.2:77533292-77533311 | MS.gene030050:CDS | 35.0% |
| ! | ATTTTTCTGCTACCTATGTG+GGG | + | chr5.2:77531997-77532016 | MS.gene030050:CDS | 35.0% |
| ! | GATTTTTCTGCTACCTATGT+GGG | + | chr5.2:77531996-77532015 | MS.gene030050:CDS | 35.0% |
| ! | TAATCAACCTTTTACCAGAC+AGG | + | chr5.2:77529668-77529687 | MS.gene030050:CDS | 35.0% |
| ! | TGATTTTTCTGCTACCTATG+TGG | + | chr5.2:77531995-77532014 | MS.gene030050:CDS | 35.0% |
| ! | TTGCTTTGCATGTGTTTTCT+TGG | + | chr5.2:77529886-77529905 | MS.gene030050:intron | 35.0% |
| ! | TTGTCATCGAATGAAAGTGT+AGG | - | chr5.2:77532602-77532621 | None:intergenic | 35.0% |
| ! | TTTTCAACCAGCAACAGAAA+GGG | - | chr5.2:77529988-77530007 | None:intergenic | 35.0% |
| !! | AAGAAGCAAGTAAAAGCACT+GGG | + | chr5.2:77531609-77531628 | MS.gene030050:CDS | 35.0% |
| !! | GGTGATGGTCTATTCAATTT+TGG | + | chr5.2:77532482-77532501 | MS.gene030050:CDS | 35.0% |
| !!! | GATATGGGTTTCTGGTTTTT+TGG | + | chr5.2:77529843-77529862 | MS.gene030050:intron | 35.0% |
| !!! | TAGATCTTTTTCGATGTGAC+TGG | + | chr5.2:77532380-77532399 | MS.gene030050:intron | 35.0% |
| AAACATGGCAATACTAGGTG+TGG | + | chr5.2:77533138-77533157 | MS.gene030050:CDS | 40.0% | |
| AACCTGCACCACTACAAATA+TGG | + | chr5.2:77531221-77531240 | MS.gene030050:intron | 40.0% | |
| ACATGGTCTTCAAGGTTACA+GGG | + | chr5.2:77532154-77532173 | MS.gene030050:CDS | 40.0% | |
| ACATGGTTTACTTGTGTAGG+TGG | + | chr5.2:77530946-77530965 | MS.gene030050:intron | 40.0% | |
| ACCTGCACCACTACAAATAT+GGG | + | chr5.2:77531222-77531241 | MS.gene030050:intron | 40.0% | |
| ACTTTAGCTGGTGGAAAATG+TGG | - | chr5.2:77532721-77532740 | None:intergenic | 40.0% | |
| AGAAGGGTAAAAGAGCAAGT+TGG | - | chr5.2:77530707-77530726 | None:intergenic | 40.0% | |
| ATAGGCTTCTAGACCAAATG+TGG | - | chr5.2:77531718-77531737 | None:intergenic | 40.0% | |
| ATGAAGCTGAATCTCACTAC+TGG | + | chr5.2:77529555-77529574 | MS.gene030050:CDS | 40.0% | |
| ATTGGTGGAGTTCTTTCATG+GGG | + | chr5.2:77532062-77532081 | MS.gene030050:CDS | 40.0% | |
| CAAAACAGGTTACATGACAC+TGG | + | chr5.2:77532964-77532983 | MS.gene030050:CDS | 40.0% | |
| CATGGTTTACTTGTGTAGGT+GGG | + | chr5.2:77530947-77530966 | MS.gene030050:intron | 40.0% | |
| CGATAGCAGTTCCAATAACT+TGG | - | chr5.2:77533015-77533034 | None:intergenic | 40.0% | |
| CTCAAAGAAAGCAGCTTACA+TGG | + | chr5.2:77532137-77532156 | MS.gene030050:CDS | 40.0% | |
| CTCATGCAAGACTTCAAAAC+AGG | + | chr5.2:77532950-77532969 | MS.gene030050:CDS | 40.0% | |
| CTTCTTTGAATGTTTCGGCT+GGG | + | chr5.2:77529586-77529605 | MS.gene030050:CDS | 40.0% | |
| CTTTAGCTGGTGGAAAATGT+GGG | - | chr5.2:77532720-77532739 | None:intergenic | 40.0% | |
| GATTGGTGGAGTTCTTTCAT+GGG | + | chr5.2:77532061-77532080 | MS.gene030050:CDS | 40.0% | |
| GCAAAACAAATTCCAGAAGC+TGG | + | chr5.2:77531006-77531025 | MS.gene030050:CDS | 40.0% | |
| GCAGAAACAGGTTACTGTTA+GGG | + | chr5.2:77529485-77529504 | MS.gene030050:CDS | 40.0% | |
| GCCAATGATGTTAAGAGTCT+TGG | + | chr5.2:77531033-77531052 | MS.gene030050:CDS | 40.0% | |
| GGTTCTTCTTTGTCAAGACA+TGG | + | chr5.2:77529616-77529635 | MS.gene030050:CDS | 40.0% | |
| GTATTCTCCTGTCTGGTAAA+AGG | - | chr5.2:77529678-77529697 | None:intergenic | 40.0% | |
| TACATGGTCTTCAAGGTTAC+AGG | + | chr5.2:77532153-77532172 | MS.gene030050:CDS | 40.0% | |
| TACCATGCATTTGGTACTCT+TGG | + | chr5.2:77533070-77533089 | MS.gene030050:CDS | 40.0% | |
| TAGGCTTCTAGACCAAATGT+GGG | - | chr5.2:77531717-77531736 | None:intergenic | 40.0% | |
| TATTCCTGTTCCTATGGCTA+TGG | + | chr5.2:77533273-77533292 | MS.gene030050:CDS | 40.0% | |
| TCCACTGAAAAAGGGTTTGA+AGG | + | chr5.2:77529444-77529463 | MS.gene030050:CDS | 40.0% | |
| TGAAGCTGAATCTCACTACT+GGG | + | chr5.2:77529556-77529575 | MS.gene030050:CDS | 40.0% | |
| TGATGTGATACCACTTTAGC+TGG | - | chr5.2:77532733-77532752 | None:intergenic | 40.0% | |
| TGATTCAAACATCAGCAGTG+AGG | - | chr5.2:77531439-77531458 | None:intergenic | 40.0% | |
| TGATTGGTGGAGTTCTTTCA+TGG | + | chr5.2:77532060-77532079 | MS.gene030050:CDS | 40.0% | |
| TGCACTCGTTTATCGAAACA+TGG | + | chr5.2:77533123-77533142 | MS.gene030050:CDS | 40.0% | |
| TGGCTCACAAACATGGATTT+CGG | - | chr5.2:77532995-77533014 | None:intergenic | 40.0% | |
| TTCAGTGGTTCCACTTAGAA+AGG | + | chr5.2:77531107-77531126 | MS.gene030050:CDS | 40.0% | |
| TTGGTCTAGAAGCCTATCAA+AGG | + | chr5.2:77531721-77531740 | MS.gene030050:CDS | 40.0% | |
| TTTAGCTGGTGGAAAATGTG+GGG | - | chr5.2:77532719-77532738 | None:intergenic | 40.0% | |
| ! | AAGGAAAATCGGTTCCTTCA+TGG | + | chr5.2:77529463-77529482 | MS.gene030050:CDS | 40.0% |
| ! | ACATTTTCCACCAGCTAAAG+TGG | + | chr5.2:77532720-77532739 | MS.gene030050:CDS | 40.0% |
| ! | ATCTTGTGCTTTTGTGTTGG+TGG | + | chr5.2:77529954-77529973 | MS.gene030050:intron | 40.0% |
| ! | CAAAGTACGAGGCAGTTTTT+CGG | - | chr5.2:77533181-77533200 | None:intergenic | 40.0% |
| ! | CATCGAATGAAAGTGTAGGT+GGG | - | chr5.2:77532598-77532617 | None:intergenic | 40.0% |
| ! | CTTCTCCTTTAGCTTCTTGT+GGG | + | chr5.2:77531638-77531657 | MS.gene030050:CDS | 40.0% |
| ! | CTTTCTTGGTCTCTTTTCAG+TGG | + | chr5.2:77531092-77531111 | MS.gene030050:CDS | 40.0% |
| ! | CTTTTCAACCAGCAACAGAA+AGG | - | chr5.2:77529989-77530008 | None:intergenic | 40.0% |
| ! | GAAGATGGCTAATTTTCCGT+AGG | - | chr5.2:77532837-77532856 | None:intergenic | 40.0% |
| ! | GTGGTGCAGGTTACATTTTA+AGG | - | chr5.2:77531213-77531232 | None:intergenic | 40.0% |
| ! | TCATCGAATGAAAGTGTAGG+TGG | - | chr5.2:77532599-77532618 | None:intergenic | 40.0% |
| ! | TCTTCTCCTTTAGCTTCTTG+TGG | + | chr5.2:77531637-77531656 | MS.gene030050:CDS | 40.0% |
| ! | TGATTTGCGGAGATGGAATT+TGG | + | chr5.2:77533422-77533441 | MS.gene030050:CDS | 40.0% |
| ! | TTCCAATGGTTTTTCACTGC+TGG | + | chr5.2:77531666-77531685 | MS.gene030050:CDS | 40.0% |
| ! | TTCTCCTTTAGCTTCTTGTG+GGG | + | chr5.2:77531639-77531658 | MS.gene030050:CDS | 40.0% |
| ! | TTGTATCGCCTTGTGTTTTC+TGG | + | chr5.2:77533041-77533060 | MS.gene030050:CDS | 40.0% |
| ! | TTTACTTGTGTAGGTGGGTT+TGG | + | chr5.2:77530952-77530971 | MS.gene030050:intron | 40.0% |
| ! | TTTTTCTGCTACCTATGTGG+GGG | + | chr5.2:77531998-77532017 | MS.gene030050:CDS | 40.0% |
| !! | CCTCTCATTGGTGCTAAAAA+AGG | + | chr5.2:77532095-77532114 | MS.gene030050:CDS | 40.0% |
| !! | GTTGCTTCTGGTTTGATTTG+CGG | + | chr5.2:77533409-77533428 | MS.gene030050:CDS | 40.0% |
| !! | TGCTTTCTTTGAGATCAGCA+GGG | - | chr5.2:77532130-77532149 | None:intergenic | 40.0% |
| !! | TTGGTGCTAAAAAAGGAGAC+TGG | + | chr5.2:77532102-77532121 | MS.gene030050:CDS | 40.0% |
| !!! | CCTTTTTTAGCACCAATGAG+AGG | - | chr5.2:77532098-77532117 | None:intergenic | 40.0% |
| !!! | TCCTTCAAACCCTTTTTCAG+TGG | - | chr5.2:77529448-77529467 | None:intergenic | 40.0% |
| !!! | TCTTTTTCGATGTGACTGGT+TGG | + | chr5.2:77532384-77532403 | MS.gene030050:intron | 40.0% |
| AAACGAGTGCATAAGGTGCA+GGG | - | chr5.2:77533114-77533133 | None:intergenic | 45.0% | |
| AATGGTATCGCCATAGCCAT+AGG | - | chr5.2:77533286-77533305 | None:intergenic | 45.0% | |
| ACCAAGTTGCTTGAGAAAGC+TGG | + | chr5.2:77529639-77529658 | MS.gene030050:CDS | 45.0% | |
| ACCAGCTTTCTCAAGCAACT+TGG | - | chr5.2:77529643-77529662 | None:intergenic | 45.0% | |
| AGACAAAGTAGCACAGTCTG+AGG | + | chr5.2:77532556-77532575 | MS.gene030050:CDS | 45.0% | |
| AGCAGCTTACATGGTCTTCA+AGG | + | chr5.2:77532146-77532165 | MS.gene030050:CDS | 45.0% | |
| AGGAGGGGATTTGATCTTTG+AGG | - | chr5.2:77532643-77532662 | None:intergenic | 45.0% | |
| AGTTGCTTGAGAAAGCTGGT+TGG | + | chr5.2:77529643-77529662 | MS.gene030050:CDS | 45.0% | |
| ATCTGTTAGTCCACAGCCAT+AGG | - | chr5.2:77532798-77532817 | None:intergenic | 45.0% | |
| ATGGCAATACTAGGTGTGGA+TGG | + | chr5.2:77533142-77533161 | MS.gene030050:CDS | 45.0% | |
| ATTCGATGACAAGCGCAGAA+CGG | + | chr5.2:77532610-77532629 | MS.gene030050:CDS | 45.0% | |
| CACCAGCAGTGAAAAACCAT+TGG | - | chr5.2:77531671-77531690 | None:intergenic | 45.0% | |
| CCAGCCGAAACATTCAAAGA+AGG | - | chr5.2:77529588-77529607 | None:intergenic | 45.0% | |
| CCTTCTTTGAATGTTTCGGC+TGG | + | chr5.2:77529585-77529604 | MS.gene030050:CDS | 45.0% | |
| GAAACCCCACAAGAAGCTAA+AGG | - | chr5.2:77531646-77531665 | None:intergenic | 45.0% | |
| GCAAGAGCAAGAAAAGAGCT+AGG | - | chr5.2:77533454-77533473 | None:intergenic | 45.0% | |
| GCAGCTAATGCTAAGGTTGA+TGG | + | chr5.2:77533514-77533533 | MS.gene030050:CDS | 45.0% | |
| GCTAGTGGAATTGCATTCAG+CGG | + | chr5.2:77529723-77529742 | MS.gene030050:CDS | 45.0% | |
| GGCAGAAACAGGTTACTGTT+AGG | + | chr5.2:77529484-77529503 | MS.gene030050:CDS | 45.0% | |
| TAAACGAGTGCATAAGGTGC+AGG | - | chr5.2:77533115-77533134 | None:intergenic | 45.0% | |
| TCAAAGATCAAATCCCCTCC+TGG | + | chr5.2:77532642-77532661 | MS.gene030050:CDS | 45.0% | |
| TCTTGTGGGGTTTCTTCCAA+TGG | + | chr5.2:77531652-77531671 | MS.gene030050:CDS | 45.0% | |
| TGGATTCTCAGTGGAATGAG+TGG | + | chr5.2:77530819-77530838 | MS.gene030050:intron | 45.0% | |
| TGGTTAGTGTATCATCGGGT+GGG | + | chr5.2:77529906-77529925 | MS.gene030050:intron | 45.0% | |
| TGTGATACCACTTTAGCTGG+TGG | - | chr5.2:77532730-77532749 | None:intergenic | 45.0% | |
| TTAGCTGGTGGAAAATGTGG+GGG | - | chr5.2:77532718-77532737 | None:intergenic | 45.0% | |
| TTGGTTAGTGTATCATCGGG+TGG | + | chr5.2:77529905-77529924 | MS.gene030050:intron | 45.0% | |
| TTTGGTACTCTTGGTCAACC+TGG | + | chr5.2:77533079-77533098 | MS.gene030050:CDS | 45.0% | |
| ! | AATGAAAGTGTAGGTGGGAG+AGG | - | chr5.2:77532593-77532612 | None:intergenic | 45.0% |
| ! | ACAGCCATAGGCATTGCAAA+AGG | - | chr5.2:77532786-77532805 | None:intergenic | 45.0% |
| ! | ACTTGTGTTGTTGCTGCTAG+TGG | + | chr5.2:77529708-77529727 | MS.gene030050:CDS | 45.0% |
| ! | AGCTCTTTTCTTGCTCTTGC+TGG | + | chr5.2:77533454-77533473 | MS.gene030050:CDS | 45.0% |
| ! | ATGGCTGTGGACTAACAGAT+TGG | + | chr5.2:77532798-77532817 | MS.gene030050:CDS | 45.0% |
| ! | ATTTTCCGTAGGTCGATGCA+AGG | - | chr5.2:77532826-77532845 | None:intergenic | 45.0% |
| ! | GGGTTTGGTAGCTACTTGTT+TGG | + | chr5.2:77530967-77530986 | MS.gene030050:CDS | 45.0% |
| ! | GTCTAGAGCAGCTAATGCTA+AGG | + | chr5.2:77533507-77533526 | MS.gene030050:CDS | 45.0% |
| ! | TTCTTTCATGGGGTGTCATG+TGG | + | chr5.2:77532072-77532091 | MS.gene030050:CDS | 45.0% |
| ! | TTTTCCGTAGGTCGATGCAA+GGG | - | chr5.2:77532825-77532844 | None:intergenic | 45.0% |
| ! | TTTTGCAATGCCTATGGCTG+TGG | + | chr5.2:77532785-77532804 | MS.gene030050:CDS | 45.0% |
| !! | ACTGGGTTGATATGGGTTTC+TGG | + | chr5.2:77529835-77529854 | MS.gene030050:intron | 45.0% |
| !! | CTAGCCTTTTGCAATGCCTA+TGG | + | chr5.2:77532779-77532798 | MS.gene030050:CDS | 45.0% |
| !! | CTGCTTTCTTTGAGATCAGC+AGG | - | chr5.2:77532131-77532150 | None:intergenic | 45.0% |
| !! | GACCAAGAGTACCAAATGCA+TGG | - | chr5.2:77533075-77533094 | None:intergenic | 45.0% |
| !! | GTAACCTGTTTCTGCCATGA+AGG | - | chr5.2:77529480-77529499 | None:intergenic | 45.0% |
| !! | TCTGGTTTGATTTGCGGAGA+TGG | + | chr5.2:77533415-77533434 | MS.gene030050:CDS | 45.0% |
| !! | TGGGGTTACTGGGTTGATAT+GGG | + | chr5.2:77529828-77529847 | MS.gene030050:intron | 45.0% |
| !! | TTGGGGTTACTGGGTTGATA+TGG | + | chr5.2:77529827-77529846 | MS.gene030050:intron | 45.0% |
| !!! | AATTTACTTTTAATTTAATT+AGG | + | chr5.2:77530022-77530041 | MS.gene030050:intron | 5.0% |
| !!! | TTTTTATTTATTTAAATTGT+AGG | + | chr5.2:77532201-77532220 | MS.gene030050:intron | 5.0% |
| AATGTTTCGGCTGGGTTGCT+AGG | + | chr5.2:77529594-77529613 | MS.gene030050:CDS | 50.0% | |
| ACCAGCAACAGAAAGGGTGA+AGG | - | chr5.2:77529982-77530001 | None:intergenic | 50.0% | |
| ATAGCCTGCGATAGCAAACC+AGG | - | chr5.2:77532663-77532682 | None:intergenic | 50.0% | |
| ATCGCCATAGCCATAGGAAC+AGG | - | chr5.2:77533280-77533299 | None:intergenic | 50.0% | |
| ATGTTTCGGCTGGGTTGCTA+GGG | + | chr5.2:77529595-77529614 | MS.gene030050:CDS | 50.0% | |
| CACATGCTGCTAAACTGGCT+AGG | - | chr5.2:77532895-77532914 | None:intergenic | 50.0% | |
| CCAGCAACAGAAAGGGTGAA+GGG | - | chr5.2:77529981-77530000 | None:intergenic | 50.0% | |
| CTAGCCAGTTTAGCAGCATG+TGG | + | chr5.2:77532893-77532912 | MS.gene030050:CDS | 50.0% | |
| GACACCACATGCTGCTAAAC+TGG | - | chr5.2:77532900-77532919 | None:intergenic | 50.0% | |
| GCATTGCAAAAGGCTAGTGC+GGG | - | chr5.2:77532776-77532795 | None:intergenic | 50.0% | |
| GCCCATATTTGTAGTGGTGC+AGG | - | chr5.2:77531226-77531245 | None:intergenic | 50.0% | |
| GGCATTGCAAAAGGCTAGTG+CGG | - | chr5.2:77532777-77532796 | None:intergenic | 50.0% | |
| GGTTCCTTCATGGCAGAAAC+AGG | + | chr5.2:77529473-77529492 | MS.gene030050:CDS | 50.0% | |
| GTGCTAGTAGTCTACCTCAG+CGG | + | chr5.2:77530756-77530775 | MS.gene030050:intron | 50.0% | |
| GTTTGATTGCGGTTTCGTCC+TGG | + | chr5.2:77531376-77531395 | MS.gene030050:intron | 50.0% | |
| TATCATCCCAACCCCCACAT+AGG | - | chr5.2:77532012-77532031 | None:intergenic | 50.0% | |
| TGAGCTGTTGCAGTACCACT+TGG | - | chr5.2:77531546-77531565 | None:intergenic | 50.0% | |
| TGCTCCAAATGCATCAGCCT+TGG | - | chr5.2:77533386-77533405 | None:intergenic | 50.0% | |
| ! | CCATCTTCACTATCGGTGCT+TGG | + | chr5.2:77532849-77532868 | MS.gene030050:CDS | 50.0% |
| ! | CTCATCGAGTTGTTCATCGG+AGG | - | chr5.2:77529421-77529440 | None:intergenic | 50.0% |
| ! | TTCACTATCGGTGCTTGGAC+AGG | + | chr5.2:77532854-77532873 | MS.gene030050:CDS | 50.0% |
| ! | TTCACTGCTGGTGATGCTTG+TGG | + | chr5.2:77531678-77531697 | MS.gene030050:CDS | 50.0% |
| ! | TTTGGAGCAGCTGTTGCTTC+TGG | + | chr5.2:77533397-77533416 | MS.gene030050:CDS | 50.0% |
| !! | CCAAGCACCGATAGTGAAGA+TGG | - | chr5.2:77532852-77532871 | None:intergenic | 50.0% |
| CCCTTCACCCTTTCTGTTGC+TGG | + | chr5.2:77529978-77529997 | MS.gene030050:intron | 55.0% | |
| CCTGCGATAGCAAACCAGGA+GGG | - | chr5.2:77532659-77532678 | None:intergenic | 55.0% | |
| CTGCGATAGCAAACCAGGAG+GGG | - | chr5.2:77532658-77532677 | None:intergenic | 55.0% | |
| CTGCTACCTATGTGGGGGTT+GGG | + | chr5.2:77532003-77532022 | MS.gene030050:CDS | 55.0% | |
| CTGGTGGAAAATGTGGGGGA+TGG | - | chr5.2:77532714-77532733 | None:intergenic | 55.0% | |
| TCAACGTCACGTCGTCGATG+AGG | - | chr5.2:77529396-77529415 | None:intergenic | 55.0% | |
| TCACGTCGTCGATGAGGTTC+TGG | - | chr5.2:77529390-77529409 | None:intergenic | 55.0% | |
| TCATTGGCAGTGCCAGCTTC+TGG | - | chr5.2:77531021-77531040 | None:intergenic | 55.0% | |
| TCTGCTACCTATGTGGGGGT+TGG | + | chr5.2:77532002-77532021 | MS.gene030050:CDS | 55.0% | |
| ! | GGTGTCATGTGGCCTCTCAT+TGG | + | chr5.2:77532083-77532102 | MS.gene030050:CDS | 55.0% |
| ! | TGGTCCCTTGCATCGACCTA+CGG | + | chr5.2:77532818-77532837 | MS.gene030050:CDS | 55.0% |
| !! | GTAGGTGGGAGAGGAGCATT+TGG | - | chr5.2:77532584-77532603 | None:intergenic | 55.0% |
| ACTGGCTAGGATACCGCCGT+TGG | - | chr5.2:77532882-77532901 | None:intergenic | 60.0% | |
| GCCTGCGATAGCAAACCAGG+AGG | - | chr5.2:77532660-77532679 | None:intergenic | 60.0% | |
| GGGTGGGTCCCACTGTCAAT+AGG | + | chr5.2:77529922-77529941 | MS.gene030050:intron | 60.0% | |
| GGTGCAGGGTATGCTGAACC+AGG | - | chr5.2:77533100-77533119 | None:intergenic | 60.0% | |
| GGTGCTTGGACAGGAGCCAA+CGG | + | chr5.2:77532863-77532882 | MS.gene030050:CDS | 60.0% | |
| !! | CCCTCCTGGTTTGCTATCGC+AGG | + | chr5.2:77532656-77532675 | MS.gene030050:CDS | 60.0% |
| GCTTGGACAGGAGCCAACGG+CGG | + | chr5.2:77532866-77532885 | MS.gene030050:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 77529381 | 77533552 | 77529381 | ID=MS.gene030050 |
| chr5.2 | mRNA | 77529381 | 77533552 | 77529381 | ID=MS.gene030050.t1;Parent=MS.gene030050 |
| chr5.2 | exon | 77529381 | 77529744 | 77529381 | ID=MS.gene030050.t1.exon1;Parent=MS.gene030050.t1 |
| chr5.2 | CDS | 77529381 | 77529744 | 77529381 | ID=cds.MS.gene030050.t1;Parent=MS.gene030050.t1 |
| chr5.2 | exon | 77530965 | 77531128 | 77530965 | ID=MS.gene030050.t1.exon2;Parent=MS.gene030050.t1 |
| chr5.2 | CDS | 77530965 | 77531128 | 77530965 | ID=cds.MS.gene030050.t1;Parent=MS.gene030050.t1 |
| chr5.2 | exon | 77531513 | 77531745 | 77531513 | ID=MS.gene030050.t1.exon3;Parent=MS.gene030050.t1 |
| chr5.2 | CDS | 77531513 | 77531745 | 77531513 | ID=cds.MS.gene030050.t1;Parent=MS.gene030050.t1 |
| chr5.2 | exon | 77531986 | 77532175 | 77531986 | ID=MS.gene030050.t1.exon4;Parent=MS.gene030050.t1 |
| chr5.2 | CDS | 77531986 | 77532175 | 77531986 | ID=cds.MS.gene030050.t1;Parent=MS.gene030050.t1 |
| chr5.2 | exon | 77532455 | 77533552 | 77532455 | ID=MS.gene030050.t1.exon5;Parent=MS.gene030050.t1 |
| chr5.2 | CDS | 77532455 | 77533552 | 77532455 | ID=cds.MS.gene030050.t1;Parent=MS.gene030050.t1 |
| Gene Sequence |
| Protein sequence |
