AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031072

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031072.t1 MTR_8g102150 93.038 316 9 1 1 303 1 316 0.0 603
MS.gene031072.t1 MTR_8g015220 69.401 317 71 4 1 303 1 305 2.70e-159 446
MS.gene031072.t1 MTR_8g015220 67.260 281 66 4 1 267 1 269 7.50e-135 383
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031072.t1 AT2G19800 73.186 317 71 2 1 303 1 317 1.69e-172 480
MS.gene031072.t1 AT4G26260 73.585 318 69 2 1 303 1 318 2.98e-169 472
MS.gene031072.t1 AT4G26260 76.846 298 54 2 21 303 20 317 8.14e-169 471
MS.gene031072.t1 AT5G56640 70.440 318 75 4 1 303 1 314 5.65e-159 446
MS.gene031072.t1 AT5G56640 77.091 275 49 2 43 303 10 284 1.25e-156 439
MS.gene031072.t1 AT1G14520 70.169 295 64 2 22 303 28 311 5.55e-153 431
MS.gene031072.t1 AT1G14520 70.169 295 64 2 22 303 28 311 5.55e-153 431
MS.gene031072.t1 AT1G14520 70.169 295 64 2 22 303 26 309 1.20e-152 429
MS.gene031072.t1 AT1G14520 70.035 287 62 2 22 295 28 303 7.43e-146 414

Find 58 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTTCTGCTTCCTAAATT+TGG 0.129202 6.2:-7116352 MS.gene031072:CDS
TGGCCAAATGCATTGATTTC+TGG 0.174976 6.2:+7117847 None:intergenic
TGAGGTAATTCACCAAATTT+AGG 0.223539 6.2:+7116340 None:intergenic
ATGAAAATACTTACGGTAAA+AGG 0.253178 6.2:+7115660 None:intergenic
TCAATAAGTGATAGATAATA+TGG 0.271963 6.2:+7115330 None:intergenic
TAAGCAGGGGATTTGATATC+AGG 0.289677 6.2:+7116036 None:intergenic
TATCACCATCTAAGCTTTGC+AGG 0.311884 6.2:+7115202 None:intergenic
GAAGAAAGTGAAAGGCAAAA+AGG 0.312701 6.2:-7117688 MS.gene031072:CDS
ATGCATTTGGCCATTCCTTC+AGG 0.314587 6.2:-7117837 MS.gene031072:intron
ATCAATAAACTTGTTCTTGA+TGG 0.323325 6.2:-7117916 MS.gene031072:CDS
ATCAACTAGAACTTTGCTTT+TGG 0.334218 6.2:+7115368 None:intergenic
CTTGTTGAGCATGTGGAATT+TGG 0.336219 6.2:-7118073 MS.gene031072:intron
GTGCAGGTTGCTAAGGAAAA+TGG 0.342888 6.2:-7115727 MS.gene031072:intron
TGCTTACAAAATCATATGTT+TGG 0.350700 6.2:+7117632 None:intergenic
ATTTCCCTGCAAAGCTTAGA+TGG 0.358857 6.2:-7115207 MS.gene031072:CDS
GGCCAAATGCATTGATTTCT+GGG 0.364742 6.2:+7117848 None:intergenic
GTTCTTGCTGCAGTATTTCA+AGG 0.366185 6.2:-7116064 MS.gene031072:intron
ATTTGTGGTTCATCCAAATC+AGG 0.380292 6.2:+7117414 None:intergenic
ACAAAGCAGAAATGAGCATA+TGG 0.382675 6.2:-7117479 MS.gene031072:CDS
GGCTCCACTTTGCCAAATGC+TGG 0.389898 6.2:-7115706 MS.gene031072:CDS
AAGATTATCCTAATGAAGAT+TGG 0.408744 6.2:-7117356 MS.gene031072:CDS
GGATGAAAGTGATCCTGATT+TGG 0.408862 6.2:-7117427 MS.gene031072:CDS
ATTTGGTGAATTACCTCAAT+GGG 0.414194 6.2:-7116335 MS.gene031072:CDS
ATAATGAACAATCCAGCATT+TGG 0.417188 6.2:+7115694 None:intergenic
AAATGTAACCAATCTTCATT+AGG 0.423631 6.2:+7117348 None:intergenic
TGCAGCAAATGTTGAATTTG+TGG 0.449869 6.2:+7117399 None:intergenic
AAGGGGTTGAGGAATTCTAT+AGG 0.455597 6.2:-7117669 MS.gene031072:CDS
GCAGGAGACACATTTCCCTT+AGG 0.472594 6.2:-7116205 MS.gene031072:intron
AATAAACTTGTTCTTGATGG+TGG 0.477007 6.2:-7117913 MS.gene031072:CDS
TTCATCAAAAGCACAACCTA+AGG 0.482754 6.2:+7116189 None:intergenic
AATTTGGTGAATTACCTCAA+TGG 0.484943 6.2:-7116336 MS.gene031072:CDS
TGACCTTGCAGCTTTGCATA+AGG 0.490633 6.2:-7115578 MS.gene031072:intron
TGAATTGCTGAATGAGGTTG+TGG 0.499420 6.2:-7117448 MS.gene031072:CDS
TAATGCAGGTGAAGAAAATG+AGG 0.508772 6.2:-7117521 MS.gene031072:intron
TAGAAACATACTTAAATATG+TGG 0.519483 6.2:+7115500 None:intergenic
CATTTGACTGCTCTCATCCA+TGG 0.521886 6.2:-7117330 MS.gene031072:intron
TTCCAATGTGCAGGTTGCTA+AGG 0.525933 6.2:-7115734 MS.gene031072:intron
TTACCTCAATGGGCTGTTGT+TGG 0.532222 6.2:-7116325 MS.gene031072:intron
TTGGAATCAACCTGAAGGAA+TGG 0.541951 6.2:+7117827 None:intergenic
CAATCCAGCATTTGGCAAAG+TGG 0.546474 6.2:+7115702 None:intergenic
TTATCTATCACTTATTGAGA+AGG 0.553529 6.2:-7115325 MS.gene031072:intron
AAGCAGGGGATTTGATATCA+GGG 0.566312 6.2:+7116037 None:intergenic
CAAAGCAGAAATGAGCATAT+GGG 0.567692 6.2:-7117478 MS.gene031072:CDS
GGGATCTACAATGAAGGCTG+TGG 0.567727 6.2:-7116000 MS.gene031072:CDS
CTTGCAGCTTTGCATAAGGA+AGG 0.571779 6.2:-7115574 MS.gene031072:intron
AATACTTACGGTAAAAGGAA+TGG 0.576348 6.2:+7115665 None:intergenic
CCAAATGCATTGATTTCTGG+GGG 0.583200 6.2:+7117850 None:intergenic
ATTATGATGAAGAAAGTGAA+AGG 0.589249 6.2:-7117696 MS.gene031072:CDS
GCCAAATGCATTGATTTCTG+GGG 0.591853 6.2:+7117849 None:intergenic
ATCACCATCTAAGCTTTGCA+GGG 0.593458 6.2:+7115203 None:intergenic
TCATCAAAAGCACAACCTAA+GGG 0.600269 6.2:+7116190 None:intergenic
ATGTTGTGAATTGCTGAATG+AGG 0.601153 6.2:-7117454 MS.gene031072:CDS
GAACATACTTGTTGAGCATG+TGG 0.627994 6.2:-7118080 MS.gene031072:CDS
GCAGGTGAAGAAAATGAGGG+AGG 0.632785 6.2:-7117517 MS.gene031072:intron
TGACCAACAACAGCCCATTG+AGG 0.638571 6.2:+7116322 None:intergenic
AATGCAGGTGAAGAAAATGA+GGG 0.643767 6.2:-7117520 MS.gene031072:intron
TGAATCAAATGTACACCACA+AGG 0.662320 6.2:-7116170 MS.gene031072:intron
CAAATGCATTGATTTCTGGG+GGG 0.729015 6.2:+7117851 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATAAAACAATGAAA+TGG + chr6.2:7115487-7115506 None:intergenic 10.0%
!! ATATAATATAAATATTGAAG+AGG + chr6.2:7115992-7116011 None:intergenic 10.0%
!! TTAGTAATTATTATGTAATT+AGG + chr6.2:7117863-7117882 None:intergenic 10.0%
!!! AAACAATAATAAATTGTTTT+GGG - chr6.2:7116423-7116442 MS.gene031072:intron 10.0%
!!! CATTGTTTTATTTATTTTTT+TGG - chr6.2:7115490-7115509 MS.gene031072:intron 10.0%
!! AAAAAAGAAATTAATAGACA+TGG - chr6.2:7115544-7115563 MS.gene031072:CDS 15.0%
!! AAAAAGAAATTAATAGACAT+GGG - chr6.2:7115545-7115564 MS.gene031072:CDS 15.0%
!! AAATATTTATAATTACCTTG+TGG + chr6.2:7117134-7117153 None:intergenic 15.0%
!! AAGACAATAATAATAAAGAA+AGG + chr6.2:7116896-7116915 None:intergenic 15.0%
!! AGACAATAATAATAAAGAAA+GGG + chr6.2:7116895-7116914 None:intergenic 15.0%
!! ATTAATTAACATTTGCAAAT+TGG + chr6.2:7115749-7115768 None:intergenic 15.0%
!! GAGAGAATATTAAAAATATT+AGG - chr6.2:7116390-7116409 MS.gene031072:intron 15.0%
!!! CAAACAATAATAAATTGTTT+TGG - chr6.2:7116422-7116441 MS.gene031072:intron 15.0%
!! AAAAATTATTCGAATTTCCT+CGG + chr6.2:7117487-7117506 None:intergenic 20.0%
!! AAAGATCATTTACAATTTCA+AGG - chr6.2:7116833-7116852 MS.gene031072:intron 20.0%
!! ATAAAACAATGAAATGGAAT+TGG + chr6.2:7115481-7115500 None:intergenic 20.0%
!! ATGATATGAAAATAAGTGTA+AGG + chr6.2:7116999-7117018 None:intergenic 20.0%
!! CATAACAATGAAAATACTTA+CGG + chr6.2:7117636-7117655 None:intergenic 20.0%
!! TAGAAACATACTTAAATATG+TGG + chr6.2:7117789-7117808 None:intergenic 20.0%
!! TCAATAAGTGATAGATAATA+TGG + chr6.2:7117959-7117978 None:intergenic 20.0%
!! TGAATTAGATCATAAGTAAA+GGG + chr6.2:7117525-7117544 None:intergenic 20.0%
!! TTACACTATTACTTAATAAC+CGG - chr6.2:7116668-7116687 MS.gene031072:intron 20.0%
!!! ATAATAAATTGTTTTGGGAA+AGG - chr6.2:7116428-7116447 MS.gene031072:intron 20.0%
!!! TGAAATTGTAAATGATCTTT+TGG + chr6.2:7116833-7116852 None:intergenic 20.0%
! AAATGTAACCAATCTTCATT+AGG + chr6.2:7115941-7115960 None:intergenic 25.0%
! AAGATTATCCTAATGAAGAT+TGG - chr6.2:7115930-7115949 MS.gene031072:intron 25.0%
! AATTCAACATTTGAACTGAA+TGG - chr6.2:7117044-7117063 MS.gene031072:intron 25.0%
! ACATGATGATTATATGACTA+TGG - chr6.2:7117336-7117355 MS.gene031072:CDS 25.0%
! ATCACGTGATGAATTATTTA+TGG + chr6.2:7117367-7117386 None:intergenic 25.0%
! ATGAAAATACTTACGGTAAA+AGG + chr6.2:7117629-7117648 None:intergenic 25.0%
! ATTATGATGAAGAAAGTGAA+AGG - chr6.2:7115590-7115609 MS.gene031072:intron 25.0%
! CTGCTTATAACACTAAAAAT+GGG - chr6.2:7117266-7117285 MS.gene031072:intron 25.0%
! GTGAATTAGATCATAAGTAA+AGG + chr6.2:7117526-7117545 None:intergenic 25.0%
! TAACACCAATCTTTATGAAT+TGG - chr6.2:7117984-7118003 MS.gene031072:intron 25.0%
! TGAAATAGACACAAATTTGA+TGG + chr6.2:7115696-7115715 None:intergenic 25.0%
! TGCTTACAAAATCATATGTT+TGG + chr6.2:7115657-7115676 None:intergenic 25.0%
! TGTTAGACTACATCAAATTA+TGG + chr6.2:7116871-7116890 None:intergenic 25.0%
! TTATCTATCACTTATTGAGA+AGG - chr6.2:7117961-7117980 MS.gene031072:intron 25.0%
! TTGCAAATGTTAATTAATGC+AGG - chr6.2:7115751-7115770 MS.gene031072:intron 25.0%
! TTTGTCACAATTTAGACTAT+TGG + chr6.2:7117446-7117465 None:intergenic 25.0%
!! AAAAACCGAAAAAGATGTTT+TGG - chr6.2:7116464-7116483 MS.gene031072:intron 25.0%
!! AAAACCGAAAAAGATGTTTT+GGG - chr6.2:7116465-7116484 MS.gene031072:intron 25.0%
!! ACATTTGCAAATTGGAATTT+TGG + chr6.2:7115741-7115760 None:intergenic 25.0%
!! ATCAATAAACTTGTTCTTGA+TGG - chr6.2:7115370-7115389 MS.gene031072:CDS 25.0%
!! CACATTTTTATCATCAGATT+GGG + chr6.2:7115338-7115357 None:intergenic 25.0%
!! TTTTCCCAAAACATCTTTTT+CGG + chr6.2:7116472-7116491 None:intergenic 25.0%
!!! AAGATTTTGAGAATTTGAAG+TGG - chr6.2:7117761-7117780 MS.gene031072:intron 25.0%
!!! ATTTTTAGTGTTATAAGCAG+GGG + chr6.2:7117266-7117285 None:intergenic 25.0%
!!! CATTTTTAGTGTTATAAGCA+GGG + chr6.2:7117267-7117286 None:intergenic 25.0%
AAAAATGGGATCTACAATGA+AGG - chr6.2:7117280-7117299 MS.gene031072:intron 30.0%
AAAAGAATTTGGTACGTACA+GGG + chr6.2:7116736-7116755 None:intergenic 30.0%
AAGAAAGTGAAAGGCAAAAA+GGG - chr6.2:7115599-7115618 MS.gene031072:intron 30.0%
AATACTTACGGTAAAAGGAA+TGG + chr6.2:7117624-7117643 None:intergenic 30.0%
AATTAATAGACATGGGTGAT+TGG - chr6.2:7115552-7115571 MS.gene031072:CDS 30.0%
ACATAATTCGTAATTCGCTT+TGG + chr6.2:7116796-7116815 None:intergenic 30.0%
ATAACAAGCCACATTATTAC+AGG - chr6.2:7115310-7115329 MS.gene031072:intron 30.0%
ATAATGAACAATCCAGCATT+TGG + chr6.2:7117595-7117614 None:intergenic 30.0%
ATGGTTATTGACATATTTGC+AGG - chr6.2:7117063-7117082 MS.gene031072:intron 30.0%
ATTCTTCTGCTTCCTAAATT+TGG - chr6.2:7116934-7116953 MS.gene031072:intron 30.0%
CATGACCAATTCATAAAGAT+TGG + chr6.2:7117992-7118011 None:intergenic 30.0%
CCTGCTTATAACACTAAAAA+TGG - chr6.2:7117265-7117284 MS.gene031072:intron 30.0%
GTTTGTAGTGTTAATACTAC+CGG + chr6.2:7116690-7116709 None:intergenic 30.0%
TAACAAGCCACATTATTACA+GGG - chr6.2:7115311-7115330 MS.gene031072:intron 30.0%
TACGCCATATGAAAAGAATT+TGG + chr6.2:7116747-7116766 None:intergenic 30.0%
TACTACTAAACTTCATCGAA+AGG + chr6.2:7116618-7116637 None:intergenic 30.0%
TGAGGTAATTCACCAAATTT+AGG + chr6.2:7116949-7116968 None:intergenic 30.0%
! AATAAACTTGTTCTTGATGG+TGG - chr6.2:7115373-7115392 MS.gene031072:CDS 30.0%
! AATTTGGTGAATTACCTCAA+TGG - chr6.2:7116950-7116969 MS.gene031072:intron 30.0%
! AATTTTCTGTACAGAGAATG+AGG + chr6.2:7117669-7117688 None:intergenic 30.0%
! ATCAACTAGAACTTTGCTTT+TGG + chr6.2:7117921-7117940 None:intergenic 30.0%
! ATTTGGTGAATTACCTCAAT+GGG - chr6.2:7116951-7116970 MS.gene031072:intron 30.0%
! CGTACCAAATTCTTTTCATA+TGG - chr6.2:7116740-7116759 MS.gene031072:intron 30.0%
! GAAGAAACGAATGCAATTTT+AGG - chr6.2:7116308-7116327 MS.gene031072:intron 30.0%
! GAGGAAATTGCATATTTTCT+TGG + chr6.2:7116187-7116206 None:intergenic 30.0%
! GCACATTTTTATCATCAGAT+TGG + chr6.2:7115339-7115358 None:intergenic 30.0%
! TTGTAAATGATCTTTTGGTC+AGG + chr6.2:7116828-7116847 None:intergenic 30.0%
!! AATGTGGCTTGTTATATGAT+GGG + chr6.2:7115305-7115324 None:intergenic 30.0%
!! TAATGTGGCTTGTTATATGA+TGG + chr6.2:7115306-7115325 None:intergenic 30.0%
!! TATTGTCTTGTTTCAGATCT+TGG - chr6.2:7116907-7116926 MS.gene031072:intron 30.0%
!!! AGACTTTTTTTTCTCGATGA+AGG - chr6.2:7116368-7116387 MS.gene031072:intron 30.0%
!!! CCATTTTTAGTGTTATAAGC+AGG + chr6.2:7117268-7117287 None:intergenic 30.0%
!!! TCATTTTTTCACCGAATAGT+TGG - chr6.2:7117402-7117421 MS.gene031072:CDS 30.0%
AAAGAATTTGGTACGTACAG+GGG + chr6.2:7116735-7116754 None:intergenic 35.0%
AAGTCAGCTTACCATAGAAA+TGG - chr6.2:7116152-7116171 MS.gene031072:intron 35.0%
AATGCAGGTGAAGAAAATGA+GGG - chr6.2:7115766-7115785 MS.gene031072:intron 35.0%
ACAAAGCAGAAATGAGCATA+TGG - chr6.2:7115807-7115826 MS.gene031072:intron 35.0%
AGAAAGTGAAAGGCAAAAAG+GGG - chr6.2:7115600-7115619 MS.gene031072:intron 35.0%
AGATTCAGAGAGAAAGAAAC+AGG - chr6.2:7116279-7116298 MS.gene031072:intron 35.0%
ATGCAGAGGAAAACAATAAG+AGG + chr6.2:7118025-7118044 None:intergenic 35.0%
ATGTTGTGAATTGCTGAATG+AGG - chr6.2:7115832-7115851 MS.gene031072:intron 35.0%
ATTTGTGGTTCATCCAAATC+AGG + chr6.2:7115875-7115894 None:intergenic 35.0%
CAAAGCAGAAATGAGCATAT+GGG - chr6.2:7115808-7115827 MS.gene031072:intron 35.0%
CATGGGTGATTGGAATTATT+TGG - chr6.2:7115562-7115581 MS.gene031072:CDS 35.0%
CTTGATGTTGAAATCGAAAG+TGG + chr6.2:7116215-7116234 None:intergenic 35.0%
GAAAAGAATTTGGTACGTAC+AGG + chr6.2:7116737-7116756 None:intergenic 35.0%
GAAGAAAGTGAAAGGCAAAA+AGG - chr6.2:7115598-7115617 MS.gene031072:intron 35.0%
TAAACTTCATCGAAAGGTAG+CGG + chr6.2:7116612-7116631 None:intergenic 35.0%
TAATGCAGGTGAAGAAAATG+AGG - chr6.2:7115765-7115784 MS.gene031072:intron 35.0%
TCGAACCAATTCCAACTATT+CGG + chr6.2:7117416-7117435 None:intergenic 35.0%
TGAATCAAATGTACACCACA+AGG - chr6.2:7117116-7117135 MS.gene031072:intron 35.0%
TGCAGAGGAAAACAATAAGA+GGG + chr6.2:7118024-7118043 None:intergenic 35.0%
TGCAGCAAATGTTGAATTTG+TGG + chr6.2:7115890-7115909 None:intergenic 35.0%
TTTCACCGAATAGTTGGAAT+TGG - chr6.2:7117408-7117427 MS.gene031072:CDS 35.0%
! AGACAATGTGATGATGTCAT+GGG - chr6.2:7117312-7117331 MS.gene031072:intron 35.0%
! CTGCGAATTTTACAGGAATT+TGG + chr6.2:7116132-7116151 None:intergenic 35.0%
! TAGACAATGTGATGATGTCA+TGG - chr6.2:7117311-7117330 MS.gene031072:intron 35.0%
! TCATCAAAAGCACAACCTAA+GGG + chr6.2:7117099-7117118 None:intergenic 35.0%
! TTCATCAAAAGCACAACCTA+AGG + chr6.2:7117100-7117119 None:intergenic 35.0%
!!! GTAGTCTGAGAAGCATTTTT+TGG + chr6.2:7115409-7115428 None:intergenic 35.0%
!!! TGAGAAGCATTTTTTGGTTG+AGG + chr6.2:7115403-7115422 None:intergenic 35.0%
AAGCAGGGGATTTGATATCA+GGG + chr6.2:7117252-7117271 None:intergenic 40.0%
AAGGGGTTGAGGAATTCTAT+AGG - chr6.2:7115617-7115636 MS.gene031072:intron 40.0%
AGAACATAAGTGTCATGCAG+AGG + chr6.2:7118039-7118058 None:intergenic 40.0%
ATTGGGACCCTGTAATAATG+TGG + chr6.2:7115321-7115340 None:intergenic 40.0%
ATTTCCCTGCAAAGCTTAGA+TGG - chr6.2:7118079-7118098 MS.gene031072:CDS 40.0%
CTGCAGCAAGAACAAGATTT+AGG + chr6.2:7117215-7117234 None:intergenic 40.0%
CTTGTTGAGCATGTGGAATT+TGG - chr6.2:7115213-7115232 MS.gene031072:intron 40.0%
GAAATCGAAAGTGGAAAACG+AGG + chr6.2:7116206-7116225 None:intergenic 40.0%
GAAGAGGTGATTATGTACCA+TGG + chr6.2:7115976-7115995 None:intergenic 40.0%
GGATGAAAGTGATCCTGATT+TGG - chr6.2:7115859-7115878 MS.gene031072:intron 40.0%
GGTGATTGGAATTATTTGGC+AGG - chr6.2:7115566-7115585 MS.gene031072:CDS 40.0%
GGTTCACTCTTCCATTTCTA+TGG + chr6.2:7116166-7116185 None:intergenic 40.0%
GTTCTTGCTGCAGTATTTCA+AGG - chr6.2:7117222-7117241 MS.gene031072:intron 40.0%
TAAGCAGGGGATTTGATATC+AGG + chr6.2:7117253-7117272 None:intergenic 40.0%
TACAGGAATTTGGACAAACC+CGG + chr6.2:7116122-7116141 None:intergenic 40.0%
TGAATTGCTGAATGAGGTTG+TGG - chr6.2:7115838-7115857 MS.gene031072:intron 40.0%
TGGAATTGGAATCAACCTGA+AGG + chr6.2:7115467-7115486 None:intergenic 40.0%
TTCTGTACAGAGAATGAGGT+AGG + chr6.2:7117665-7117684 None:intergenic 40.0%
TTGGAATCAACCTGAAGGAA+TGG + chr6.2:7115462-7115481 None:intergenic 40.0%
! CTGACTTCTGCGAATTTTAC+AGG + chr6.2:7116139-7116158 None:intergenic 40.0%
! GAACATACTTGTTGAGCATG+TGG - chr6.2:7115206-7115225 MS.gene031072:CDS 40.0%
! GACAATGTGATGATGTCATG+GGG - chr6.2:7117313-7117332 MS.gene031072:intron 40.0%
! TGCAAGGTCATCAAGGTTTT+CGG + chr6.2:7117698-7117717 None:intergenic 40.0%
! TTCACGGTACTTTTGTGAAC+CGG - chr6.2:7116100-7116119 MS.gene031072:intron 40.0%
!! CAAATGCATTGATTTCTGGG+GGG + chr6.2:7115438-7115457 None:intergenic 40.0%
!! CCAAATGCATTGATTTCTGG+GGG + chr6.2:7115439-7115458 None:intergenic 40.0%
!! GCCAAATGCATTGATTTCTG+GGG + chr6.2:7115440-7115459 None:intergenic 40.0%
!! GGCCAAATGCATTGATTTCT+GGG + chr6.2:7115441-7115460 None:intergenic 40.0%
!! TGGCCAAATGCATTGATTTC+TGG + chr6.2:7115442-7115461 None:intergenic 40.0%
!! TTCACAAAAGTACCGTGAAC+CGG + chr6.2:7116099-7116118 None:intergenic 40.0%
ATGCATTTGGCCATTCCTTC+AGG - chr6.2:7115449-7115468 MS.gene031072:intron 45.0%
CAATCCAGCATTTGGCAAAG+TGG + chr6.2:7117587-7117606 None:intergenic 45.0%
CATTTGACTGCTCTCATCCA+TGG - chr6.2:7115956-7115975 MS.gene031072:intron 45.0%
CCCCCAGAAATCAATGCATT+TGG - chr6.2:7115436-7115455 MS.gene031072:intron 45.0%
CTTCCTTATGCAAAGCTGCA+AGG + chr6.2:7117714-7117733 None:intergenic 45.0%
CTTGCAGCTTTGCATAAGGA+AGG - chr6.2:7117712-7117731 MS.gene031072:intron 45.0%
GAGAGAAAGAAACAGGAGAG+AGG - chr6.2:7116286-7116305 MS.gene031072:intron 45.0%
GGTAGCGAATTCTGTGACTA+TGG + chr6.2:7116043-7116062 None:intergenic 45.0%
GTGCAGGTTGCTAAGGAAAA+TGG - chr6.2:7117559-7117578 MS.gene031072:intron 45.0%
TCGTAATTCGCTTTGGTACG+CGG + chr6.2:7116789-7116808 None:intergenic 45.0%
TGAAAGGCAAAAAGGGGTTG+AGG - chr6.2:7115606-7115625 MS.gene031072:intron 45.0%
TGACCTTGCAGCTTTGCATA+AGG - chr6.2:7117708-7117727 MS.gene031072:intron 45.0%
TTCCAATGTGCAGGTTGCTA+AGG - chr6.2:7117552-7117571 MS.gene031072:intron 45.0%
TTCCTTAGCAACCTGCACAT+TGG + chr6.2:7117557-7117576 None:intergenic 45.0%
TTGTGATGTCTTAGCTTCCG+AGG - chr6.2:7117467-7117486 MS.gene031072:CDS 45.0%
! TCACGGTACTTTTGTGAACC+GGG - chr6.2:7116101-7116120 MS.gene031072:intron 45.0%
!! TTACCTCAATGGGCTGTTGT+TGG - chr6.2:7116961-7116980 MS.gene031072:intron 45.0%
!!! TTTTCAAAAAAATAAAATTA+CGG + chr6.2:7115523-7115542 None:intergenic 5.0%
ATTTCGCGGTTCGCTAGCAA+GGG + chr6.2:7116064-7116083 None:intergenic 50.0%
CACTGTGCATTCCAATGTGC+AGG - chr6.2:7117543-7117562 MS.gene031072:intron 50.0%
GCAAAGCTGCAAGGTCATCA+AGG + chr6.2:7117705-7117724 None:intergenic 50.0%
GCAGGAGACACATTTCCCTT+AGG - chr6.2:7117081-7117100 MS.gene031072:intron 50.0%
GCAGGTGAAGAAAATGAGGG+AGG - chr6.2:7115769-7115788 MS.gene031072:intron 50.0%
GGGATCTACAATGAAGGCTG+TGG - chr6.2:7117286-7117305 MS.gene031072:intron 50.0%
TATAGAGCTTCGGTACGCGT+CGG + chr6.2:7116712-7116731 None:intergenic 50.0%
TGACCAACAACAGCCCATTG+AGG + chr6.2:7116967-7116986 None:intergenic 50.0%
! CGTACAGGGGTATAGAGCTT+CGG + chr6.2:7116722-7116741 None:intergenic 50.0%
ATTCGCTTTGGTACGCGGTG+CGG + chr6.2:7116784-7116803 None:intergenic 55.0%
CATTTCGCGGTTCGCTAGCA+AGG + chr6.2:7116065-7116084 None:intergenic 55.0%
CTTGCTAGCGAACCGCGAAA+TGG - chr6.2:7116063-7116082 MS.gene031072:intron 55.0%
GCGAAATGGTTCGAGCGAAC+CGG - chr6.2:7116077-7116096 MS.gene031072:intron 55.0%
GGCTCCACTTTGCCAAATGC+TGG - chr6.2:7117580-7117599 MS.gene031072:intron 55.0%
GGTTCGCTCGAACCATTTCG+CGG + chr6.2:7116078-7116097 None:intergenic 55.0%
TTCGCTTTGGTACGCGGTGC+GGG + chr6.2:7116783-7116802 None:intergenic 60.0%
TTTGGTACGCGGTGCGGGTA+CGG + chr6.2:7116778-7116797 None:intergenic 60.0%
! GGTTCGAGCGAACCGGTTCA+CGG - chr6.2:7116084-7116103 MS.gene031072:intron 60.0%
GCGGTGCGGGTACGGATTCG+CGG + chr6.2:7116770-7116789 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 7115204 7118104 7115204 ID=MS.gene031072
chr6.2 mRNA 7115204 7118104 7115204 ID=MS.gene031072.t1;Parent=MS.gene031072
chr6.2 exon 7118074 7118104 7118074 ID=MS.gene031072.t1.exon1;Parent=MS.gene031072.t1
chr6.2 CDS 7118074 7118104 7118074 ID=cds.MS.gene031072.t1;Parent=MS.gene031072.t1
chr6.2 exon 7117838 7117976 7117838 ID=MS.gene031072.t1.exon2;Parent=MS.gene031072.t1
chr6.2 CDS 7117838 7117976 7117838 ID=cds.MS.gene031072.t1;Parent=MS.gene031072.t1
chr6.2 exon 7117639 7117720 7117639 ID=MS.gene031072.t1.exon3;Parent=MS.gene031072.t1
chr6.2 CDS 7117639 7117720 7117639 ID=cds.MS.gene031072.t1;Parent=MS.gene031072.t1
chr6.2 exon 7117331 7117535 7117331 ID=MS.gene031072.t1.exon4;Parent=MS.gene031072.t1
chr6.2 CDS 7117331 7117535 7117331 ID=cds.MS.gene031072.t1;Parent=MS.gene031072.t1
chr6.2 exon 7116326 7116385 7116326 ID=MS.gene031072.t1.exon5;Parent=MS.gene031072.t1
chr6.2 CDS 7116326 7116385 7116326 ID=cds.MS.gene031072.t1;Parent=MS.gene031072.t1
chr6.2 exon 7116171 7116223 7116171 ID=MS.gene031072.t1.exon6;Parent=MS.gene031072.t1
chr6.2 CDS 7116171 7116223 7116171 ID=cds.MS.gene031072.t1;Parent=MS.gene031072.t1
chr6.2 exon 7115990 7116073 7115990 ID=MS.gene031072.t1.exon7;Parent=MS.gene031072.t1
chr6.2 CDS 7115990 7116073 7115990 ID=cds.MS.gene031072.t1;Parent=MS.gene031072.t1
chr6.2 exon 7115674 7115743 7115674 ID=MS.gene031072.t1.exon8;Parent=MS.gene031072.t1
chr6.2 CDS 7115674 7115743 7115674 ID=cds.MS.gene031072.t1;Parent=MS.gene031072.t1
chr6.2 exon 7115511 7115589 7115511 ID=MS.gene031072.t1.exon9;Parent=MS.gene031072.t1
chr6.2 CDS 7115511 7115589 7115511 ID=cds.MS.gene031072.t1;Parent=MS.gene031072.t1
chr6.2 exon 7115326 7115407 7115326 ID=MS.gene031072.t1.exon10;Parent=MS.gene031072.t1
chr6.2 CDS 7115326 7115407 7115326 ID=cds.MS.gene031072.t1;Parent=MS.gene031072.t1
chr6.2 exon 7115204 7115230 7115204 ID=MS.gene031072.t1.exon11;Parent=MS.gene031072.t1
chr6.2 CDS 7115204 7115230 7115204 ID=cds.MS.gene031072.t1;Parent=MS.gene031072.t1
Gene Sequence

>MS.gene031072

ATGAACATACTTGTTGAGCATGTGGAATTTGGTAATGATTCTTTTTTGTTTTTGTTTTTGTTTATTTTATTGCTTCTAGTATAGCATTGCAAAAAAGTCCCATCATATAACAAGCCACATTATTACAGGGTCCCAATCTGATGATAAAAATGTGCATTCTGAAGACATCAATAAACTTGTTCTTGATGGTGGATTTCCTCAACCAAAAAATGCTTCTCAGACTACATTCTTCCCCCCAGAAATCAATGCATTTGGCCATTCCTTCAGGTTGATTCCAATTCCATTTCATTGTTTTATTTATTTTTTTGGTCTATAACCGTAATTTTATTTTTTTGAAAATAAAAAAGAAATTAATAGACATGGGTGATTGGAATTATTTGGCAGGAATTATGATGAAGAAAGTGAAAGGCAAAAAGGGGTTGAGGAATTCTATAGGTTGCAACACATCAACCAAACATATGATTTTGTAAGCAAAGTTTATGATTATTTCCATCAAATTTGTGTCTATTTCACATGAAAGAAATGTAATTATGACCAAAATTCCAATTTGCAAATGTTAATTAATGCAGGTGAAGAAAATGAGGGAGGAATACAAGAAATTAGACAAAGCAGAAATGAGCATATGGGAATGTTGTGAATTGCTGAATGAGGTTGTGGATGAAAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTGCTGCAATCTGCTGAAGCTATTAGAAAAGATTATCCTAATGAAGATTGGTTACATTTGACTGCTCTCATCCATGGTACATAATCACCTCTTCAATATTTATATTATATTTTAATTCAACATTCAATCATATCATGACCATAGTCACAGAATTCGCTACCCTTGCTAGCGAACCGCGAAATGGTTCGAGCGAACCGGTTCACGGTACTTTTGTGAACCGGGTTTGTCCAAATTCCTGTAAAATTCGCAGAAGTCAGCTTACCATAGAAATGGAAGAGTGAACCAAGAAAATATGCAATTTCCTCGTTTTCCACTTTCGATTTCAACATCAAGACATGAGAGAAAGATAGTGAAGATGCAATTTTATGTTGTATGAAAGATTCAGAGAGAAAGAAACAGGAGAGAGGAAGAAACGAATGCAATTTTAGGTTAAGTGAGAGACTTTAATTTTTCTTTTTGAAAGAAGAGACTTTTTTTTCTCGATGAAGGAGAGAATATTAAAAATATTAGGTAGCTGAAACAAACAATAATAAATTGTTTTGGGAAAGGCTTCTTTCAAAACAAAAACCGAAAAAGATGTTTTGGGAAAAGCTATTATTTTAACAAAATGATCATACTCGTAATTATGTAAGTCTCAGATTTTGATTACGATGATATTACTACTATTTTAAGTCATGTTTTAAATTAAATTAGTACGTATTGTTAATCCGCTACCTTTCGATGAAGTTTAGTAGTAAAAAACACTTTCTAAAAATTTATTGATAGCTTACACTATTACTTAATAACCGGTAGTATTAACACTACAAACCGACGCGTACCGAAGCTCTATACCCCTGTACGTACCAAATTCTTTTCATATGGCGTACCGCGAATCCGTACCCGCACCGCGTACCAAAGCGAATTACGAATTATGTGACTATGATCCTGACCAAAAGATCATTTACAATTTCAAGGCATAATAATCAACCATAATTTGATGTAGTCTAACATCCCTTTCTTTATTATTATTGTCTTGTTTCAGATCTTGGAAAAATTCTTCTGCTTCCTAAATTTGGTGAATTACCTCAATGGGCTGTTGTTGGTCAGAAACTATTCCTTACACTTATTTTCATATCATTACTAGTTATTTGTATTGAACATTGAATTCAACATTTGAACTGAATGGTTATTGACATATTTGCAGGAGACACATTTCCCTTAGGTTGTGCTTTTGATGAATCAAATGTACACCACAAGGTAATTATAAATATTTTGTAAAATTATGACAATGAATGAGACAATTGTTTAATCTTAAGTAATCATTCAATTTACCTAAATCTTGTTCTTGCTGCAGTATTTCAAGGAGAACCCTGATATCAAATCCCCTGCTTATAACACTAAAAATGGGATCTACAATGAAGGCTGTGGACTAGACAATGTGATGATGTCATGGGGACATGATGATTATATGACTATGGCGAGTCCATAAATAATTCATCACGTGATAGTAGTATTAAATTTTCATTTTTTCACCGAATAGTTGGAATTGGTTCGATCTTGATCCAATAGTCTAAATTGTGACAAATTTGTGATGTCTTAGCTTCCGAGGAAATTCGAATAATTTTTTCTATGATTCTACGACCCTTTACTTATGATCTAATTCACTGTGCATTCCAATGTGCAGGTTGCTAAGGAAAATGGCTCCACTTTGCCAAATGCTGGATTGTTCATTATCAGATACCATTCCTTTTACCGTAAGTATTTTCATTGTTATGTGAAAACCTACCTCATTCTCTGTACAGAAAATTTAATTACCGAAAACCTTGATGACCTTGCAGCTTTGCATAAGGAAGGTGCATACACTCACTTGATGAATGAAGAAGATTTTGAGAATTTGAAGTGGCTCCACATATTTAAGTATGTTTCTATTTTAGTTTCTAACATTTTTTTTTATTCATTTGCTCACATCTTTTGCTTCTCCTAATTACATAATAATTACTAATGATGTAATTTTATGCAGCAAATATGATCTCTACACCAAAAGCAAAGTTCTAGTTGATGTCGAAGCAGTTAAACCATATTATCTATCACTTATTGAGAAGGTAACACCAATCTTTATGAATTGGTCATGTTTTCTTTTCCCTCTTATTGTTTTCCTCTGCATGACACTTATGTTCTTTTGATCTTTGTTTTGAAGTATTTCCCTGCAAAGCTTAGATGGTGA
Protein sequence

>MS.gene031072.t1

MNILVEHVEFGSQSDDKNVHSEDINKLVLDGGFPQPKNASQTTFFPPEINAFGHSFRNYDEESERQKGVEEFYRLQHINQTYDFVKKMREEYKKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGKILLLPKFGELPQWAVVGDTFPLGCAFDESNVHHKYFKENPDIKSPAYNTKNGIYNEGCGLDNVAKENGSTLPNAGLFIIRYHSFYPLHKEGAYTHLMNEEDFENLKWLHIFNKYDLYTKSKVLVDVEAVKPYYLSLIEKYFPAKLRW