Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030054.t1 | XP_003617446.1 | 99.3 | 407 | 3 | 0 | 1 | 407 | 133 | 539 | 1.90E-232 | 814.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030054.t1 | Q9SHJ5 | 64.5 | 409 | 133 | 6 | 1 | 398 | 178 | 585 | 2.4e-146 | 520.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030054.t1 | G7K3C7 | 99.3 | 407 | 3 | 0 | 1 | 407 | 133 | 539 | 1.4e-232 | 814.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07326 | MS.gene030054 | PPI |
| MS.gene030054 | MS.gene20875 | PPI |
| MS.gene005496 | MS.gene030054 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030054.t1 | MTR_5g091660 | 99.263 | 407 | 3 | 0 | 1 | 407 | 133 | 539 | 0.0 | 833 |
| MS.gene030054.t1 | MTR_3g448430 | 70.426 | 399 | 113 | 3 | 1 | 397 | 116 | 511 | 0.0 | 580 |
| MS.gene030054.t1 | MTR_3g048330 | 76.727 | 275 | 60 | 2 | 129 | 399 | 1 | 275 | 7.24e-153 | 433 |
| MS.gene030054.t1 | MTR_1g040500 | 51.951 | 410 | 184 | 4 | 1 | 402 | 92 | 496 | 1.83e-145 | 425 |
| MS.gene030054.t1 | MTR_5g061520 | 49.751 | 402 | 185 | 6 | 4 | 396 | 87 | 480 | 5.25e-137 | 401 |
| MS.gene030054.t1 | MTR_4g415290 | 52.099 | 405 | 182 | 6 | 1 | 399 | 93 | 491 | 5.36e-136 | 399 |
| MS.gene030054.t1 | MTR_1g086650 | 50.860 | 407 | 186 | 8 | 4 | 402 | 134 | 534 | 1.36e-135 | 399 |
| MS.gene030054.t1 | MTR_7g067380 | 52.239 | 402 | 181 | 6 | 1 | 397 | 96 | 491 | 1.26e-134 | 395 |
| MS.gene030054.t1 | MTR_5g080360 | 47.666 | 407 | 203 | 5 | 1 | 401 | 74 | 476 | 1.46e-128 | 379 |
| MS.gene030054.t1 | MTR_8g030620 | 46.359 | 412 | 209 | 6 | 1 | 405 | 99 | 505 | 1.36e-124 | 370 |
| MS.gene030054.t1 | MTR_7g075930 | 59.524 | 84 | 16 | 1 | 144 | 227 | 3 | 68 | 2.83e-24 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030054.t1 | AT1G06520 | 64.548 | 409 | 133 | 6 | 1 | 398 | 178 | 585 | 0.0 | 536 |
| MS.gene030054.t1 | AT1G02390 | 49.879 | 413 | 186 | 8 | 4 | 399 | 121 | 529 | 1.15e-130 | 386 |
| MS.gene030054.t1 | AT4G01950 | 49.877 | 407 | 187 | 10 | 6 | 399 | 117 | 519 | 4.02e-129 | 382 |
| MS.gene030054.t1 | AT3G11430 | 49.029 | 412 | 198 | 7 | 1 | 405 | 83 | 489 | 7.40e-129 | 380 |
| MS.gene030054.t1 | AT4G01950 | 49.877 | 407 | 187 | 10 | 6 | 399 | 145 | 547 | 1.13e-128 | 382 |
| MS.gene030054.t1 | AT2G38110 | 50.123 | 405 | 188 | 7 | 1 | 397 | 96 | 494 | 4.69e-128 | 379 |
| MS.gene030054.t1 | AT5G06090 | 47.445 | 411 | 208 | 6 | 1 | 406 | 81 | 488 | 6.20e-126 | 373 |
| MS.gene030054.t1 | AT4G00400 | 46.117 | 412 | 210 | 6 | 1 | 405 | 94 | 500 | 1.11e-123 | 367 |
| MS.gene030054.t1 | AT1G01610 | 46.117 | 412 | 209 | 8 | 1 | 404 | 94 | 500 | 1.27e-116 | 349 |
| MS.gene030054.t1 | AT3G11325 | 43.542 | 271 | 113 | 3 | 135 | 401 | 139 | 373 | 7.96e-72 | 230 |
| MS.gene030054.t1 | AT3G11325 | 43.542 | 271 | 113 | 3 | 135 | 401 | 142 | 376 | 9.63e-72 | 230 |
Find 69 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATATGTTACTGCAGTTAA+AGG | 0.179389 | 5.2:+77551782 | None:intergenic |
| CTTCCATCATGAAATATTAA+TGG | 0.211384 | 5.2:+77552067 | None:intergenic |
| AGAGCACTTAAAGAGTATTT+TGG | 0.236160 | 5.2:-77552569 | MS.gene030054:CDS |
| AGTTATCATATTCAAATTCT+TGG | 0.253973 | 5.2:-77551464 | MS.gene030054:CDS |
| CCAGCACATGTAAGTTCTTT+AGG | 0.260758 | 5.2:+77551434 | None:intergenic |
| GGTGATAGAAAACCTGATAT+TGG | 0.266071 | 5.2:-77552548 | MS.gene030054:CDS |
| TCTCTACATGTTGTTCCTTC+AGG | 0.287385 | 5.2:+77551641 | None:intergenic |
| GCAATTTATAGAATCCTTCT+TGG | 0.289025 | 5.2:-77551974 | MS.gene030054:CDS |
| AAACAGTTGGGTGATGCTTT+GGG | 0.297561 | 5.2:-77551374 | MS.gene030054:CDS |
| TTACAAATTAGCACTTGAAT+TGG | 0.315340 | 5.2:-77551939 | MS.gene030054:CDS |
| GGCACAGAGTTACACACTTT+TGG | 0.319357 | 5.2:-77552641 | MS.gene030054:CDS |
| TAGCACTTGAATTGGGAGTT+TGG | 0.323759 | 5.2:-77551931 | MS.gene030054:CDS |
| TCATGAAATATTAATGGCTT+TGG | 0.325007 | 5.2:+77552073 | None:intergenic |
| TCCCTTGGCATGATTGAGTT+TGG | 0.327913 | 5.2:+77552103 | None:intergenic |
| GAACTAAACCTTAACAAATA+TGG | 0.328528 | 5.2:+77551617 | None:intergenic |
| TATGAGGTTCTTGCTTCAGC+TGG | 0.331253 | 5.2:-77552746 | MS.gene030054:CDS |
| ACAAACAAAACACCTTTGTT+TGG | 0.332605 | 5.2:+77551860 | None:intergenic |
| GAAGTTCCAATTCCAATATC+AGG | 0.337684 | 5.2:+77552536 | None:intergenic |
| GAAACAGTTGGGTGATGCTT+TGG | 0.337863 | 5.2:-77551375 | MS.gene030054:CDS |
| AGAAAACCTGATATTGGAAT+TGG | 0.340801 | 5.2:-77552542 | MS.gene030054:CDS |
| GGCTTTGGATATTTGTCCCT+TGG | 0.362641 | 5.2:+77552088 | None:intergenic |
| GATAAGTATATGATGCTTGC+AGG | 0.371641 | 5.2:-77551323 | MS.gene030054:CDS |
| AATTCAAGTGCTAATTTGTA+AGG | 0.371660 | 5.2:+77551941 | None:intergenic |
| TAGTTCATTGTTTGCTGAGT+TGG | 0.382543 | 5.2:-77551600 | MS.gene030054:CDS |
| AATGATGTGCTTAAGAAAAC+AGG | 0.399947 | 5.2:+77551812 | None:intergenic |
| GTAGAGAACCATATTTGTTA+AGG | 0.401265 | 5.2:-77551625 | MS.gene030054:CDS |
| TGAATATGATAACTTGGCTT+AGG | 0.405031 | 5.2:+77551473 | None:intergenic |
| AGCTAGCGGATTGAAGTGTT+TGG | 0.407360 | 5.2:-77551519 | MS.gene030054:CDS |
| GTTATCATATTCAAATTCTT+GGG | 0.414102 | 5.2:-77551463 | MS.gene030054:CDS |
| TACAAATTAGCACTTGAATT+GGG | 0.425342 | 5.2:-77551938 | MS.gene030054:CDS |
| TCTTAATCTTCAAGTTTATG+AGG | 0.426090 | 5.2:-77552762 | MS.gene030054:CDS |
| CACAAGTGTGCCTAGAGTTA+TGG | 0.426617 | 5.2:-77552708 | MS.gene030054:CDS |
| AGATTCTCTAAATAAAACTT+TGG | 0.454948 | 5.2:+77552782 | None:intergenic |
| GTGCCTAGAGTTATGGTAGA+AGG | 0.456952 | 5.2:-77552701 | MS.gene030054:CDS |
| ATGAGGTTCTTGCTTCAGCT+GGG | 0.457350 | 5.2:-77552745 | MS.gene030054:CDS |
| ATTGCTAAAATAATTCCAAT+TGG | 0.461462 | 5.2:+77551992 | None:intergenic |
| AGAATTTGAATATGATAACT+TGG | 0.464884 | 5.2:+77551467 | None:intergenic |
| ATGATGCTTGCAGGGAATGA+AGG | 0.469185 | 5.2:-77551314 | MS.gene030054:CDS |
| ATGCACACATAGGACATTGT+TGG | 0.480393 | 5.2:-77551837 | MS.gene030054:CDS |
| ATGTTCATGTGGCTACCAAT+TGG | 0.484031 | 5.2:-77552007 | MS.gene030054:CDS |
| TAATTATATACAGAAACAGT+TGG | 0.495466 | 5.2:-77551387 | MS.gene030054:CDS |
| TTTAAAACTTACCTTGCAAG+TGG | 0.500492 | 5.2:+77552487 | None:intergenic |
| GATTTAGTTGTTTGTCCTGA+AGG | 0.517928 | 5.2:-77551656 | MS.gene030054:CDS |
| CAAGTGCTAATTTGTAAGGA+AGG | 0.518754 | 5.2:+77551945 | None:intergenic |
| CCTAAAGAACTTACATGTGC+TGG | 0.521671 | 5.2:-77551434 | MS.gene030054:CDS |
| TCATATTCAAATTCTTGGGA+AGG | 0.522054 | 5.2:-77551459 | MS.gene030054:CDS |
| AGGACATGGAAAATGTTTCA+AGG | 0.522825 | 5.2:-77552814 | None:intergenic |
| GGACATGGAAAATGTTTCAA+GGG | 0.537352 | 5.2:-77552813 | None:intergenic |
| TGATGCTTGCAGGGAATGAA+GGG | 0.541271 | 5.2:-77551313 | MS.gene030054:CDS |
| TTGAAAGAGTATTTGAGTGT+CGG | 0.541833 | 5.2:-77552674 | MS.gene030054:CDS |
| AACAGTTGGGTGATGCTTTG+GGG | 0.543063 | 5.2:-77551373 | MS.gene030054:CDS |
| AAGCCATTAATATTTCATGA+TGG | 0.544073 | 5.2:-77552070 | MS.gene030054:CDS |
| AATCCTTCTACCATAACTCT+AGG | 0.553018 | 5.2:+77552698 | None:intergenic |
| AATTATATACAGAAACAGTT+GGG | 0.561344 | 5.2:-77551386 | MS.gene030054:CDS |
| CTTGAATTGGGAGTTTGGAG+TGG | 0.566374 | 5.2:-77551926 | MS.gene030054:CDS |
| ATGCAAAAGTTACTAAGAGA+AGG | 0.576242 | 5.2:-77551680 | MS.gene030054:CDS |
| GTCCAAACTCAATCATGCCA+AGG | 0.578628 | 5.2:-77552105 | MS.gene030054:CDS |
| GAACATGTAGAGTGTTGCTA+AGG | 0.578977 | 5.2:+77552024 | None:intergenic |
| TAGAGTGTTGCTAAGGGTGT+TGG | 0.593516 | 5.2:+77552031 | None:intergenic |
| ACATGAGTATTCATTGCCAC+AGG | 0.603998 | 5.2:+77551563 | None:intergenic |
| AAAGAACTTACATGTGCTGG+TGG | 0.610061 | 5.2:-77551431 | MS.gene030054:CDS |
| ATAAGTATATGATGCTTGCA+GGG | 0.611754 | 5.2:-77551322 | MS.gene030054:CDS |
| AAGGAAGGAAAATACCAAGA+AGG | 0.620364 | 5.2:+77551960 | None:intergenic |
| TCCAAACTCAATCATGCCAA+GGG | 0.637627 | 5.2:-77552104 | MS.gene030054:CDS |
| ACAAGAGACAGAAAACAAGA+TGG | 0.639648 | 5.2:-77551710 | MS.gene030054:CDS |
| ACACTTCAATCCGCTAGCTG+TGG | 0.639946 | 5.2:+77551523 | None:intergenic |
| CAACACTCTACATGTTCATG+TGG | 0.648188 | 5.2:-77552018 | MS.gene030054:CDS |
| GGCTAATGAGATAGTGCCTG+TGG | 0.689080 | 5.2:-77551579 | MS.gene030054:CDS |
| AACATGTAGAGTGTTGCTAA+GGG | 0.697607 | 5.2:+77552025 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTAAAATTCCAAATA+AGG | + | chr5.2:77551800-77551819 | None:intergenic | 10.0% |
| !! | TAAATTAATTATGTTCTATA+TGG | + | chr5.2:77551858-77551877 | None:intergenic | 10.0% |
| !! | AACATTATTATTTCCTTATT+TGG | - | chr5.2:77551784-77551803 | MS.gene030054:CDS | 15.0% |
| !!! | AAGGAAATAATAATGTTTTT+TGG | + | chr5.2:77551781-77551800 | None:intergenic | 15.0% |
| !!! | ATTATTATTTTCTAACTGTT+GGG | - | chr5.2:77551682-77551701 | MS.gene030054:CDS | 15.0% |
| !! | AAAAAAACAAAACCAAACAA+AGG | - | chr5.2:77552211-77552230 | MS.gene030054:intron | 20.0% |
| !! | AATTATATACAGAAACAGTT+GGG | - | chr5.2:77552697-77552716 | MS.gene030054:CDS | 20.0% |
| !! | AGAATTTGAATATGATAACT+TGG | + | chr5.2:77552619-77552638 | None:intergenic | 20.0% |
| !! | AGATTCTCTAAATAAAACTT+TGG | + | chr5.2:77551304-77551323 | None:intergenic | 20.0% |
| !! | AGTTATCATATTCAAATTCT+TGG | - | chr5.2:77552619-77552638 | MS.gene030054:CDS | 20.0% |
| !! | ATTGCTAAAATAATTCCAAT+TGG | + | chr5.2:77552094-77552113 | None:intergenic | 20.0% |
| !! | GTTATCATATTCAAATTCTT+GGG | - | chr5.2:77552620-77552639 | MS.gene030054:CDS | 20.0% |
| !! | TAATTATATACAGAAACAGT+TGG | - | chr5.2:77552696-77552715 | MS.gene030054:CDS | 20.0% |
| !!! | AACAATTTTTTTTAAAGGGT+TGG | - | chr5.2:77551617-77551636 | MS.gene030054:CDS | 20.0% |
| !!! | CATTATTATTTTCTAACTGT+TGG | - | chr5.2:77551681-77551700 | MS.gene030054:CDS | 20.0% |
| !!! | TGTTTGGTTTTGTTTTTTTA+GGG | + | chr5.2:77552210-77552229 | None:intergenic | 20.0% |
| !!! | TTCAATGTACAAATTTTACT+AGG | - | chr5.2:77552734-77552753 | MS.gene030054:CDS | 20.0% |
| !!! | TTGTTTGGTTTTGTTTTTTT+AGG | + | chr5.2:77552211-77552230 | None:intergenic | 20.0% |
| ! | AAGCCATTAATATTTCATGA+TGG | - | chr5.2:77552013-77552032 | MS.gene030054:CDS | 25.0% |
| ! | CTTCCATCATGAAATATTAA+TGG | + | chr5.2:77552019-77552038 | None:intergenic | 25.0% |
| ! | GAACTAAACCTTAACAAATA+TGG | + | chr5.2:77552469-77552488 | None:intergenic | 25.0% |
| ! | GGATTCATCAAGAAAAAAAT+AGG | + | chr5.2:77552592-77552611 | None:intergenic | 25.0% |
| ! | TACAAATTAGCACTTGAATT+GGG | - | chr5.2:77552145-77552164 | MS.gene030054:CDS | 25.0% |
| ! | TCATGAAATATTAATGGCTT+TGG | + | chr5.2:77552013-77552032 | None:intergenic | 25.0% |
| ! | TTACAAATTAGCACTTGAAT+TGG | - | chr5.2:77552144-77552163 | MS.gene030054:CDS | 25.0% |
| !! | AATGTACAAATTTTACTAGG+AGG | - | chr5.2:77552737-77552756 | MS.gene030054:CDS | 25.0% |
| !! | AATTCAAGTGCTAATTTGTA+AGG | + | chr5.2:77552145-77552164 | None:intergenic | 25.0% |
| !! | ATGTACAAATTTTACTAGGA+GGG | - | chr5.2:77552738-77552757 | MS.gene030054:CDS | 25.0% |
| !! | TCTTAATCTTCAAGTTTATG+AGG | - | chr5.2:77551321-77551340 | MS.gene030054:CDS | 25.0% |
| !!! | GTTAATCTCACTGTTTTTAT+TGG | + | chr5.2:77552355-77552374 | None:intergenic | 25.0% |
| AATGATGTGCTTAAGAAAAC+AGG | + | chr5.2:77552274-77552293 | None:intergenic | 30.0% | |
| ACAAACAAAACACCTTTGTT+TGG | + | chr5.2:77552226-77552245 | None:intergenic | 30.0% | |
| AGAAAACCTGATATTGGAAT+TGG | - | chr5.2:77551541-77551560 | MS.gene030054:CDS | 30.0% | |
| ATAAGTATATGATGCTTGCA+GGG | - | chr5.2:77552761-77552780 | MS.gene030054:CDS | 30.0% | |
| ATGCAAAAGTTACTAAGAGA+AGG | - | chr5.2:77552403-77552422 | MS.gene030054:intron | 30.0% | |
| CTATATGTTACTGCAGTTAA+AGG | + | chr5.2:77552304-77552323 | None:intergenic | 30.0% | |
| GCAATTTATAGAATCCTTCT+TGG | - | chr5.2:77552109-77552128 | MS.gene030054:CDS | 30.0% | |
| GGCATAGATCTAAAAATCAA+AGG | - | chr5.2:77552178-77552197 | MS.gene030054:intron | 30.0% | |
| TCATATTCAAATTCTTGGGA+AGG | - | chr5.2:77552624-77552643 | MS.gene030054:CDS | 30.0% | |
| TGAATATGATAACTTGGCTT+AGG | + | chr5.2:77552613-77552632 | None:intergenic | 30.0% | |
| ! | GTAGAGAACCATATTTGTTA+AGG | - | chr5.2:77552458-77552477 | MS.gene030054:intron | 30.0% |
| ! | TTTAAAACTTACCTTGCAAG+TGG | + | chr5.2:77551599-77551618 | None:intergenic | 30.0% |
| !! | TTGAAAGAGTATTTGAGTGT+CGG | - | chr5.2:77551409-77551428 | MS.gene030054:CDS | 30.0% |
| !! | TTTTGTTTGTATGCACACAT+AGG | - | chr5.2:77552236-77552255 | MS.gene030054:intron | 30.0% |
| !!! | AGAGCACTTAAAGAGTATTT+TGG | - | chr5.2:77551514-77551533 | MS.gene030054:CDS | 30.0% |
| !!! | TTTTTTTAAAGGGTTGGCAA+AGG | - | chr5.2:77551623-77551642 | MS.gene030054:CDS | 30.0% |
| AAGGAAGGAAAATACCAAGA+AGG | + | chr5.2:77552126-77552145 | None:intergenic | 35.0% | |
| AATCCTTCTACCATAACTCT+AGG | + | chr5.2:77551388-77551407 | None:intergenic | 35.0% | |
| ACAAGAGACAGAAAACAAGA+TGG | - | chr5.2:77552373-77552392 | MS.gene030054:intron | 35.0% | |
| GAAGTTCCAATTCCAATATC+AGG | + | chr5.2:77551550-77551569 | None:intergenic | 35.0% | |
| GATAAGTATATGATGCTTGC+AGG | - | chr5.2:77552760-77552779 | MS.gene030054:CDS | 35.0% | |
| GATTTAGTTGTTTGTCCTGA+AGG | - | chr5.2:77552427-77552446 | MS.gene030054:intron | 35.0% | |
| GGTGATAGAAAACCTGATAT+TGG | - | chr5.2:77551535-77551554 | MS.gene030054:CDS | 35.0% | |
| ! | ACTCATGTCAGCATGTTTTA+TGG | - | chr5.2:77552535-77552554 | MS.gene030054:CDS | 35.0% |
| ! | CAAGTGCTAATTTGTAAGGA+AGG | + | chr5.2:77552141-77552160 | None:intergenic | 35.0% |
| ! | CTCATGTCAGCATGTTTTAT+GGG | - | chr5.2:77552536-77552555 | MS.gene030054:CDS | 35.0% |
| ! | TAGTTCATTGTTTGCTGAGT+TGG | - | chr5.2:77552483-77552502 | MS.gene030054:intron | 35.0% |
| ! | TCTTTTCATTTCCACTTGCA+AGG | - | chr5.2:77551585-77551604 | MS.gene030054:CDS | 35.0% |
| !! | AACATGTAGAGTGTTGCTAA+GGG | + | chr5.2:77552061-77552080 | None:intergenic | 35.0% |
| AAACAGTTGGGTGATGCTTT+GGG | - | chr5.2:77552709-77552728 | MS.gene030054:CDS | 40.0% | |
| AAAGAACTTACATGTGCTGG+TGG | - | chr5.2:77552652-77552671 | MS.gene030054:CDS | 40.0% | |
| ACATGAGTATTCATTGCCAC+AGG | + | chr5.2:77552523-77552542 | None:intergenic | 40.0% | |
| ATGCACACATAGGACATTGT+TGG | - | chr5.2:77552246-77552265 | MS.gene030054:intron | 40.0% | |
| ATGTTCATGTGGCTACCAAT+TGG | - | chr5.2:77552076-77552095 | MS.gene030054:CDS | 40.0% | |
| CAACACTCTACATGTTCATG+TGG | - | chr5.2:77552065-77552084 | MS.gene030054:CDS | 40.0% | |
| CCAGCACATGTAAGTTCTTT+AGG | + | chr5.2:77552652-77552671 | None:intergenic | 40.0% | |
| CCTAAAGAACTTACATGTGC+TGG | - | chr5.2:77552649-77552668 | MS.gene030054:CDS | 40.0% | |
| TAGCACTTGAATTGGGAGTT+TGG | - | chr5.2:77552152-77552171 | MS.gene030054:intron | 40.0% | |
| TCCAAACTCAATCATGCCAA+GGG | - | chr5.2:77551979-77551998 | MS.gene030054:CDS | 40.0% | |
| TCTCTACATGTTGTTCCTTC+AGG | + | chr5.2:77552445-77552464 | None:intergenic | 40.0% | |
| TTCCTGTCATAATCATGCAG+AGG | + | chr5.2:77551924-77551943 | None:intergenic | 40.0% | |
| ! | TGTGTGAGTGTTGTAAACCT+GGG | - | chr5.2:77551732-77551751 | MS.gene030054:CDS | 40.0% |
| !! | ACTTTTGGTTGCTACTTCAC+TGG | - | chr5.2:77551457-77551476 | MS.gene030054:CDS | 40.0% |
| !! | GAACATGTAGAGTGTTGCTA+AGG | + | chr5.2:77552062-77552081 | None:intergenic | 40.0% |
| !!! | ACTGGTTTTCTCACTAGTTC+TGG | - | chr5.2:77551475-77551494 | MS.gene030054:CDS | 40.0% |
| !!! | TTGAGTGTCGGTGATGTTTT+AGG | - | chr5.2:77551421-77551440 | MS.gene030054:CDS | 40.0% |
| AACAGTTGGGTGATGCTTTG+GGG | - | chr5.2:77552710-77552729 | MS.gene030054:CDS | 45.0% | |
| ATGAGGTTCTTGCTTCAGCT+GGG | - | chr5.2:77551338-77551357 | MS.gene030054:CDS | 45.0% | |
| ATGATGCTTGCAGGGAATGA+AGG | - | chr5.2:77552769-77552788 | MS.gene030054:CDS | 45.0% | |
| CACAAGTGTGCCTAGAGTTA+TGG | - | chr5.2:77551375-77551394 | MS.gene030054:CDS | 45.0% | |
| CACCTCTGCATGATTATGAC+AGG | - | chr5.2:77551919-77551938 | MS.gene030054:CDS | 45.0% | |
| CTGTCATAATCATGCAGAGG+TGG | + | chr5.2:77551921-77551940 | None:intergenic | 45.0% | |
| CTTGAATTGGGAGTTTGGAG+TGG | - | chr5.2:77552157-77552176 | MS.gene030054:intron | 45.0% | |
| GAAACAGTTGGGTGATGCTT+TGG | - | chr5.2:77552708-77552727 | MS.gene030054:CDS | 45.0% | |
| GAAATCGAACTCAATACCCC+AGG | + | chr5.2:77551752-77551771 | None:intergenic | 45.0% | |
| GTCCAAACTCAATCATGCCA+AGG | - | chr5.2:77551978-77551997 | MS.gene030054:CDS | 45.0% | |
| GTGCCTAGAGTTATGGTAGA+AGG | - | chr5.2:77551382-77551401 | MS.gene030054:CDS | 45.0% | |
| TATGAGGTTCTTGCTTCAGC+TGG | - | chr5.2:77551337-77551356 | MS.gene030054:CDS | 45.0% | |
| TCCCTTGGCATGATTGAGTT+TGG | + | chr5.2:77551983-77552002 | None:intergenic | 45.0% | |
| TGATGCTTGCAGGGAATGAA+GGG | - | chr5.2:77552770-77552789 | MS.gene030054:CDS | 45.0% | |
| TTGGGTCTAGTGCAAGTAGT+TGG | - | chr5.2:77551700-77551719 | MS.gene030054:CDS | 45.0% | |
| ! | GGCACAGAGTTACACACTTT+TGG | - | chr5.2:77551442-77551461 | MS.gene030054:CDS | 45.0% |
| ! | GTGTGAGTGTTGTAAACCTG+GGG | - | chr5.2:77551733-77551752 | MS.gene030054:CDS | 45.0% |
| ! | GTGTGTGAGTGTTGTAAACC+TGG | - | chr5.2:77551731-77551750 | MS.gene030054:CDS | 45.0% |
| ! | TTTTATGGGACCACAGCTAG+CGG | - | chr5.2:77552550-77552569 | MS.gene030054:CDS | 45.0% |
| !! | AGCTAGCGGATTGAAGTGTT+TGG | - | chr5.2:77552564-77552583 | MS.gene030054:CDS | 45.0% |
| !! | GGCTTTGGATATTTGTCCCT+TGG | + | chr5.2:77551998-77552017 | None:intergenic | 45.0% |
| !! | TAGAGTGTTGCTAAGGGTGT+TGG | + | chr5.2:77552055-77552074 | None:intergenic | 45.0% |
| !!! | TTTAAACAATTTTTTTTAAA+GGG | - | chr5.2:77551613-77551632 | MS.gene030054:CDS | 5.0% |
| !!! | TTTTAAACAATTTTTTTTAA+AGG | - | chr5.2:77551612-77551631 | MS.gene030054:CDS | 5.0% |
| ACACTTCAATCCGCTAGCTG+TGG | + | chr5.2:77552563-77552582 | None:intergenic | 50.0% | |
| GGCTAATGAGATAGTGCCTG+TGG | - | chr5.2:77552504-77552523 | MS.gene030054:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 77551274 | 77552831 | 77551274 | ID=MS.gene030054 |
| chr5.2 | mRNA | 77551274 | 77552831 | 77551274 | ID=MS.gene030054.t1;Parent=MS.gene030054 |
| chr5.2 | exon | 77552499 | 77552831 | 77552499 | ID=MS.gene030054.t1.exon1;Parent=MS.gene030054.t1 |
| chr5.2 | CDS | 77552499 | 77552831 | 77552499 | ID=cds.MS.gene030054.t1;Parent=MS.gene030054.t1 |
| chr5.2 | exon | 77551274 | 77552164 | 77551274 | ID=MS.gene030054.t1.exon2;Parent=MS.gene030054.t1 |
| chr5.2 | CDS | 77551274 | 77552164 | 77551274 | ID=cds.MS.gene030054.t1;Parent=MS.gene030054.t1 |
| Gene Sequence |
| Protein sequence |
