AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03028

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03028.t1 MTR_1g088885 97.746 621 14 0 1 621 1 621 0.0 1252
MS.gene03028.t1 MTR_7g108290 78.738 602 118 7 1 595 1 599 0.0 969
MS.gene03028.t1 MTR_4g022330 47.727 572 273 9 30 591 28 583 4.14e-180 524
MS.gene03028.t1 MTR_7g073980 45.068 588 290 8 34 609 31 597 2.57e-168 494
MS.gene03028.t1 MTR_5g016060 41.512 648 307 17 13 621 16 630 4.78e-156 462
MS.gene03028.t1 MTR_4g095430 38.462 624 328 15 25 621 1 595 1.94e-135 409
MS.gene03028.t1 MTR_3g062540 36.174 622 317 15 20 621 7 568 5.83e-123 375
MS.gene03028.t1 MTR_5g016060 39.709 549 260 16 111 621 1 516 1.15e-117 360
MS.gene03028.t1 MTR_3g062540 36.239 585 294 14 56 621 2 526 8.52e-115 353
MS.gene03028.t1 MTR_4g093850 33.487 651 354 14 31 621 38 669 3.15e-113 353
MS.gene03028.t1 MTR_5g075640 34.223 637 319 15 20 621 8 579 4.28e-112 348
MS.gene03028.t1 MTR_2g009340 32.666 649 360 13 14 600 21 654 1.39e-109 345
MS.gene03028.t1 MTR_8g078900 33.498 606 311 9 38 572 22 606 4.35e-107 337
MS.gene03028.t1 MTR_8g078900 33.613 595 303 9 49 572 3 576 2.44e-105 332
MS.gene03028.t1 MTR_5g075640 34.333 600 295 14 56 621 2 536 3.55e-104 326
MS.gene03028.t1 MTR_8g090220 34.075 584 285 13 36 572 52 582 5.11e-103 326
MS.gene03028.t1 MTR_2g084595 34.007 594 329 12 34 587 21 591 7.16e-103 325
MS.gene03028.t1 MTR_1g094850 35.140 572 325 12 38 587 28 575 2.49e-101 321
MS.gene03028.t1 MTR_8g078900 34.799 546 284 8 78 572 42 566 8.42e-101 320
MS.gene03028.t1 MTR_1g064360 35.027 551 307 11 26 553 15 537 1.67e-100 317
MS.gene03028.t1 MTR_8g090220 36.364 495 246 10 36 495 52 512 6.73e-100 314
MS.gene03028.t1 MTR_2g018750 34.775 601 337 15 14 587 3 575 5.96e-99 315
MS.gene03028.t1 MTR_5g015790 37.029 478 265 9 34 494 25 483 7.06e-92 296
MS.gene03028.t1 MTR_1g106430 35.140 535 310 11 34 542 26 549 8.13e-92 296
MS.gene03028.t1 MTR_5g032780 37.288 531 271 14 18 503 12 525 5.54e-90 292
MS.gene03028.t1 MTR_1g014070 35.307 473 283 7 34 493 25 487 1.38e-87 285
MS.gene03028.t1 MTR_2g048390 35.920 451 245 9 26 444 15 453 2.94e-83 269
MS.gene03028.t1 MTR_4g093850 33.954 483 251 10 26 454 33 501 1.09e-81 267
MS.gene03028.t1 MTR_8g069330 36.232 483 269 10 39 503 29 490 6.68e-80 264
MS.gene03028.t1 MTR_4g134210 31.729 561 314 13 27 563 17 532 3.62e-77 257
MS.gene03028.t1 MTR_8g078900 32.819 454 247 7 38 444 22 464 2.27e-75 248
MS.gene03028.t1 MTR_8g078900 34.518 394 220 6 78 444 42 424 1.90e-69 231
MS.gene03028.t1 MTR_2g084595 33.183 443 247 8 34 444 21 446 1.58e-68 229
MS.gene03028.t1 MTR_1g082690 29.167 480 283 10 37 505 59 492 4.12e-67 229
MS.gene03028.t1 MTR_2g027410 30.943 488 274 11 27 492 17 463 2.41e-65 224
MS.gene03028.t1 MTR_4g011530 33.995 403 218 12 201 588 33 402 1.08e-62 214
MS.gene03028.t1 MTR_2g102730 34.133 375 196 9 210 572 24 359 2.13e-58 202
MS.gene03028.t1 MTR_2g027410 30.787 432 236 11 83 492 1 391 1.13e-54 194
MS.gene03028.t1 MTR_4g045767 26.460 582 353 15 39 590 7 543 1.63e-47 175
MS.gene03028.t1 MTR_4g074190 26.931 505 282 12 37 495 4 467 1.29e-42 161
MS.gene03028.t1 MTR_1g035720 25.336 596 314 20 39 577 6 527 3.96e-42 160
MS.gene03028.t1 MTR_1g105870 40.625 192 101 3 43 229 38 221 1.93e-40 148
MS.gene03028.t1 MTR_4g074190 26.739 460 254 10 78 495 3 421 8.13e-40 152
MS.gene03028.t1 MTR_4g074190 25.714 455 251 12 37 445 4 417 5.37e-32 129
MS.gene03028.t1 MTR_2g010890 25.986 431 264 8 102 515 1 393 3.69e-30 124
MS.gene03028.t1 MTR_2g048375 46.491 114 51 3 460 572 1 105 4.35e-22 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03028.t1 AT1G03010 69.531 640 170 7 1 621 1 634 0.0 875
MS.gene03028.t1 AT1G03010 69.787 609 159 7 32 621 5 607 0.0 828
MS.gene03028.t1 AT1G03010 69.787 609 159 7 32 621 31 633 0.0 828
MS.gene03028.t1 AT2G47860 59.690 645 226 10 1 621 1 635 0.0 750
MS.gene03028.t1 AT2G47860 57.635 668 226 11 1 621 1 658 0.0 737
MS.gene03028.t1 AT2G47860 58.779 524 186 8 121 621 1 517 0.0 582
MS.gene03028.t1 AT2G47860 58.779 524 186 8 121 621 1 517 0.0 582
MS.gene03028.t1 AT2G47860 60.352 454 160 6 1 444 1 444 0.0 545
MS.gene03028.t1 AT2G47860 57.442 477 160 7 1 444 1 467 0.0 532
MS.gene03028.t1 AT5G48800 45.565 575 285 7 23 591 28 580 1.77e-174 509
MS.gene03028.t1 AT3G08570 43.783 571 288 9 34 591 32 582 3.12e-152 452
MS.gene03028.t1 AT5G67385 39.370 635 328 12 13 621 1 604 1.24e-143 430
MS.gene03028.t1 AT3G08660 42.781 561 273 13 34 589 32 549 1.21e-142 427
MS.gene03028.t1 AT3G08660 42.293 532 259 13 63 589 1 489 1.42e-130 394
MS.gene03028.t1 AT5G67385 38.983 590 304 11 57 621 1 559 3.46e-129 391
MS.gene03028.t1 AT5G67385 38.983 590 304 11 57 621 1 559 3.46e-129 391
MS.gene03028.t1 AT5G67385 38.983 590 304 11 57 621 1 559 3.46e-129 391
MS.gene03028.t1 AT5G67385 38.983 590 304 11 57 621 1 559 3.46e-129 391
MS.gene03028.t1 AT1G30440 35.987 628 320 13 26 608 15 605 4.63e-118 366
MS.gene03028.t1 AT2G30520 34.928 627 333 15 22 621 15 593 1.32e-113 352
MS.gene03028.t1 AT5G03250 35.462 595 317 16 26 588 15 574 3.98e-109 340
MS.gene03028.t1 AT2G30520 34.628 592 313 14 56 621 2 545 8.11e-104 325
MS.gene03028.t1 AT2G30520 34.628 592 313 14 56 621 2 545 8.11e-104 325
MS.gene03028.t1 AT5G13600 37.456 566 278 16 39 572 29 550 1.19e-103 326
MS.gene03028.t1 AT3G49970 34.281 598 279 15 49 621 7 515 6.72e-101 317
MS.gene03028.t1 AT3G49970 34.281 598 279 15 49 621 7 515 6.72e-101 317
MS.gene03028.t1 AT2G14820 33.886 543 321 11 34 555 25 550 1.86e-96 309
MS.gene03028.t1 AT2G14820 33.886 543 321 11 34 555 25 550 1.86e-96 309
MS.gene03028.t1 AT5G66560 32.909 629 299 12 38 572 21 620 1.03e-94 305
MS.gene03028.t1 AT3G44820 31.833 600 328 12 26 572 12 583 1.70e-94 304
MS.gene03028.t1 AT3G08660 40.284 422 216 10 34 450 32 422 4.94e-94 296
MS.gene03028.t1 AT3G50840 33.100 571 311 9 22 572 2 521 2.84e-93 298
MS.gene03028.t1 AT5G66560 32.848 618 292 12 49 572 3 591 1.33e-92 299
MS.gene03028.t1 AT5G10250 32.642 579 293 16 31 569 44 565 5.07e-92 297
MS.gene03028.t1 AT5G66560 34.679 545 277 9 78 572 66 581 4.67e-91 295
MS.gene03028.t1 AT5G10250 32.574 571 289 16 31 569 44 550 3.81e-89 289
MS.gene03028.t1 AT1G67900 36.149 509 276 8 34 505 24 520 7.78e-88 286
MS.gene03028.t1 AT1G67900 36.149 509 276 8 34 505 24 520 7.78e-88 286
MS.gene03028.t1 AT1G67900 36.149 509 276 8 34 505 24 520 7.78e-88 286
MS.gene03028.t1 AT1G67900 36.149 509 276 8 34 505 24 520 7.78e-88 286
MS.gene03028.t1 AT1G67900 36.149 509 276 8 34 505 24 520 7.78e-88 286
MS.gene03028.t1 AT1G67900 36.149 509 276 8 34 505 24 520 7.78e-88 286
MS.gene03028.t1 AT4G31820 35.699 479 265 9 29 494 20 468 1.36e-87 284
MS.gene03028.t1 AT3G50840 32.836 536 289 9 57 572 1 485 2.00e-84 274
MS.gene03028.t1 AT3G50840 32.836 536 289 9 57 572 1 485 2.00e-84 274
MS.gene03028.t1 AT5G67440 35.639 477 266 11 34 494 25 476 9.48e-83 271
MS.gene03028.t1 AT5G67440 35.639 477 266 11 34 494 25 476 9.48e-83 271
MS.gene03028.t1 AT4G37590 34.356 489 257 13 34 501 25 470 5.70e-81 266
MS.gene03028.t1 AT5G67440 35.714 462 256 11 49 494 3 439 3.92e-79 261
MS.gene03028.t1 AT2G23050 33.605 491 261 11 24 501 19 457 1.06e-78 258
MS.gene03028.t1 AT3G26490 34.866 522 272 13 19 494 8 507 2.50e-78 259
MS.gene03028.t1 AT3G26490 34.866 522 272 13 19 494 8 507 2.50e-78 259
MS.gene03028.t1 AT3G26490 34.866 522 272 13 19 494 8 507 2.50e-78 259
MS.gene03028.t1 AT5G03250 33.400 497 267 14 121 588 1 462 9.64e-78 255
MS.gene03028.t1 AT5G47800 32.520 492 294 9 33 509 23 491 1.09e-74 249
MS.gene03028.t1 AT5G47800 32.520 492 294 9 33 509 23 491 1.09e-74 249
MS.gene03028.t1 AT5G47800 32.520 492 294 9 33 509 23 491 1.09e-74 249
MS.gene03028.t1 AT4G31820 34.831 445 247 9 63 494 1 415 3.82e-74 247
MS.gene03028.t1 AT5G47800 32.394 497 288 9 33 509 136 604 1.64e-73 249
MS.gene03028.t1 AT5G66560 32.225 481 231 10 38 444 21 480 2.42e-63 217
MS.gene03028.t1 AT1G52770 33.421 380 206 5 210 572 28 377 1.97e-60 208
MS.gene03028.t1 AT3G26490 32.914 477 252 13 19 449 8 462 4.81e-59 206
MS.gene03028.t1 AT5G64330 36.264 364 199 10 265 606 371 723 1.01e-55 202
MS.gene03028.t1 AT5G64330 34.137 249 128 2 34 251 50 293 1.64e-43 167
MS.gene03028.t1 AT2G23050 32.391 389 207 9 121 501 1 341 2.35e-53 187
MS.gene03028.t1 AT3G19850 27.195 467 277 6 60 493 28 464 1.35e-52 189
MS.gene03028.t1 AT3G15570 35.548 301 147 5 216 495 35 309 1.08e-50 182
MS.gene03028.t1 AT5G64330 43.320 247 121 5 265 499 312 551 2.59e-50 184
MS.gene03028.t1 AT5G64330 32.479 234 122 2 49 251 6 234 1.58e-37 148
MS.gene03028.t1 AT5G64330 43.320 247 121 5 265 499 371 610 4.11e-50 184
MS.gene03028.t1 AT5G64330 34.137 249 128 2 34 251 50 293 9.35e-44 166
MS.gene03028.t1 AT5G48130 28.423 482 285 12 34 499 37 474 1.50e-49 182
MS.gene03028.t1 AT1G50280 27.572 486 295 11 32 488 3 460 7.02e-46 170
MS.gene03028.t1 AT1G50280 27.790 439 268 9 74 488 14 427 7.04e-44 164
MS.gene03028.t1 AT3G22104 28.200 461 270 10 36 479 4 420 2.87e-41 157
MS.gene03028.t1 AT3G03510 27.053 414 239 10 90 497 8 364 8.07e-37 143
MS.gene03028.t1 AT5G17580 25.996 477 302 11 38 499 22 462 2.18e-34 138
MS.gene03028.t1 AT5G17580 25.996 477 302 11 38 499 7 447 2.97e-34 137
MS.gene03028.t1 AT3G22104 27.132 387 224 7 107 479 3 345 5.08e-30 123
MS.gene03028.t1 AT3G22104 27.132 387 224 7 107 479 3 345 5.08e-30 123
MS.gene03028.t1 AT3G22104 27.132 387 224 7 107 479 3 345 5.08e-30 123
MS.gene03028.t1 AT3G49900 35.294 153 88 5 30 176 58 205 1.76e-12 70.5
MS.gene03028.t1 AT3G49900 35.294 153 88 5 30 176 58 205 1.89e-12 70.5

Find 100 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTGTCATTTCTAGAAAA+TGG 0.095087 1.3:-62249869 None:intergenic
CACCATTCTGAAGGTGTTTC+AGG 0.141106 1.3:-62250128 None:intergenic
GAATTTAAGCCTAGCATTTC+AGG 0.187693 1.3:+62247615 MS.gene03028:CDS
ATTAAGCTTACTTAATTTCT+TGG 0.230580 1.3:-62251512 None:intergenic
CGCTCTGACTCCTTTATGTT+TGG 0.234991 1.3:-62251097 None:intergenic
AAGATAATTGTCAAGCAATT+TGG 0.245136 1.3:-62250705 None:intergenic
AACTTTGATGGAAACAAGTT+TGG 0.246026 1.3:-62250746 None:intergenic
TACAGTTTCCTCTAGTTTCT+AGG 0.257189 1.3:+62249676 MS.gene03028:intron
GTTTCGGATGAATGGTATTA+AGG 0.258143 1.3:+62251540 MS.gene03028:CDS
TTTCTAGGAGTGGAAGAATT+AGG 0.260242 1.3:+62249691 MS.gene03028:CDS
TACTTCTTGTAGATCTGATT+TGG 0.278731 1.3:+62250436 MS.gene03028:CDS
TTAAGAATTGAGCTTTGTTT+TGG 0.278917 1.3:-62250677 None:intergenic
AGGCTAATCTCTTCAGAAAT+TGG 0.287496 1.3:-62250002 None:intergenic
ATTGTGTCCTCCTCCGTTCA+TGG 0.295779 1.3:-62251254 None:intergenic
ACTGAATGACGCCTTCTCTT+TGG 0.299205 1.3:-62251598 None:intergenic
TGCAAAGAGCAACTTACTTC+TGG 0.313546 1.3:+62250062 MS.gene03028:CDS
GCAAGTGAAATGAACTTTGA+TGG 0.347009 1.3:-62250758 None:intergenic
GAGAATGAGACTCACTGATT+TGG 0.349387 1.3:+62251417 MS.gene03028:CDS
TTCTGTCATTTCTAGAAAAT+GGG 0.365097 1.3:-62249868 None:intergenic
AGTGATCTTAGCATCGAAAT+AGG 0.383984 1.3:+62249398 MS.gene03028:CDS
CTTACAATTCGCGCATGATC+AGG 0.393723 1.3:-62250791 None:intergenic
AGCAGTTGATATCTTCCTTA+AGG 0.396187 1.3:+62250829 MS.gene03028:CDS
AAAACAAAGCTCAATTCTTA+AGG 0.416708 1.3:+62250679 MS.gene03028:CDS
TTTCAGTTTCATCTCTCATT+CGG 0.419572 1.3:-62250625 None:intergenic
TTAATCTTGATTTCTTCAAA+AGG 0.420944 1.3:+62250171 MS.gene03028:CDS
TCAGGCAGTGGTGCAGGAAG+TGG 0.423415 1.3:+62251319 MS.gene03028:CDS
CTAGCTGCAAAATTCTGTTA+TGG 0.424115 1.3:+62249795 MS.gene03028:CDS
GTAAGCTTAATGCATTGTTT+CGG 0.426324 1.3:+62251524 MS.gene03028:CDS
GGTCAATTCCCTCAACGTTC+AGG 0.427741 1.3:+62251301 MS.gene03028:CDS
ACTTGTACTGCCATTTGAAC+TGG 0.430941 1.3:-62251199 None:intergenic
AATGCATTGTTTCGGATGAA+TGG 0.434128 1.3:+62251532 MS.gene03028:CDS
CTACTCTTTGGTGGACTAAA+CGG 0.434895 1.3:+62251280 MS.gene03028:CDS
AAACTTGAGAGAAAAGCTAT+TGG 0.442825 1.3:-62250383 None:intergenic
GGACACAATCAACTACTCTT+TGG 0.443826 1.3:+62251268 MS.gene03028:CDS
TAAGGCGAATGGCGTTGGTT+CGG 0.445184 1.3:+62251558 MS.gene03028:CDS
AATGAGAGATGAAACTGAAA+TGG 0.445715 1.3:+62250628 MS.gene03028:CDS
CGTTCATGGCGTTGCGAAGA+CGG 0.447206 1.3:-62251240 None:intergenic
TAATCTTGATTTCTTCAAAA+GGG 0.457630 1.3:+62250172 MS.gene03028:CDS
TGACGCCTTCTCTTTGGAAA+AGG 0.458709 1.3:-62251592 None:intergenic
ACTTTGATGGAAACAAGTTT+GGG 0.459297 1.3:-62250745 None:intergenic
ATAGGTTCATCCAAACATAA+AGG 0.461835 1.3:+62251087 MS.gene03028:intron
TGAGAGACTACCAGTTCAAA+TGG 0.462996 1.3:+62251189 MS.gene03028:CDS
TTCGTCCAAGCTCAAGCATA+AGG 0.469711 1.3:+62247649 MS.gene03028:CDS
TGTCTCTCTTAGATATGATT+CGG 0.475689 1.3:-62249922 None:intergenic
CAACGTTCAGGCAGTGGTGC+AGG 0.480962 1.3:+62251313 MS.gene03028:CDS
TCACTAGAGACATCAGATAT+CGG 0.481120 1.3:-62249380 None:intergenic
TTCCCTCAACGTTCAGGCAG+TGG 0.490228 1.3:+62251307 MS.gene03028:CDS
TTATCTGCAATGAAATCAAA+GGG 0.493791 1.3:+62250197 MS.gene03028:CDS
ACTGATGCATAATTATCTCT+TGG 0.494221 1.3:-62251352 None:intergenic
CACCACTGCCTGAACGTTGA+GGG 0.499411 1.3:-62251309 None:intergenic
GATTTAAAGAGCTTATTAGC+AGG 0.501395 1.3:-62251484 None:intergenic
AGAAATGACAGAAGAATTCG+CGG 0.503937 1.3:+62249878 MS.gene03028:CDS
TTTATCTGCAATGAAATCAA+AGG 0.504554 1.3:+62250196 MS.gene03028:CDS
GCATCTTAGCATAGCAACAT+TGG 0.504960 1.3:-62249841 None:intergenic
GGTATTAAGGCGAATGGCGT+TGG 0.505217 1.3:+62251553 MS.gene03028:CDS
ATCTGATTTGGAGAGAAGGA+TGG 0.507364 1.3:+62250448 MS.gene03028:CDS
AATTTAAGCCTAGCATTTCA+GGG 0.512965 1.3:+62247616 MS.gene03028:CDS
CATTGATTAATCTGTTAACA+AGG 0.513704 1.3:-62250022 None:intergenic
GCATGCCTTATGCTTGAGCT+TGG 0.516333 1.3:-62247654 None:intergenic
AACTCAATCAAGGAAAAGTC+AGG 0.517070 1.3:+62250358 MS.gene03028:CDS
GTTTACTACCAACTCAATCA+AGG 0.523450 1.3:+62250348 MS.gene03028:CDS
TCCACACCACCTGGTACACT+AGG 0.525740 1.3:-62249762 None:intergenic
ATAAGTTTCCCTAGTGTACC+AGG 0.527998 1.3:+62249753 MS.gene03028:CDS
ATGGCGTTGGTTCGGAGAGT+CGG 0.532835 1.3:+62251566 MS.gene03028:CDS
CCCTAGTGTACCAGGTGGTG+TGG 0.534693 1.3:+62249761 MS.gene03028:CDS
TTACTTCGAGTTTCAGCTCA+CGG 0.538154 1.3:-62251387 None:intergenic
GAATGTCTTCAAGAATTGCT+TGG 0.538738 1.3:-62250484 None:intergenic
TAACTTGGATGAGGAGGATG+AGG 0.538954 1.3:+62250595 MS.gene03028:CDS
TAAAGGAGTCAGAGCGATAC+CGG 0.540199 1.3:+62251104 MS.gene03028:CDS
GCATAAGGCATGCCACTGAA+TGG 0.541197 1.3:+62247664 MS.gene03028:CDS
TGAAACACCTTCAGAATGGT+GGG 0.545838 1.3:+62250130 MS.gene03028:CDS
CACAATCAACTACTCTTTGG+TGG 0.547927 1.3:+62251271 MS.gene03028:CDS
CTCTTCTTCCCTGAAATGCT+AGG 0.548210 1.3:-62247624 None:intergenic
TCAAATGCCTCCACACCACC+TGG 0.560746 1.3:-62249771 None:intergenic
TTTCCTCTAGTTTCTAGGAG+TGG 0.568812 1.3:+62249681 MS.gene03028:CDS
CGCAACGCCATGAACGGAGG+AGG 0.569820 1.3:+62251247 MS.gene03028:CDS
CTGAAACACCTTCAGAATGG+TGG 0.572260 1.3:+62250129 MS.gene03028:CDS
GTAGATCTGATTTGGAGAGA+AGG 0.572354 1.3:+62250444 MS.gene03028:CDS
CGTCTTCGCAACGCCATGAA+CGG 0.573152 1.3:+62251241 MS.gene03028:CDS
TCTGATTTGGAGAGAAGGAT+GGG 0.575149 1.3:+62250449 MS.gene03028:CDS
TAGTGTACCAGGTGGTGTGG+AGG 0.580110 1.3:+62249764 MS.gene03028:CDS
AACCTGAAACACCTTCAGAA+TGG 0.581115 1.3:+62250126 MS.gene03028:CDS
TTCATGCTTTGCCCTTCACA+AGG 0.582223 1.3:+62249424 MS.gene03028:CDS
TAATCTCTTCAGAAATTGGT+AGG 0.585593 1.3:-62249998 None:intergenic
CATGCGCGAATTGTAAGCGA+TGG 0.589747 1.3:+62250797 MS.gene03028:CDS
AATTCTCTTCAAGTAGTCAA+AGG 0.596034 1.3:+62250266 MS.gene03028:CDS
ATGAATGGTATTAAGGCGAA+TGG 0.597917 1.3:+62251547 MS.gene03028:CDS
TATCATAGATAGTACTGTTG+TGG 0.598221 1.3:-62250538 None:intergenic
GCACCACTGCCTGAACGTTG+AGG 0.599275 1.3:-62251310 None:intergenic
CTTCCACTCCTAGAAACTAG+AGG 0.616740 1.3:-62249684 None:intergenic
AACAGAATATTACCATTCAG+TGG 0.623909 1.3:-62247676 None:intergenic
AGTTTCACAACGGTGAAGAA+CGG 0.627577 1.3:-62249973 None:intergenic
AACTAGTTATTGTTTCAACA+AGG 0.630313 1.3:-62250328 None:intergenic
CCACACCACCTGGTACACTA+GGG 0.639625 1.3:-62249761 None:intergenic
CTTCGCAACGCCATGAACGG+AGG 0.645261 1.3:+62251244 MS.gene03028:CDS
GAAACACCTTCAGAATGGTG+GGG 0.659150 1.3:+62250131 MS.gene03028:CDS
ATGATACAGACTCAATTGTG+AGG 0.686110 1.3:+62250555 MS.gene03028:CDS
GAAATGGGAGTTGTCACTGT+AGG 0.693523 1.3:+62247591 None:intergenic
TTGGTAGGAGAGTTTCACAA+CGG 0.732412 1.3:-62249983 None:intergenic
AGTTTCCCTAGTGTACCAGG+TGG 0.760455 1.3:+62249756 MS.gene03028:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAGAAAGAAAAAAAAA+TGG - chr1.3:62249604-62249623 None:intergenic 10.0%
!! AAATTCTGTATTTATTGAAT+TGG + chr1.3:62249084-62249103 MS.gene03028:intron 15.0%
!! AATTCTGTATTTATTGAATT+GGG + chr1.3:62249085-62249104 MS.gene03028:intron 15.0%
!! CTTAAAGTTTATATTATAGT+GGG - chr1.3:62247929-62247948 None:intergenic 15.0%
!! TAAAATTCATTGATAAGAAA+GGG - chr1.3:62248786-62248805 None:intergenic 15.0%
!! TATTGTAGAATATGTTATTA+TGG - chr1.3:62248855-62248874 None:intergenic 15.0%
!! TCTTAAAGTTTATATTATAG+TGG - chr1.3:62247930-62247949 None:intergenic 15.0%
!!! TTATTTTGATATAAACTTGT+TGG - chr1.3:62250515-62250534 None:intergenic 15.0%
!! AATAAATACAGAATTTGAGT+GGG - chr1.3:62249080-62249099 None:intergenic 20.0%
!! AATGTACTATTTAATGTACA+TGG + chr1.3:62248317-62248336 MS.gene03028:intron 20.0%
!! ATTAAGCTTACTTAATTTCT+TGG - chr1.3:62251515-62251534 None:intergenic 20.0%
!! CATCAATGATTTAGATTAAT+GGG + chr1.3:62248808-62248827 MS.gene03028:intron 20.0%
!! GAAAATTCAATATAAAGTAG+TGG - chr1.3:62249314-62249333 None:intergenic 20.0%
!! GTAAAATTCATTGATAAGAA+AGG - chr1.3:62248787-62248806 None:intergenic 20.0%
!! TAATCTTGATTTCTTCAAAA+GGG + chr1.3:62250172-62250191 MS.gene03028:CDS 20.0%
!! TATACAGTAACATATAAGAA+AGG - chr1.3:62249466-62249485 None:intergenic 20.0%
!! TATATGCAATTTAATGTACA+AGG - chr1.3:62249194-62249213 None:intergenic 20.0%
!! TATTGTCATATTGATGTTTA+AGG - chr1.3:62248742-62248761 None:intergenic 20.0%
!! TCATCAATGATTTAGATTAA+TGG + chr1.3:62248807-62248826 MS.gene03028:intron 20.0%
!! TTAATCTTGATTTCTTCAAA+AGG + chr1.3:62250171-62250190 MS.gene03028:CDS 20.0%
!! TTGTATTAATTGTAGAATGT+AGG - chr1.3:62248073-62248092 None:intergenic 20.0%
!!! AGAATTTTTGAAGAAACAAA+GGG + chr1.3:62250304-62250323 MS.gene03028:CDS 20.0%
!!! CTGTTTTTACTATTCAATTT+TGG + chr1.3:62247707-62247726 MS.gene03028:intron 20.0%
!!! TAGAATTTTTGAAGAAACAA+AGG + chr1.3:62250303-62250322 MS.gene03028:CDS 20.0%
!!! TGATTTTAGAAGGAAAATTA+TGG - chr1.3:62250103-62250122 None:intergenic 20.0%
!!! TTTGGTTTTATTTGAATGTT+TGG + chr1.3:62247725-62247744 MS.gene03028:intron 20.0%
!!! TTTTTCCATTTTTCTTAACT+TGG + chr1.3:62250580-62250599 MS.gene03028:CDS 20.0%
! AAAACAAAGCTCAATTCTTA+AGG + chr1.3:62250679-62250698 MS.gene03028:CDS 25.0%
! AAAACTGATCTAATGAGTAA+TGG + chr1.3:62247903-62247922 MS.gene03028:intron 25.0%
! AACTAGTTATTGTTTCAACA+AGG - chr1.3:62250331-62250350 None:intergenic 25.0%
! AAGATAATTGTCAAGCAATT+TGG - chr1.3:62250708-62250727 None:intergenic 25.0%
! AATTGCAGACAAATGTTAAT+TGG - chr1.3:62248613-62248632 None:intergenic 25.0%
! AATTGGATTCAAATTCTCTA+AGG + chr1.3:62248018-62248037 MS.gene03028:intron 25.0%
! ATAGAGTTTCTCATCTAATT+TGG + chr1.3:62248375-62248394 MS.gene03028:intron 25.0%
! CAATAAATACAGAATTTGAG+TGG - chr1.3:62249081-62249100 None:intergenic 25.0%
! CACGTATGTTTATTATCTTT+AGG + chr1.3:62248636-62248655 MS.gene03028:intron 25.0%
! GACTTAAATGGATAGAAATT+AGG + chr1.3:62247870-62247889 MS.gene03028:intron 25.0%
! TAAGTCTTTAACATTACCTT+AGG - chr1.3:62249050-62249069 None:intergenic 25.0%
! TACCGTTTAAACATTGAAAT+TGG + chr1.3:62248466-62248485 MS.gene03028:intron 25.0%
! TCTCTAATATAATTGCACTT+TGG + chr1.3:62249260-62249279 MS.gene03028:intron 25.0%
! TGCCAATTTCAATGTTTAAA+CGG - chr1.3:62248471-62248490 None:intergenic 25.0%
! TTATCTGCAATGAAATCAAA+GGG + chr1.3:62250197-62250216 MS.gene03028:CDS 25.0%
! TTTATCTGCAATGAAATCAA+AGG + chr1.3:62250196-62250215 MS.gene03028:CDS 25.0%
!! CATTGATTAATCTGTTAACA+AGG - chr1.3:62250025-62250044 None:intergenic 25.0%
!! CCAAAATGTTTTCTTATAGT+CGG - chr1.3:62248709-62248728 None:intergenic 25.0%
!! CTTTTAGATATCAAATTGTC+CGG - chr1.3:62250901-62250920 None:intergenic 25.0%
!! TTCTGTCATTTCTAGAAAAT+GGG - chr1.3:62249871-62249890 None:intergenic 25.0%
!! TTTTTATAGGGAAATGTTAG+CGG - chr1.3:62249021-62249040 None:intergenic 25.0%
!!! AAAATGGAGCATTATTTTCA+TGG - chr1.3:62249588-62249607 None:intergenic 25.0%
!!! CTTAGGCACTATTTTTTATA+GGG - chr1.3:62249033-62249052 None:intergenic 25.0%
!!! GGTTTTATCAATTCTCATTA+AGG - chr1.3:62249567-62249586 None:intergenic 25.0%
!!! GTAGATTTTGGTCTAATAAT+TGG + chr1.3:62248001-62248020 MS.gene03028:intron 25.0%
!!! TGTTTTTTTTACCTTGTGAA+GGG - chr1.3:62249438-62249457 None:intergenic 25.0%
!!! TTAAGAATTGAGCTTTGTTT+TGG - chr1.3:62250680-62250699 None:intergenic 25.0%
!!! TTACTTTGTTTTTCTGTTTG+TGG + chr1.3:62249141-62249160 MS.gene03028:intron 25.0%
!!! TTGTTTTTTTTACCTTGTGA+AGG - chr1.3:62249439-62249458 None:intergenic 25.0%
AAAAATCACCCTAATGTATC+CGG - chr1.3:62247816-62247835 None:intergenic 30.0%
AAACTTGAGAGAAAAGCTAT+TGG - chr1.3:62250386-62250405 None:intergenic 30.0%
AACAGAATATTACCATTCAG+TGG - chr1.3:62247679-62247698 None:intergenic 30.0%
AACTTTGATGGAAACAAGTT+TGG - chr1.3:62250749-62250768 None:intergenic 30.0%
AATGAGAGATGAAACTGAAA+TGG + chr1.3:62250628-62250647 MS.gene03028:CDS 30.0%
AATTCTCTTCAAGTAGTCAA+AGG + chr1.3:62250266-62250285 MS.gene03028:CDS 30.0%
AATTTAAGCCTAGCATTTCA+GGG + chr1.3:62247616-62247635 MS.gene03028:CDS 30.0%
ACTGATGCATAATTATCTCT+TGG - chr1.3:62251355-62251374 None:intergenic 30.0%
ACTTTGATGGAAACAAGTTT+GGG - chr1.3:62250748-62250767 None:intergenic 30.0%
ATAATTGCATATGGTAGACA+TGG - chr1.3:62249336-62249355 None:intergenic 30.0%
ATAGGTTCATCCAAACATAA+AGG + chr1.3:62251087-62251106 MS.gene03028:intron 30.0%
ATCTTCACTTTATGATTGTC+TGG + chr1.3:62250858-62250877 MS.gene03028:intron 30.0%
ATGAGTTTGTAGAATCATGT+CGG + chr1.3:62247754-62247773 MS.gene03028:intron 30.0%
ATGATTCTACAAACTCATGT+CGG - chr1.3:62247752-62247771 None:intergenic 30.0%
CCTATAAAAAATAGTGCCTA+AGG + chr1.3:62249031-62249050 MS.gene03028:intron 30.0%
CTCATCCAAGTTAAGAAAAA+TGG - chr1.3:62250588-62250607 None:intergenic 30.0%
GATTTAAAGAGCTTATTAGC+AGG - chr1.3:62251487-62251506 None:intergenic 30.0%
GGGAGAAAAAAATTGTTAAC+AGG - chr1.3:62248985-62249004 None:intergenic 30.0%
GTAAGCTTAATGCATTGTTT+CGG + chr1.3:62251524-62251543 MS.gene03028:CDS 30.0%
TAATCTCTTCAGAAATTGGT+AGG - chr1.3:62250001-62250020 None:intergenic 30.0%
TACTTCTTGTAGATCTGATT+TGG + chr1.3:62250436-62250455 MS.gene03028:CDS 30.0%
TATCATAGATAGTACTGTTG+TGG - chr1.3:62250541-62250560 None:intergenic 30.0%
TCAATATGACAATACTTGTG+TGG + chr1.3:62248748-62248767 MS.gene03028:intron 30.0%
TCATAACCTATGCAAACTTA+TGG + chr1.3:62248407-62248426 MS.gene03028:intron 30.0%
TGCAGCATGTATATGATATT+AGG - chr1.3:62249224-62249243 None:intergenic 30.0%
TGTCTCTCTTAGATATGATT+CGG - chr1.3:62249925-62249944 None:intergenic 30.0%
TTAGACCAAAATCTACTTCT+AGG - chr1.3:62247997-62248016 None:intergenic 30.0%
TTCATTGATAAGAAAGGGAA+AGG - chr1.3:62248781-62248800 None:intergenic 30.0%
TTTCAGTTTCATCTCTCATT+CGG - chr1.3:62250628-62250647 None:intergenic 30.0%
TTTCTAATTGAAGACGTGTT+TGG - chr1.3:62248345-62248364 None:intergenic 30.0%
! ATGCTTCTTGTGATAGTTTT+TGG - chr1.3:62251150-62251169 None:intergenic 30.0%
! ATGTGATAATGACAATACAG+AGG - chr1.3:62247973-62247992 None:intergenic 30.0%
! CCGACTATAAGAAAACATTT+TGG + chr1.3:62248706-62248725 MS.gene03028:intron 30.0%
! CTTCTGTCATTTCTAGAAAA+TGG - chr1.3:62249872-62249891 None:intergenic 30.0%
! GATTTTGTACTTCTTGTCAT+AGG + chr1.3:62251069-62251088 MS.gene03028:intron 30.0%
! GGAATTTTCATAAAAGACGT+GGG - chr1.3:62248592-62248611 None:intergenic 30.0%
! TCAGGTTCAATGATTTTAGA+AGG - chr1.3:62250113-62250132 None:intergenic 30.0%
! TGGAATTTTCATAAAAGACG+TGG - chr1.3:62248593-62248612 None:intergenic 30.0%
! TGTGATAATGACAATACAGA+GGG - chr1.3:62247972-62247991 None:intergenic 30.0%
! TTAGCGGTTAGTTAGTTAAA+GGG - chr1.3:62249005-62249024 None:intergenic 30.0%
!! CATTTTTCTTAACTTGGATG+AGG + chr1.3:62250586-62250605 MS.gene03028:CDS 30.0%
!!! CCTTAGGCACTATTTTTTAT+AGG - chr1.3:62249034-62249053 None:intergenic 30.0%
!!! TGATAGTTTTTGGCAATCTA+TGG - chr1.3:62251140-62251159 None:intergenic 30.0%
AAAAGAAAAAGTTTCCCAGC+TGG - chr1.3:62248126-62248145 None:intergenic 35.0%
AACCTATGCAAACTTATGGT+AGG + chr1.3:62248411-62248430 MS.gene03028:intron 35.0%
AACTCAATCAAGGAAAAGTC+AGG + chr1.3:62250358-62250377 MS.gene03028:CDS 35.0%
AATGCATTGTTTCGGATGAA+TGG + chr1.3:62251532-62251551 MS.gene03028:CDS 35.0%
ACATAGTTAACAGACTCACA+AGG + chr1.3:62250974-62250993 MS.gene03028:intron 35.0%
AGAAATGACAGAAGAATTCG+CGG + chr1.3:62249878-62249897 MS.gene03028:CDS 35.0%
AGGCTAATCTCTTCAGAAAT+TGG - chr1.3:62250005-62250024 None:intergenic 35.0%
AGTGAAGATTGCTTACCTTA+AGG - chr1.3:62250847-62250866 None:intergenic 35.0%
ATCTTTAGGTAGCCTCTATA+AGG + chr1.3:62248650-62248669 MS.gene03028:intron 35.0%
ATGAATGGTATTAAGGCGAA+TGG + chr1.3:62251547-62251566 MS.gene03028:CDS 35.0%
ATGATACAGACTCAATTGTG+AGG + chr1.3:62250555-62250574 MS.gene03028:CDS 35.0%
ATGTTTAAACGGTACCATGA+TGG - chr1.3:62248460-62248479 None:intergenic 35.0%
CCATATGCAATTATTCAGCT+AGG + chr1.3:62249342-62249361 MS.gene03028:intron 35.0%
CCTAGCTGAATAATTGCATA+TGG - chr1.3:62249345-62249364 None:intergenic 35.0%
CTAGCTGCAAAATTCTGTTA+TGG + chr1.3:62249795-62249814 MS.gene03028:CDS 35.0%
CTTCAGAATCAAATGGGAAA+AGG - chr1.3:62248100-62248119 None:intergenic 35.0%
GAATGTCTTCAAGAATTGCT+TGG - chr1.3:62250487-62250506 None:intergenic 35.0%
GAATTTAAGCCTAGCATTTC+AGG + chr1.3:62247615-62247634 MS.gene03028:CDS 35.0%
GAGTTTAAGAAGGAGGTTTA+GGG + chr1.3:62248953-62248972 MS.gene03028:intron 35.0%
GCAAGTGAAATGAACTTTGA+TGG - chr1.3:62250761-62250780 None:intergenic 35.0%
GGTAAAACTCATGCATATGT+TGG - chr1.3:62249546-62249565 None:intergenic 35.0%
GTAACCATATAAGTCTCTGA+AGG + chr1.3:62248897-62248916 MS.gene03028:intron 35.0%
GTTTACTACCAACTCAATCA+AGG + chr1.3:62250348-62250367 MS.gene03028:CDS 35.0%
GTTTCGGATGAATGGTATTA+AGG + chr1.3:62251540-62251559 MS.gene03028:CDS 35.0%
TAAGGCTATGTTAGTAGAGT+TGG + chr1.3:62248668-62248687 MS.gene03028:intron 35.0%
TACACCTTCAGAGACTTATA+TGG - chr1.3:62248904-62248923 None:intergenic 35.0%
TCACTAGAGACATCAGATAT+CGG - chr1.3:62249383-62249402 None:intergenic 35.0%
TGCTGCATAAGACTATTCTA+AGG + chr1.3:62249237-62249256 MS.gene03028:intron 35.0%
TGGTACCTTCAGAATCAAAT+GGG - chr1.3:62248106-62248125 None:intergenic 35.0%
TTCCTACCATAAGTTTGCAT+AGG - chr1.3:62248416-62248435 None:intergenic 35.0%
! ACATGCCTAGAAGTAGATTT+TGG + chr1.3:62247989-62248008 MS.gene03028:intron 35.0%
! AGCAGTTGATATCTTCCTTA+AGG + chr1.3:62250829-62250848 MS.gene03028:CDS 35.0%
! AGTGATCTTAGCATCGAAAT+AGG + chr1.3:62249398-62249417 MS.gene03028:CDS 35.0%
! CTTTTCCCATTTGATTCTGA+AGG + chr1.3:62248098-62248117 MS.gene03028:intron 35.0%
! GTTAGCGGTTAGTTAGTTAA+AGG - chr1.3:62249006-62249025 None:intergenic 35.0%
! TACAGTTTCCTCTAGTTTCT+AGG + chr1.3:62249676-62249695 MS.gene03028:intron 35.0%
! TGACTTTTCCTTGATTGAGT+TGG - chr1.3:62250359-62250378 None:intergenic 35.0%
! TTTCTAGGAGTGGAAGAATT+AGG + chr1.3:62249691-62249710 MS.gene03028:CDS 35.0%
!! AATCTATGGTTTTGCATAGC+CGG - chr1.3:62251126-62251145 None:intergenic 35.0%
!! ACTTCGTGGTTTCATTTTTG+TGG + chr1.3:62248046-62248065 MS.gene03028:intron 35.0%
!! CTACTAACATAGCCTTATAG+AGG - chr1.3:62248665-62248684 None:intergenic 35.0%
!! CTTCGTGGTTTCATTTTTGT+GGG + chr1.3:62248047-62248066 MS.gene03028:intron 35.0%
!! GTTTATGATTTTGATAGCCC+AGG + chr1.3:62250650-62250669 MS.gene03028:CDS 35.0%
!! TCTCTAAGGTTAATACTTCG+TGG + chr1.3:62248032-62248051 MS.gene03028:intron 35.0%
!! TTTTCTTAACTTGGATGAGG+AGG + chr1.3:62250589-62250608 MS.gene03028:CDS 35.0%
AACCTGAAACACCTTCAGAA+TGG + chr1.3:62250126-62250145 MS.gene03028:CDS 40.0%
ACAGACTCACAAGGACTAAA+TGG + chr1.3:62250983-62251002 MS.gene03028:intron 40.0%
ACATGCAACGAGGACTTAAA+TGG + chr1.3:62247858-62247877 MS.gene03028:intron 40.0%
AGTTTCACAACGGTGAAGAA+CGG - chr1.3:62249976-62249995 None:intergenic 40.0%
ATAAGTTTCCCTAGTGTACC+AGG + chr1.3:62249753-62249772 MS.gene03028:CDS 40.0%
ATCAAGTACGTAGACGAGAA+TGG - chr1.3:62249112-62249131 None:intergenic 40.0%
CACAATCAACTACTCTTTGG+TGG + chr1.3:62251271-62251290 MS.gene03028:CDS 40.0%
CAGCTAGGTTTGTGTATTAC+AGG + chr1.3:62249357-62249376 MS.gene03028:intron 40.0%
CGTAATTTCGTCTAACTCAC+CGG + chr1.3:62247794-62247813 MS.gene03028:intron 40.0%
CTAACTCACCGGATACATTA+GGG + chr1.3:62247805-62247824 MS.gene03028:intron 40.0%
CTCTAGACAGAACCATACTA+TGG + chr1.3:62248540-62248559 MS.gene03028:intron 40.0%
CTGGTACCTTCAGAATCAAA+TGG - chr1.3:62248107-62248126 None:intergenic 40.0%
GCATCTTAGCATAGCAACAT+TGG - chr1.3:62249844-62249863 None:intergenic 40.0%
GGACACAATCAACTACTCTT+TGG + chr1.3:62251268-62251287 MS.gene03028:CDS 40.0%
GGAGTTTAAGAAGGAGGTTT+AGG + chr1.3:62248952-62248971 MS.gene03028:intron 40.0%
TCTAACTCACCGGATACATT+AGG + chr1.3:62247804-62247823 MS.gene03028:intron 40.0%
TGAAACACCTTCAGAATGGT+GGG + chr1.3:62250130-62250149 MS.gene03028:CDS 40.0%
TGAAGAGAATACATGCAACG+AGG + chr1.3:62247848-62247867 MS.gene03028:intron 40.0%
TGAGAGACTACCAGTTCAAA+TGG + chr1.3:62251189-62251208 MS.gene03028:CDS 40.0%
TGCAAAGAGCAACTTACTTC+TGG + chr1.3:62250062-62250081 MS.gene03028:CDS 40.0%
TTGGTAGGAGAGTTTCACAA+CGG - chr1.3:62249986-62250005 None:intergenic 40.0%
! ACTTGTACTGCCATTTGAAC+TGG - chr1.3:62251202-62251221 None:intergenic 40.0%
! GAGAATGAGACTCACTGATT+TGG + chr1.3:62251417-62251436 MS.gene03028:CDS 40.0%
! TCGATCACATTAGTCTCTGT+GGG + chr1.3:62250939-62250958 MS.gene03028:intron 40.0%
! TTACTTCGAGTTTCAGCTCA+CGG - chr1.3:62251390-62251409 None:intergenic 40.0%
! TTTCCTCTAGTTTCTAGGAG+TGG + chr1.3:62249681-62249700 MS.gene03028:CDS 40.0%
!! ATCTGATTTGGAGAGAAGGA+TGG + chr1.3:62250448-62250467 MS.gene03028:CDS 40.0%
!! CTACTCTTTGGTGGACTAAA+CGG + chr1.3:62251280-62251299 MS.gene03028:CDS 40.0%
!! GTAGATCTGATTTGGAGAGA+AGG + chr1.3:62250444-62250463 MS.gene03028:CDS 40.0%
!! TCTGATTTGGAGAGAAGGAT+GGG + chr1.3:62250449-62250468 MS.gene03028:CDS 40.0%
!!! AGCTTTGTTTTGGAGATCCT+GGG - chr1.3:62250670-62250689 None:intergenic 40.0%
ACGTTCAGTTTCAGCCATCA+TGG + chr1.3:62248443-62248462 MS.gene03028:intron 45.0%
ACTGAATGACGCCTTCTCTT+TGG - chr1.3:62251601-62251620 None:intergenic 45.0%
CGCTCTGACTCCTTTATGTT+TGG - chr1.3:62251100-62251119 None:intergenic 45.0%
CTCTTCTTCCCTGAAATGCT+AGG - chr1.3:62247627-62247646 None:intergenic 45.0%
CTGAAACACCTTCAGAATGG+TGG + chr1.3:62250129-62250148 MS.gene03028:CDS 45.0%
CTTACAATTCGCGCATGATC+AGG - chr1.3:62250794-62250813 None:intergenic 45.0%
CTTCCACTCCTAGAAACTAG+AGG - chr1.3:62249687-62249706 None:intergenic 45.0%
GAAACACCTTCAGAATGGTG+GGG + chr1.3:62250131-62250150 MS.gene03028:CDS 45.0%
GACGCTGAAGGAGTTTAAGA+AGG + chr1.3:62248943-62248962 MS.gene03028:intron 45.0%
GATGAGAGTAAGTAGAGCGT+TGG - chr1.3:62248218-62248237 None:intergenic 45.0%
GCTGAAGGAGTTTAAGAAGG+AGG + chr1.3:62248946-62248965 MS.gene03028:intron 45.0%
GTCCGGTCCTGATAATTTGA+GGG - chr1.3:62250884-62250903 None:intergenic 45.0%
TAAAGGAGTCAGAGCGATAC+CGG + chr1.3:62251104-62251123 MS.gene03028:CDS 45.0%
TAACTTGGATGAGGAGGATG+AGG + chr1.3:62250595-62250614 MS.gene03028:CDS 45.0%
TGGGTTCCAGTGTTTCACTA+CGG + chr1.3:62248827-62248846 MS.gene03028:intron 45.0%
TGTCCGGTCCTGATAATTTG+AGG - chr1.3:62250885-62250904 None:intergenic 45.0%
TGTCTGGCCCTCAAATTATC+AGG + chr1.3:62250874-62250893 MS.gene03028:intron 45.0%
TTCATGCTTTGCCCTTCACA+AGG + chr1.3:62249424-62249443 MS.gene03028:CDS 45.0%
TTCGTCCAAGCTCAAGCATA+AGG + chr1.3:62247649-62247668 MS.gene03028:CDS 45.0%
! CTCGATCACATTAGTCTCTG+TGG + chr1.3:62250938-62250957 MS.gene03028:intron 45.0%
! GATATGAGTTGAGACGCTGA+AGG + chr1.3:62248931-62248950 MS.gene03028:intron 45.0%
! GATTTTCCCCACCATTCTGA+AGG - chr1.3:62250140-62250159 None:intergenic 45.0%
! GTCTCTCATTTTGTGCTGCA+TGG - chr1.3:62251177-62251196 None:intergenic 45.0%
!! CACCATTCTGAAGGTGTTTC+AGG - chr1.3:62250131-62250150 None:intergenic 45.0%
!! TGATTCTGAAGGTACCAGCT+GGG + chr1.3:62248109-62248128 MS.gene03028:intron 45.0%
!! TTGATTCTGAAGGTACCAGC+TGG + chr1.3:62248108-62248127 MS.gene03028:intron 45.0%
!!! GAGCTTTGTTTTGGAGATCC+TGG - chr1.3:62250671-62250690 None:intergenic 45.0%
AGTTTCCCTAGTGTACCAGG+TGG + chr1.3:62249756-62249775 MS.gene03028:CDS 50.0%
ATGGCACCGTAGTGAAACAC+TGG - chr1.3:62248836-62248855 None:intergenic 50.0%
ATTGTGTCCTCCTCCGTTCA+TGG - chr1.3:62251257-62251276 None:intergenic 50.0%
CATGCGCGAATTGTAAGCGA+TGG + chr1.3:62250797-62250816 MS.gene03028:CDS 50.0%
GCATAAGGCATGCCACTGAA+TGG + chr1.3:62247664-62247683 MS.gene03028:CDS 50.0%
GCATGCCTTATGCTTGAGCT+TGG - chr1.3:62247657-62247676 None:intergenic 50.0%
GGCCCTCAAATTATCAGGAC+CGG + chr1.3:62250879-62250898 MS.gene03028:intron 50.0%
GGTATTAAGGCGAATGGCGT+TGG + chr1.3:62251553-62251572 MS.gene03028:CDS 50.0%
GGTCAATTCCCTCAACGTTC+AGG + chr1.3:62251301-62251320 MS.gene03028:CDS 50.0%
!! TAAGGCGAATGGCGTTGGTT+CGG + chr1.3:62251558-62251577 MS.gene03028:CDS 50.0%
CACCACTGCCTGAACGTTGA+GGG - chr1.3:62251312-62251331 None:intergenic 55.0%
CACGCAGCAGCACCATAGTA+TGG - chr1.3:62248555-62248574 None:intergenic 55.0%
CCACACCACCTGGTACACTA+GGG - chr1.3:62249764-62249783 None:intergenic 55.0%
CGTCTTCGCAACGCCATGAA+CGG + chr1.3:62251241-62251260 MS.gene03028:CDS 55.0%
CGTTCATGGCGTTGCGAAGA+CGG - chr1.3:62251243-62251262 None:intergenic 55.0%
TAGTGTACCAGGTGGTGTGG+AGG + chr1.3:62249764-62249783 MS.gene03028:CDS 55.0%
TCAAATGCCTCCACACCACC+TGG - chr1.3:62249774-62249793 None:intergenic 55.0%
TCCACACCACCTGGTACACT+AGG - chr1.3:62249765-62249784 None:intergenic 55.0%
TTCCCTCAACGTTCAGGCAG+TGG + chr1.3:62251307-62251326 MS.gene03028:CDS 55.0%
!! ATGGCGTTGGTTCGGAGAGT+CGG + chr1.3:62251566-62251585 MS.gene03028:CDS 55.0%
!! CATACTATGGTGCTGCTGCG+TGG + chr1.3:62248553-62248572 MS.gene03028:intron 55.0%
CAACGTTCAGGCAGTGGTGC+AGG + chr1.3:62251313-62251332 MS.gene03028:CDS 60.0%
CCCTAGTGTACCAGGTGGTG+TGG + chr1.3:62249761-62249780 MS.gene03028:CDS 60.0%
CTTCGCAACGCCATGAACGG+AGG + chr1.3:62251244-62251263 MS.gene03028:CDS 60.0%
GCACCACTGCCTGAACGTTG+AGG - chr1.3:62251313-62251332 None:intergenic 60.0%
TCAGGCAGTGGTGCAGGAAG+TGG + chr1.3:62251319-62251338 MS.gene03028:CDS 60.0%
CGCAACGCCATGAACGGAGG+AGG + chr1.3:62251247-62251266 MS.gene03028:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 62247594 62251627 62247594 ID=MS.gene03028
chr1.3 mRNA 62247594 62251627 62247594 ID=MS.gene03028.t1;Parent=MS.gene03028
chr1.3 exon 62247594 62247685 62247594 ID=MS.gene03028.t1.exon1;Parent=MS.gene03028.t1
chr1.3 CDS 62247594 62247685 62247594 ID=cds.MS.gene03028.t1;Parent=MS.gene03028.t1
chr1.3 exon 62249379 62249445 62249379 ID=MS.gene03028.t1.exon2;Parent=MS.gene03028.t1
chr1.3 CDS 62249379 62249445 62249379 ID=cds.MS.gene03028.t1;Parent=MS.gene03028.t1
chr1.3 exon 62249681 62250850 62249681 ID=MS.gene03028.t1.exon3;Parent=MS.gene03028.t1
chr1.3 CDS 62249681 62250850 62249681 ID=cds.MS.gene03028.t1;Parent=MS.gene03028.t1
chr1.3 exon 62251091 62251627 62251091 ID=MS.gene03028.t1.exon4;Parent=MS.gene03028.t1
chr1.3 CDS 62251091 62251627 62251091 ID=cds.MS.gene03028.t1;Parent=MS.gene03028.t1
Gene Sequence

>MS.gene03028

ATGGGAGTTGTCACTGTAGGTGAATTTAAGCCTAGCATTTCAGGGAAGAAGAGCTTTCGTCCAAGCTCAAGCATAAGGCATGCCACTGAATGGTAATATTCTGTTTCTTGTGTCTGTTTTTACTATTCAATTTTGGTTTTATTTGAATGTTTGGACCGACATGAGTTTGTAGAATCATGTCGGAAAAATCACAGTGTCATCGTAATTTCGTCTAACTCACCGGATACATTAGGGTGATTTTTCTTTTTCTAAAGTGAAGAGAATACATGCAACGAGGACTTAAATGGATAGAAATTAGGCAGAAAGACAAAAACTGATCTAATGAGTAATGGCCCACTATAATATAAACTTTAAGAACAAATCTTAATTTTTTTTCCCTCTGTATTGTCATTATCACATGCCTAGAAGTAGATTTTGGTCTAATAATTGGATTCAAATTCTCTAAGGTTAATACTTCGTGGTTTCATTTTTGTGGGCCTACATTCTACAATTAATACAACTGTCCTTTTCCCATTTGATTCTGAAGGTACCAGCTGGGAAACTTTTTCTTTTGTCTTGCAGTGTTGCTCACGTGTTAGTTAATTACTTAGTTCATCTCTTGTGTGTTTATTTGATTGATTTCCAACGCTCTACTTACTCTCATCTTATGAAGTATTCACATAGACAAATAGACATGACACTGACACGTCAATTAATATAATGTAATAACATACGTCATTATTTAATGTACTATTTAATGTACATGGCACCAAACACGTCTTCAATTAGAAATGTCAATACTATAGAGTTTCTCATCTAATTTGGTTAACATATTCATAACCTATGCAAACTTATGGTAGGAAAAGTAACACGTTCAGTTTCAGCCATCATGGTACCGTTTAAACATTGAAATTGGCATATAAATTAAGCTTAACACGTGACATTGACTTTGATGTAGTTATGTACACTCTAGACAGAACCATACTATGGTGCTGCTGCGTGGTGAATGTCAAAATCCCACGTCTTTTATGAAAATTCCAATTAACATTTGTCTGCAATTATTCACGTATGTTTATTATCTTTAGGTAGCCTCTATAAGGCTATGTTAGTAGAGTTGGTCTAATAAGATGTCACCGACTATAAGAAAACATTTTGGCTGTACATAGCCTTAAACATCAATATGACAATACTTGTGTGGCACAAATCCTTTCCCTTTCTTATCAATGAATTTTACTCATCAATGATTTAGATTAATGGGTTCCAGTGTTTCACTACGGTGCCATAATAACATATTCTACAATATTTTAATTATACTTTAACTCGTGTAACCATATAAGTCTCTGAAGGTGTAACACAGTGATATGAGTTGAGACGCTGAAGGAGTTTAAGAAGGAGGTTTAGGGTTCGATCCTGTTAACAATTTTTTTCTCCCTTTAACTAACTAACCGCTAACATTTCCCTATAAAAAATAGTGCCTAAGGTAATGTTAAAGACTTAAAGTAGTCCCACTCAAATTCTGTATTTATTGAATTGGGACCATTCTCGTCTACGTACTTGATCTTGCAAGATTACTTTGTTTTTCTGTTTGTGGTTAACAAAACACATACATTGAACTTCACCTTGTACATTAAATTGCATATACTATATACCTAATATCATATACATGCTGCATAAGACTATTCTAAGGTCTCTAATATAATTGCACTTTGGTAATATGTATATATAGCTGCTTCAGTTGCCACTACTTTATATTGAATTTTCCATGTCTACCATATGCAATTATTCAGCTAGGTTTGTGTATTACAGGCCGATATCTGATGTCTCTAGTGATCTTAGCATCGAAATAGGAGCTTCATGCTTTGCCCTTCACAAGGTAAAAAAAACAAGCTTCCTTTCTTATATGTTACTGTATATTCAGCATAGTGTTATTTGATAAATATATACATGACATTTTTTCTGTATAGTCTATGCCAACATATGCATGAGTTTTACCTTAATGAGAATTGATAAAACCATGAAAATAATGCTCCATTTTTTTTTCTTTCTAAAATGAAAAGAGAGACAATATTGAAGTACTAATAAGTTGTTTGCAACTGTTTTTTCTACAGTTTCCTCTAGTTTCTAGGAGTGGAAGAATTAGGAAACTATTGTTAGAATCAAAAGATTCTAAAGTTTCGCGCATAAGTTTCCCTAGTGTACCAGGTGGTGTGGAGGCATTTGAGCTAGCTGCAAAATTCTGTTATGGAATTAGCATTGAGTTCACTCTCTCCAATGTTGCTATGCTAAGATGCATAGCCCATTTTCTAGAAATGACAGAAGAATTCGCGGAGAAAAACTTGTTGACGCGAGCCGAATCATATCTAAGAGAGACAGTGCTTTCAAACACAGCAAACTCAATATCCGTTCTTCACCGTTGTGAAACTCTCCTACCAATTTCTGAAGAGATTAGCCTTGTTAACAGATTAATCAATGCAATTTCAAGTAATGTATGCAAAGAGCAACTTACTTCTGGTTTGCAAAAACTAGACCATAATTTTCCTTCTAAAATCATTGAACCTGAAACACCTTCAGAATGGTGGGGAAAATCACTTACTGTTCTTAATCTTGATTTCTTCAAAAGGGTTTTATCTGCAATGAAATCAAAGGGACTTAAACAAGATATTATCAGCAAAATTTTGATAAACTATGCACATAATTCTCTTCAAGTAGTCAAAGGAAATTTACTTGATTTAGAATTTTTGAAGAAACAAAGGGTCCTTGTTGAAACAATAACTAGTTTACTACCAACTCAATCAAGGAAAAGTCAGGTTCCAATAGCTTTTCTCTCAAGTTTGTTGAAATCTGCAATAGCAGCATCAGTATCTACTTCTTGTAGATCTGATTTGGAGAGAAGGATGGGTCTACAACTTGACCAAGCAATTCTTGAAGACATTCTGATTCCAACAAGTTTATATCAAAATAATAACCACAACAGTACTATCTATGATACAGACTCAATTGTGAGGATTTTTTCCATTTTTCTTAACTTGGATGAGGAGGATGAGGACGATAGCCGAATGAGAGATGAAACTGAAATGGTTTATGATTTTGATAGCCCAGGATCTCCAAAACAAAGCTCAATTCTTAAGGTATCCAAATTGCTTGACAATTATCTTGCTGAAGTAGCTTTAGACCCAAACTTGTTTCCATCAAAGTTCATTTCACTTGCTGAGTTACTTCCTGATCATGCGCGAATTGTAAGCGATGGACTCTATAGAGCAGTTGATATCTTCCTTAAGGTAAGCAATCTTCACTTTATGATTGTCTGGCCCTCAAATTATCAGGACCGGACAATTTGATATCTAAAAGCGATGAAATTGAAAATTCTCGATCACATTAGTCTCTGTGGGACAATTTTATATACATAGTTAACAGACTCACAAGGACTAAATGGTCGAGAATTTTTCAAATTCAATGACTATACTATTCTGAAATATTAACAATTTCACGATAAACTGATTTTGTACTTCTTGTCATAGGTTCATCCAAACATAAAGGAGTCAGAGCGATACCGGCTATGCAAAACCATAGATTGCCAAAAACTATCACAAGAAGCATGCAGCCATGCAGCACAAAATGAGAGACTACCAGTTCAAATGGCAGTACAAGTTCTATACTTTGAACAAATCCGTCTTCGCAACGCCATGAACGGAGGAGGACACAATCAACTACTCTTTGGTGGACTAAACGGTCAATTCCCTCAACGTTCAGGCAGTGGTGCAGGAAGTGGAGCAATGTCGCCAAGAGATAATTATGCATCAGTTAGAAGAGAAAACCGTGAGCTGAAACTCGAAGTAACAAGAATGAGAATGAGACTCACTGATTTGGAAAAAGATCATGTTTCTATGAAACAAGAGCTTGTTAAGTCTCATCCTGCTAATAAGCTCTTTAAATCATTCACCAAGAAATTAAGTAAGCTTAATGCATTGTTTCGGATGAATGGTATTAAGGCGAATGGCGTTGGTTCGGAGAGTCGGTTTCCTTTTCCAAAGAGAAGGCGTCATTCAGTTGCTTGA
Protein sequence

>MS.gene03028.t1

MGVVTVGEFKPSISGKKSFRPSSSIRHATEWPISDVSSDLSIEIGASCFALHKFPLVSRSGRIRKLLLESKDSKVSRISFPSVPGGVEAFELAAKFCYGISIEFTLSNVAMLRCIAHFLEMTEEFAEKNLLTRAESYLRETVLSNTANSISVLHRCETLLPISEEISLVNRLINAISSNVCKEQLTSGLQKLDHNFPSKIIEPETPSEWWGKSLTVLNLDFFKRVLSAMKSKGLKQDIISKILINYAHNSLQVVKGNLLDLEFLKKQRVLVETITSLLPTQSRKSQVPIAFLSSLLKSAIAASVSTSCRSDLERRMGLQLDQAILEDILIPTSLYQNNNHNSTIYDTDSIVRIFSIFLNLDEEDEDDSRMRDETEMVYDFDSPGSPKQSSILKVSKLLDNYLAEVALDPNLFPSKFISLAELLPDHARIVSDGLYRAVDIFLKVHPNIKESERYRLCKTIDCQKLSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMNGGGHNQLLFGGLNGQFPQRSGSGAGSGAMSPRDNYASVRRENRELKLEVTRMRMRLTDLEKDHVSMKQELVKSHPANKLFKSFTKKLSKLNALFRMNGIKANGVGSESRFPFPKRRRHSVA