Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032166.t1 | XP_024632573.1 | 98.3 | 949 | 16 | 0 | 1 | 949 | 1 | 949 | 0.00E+00 | 1791.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032166.t1 | Q6C8F7 | 19.5 | 400 | 272 | 12 | 29 | 394 | 6 | 389 | 3.0e-06 | 55.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032166.t1 | A0A072VMX4 | 98.3 | 949 | 16 | 0 | 1 | 949 | 1 | 949 | 0.0e+00 | 1791.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene025598 | MS.gene032166 | PPI |
| MS.gene032166 | MS.gene54899 | PPI |
| MS.gene032166 | MS.gene68267 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032166.t1 | MTR_2g098850 | 98.314 | 949 | 16 | 0 | 1 | 949 | 1 | 949 | 0.0 | 1923 |
| MS.gene032166.t1 | MTR_2g098850 | 96.285 | 969 | 16 | 1 | 1 | 949 | 1 | 969 | 0.0 | 1910 |
| MS.gene032166.t1 | MTR_4g067110 | 70.213 | 987 | 242 | 5 | 1 | 949 | 1 | 973 | 0.0 | 1382 |
| MS.gene032166.t1 | MTR_7g091780 | 44.214 | 1011 | 475 | 16 | 2 | 949 | 6 | 990 | 0.0 | 801 |
| MS.gene032166.t1 | MTR_4g039320 | 55.598 | 518 | 212 | 2 | 1 | 518 | 1 | 500 | 0.0 | 624 |
| MS.gene032166.t1 | MTR_4g039320 | 38.369 | 417 | 228 | 10 | 554 | 949 | 620 | 1028 | 7.96e-62 | 228 |
| MS.gene032166.t1 | MTR_1g084090 | 33.784 | 1036 | 560 | 25 | 1 | 949 | 1 | 997 | 1.00e-177 | 542 |
| MS.gene032166.t1 | MTR_1g082810 | 52.273 | 88 | 42 | 0 | 50 | 137 | 12 | 99 | 8.72e-24 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032166.t1 | AT1G05960 | 55.075 | 995 | 388 | 13 | 1 | 949 | 1 | 982 | 0.0 | 1035 |
| MS.gene032166.t1 | AT1G05960 | 55.075 | 995 | 388 | 13 | 1 | 949 | 1 | 982 | 0.0 | 1035 |
| MS.gene032166.t1 | AT1G05960 | 55.075 | 995 | 388 | 13 | 1 | 949 | 1 | 982 | 0.0 | 1035 |
| MS.gene032166.t1 | AT1G05960 | 54.035 | 1016 | 387 | 14 | 1 | 949 | 1 | 1003 | 0.0 | 1023 |
| MS.gene032166.t1 | AT2G41830 | 52.941 | 527 | 231 | 3 | 2 | 518 | 6 | 525 | 0.0 | 604 |
| MS.gene032166.t1 | AT2G41830 | 38.499 | 413 | 232 | 7 | 551 | 949 | 621 | 1025 | 1.82e-66 | 242 |
| MS.gene032166.t1 | AT5G21080 | 55.058 | 514 | 217 | 3 | 1 | 507 | 1 | 507 | 0.0 | 592 |
| MS.gene032166.t1 | AT5G21080 | 40.000 | 365 | 172 | 14 | 542 | 883 | 624 | 964 | 2.65e-50 | 193 |
| MS.gene032166.t1 | AT5G26850 | 35.010 | 1014 | 559 | 23 | 1 | 948 | 1 | 980 | 0.0 | 555 |
| MS.gene032166.t1 | AT5G26850 | 35.010 | 1014 | 559 | 23 | 1 | 948 | 1 | 980 | 0.0 | 555 |
| MS.gene032166.t1 | AT5G26850 | 35.010 | 1014 | 559 | 23 | 1 | 948 | 1 | 980 | 0.0 | 555 |
| MS.gene032166.t1 | AT5G26850 | 35.010 | 1014 | 559 | 23 | 1 | 948 | 1 | 980 | 0.0 | 555 |
| MS.gene032166.t1 | AT2G41830 | 48.111 | 397 | 189 | 3 | 132 | 518 | 1 | 390 | 1.17e-125 | 402 |
| MS.gene032166.t1 | AT2G41830 | 38.499 | 413 | 232 | 7 | 551 | 949 | 486 | 890 | 5.01e-67 | 242 |
Find 204 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGATCTCATTAAACATTTA+AGG | 0.108763 | 2.4:+5229964 | MS.gene032166:CDS |
| ATAGATTATATCAGCAATTT+TGG | 0.141544 | 2.4:+5229247 | MS.gene032166:intron |
| GTCTCTTGCTTTCTTCAATC+TGG | 0.151994 | 2.4:+5231268 | MS.gene032166:CDS |
| GTCAGGGATGCTTTGACTTT+TGG | 0.153104 | 2.4:-5232110 | None:intergenic |
| CGTTGCTTCCTTTGCCAATT+TGG | 0.154788 | 2.4:-5229572 | None:intergenic |
| AAATCAGACAAAATAGTTTA+TGG | 0.211784 | 2.4:+5232335 | MS.gene032166:CDS |
| ATTCAGCATGAAAGTCTTTC+TGG | 0.219781 | 2.4:+5230901 | MS.gene032166:CDS |
| GATACATGGGCTTCTTCTTT+AGG | 0.225126 | 2.4:-5229359 | None:intergenic |
| ATCAGGACCTCCATTGTTTA+TGG | 0.225767 | 2.4:+5233165 | MS.gene032166:CDS |
| GCTTTCTTCAATCTGGGTTC+AGG | 0.240475 | 2.4:+5231275 | MS.gene032166:CDS |
| AAGAAAATGCTAACCTTAAC+AGG | 0.270752 | 2.4:-5233786 | None:intergenic |
| CTTGTATAATATAGCCAAAT+TGG | 0.273376 | 2.4:+5229558 | MS.gene032166:CDS |
| TGTGCGAAGCCAAGGTTAAA+AGG | 0.278558 | 2.4:-5232043 | None:intergenic |
| TTCCCTCAGGAGCATATCTT+TGG | 0.279931 | 2.4:+5231761 | MS.gene032166:CDS |
| TCTATTATTTACTCGTTCTA+AGG | 0.280983 | 2.4:+5231359 | MS.gene032166:CDS |
| TGAGCCAGTTGACATAGTTT+TGG | 0.281185 | 2.4:-5228445 | None:intergenic |
| ATGTATCCCAGTTACCTTCT+TGG | 0.288907 | 2.4:-5231785 | None:intergenic |
| CCTCGCACTGGTTCTTCATT+TGG | 0.289087 | 2.4:-5233653 | None:intergenic |
| CGGCTAAGAATCCTGCTTAT+TGG | 0.314950 | 2.4:+5229524 | MS.gene032166:CDS |
| TTGTTGTGATACAACACATT+AGG | 0.316010 | 2.4:-5230611 | None:intergenic |
| GCCGTCACTCTCTACCTTCT+TGG | 0.318765 | 2.4:-5230872 | None:intergenic |
| GCAGATGAAGTGCGGATCTT+AGG | 0.320739 | 2.4:+5228113 | MS.gene032166:CDS |
| CAACTTCTTGTAACGTTTAA+CGG | 0.322561 | 2.4:-5225288 | None:intergenic |
| TGAAATCTTACCCCGTAATA+AGG | 0.322697 | 2.4:+5225316 | MS.gene032166:CDS |
| CCATCTTATGTTGTCCATAT+TGG | 0.323999 | 2.4:+5229815 | MS.gene032166:CDS |
| GCCATTGCCTCATAATTTGC+AGG | 0.331368 | 2.4:-5231318 | None:intergenic |
| GAATACCTGATTCAGCTAAA+AGG | 0.333943 | 2.4:-5229699 | None:intergenic |
| CTTTCTTCAATCTGGGTTCA+GGG | 0.338815 | 2.4:+5231276 | MS.gene032166:CDS |
| ATCCAAGTGCTTGACCAATA+TGG | 0.341542 | 2.4:-5229829 | None:intergenic |
| CAGGGAACATCTGCTGAAAA+TGG | 0.345392 | 2.4:+5231294 | MS.gene032166:CDS |
| TTCAGGATCTAAGATCTCTT+AGG | 0.350091 | 2.4:+5231226 | MS.gene032166:intron |
| TGGTTCTTCATTTGGTCATA+AGG | 0.353179 | 2.4:-5233645 | None:intergenic |
| CCTGACCGTGAAACACAAAT+TGG | 0.353295 | 2.4:+5230778 | MS.gene032166:CDS |
| TACATACATGTTCAACTTAG+AGG | 0.356074 | 2.4:+5228414 | MS.gene032166:CDS |
| ACTACAAACTCTATCTTCTA+TGG | 0.359318 | 2.4:+5228513 | MS.gene032166:CDS |
| TTCTACCAGTTTCCCATTCA+AGG | 0.361845 | 2.4:-5230932 | None:intergenic |
| CAGTGCGAGGCCCTTGAAAC+AGG | 0.367467 | 2.4:+5233666 | MS.gene032166:CDS |
| CCAATTTGTGTTTCACGGTC+AGG | 0.367633 | 2.4:-5230778 | None:intergenic |
| AACCAACCGGTGCTTCTGTC+AGG | 0.368938 | 2.4:-5232127 | None:intergenic |
| TCTTACTAAAGCCATGTAAC+TGG | 0.377212 | 2.4:-5231721 | None:intergenic |
| ACCAACCGCCCAGATGTTCT+AGG | 0.381925 | 2.4:+5233405 | MS.gene032166:CDS |
| TCTCTTGCTTTCTTCAATCT+GGG | 0.383800 | 2.4:+5231269 | MS.gene032166:CDS |
| TGACTGGCTTCCACTTTGTT+CGG | 0.384685 | 2.4:-5233361 | None:intergenic |
| AGTTTCCCGTCAACCTGTTA+AGG | 0.390731 | 2.4:+5233773 | MS.gene032166:CDS |
| ATCAGAGAAATCGGCTGCTC+TGG | 0.390835 | 2.4:-5232081 | None:intergenic |
| CATGAAATTATACCTTATTA+CGG | 0.393853 | 2.4:-5225328 | None:intergenic |
| ATGAAATTATACCTTATTAC+GGG | 0.396896 | 2.4:-5225327 | None:intergenic |
| AATTGATGAAACAACGCATC+AGG | 0.397806 | 2.4:-5230736 | None:intergenic |
| TGATTAACACCTAGAACATC+TGG | 0.398163 | 2.4:-5233414 | None:intergenic |
| AACTTCTTGTAACGTTTAAC+GGG | 0.399434 | 2.4:-5225287 | None:intergenic |
| GTCACTATCAGCTGTACAAT+TGG | 0.399637 | 2.4:+5232388 | MS.gene032166:CDS |
| AGCTTTCAAGAATTTATCAT+AGG | 0.401656 | 2.4:-5234138 | None:intergenic |
| TGTTGTGATACAACACATTA+GGG | 0.403427 | 2.4:-5230610 | None:intergenic |
| TTTCTCTACCTTGGCAAGGT+TGG | 0.405784 | 2.4:-5229297 | None:intergenic |
| AGATCCCTTGAATGGGAAAC+TGG | 0.413750 | 2.4:+5230927 | MS.gene032166:CDS |
| TTGTAATATGCACATTTCAA+TGG | 0.414364 | 2.4:-5230063 | None:intergenic |
| GTGCTCCAATTTGTGTTTCA+CGG | 0.415252 | 2.4:-5230783 | None:intergenic |
| GAACCACTGGTCTTCTGAAA+AGG | 0.418783 | 2.4:+5229642 | MS.gene032166:CDS |
| TGCCATCCGTGGTTTCTCCT+TGG | 0.421597 | 2.4:+5230830 | MS.gene032166:CDS |
| TCATCAATTGCTACTGGCCA+TGG | 0.423313 | 2.4:+5230750 | MS.gene032166:CDS |
| CAAGCCTCAGTTGCAGTCAT+TGG | 0.424672 | 2.4:+5229933 | MS.gene032166:CDS |
| CCTTCATCTATCAAATCATC+TGG | 0.433965 | 2.4:-5233330 | None:intergenic |
| TATCCCAAAACTATGTCAAC+TGG | 0.436399 | 2.4:+5228441 | MS.gene032166:CDS |
| TAGGAAATTCTTGAACCAAC+TGG | 0.437576 | 2.4:-5229340 | None:intergenic |
| CCAGATGATTTGATAGATGA+AGG | 0.440649 | 2.4:+5233330 | MS.gene032166:CDS |
| CTGTTTCAAGGGCCTCGCAC+TGG | 0.440870 | 2.4:-5233665 | None:intergenic |
| CCTGATGATGCTTATCCATC+AGG | 0.442006 | 2.4:+5233148 | MS.gene032166:CDS |
| TGGAATCAGATCAGAGAAAT+CGG | 0.443201 | 2.4:-5232090 | None:intergenic |
| TTGTATCAGGTTGGAGATGC+AGG | 0.443500 | 2.4:+5230476 | MS.gene032166:intron |
| AACCACTGGTCTTCTGAAAA+GGG | 0.445232 | 2.4:+5229643 | MS.gene032166:CDS |
| CTATTTGCCAGTAGTTTGCT+AGG | 0.446027 | 2.4:+5228059 | MS.gene032166:CDS |
| TCTGGAGCAGATCCCTTGAA+TGG | 0.446950 | 2.4:+5230919 | MS.gene032166:CDS |
| ACTTGAAAGAACTATGGCCT+TGG | 0.447402 | 2.4:-5233739 | None:intergenic |
| GATAAATTCTTGAAAGCTGC+AGG | 0.448096 | 2.4:+5234143 | MS.gene032166:CDS |
| TCCACAGACATCCAGTTACA+TGG | 0.449793 | 2.4:+5231710 | MS.gene032166:intron |
| TGGGAAACTGGTAGAAGAAA+AGG | 0.453205 | 2.4:+5230939 | MS.gene032166:CDS |
| TCTAGGTGTTAATCAACTCT+TGG | 0.455100 | 2.4:+5233422 | MS.gene032166:CDS |
| TTCATTTGGTCATAAGGTAA+AGG | 0.457246 | 2.4:-5233639 | None:intergenic |
| GTAGTTTGCTAGGGATCATT+CGG | 0.460329 | 2.4:+5228069 | MS.gene032166:CDS |
| TGAATTCAGTTTCTCTACCT+TGG | 0.460514 | 2.4:-5229306 | None:intergenic |
| GAGCTCAATGATAGGAAAAT+CGG | 0.463220 | 2.4:+5226791 | MS.gene032166:CDS |
| AGAAAGACTTTCATGCTGAA+TGG | 0.464680 | 2.4:-5230899 | None:intergenic |
| CCTTAAATGTTTAATGAGAT+CGG | 0.465046 | 2.4:-5229964 | None:intergenic |
| GTCCATATTGGTCAAGCACT+TGG | 0.465263 | 2.4:+5229827 | MS.gene032166:CDS |
| TTCAAAAGGAGATTTGAAGT+TGG | 0.466183 | 2.4:+5234022 | MS.gene032166:CDS |
| TTTGGCCAGGTGAAGTTCAT+GGG | 0.467465 | 2.4:+5228917 | MS.gene032166:intron |
| TCATCCACCAATTCAAGAAA+AGG | 0.470757 | 2.4:-5232287 | None:intergenic |
| TTTAGTAAGATGCTTCCAAT+TGG | 0.474294 | 2.4:+5231734 | MS.gene032166:CDS |
| AACGACTGTGCGGCGTGTCT+TGG | 0.477917 | 2.4:+5229591 | MS.gene032166:CDS |
| CATTCAACATCGAAGATACA+TGG | 0.478977 | 2.4:-5229373 | None:intergenic |
| GTTGTTTCATCAATTGCTAC+TGG | 0.481617 | 2.4:+5230744 | MS.gene032166:CDS |
| CATATTACAACTTTCAATCA+AGG | 0.482382 | 2.4:+5230076 | MS.gene032166:CDS |
| CTATGGCCTTGGTCTCCTGC+TGG | 0.483473 | 2.4:-5233728 | None:intergenic |
| TGTTAATCAACTCTTGGAAT+CGG | 0.484775 | 2.4:+5233428 | MS.gene032166:CDS |
| CCAATATGGACAACATAAGA+TGG | 0.486702 | 2.4:-5229815 | None:intergenic |
| AGGTAAAGGAGTTGAGGAAG+TGG | 0.490305 | 2.4:-5233625 | None:intergenic |
| CTGGAGCAGATCCCTTGAAT+GGG | 0.491735 | 2.4:+5230920 | MS.gene032166:CDS |
| AATCTGAAGGATAGGTTGCT+TGG | 0.496345 | 2.4:-5229865 | None:intergenic |
| GAATCCTGCTTATTGGTCAA+AGG | 0.497986 | 2.4:+5229531 | MS.gene032166:CDS |
| GTCATAAGGTAAAGGAGTTG+AGG | 0.498611 | 2.4:-5233631 | None:intergenic |
| TTATACAAACAGCCCGCAGC+AGG | 0.499960 | 2.4:-5232313 | None:intergenic |
| CCTGATGGATAAGCATCATC+AGG | 0.500725 | 2.4:-5233148 | None:intergenic |
| GCTTTCAAGAATTTATCATA+GGG | 0.501037 | 2.4:-5234137 | None:intergenic |
| TTGTCAGATTACAGAGAACT+TGG | 0.504334 | 2.4:+5227405 | MS.gene032166:intron |
| TCAGCTGAAGCAACCGACAT+TGG | 0.505319 | 2.4:+5230002 | MS.gene032166:CDS |
| ATCTGAGCAAGTGGAGAACC+TGG | 0.507631 | 2.4:-5233199 | None:intergenic |
| AAATGGCCCTGCAAATTATG+AGG | 0.509961 | 2.4:+5231311 | MS.gene032166:CDS |
| TCGATGTTGAATGTTGCGAC+AGG | 0.513988 | 2.4:+5229383 | MS.gene032166:CDS |
| GTGCGAAGCCAAGGTTAAAA+GGG | 0.514025 | 2.4:-5232042 | None:intergenic |
| TAGTGTCTTGTGAACGGAAG+CGG | 0.514599 | 2.4:-5234079 | None:intergenic |
| AGGTTGCTGAGCTCAATGAT+AGG | 0.515256 | 2.4:+5226783 | MS.gene032166:intron |
| AAAATTGCTGTCGTCATGTA+GGG | 0.517807 | 2.4:+5227498 | MS.gene032166:CDS |
| ACATACATGTTCAACTTAGA+GGG | 0.518274 | 2.4:+5228415 | MS.gene032166:CDS |
| GAAAATTGCTGTCGTCATGT+AGG | 0.518574 | 2.4:+5227497 | MS.gene032166:CDS |
| GCAAGTGGAGAACCTGGCCT+TGG | 0.519764 | 2.4:-5233193 | None:intergenic |
| TCTACCAGTTTCCCATTCAA+GGG | 0.520413 | 2.4:-5230931 | None:intergenic |
| TCCTGAGGGAAAATGCCAAT+TGG | 0.521190 | 2.4:-5231749 | None:intergenic |
| TGCTAACCTTAACAGGTTGA+CGG | 0.526104 | 2.4:-5233779 | None:intergenic |
| TTGTCTTGATCTTGCACGCA+AGG | 0.526405 | 2.4:-5225264 | None:intergenic |
| ATAATATCAATCTGAAGGAT+AGG | 0.527266 | 2.4:-5229873 | None:intergenic |
| CAAACCTTTGACCAATAAGC+AGG | 0.528978 | 2.4:-5229535 | None:intergenic |
| AATGATCCCTAGCAAACTAC+TGG | 0.529789 | 2.4:-5228066 | None:intergenic |
| CTTGATCTTGCACGCAAGGA+AGG | 0.532038 | 2.4:-5225260 | None:intergenic |
| CCCTGCAAATTATGAGGCAA+TGG | 0.533075 | 2.4:+5231317 | MS.gene032166:CDS |
| CAGGCACTAGAATATTCAAA+AGG | 0.535759 | 2.4:+5234008 | MS.gene032166:intron |
| TCATCACTTTCACAGGGATA+CGG | 0.536957 | 2.4:+5229504 | MS.gene032166:intron |
| ACCTAGAACATCTGGGCGGT+TGG | 0.539791 | 2.4:-5233406 | None:intergenic |
| GCAGGCGGGAACAACCCGCC+TGG | 0.541194 | 2.4:-5225216 | None:intergenic |
| GCTCTGCTTCTACGTTCAGC+TGG | 0.545387 | 2.4:+5228490 | MS.gene032166:CDS |
| GATTTGATAGATGAAGGGAG+TGG | 0.545902 | 2.4:+5233336 | MS.gene032166:CDS |
| GATCTGCGTAATGAAAGCTT+TGG | 0.548201 | 2.4:+5227445 | MS.gene032166:CDS |
| ATAAACAATGGAGGTCCTGA+TGG | 0.548590 | 2.4:-5233163 | None:intergenic |
| TATAAGCATGTGCGAAGCCA+AGG | 0.550236 | 2.4:-5232051 | None:intergenic |
| CTTGGAGCAAAGATGTTACA+AGG | 0.550383 | 2.4:+5227423 | MS.gene032166:CDS |
| TTTATGGAGACACCAAGGCC+AGG | 0.551245 | 2.4:+5233181 | MS.gene032166:CDS |
| GCTAACCTTAACAGGTTGAC+GGG | 0.552218 | 2.4:-5233778 | None:intergenic |
| ACTCACTTTGTCAAAATCCA+TGG | 0.552219 | 2.4:-5228957 | None:intergenic |
| TCAGTTTCTCTACCTTGGCA+AGG | 0.555085 | 2.4:-5229301 | None:intergenic |
| AGCAAACTACTGGCAAATAG+TGG | 0.556008 | 2.4:-5228056 | None:intergenic |
| TGCACCAATGACTGCAACTG+AGG | 0.559030 | 2.4:-5229937 | None:intergenic |
| CTGGTTCTTAAAACTGCGAA+TGG | 0.560241 | 2.4:-5233709 | None:intergenic |
| AGCATCCCTGACAGAAGCAC+CGG | 0.563834 | 2.4:+5232121 | MS.gene032166:CDS |
| ATGTCAACTGGCTCAAGAAG+TGG | 0.563947 | 2.4:+5228453 | MS.gene032166:CDS |
| TATTTGCCAGTAGTTTGCTA+GGG | 0.566348 | 2.4:+5228060 | MS.gene032166:CDS |
| AATACAGAGGTTACCGCAGG+CGG | 0.566552 | 2.4:-5225231 | None:intergenic |
| ATTTGATAGATGAAGGGAGT+GGG | 0.568185 | 2.4:+5233337 | MS.gene032166:CDS |
| CCATTGCCTCATAATTTGCA+GGG | 0.571980 | 2.4:-5231317 | None:intergenic |
| GGTGGATGATAACCTGCTGC+GGG | 0.572873 | 2.4:+5232301 | MS.gene032166:CDS |
| GACTTTCATGCTGAATGGAA+AGG | 0.573928 | 2.4:-5230894 | None:intergenic |
| CAAAATAGTTTATGGATCTG+TGG | 0.575711 | 2.4:+5232343 | MS.gene032166:CDS |
| GAGGCTTACCACCATCTCGC+AGG | 0.575916 | 2.4:+5232015 | MS.gene032166:CDS |
| ACCAACCGGTGCTTCTGTCA+GGG | 0.578305 | 2.4:-5232126 | None:intergenic |
| GCTTCCTAGTGTCTTGTGAA+CGG | 0.579072 | 2.4:-5234085 | None:intergenic |
| TGTTAATAATATCAATCTGA+AGG | 0.579561 | 2.4:-5229878 | None:intergenic |
| AGGGACCTCCTGCGAGATGG+TGG | 0.582709 | 2.4:-5232023 | None:intergenic |
| TTATCATAGGGGCTCGAAGG+TGG | 0.586508 | 2.4:-5234125 | None:intergenic |
| CAGATGATTTGATAGATGAA+GGG | 0.588326 | 2.4:+5233331 | MS.gene032166:CDS |
| AAAAGGGACCTCCTGCGAGA+TGG | 0.588416 | 2.4:-5232026 | None:intergenic |
| AATTTATCATAGGGGCTCGA+AGG | 0.589435 | 2.4:-5234128 | None:intergenic |
| AGCATATCTTTGGACCAAGA+AGG | 0.591122 | 2.4:+5231771 | MS.gene032166:CDS |
| AGGCGGGTTGTTCCCGCCTG+CGG | 0.592808 | 2.4:+5225218 | MS.gene032166:CDS |
| TGTCAACTGGCTCAAGAAGT+GGG | 0.598481 | 2.4:+5228454 | MS.gene032166:CDS |
| TTGAACTAAAAGTAGACAGA+TGG | 0.600239 | 2.4:+5228391 | MS.gene032166:intron |
| ACCACTGGTCTTCTGAAAAG+GGG | 0.600634 | 2.4:+5229644 | MS.gene032166:CDS |
| TAATATAGCCAAATTGGCAA+AGG | 0.601822 | 2.4:+5229564 | MS.gene032166:CDS |
| GGGAACTCTATCTGAGCAAG+TGG | 0.603721 | 2.4:-5233208 | None:intergenic |
| CAATATGGACAACATAAGAT+GGG | 0.604028 | 2.4:-5229814 | None:intergenic |
| ATCTAAATCCAACCTTGCCA+AGG | 0.605271 | 2.4:+5229289 | MS.gene032166:CDS |
| ATACAGAGGTTACCGCAGGC+GGG | 0.606778 | 2.4:-5225230 | None:intergenic |
| TGGTGGATGATAACCTGCTG+CGG | 0.607006 | 2.4:+5232300 | MS.gene032166:CDS |
| TTCACAATCTCAGAACCAGT+TGG | 0.609615 | 2.4:+5229325 | MS.gene032166:CDS |
| TGAGCACTCACATCTATCCA+TGG | 0.610011 | 2.4:+5228940 | MS.gene032166:CDS |
| ATTGATGAAACAACGCATCA+GGG | 0.611434 | 2.4:-5230735 | None:intergenic |
| ATACGCATCATTTCCAATGT+CGG | 0.614408 | 2.4:-5230015 | None:intergenic |
| TAAGAACCAGCAGGAGACCA+AGG | 0.614641 | 2.4:+5233722 | MS.gene032166:CDS |
| TATGGTGCTCATGCCATCCG+TGG | 0.616911 | 2.4:+5230819 | MS.gene032166:CDS |
| GTCCAAAGATATGCTCCTGA+GGG | 0.617155 | 2.4:-5231763 | None:intergenic |
| CTTTCAAGAATTTATCATAG+GGG | 0.618755 | 2.4:-5234136 | None:intergenic |
| AGAGTTCCCTGATGTTGATG+AGG | 0.623066 | 2.4:+5233222 | MS.gene032166:CDS |
| GGTCCAAAGATATGCTCCTG+AGG | 0.625750 | 2.4:-5231764 | None:intergenic |
| GAATCCACTGAGAATTCCCA+AGG | 0.626646 | 2.4:+5226838 | MS.gene032166:CDS |
| TCCAAGAAGGTAGAGAGTGA+CGG | 0.634799 | 2.4:+5230871 | MS.gene032166:CDS |
| TATTATTAACATCACCACAC+AGG | 0.636418 | 2.4:+5229890 | MS.gene032166:CDS |
| CCACTGGTCTTCTGAAAAGG+GGG | 0.638125 | 2.4:+5229645 | MS.gene032166:CDS |
| AAGAAAGCAAGAGACTCACT+TGG | 0.642476 | 2.4:-5231260 | None:intergenic |
| TTCACGGTCAGGATGAGCCA+TGG | 0.645077 | 2.4:-5230767 | None:intergenic |
| GCTTCCGTTCACAAGACACT+AGG | 0.647855 | 2.4:+5234081 | MS.gene032166:CDS |
| CTTGGTGTCTCCATAAACAA+TGG | 0.651412 | 2.4:-5233175 | None:intergenic |
| ATTCAACATCGAAGATACAT+GGG | 0.652123 | 2.4:-5229372 | None:intergenic |
| ATTACCTTGGGAATTCTCAG+TGG | 0.654249 | 2.4:-5226842 | None:intergenic |
| GATTAACACCTAGAACATCT+GGG | 0.656514 | 2.4:-5233413 | None:intergenic |
| GTGATGTTCTACGATCTGAC+TGG | 0.658238 | 2.4:-5233377 | None:intergenic |
| GCTTACCACCATCTCGCAGG+AGG | 0.664540 | 2.4:+5232018 | MS.gene032166:CDS |
| GGGAGTGGGACCGAACAAAG+TGG | 0.665867 | 2.4:+5233351 | MS.gene032166:CDS |
| CAAAGGAAGCAACGACTGTG+CGG | 0.665878 | 2.4:+5229581 | MS.gene032166:CDS |
| AACCAAGGAGAAACCACGGA+TGG | 0.669181 | 2.4:-5230832 | None:intergenic |
| TAATGTGTTGTATCACAACA+AGG | 0.672528 | 2.4:+5230613 | MS.gene032166:CDS |
| GTCTAACCAAGGAGAAACCA+CGG | 0.677544 | 2.4:-5230836 | None:intergenic |
| AAACACGAGCAGATGAAGTG+CGG | 0.678176 | 2.4:+5228105 | MS.gene032166:CDS |
| GGTGTCTCCATAAACAATGG+AGG | 0.682652 | 2.4:-5233172 | None:intergenic |
| CATTGTTTATGGAGACACCA+AGG | 0.696387 | 2.4:+5233176 | MS.gene032166:CDS |
| CCAAATGAAGAACCAGTGCG+AGG | 0.703756 | 2.4:+5233653 | MS.gene032166:CDS |
| TGAAATTATACCTTATTACG+GGG | 0.709279 | 2.4:-5225326 | None:intergenic |
| TAACACCTAGAACATCTGGG+CGG | 0.824221 | 2.4:-5233410 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 5225203 | 5234172 | 5225203 | ID=MS.gene032166 |
| chr2.4 | mRNA | 5225203 | 5234172 | 5225203 | ID=MS.gene032166.t1;Parent=MS.gene032166 |
| chr2.4 | exon | 5225203 | 5225337 | 5225203 | ID=MS.gene032166.t1.exon1;Parent=MS.gene032166.t1 |
| chr2.4 | CDS | 5225203 | 5225337 | 5225203 | ID=cds.MS.gene032166.t1;Parent=MS.gene032166.t1 |
| chr2.4 | exon | 5226785 | 5226859 | 5226785 | ID=MS.gene032166.t1.exon2;Parent=MS.gene032166.t1 |
| chr2.4 | CDS | 5226785 | 5226859 | 5226785 | ID=cds.MS.gene032166.t1;Parent=MS.gene032166.t1 |
| chr2.4 | exon | 5227412 | 5227527 | 5227412 | ID=MS.gene032166.t1.exon3;Parent=MS.gene032166.t1 |
| chr2.4 | CDS | 5227412 | 5227527 | 5227412 | ID=cds.MS.gene032166.t1;Parent=MS.gene032166.t1 |
| chr2.4 | exon | 5228055 | 5228169 | 5228055 | ID=MS.gene032166.t1.exon4;Parent=MS.gene032166.t1 |
| chr2.4 | CDS | 5228055 | 5228169 | 5228055 | ID=cds.MS.gene032166.t1;Parent=MS.gene032166.t1 |
| chr2.4 | exon | 5228406 | 5228534 | 5228406 | ID=MS.gene032166.t1.exon5;Parent=MS.gene032166.t1 |
| chr2.4 | CDS | 5228406 | 5228534 | 5228406 | ID=cds.MS.gene032166.t1;Parent=MS.gene032166.t1 |
| chr2.4 | exon | 5228926 | 5228973 | 5228926 | ID=MS.gene032166.t1.exon6;Parent=MS.gene032166.t1 |
| chr2.4 | CDS | 5228926 | 5228973 | 5228926 | ID=cds.MS.gene032166.t1;Parent=MS.gene032166.t1 |
| chr2.4 | exon | 5229251 | 5229426 | 5229251 | ID=MS.gene032166.t1.exon7;Parent=MS.gene032166.t1 |
| chr2.4 | CDS | 5229251 | 5229426 | 5229251 | ID=cds.MS.gene032166.t1;Parent=MS.gene032166.t1 |
| chr2.4 | exon | 5229519 | 5229715 | 5229519 | ID=MS.gene032166.t1.exon8;Parent=MS.gene032166.t1 |
| chr2.4 | CDS | 5229519 | 5229715 | 5229519 | ID=cds.MS.gene032166.t1;Parent=MS.gene032166.t1 |
| chr2.4 | exon | 5229805 | 5230097 | 5229805 | ID=MS.gene032166.t1.exon9;Parent=MS.gene032166.t1 |
| chr2.4 | CDS | 5229805 | 5230097 | 5229805 | ID=cds.MS.gene032166.t1;Parent=MS.gene032166.t1 |
| chr2.4 | exon | 5230485 | 5230634 | 5230485 | ID=MS.gene032166.t1.exon10;Parent=MS.gene032166.t1 |
| chr2.4 | CDS | 5230485 | 5230634 | 5230485 | ID=cds.MS.gene032166.t1;Parent=MS.gene032166.t1 |
| chr2.4 | exon | 5230730 | 5230960 | 5230730 | ID=MS.gene032166.t1.exon11;Parent=MS.gene032166.t1 |
| chr2.4 | CDS | 5230730 | 5230960 | 5230730 | ID=cds.MS.gene032166.t1;Parent=MS.gene032166.t1 |
| chr2.4 | exon | 5231231 | 5231380 | 5231231 | ID=MS.gene032166.t1.exon12;Parent=MS.gene032166.t1 |
| chr2.4 | CDS | 5231231 | 5231380 | 5231231 | ID=cds.MS.gene032166.t1;Parent=MS.gene032166.t1 |
| chr2.4 | exon | 5231717 | 5231792 | 5231717 | ID=MS.gene032166.t1.exon13;Parent=MS.gene032166.t1 |
| chr2.4 | CDS | 5231717 | 5231792 | 5231717 | ID=cds.MS.gene032166.t1;Parent=MS.gene032166.t1 |
| chr2.4 | exon | 5232015 | 5232142 | 5232015 | ID=MS.gene032166.t1.exon14;Parent=MS.gene032166.t1 |
| chr2.4 | CDS | 5232015 | 5232142 | 5232015 | ID=cds.MS.gene032166.t1;Parent=MS.gene032166.t1 |
| chr2.4 | exon | 5232281 | 5232475 | 5232281 | ID=MS.gene032166.t1.exon15;Parent=MS.gene032166.t1 |
| chr2.4 | CDS | 5232281 | 5232475 | 5232281 | ID=cds.MS.gene032166.t1;Parent=MS.gene032166.t1 |
| chr2.4 | exon | 5233103 | 5233243 | 5233103 | ID=MS.gene032166.t1.exon16;Parent=MS.gene032166.t1 |
| chr2.4 | CDS | 5233103 | 5233243 | 5233103 | ID=cds.MS.gene032166.t1;Parent=MS.gene032166.t1 |
| chr2.4 | exon | 5233321 | 5233449 | 5233321 | ID=MS.gene032166.t1.exon17;Parent=MS.gene032166.t1 |
| chr2.4 | CDS | 5233321 | 5233449 | 5233321 | ID=cds.MS.gene032166.t1;Parent=MS.gene032166.t1 |
| chr2.4 | exon | 5233591 | 5233794 | 5233591 | ID=MS.gene032166.t1.exon18;Parent=MS.gene032166.t1 |
| chr2.4 | CDS | 5233591 | 5233794 | 5233591 | ID=cds.MS.gene032166.t1;Parent=MS.gene032166.t1 |
| chr2.4 | exon | 5234011 | 5234172 | 5234011 | ID=MS.gene032166.t1.exon19;Parent=MS.gene032166.t1 |
| chr2.4 | CDS | 5234011 | 5234172 | 5234011 | ID=cds.MS.gene032166.t1;Parent=MS.gene032166.t1 |
| Gene Sequence |
| Protein sequence |
