AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032267

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032267.t1 MTR_8g463140 98.889 180 2 0 1 180 1 180 2.56e-131 365
MS.gene032267.t1 MTR_2g078770 64.029 139 45 3 45 180 35 171 4.60e-51 162
MS.gene032267.t1 MTR_4g088555 73.810 84 22 0 56 139 54 137 6.81e-43 140
MS.gene032267.t1 MTR_7g110320 52.632 152 53 2 15 154 90 234 3.24e-40 144
MS.gene032267.t1 MTR_7g110320 52.632 152 53 2 15 154 90 234 7.49e-39 140
MS.gene032267.t1 MTR_7g092930 68.889 90 25 1 57 143 57 146 6.09e-38 133
MS.gene032267.t1 MTR_3g085180 70.732 82 24 0 63 144 163 244 1.24e-37 134
MS.gene032267.t1 MTR_2g014200 66.279 86 29 0 57 142 56 141 5.50e-37 125
MS.gene032267.t1 MTR_8g005960 72.941 85 23 0 55 139 177 261 5.71e-37 130
MS.gene032267.t1 MTR_1g086250 53.472 144 60 2 15 154 96 236 1.07e-36 134
MS.gene032267.t1 MTR_7g444860 65.591 93 32 0 57 149 141 233 5.65e-36 127
MS.gene032267.t1 MTR_1g053715 68.605 86 27 0 58 143 67 152 1.72e-35 127
MS.gene032267.t1 MTR_1g035010 60.784 102 40 0 53 154 92 193 4.98e-34 127
MS.gene032267.t1 MTR_2g046550 71.250 80 23 0 65 144 139 218 2.13e-33 125
MS.gene032267.t1 MTR_3g099080 65.385 78 27 0 65 142 98 175 4.84e-32 118
MS.gene032267.t1 MTR_7g028740 63.291 79 29 0 65 143 77 155 5.69e-32 118
MS.gene032267.t1 MTR_4g109770 65.476 84 28 1 65 147 123 206 7.91e-32 119
MS.gene032267.t1 MTR_8g080690 64.198 81 29 0 63 143 149 229 4.74e-31 115
MS.gene032267.t1 MTR_8g080670 65.789 76 26 0 62 137 159 234 7.22e-31 115
MS.gene032267.t1 MTR_5g046670 67.105 76 25 0 63 138 242 317 7.81e-31 117
MS.gene032267.t1 MTR_8g096780 57.292 96 41 0 54 149 88 183 8.08e-31 115
MS.gene032267.t1 MTR_2g461920 68.919 74 23 0 65 138 171 244 4.95e-30 115
MS.gene032267.t1 MTR_8g080680 57.955 88 37 0 62 149 129 216 5.67e-30 113
MS.gene032267.t1 MTR_2g020620 42.697 89 51 0 74 162 99 187 1.59e-16 77.0
MS.gene032267.t1 MTR_1g086250 69.767 43 13 0 112 154 2 44 4.39e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032267.t1 AT3G15270 48.913 184 87 5 1 180 1 181 1.33e-42 140
MS.gene032267.t1 AT3G60030 50.000 154 72 1 6 154 63 216 3.08e-40 145
MS.gene032267.t1 AT1G53160 55.118 127 52 2 59 180 48 174 2.43e-39 132
MS.gene032267.t1 AT1G53160 55.118 127 52 2 59 180 48 174 2.43e-39 132
MS.gene032267.t1 AT2G33810 66.667 87 29 0 56 142 45 131 7.96e-39 129
MS.gene032267.t1 AT1G53160 69.231 91 27 1 59 148 48 138 1.09e-38 130
MS.gene032267.t1 AT1G02065 61.111 108 41 1 52 159 175 281 5.35e-37 130
MS.gene032267.t1 AT2G47070 50.000 142 66 2 33 173 78 215 3.10e-36 133
MS.gene032267.t1 AT2G42200 70.370 81 24 0 63 143 72 152 3.26e-34 124
MS.gene032267.t1 AT1G69170 71.053 76 22 0 63 138 122 197 5.71e-33 121
MS.gene032267.t1 AT1G20980 56.034 116 49 2 54 168 109 223 8.22e-33 123
MS.gene032267.t1 AT5G43270 64.706 85 30 0 63 147 167 251 3.44e-32 119
MS.gene032267.t1 AT5G43270 64.706 85 30 0 63 147 167 251 3.44e-32 119
MS.gene032267.t1 AT5G43270 64.706 85 30 0 63 147 167 251 3.44e-32 119
MS.gene032267.t1 AT1G76580 69.136 81 25 0 63 143 112 192 1.18e-31 120
MS.gene032267.t1 AT5G50670 62.500 80 30 0 63 142 99 178 1.29e-31 117
MS.gene032267.t1 AT5G50670 62.500 80 30 0 63 142 99 178 1.29e-31 117
MS.gene032267.t1 AT5G50570 62.500 80 30 0 63 142 99 178 1.29e-31 117
MS.gene032267.t1 AT5G50570 62.500 80 30 0 63 142 99 178 1.29e-31 117
MS.gene032267.t1 AT1G76580 69.136 81 25 0 63 143 112 192 1.34e-31 120
MS.gene032267.t1 AT1G76580 69.136 81 25 0 63 143 112 192 2.21e-31 119
MS.gene032267.t1 AT3G57920 62.500 88 33 0 65 152 59 146 4.39e-31 115
MS.gene032267.t1 AT1G27370 62.195 82 31 0 57 138 168 249 8.01e-30 112
MS.gene032267.t1 AT1G27360 57.000 100 37 1 49 142 159 258 1.08e-29 112
MS.gene032267.t1 AT1G27360 57.000 100 37 1 49 142 159 258 1.08e-29 112
MS.gene032267.t1 AT1G27360 57.000 100 37 1 49 142 159 258 1.08e-29 112
MS.gene032267.t1 AT1G27360 57.000 100 37 1 49 142 159 258 1.08e-29 112
MS.gene032267.t1 AT1G27370 62.195 82 31 0 57 138 168 249 2.33e-29 111
MS.gene032267.t1 AT1G27370 62.195 82 31 0 57 138 168 249 2.33e-29 111
MS.gene032267.t1 AT1G27370 62.195 82 31 0 57 138 168 249 2.33e-29 111
MS.gene032267.t1 AT1G27370 62.195 82 31 0 57 138 168 249 2.33e-29 111
MS.gene032267.t1 AT1G27370 62.195 82 31 0 57 138 168 249 2.33e-29 111
MS.gene032267.t1 AT1G27370 62.195 82 31 0 57 138 168 249 2.33e-29 111
MS.gene032267.t1 AT1G02065 70.492 61 18 0 52 112 175 235 8.75e-24 94.4
MS.gene032267.t1 AT2G47070 72.881 59 16 0 90 148 2 60 2.95e-23 96.3
MS.gene032267.t1 AT5G18830 42.017 119 62 2 20 138 100 211 1.64e-20 88.6
MS.gene032267.t1 AT5G18830 42.017 119 62 2 20 138 100 211 1.76e-20 88.2
MS.gene032267.t1 AT5G18830 42.017 119 62 2 20 138 100 211 2.03e-20 88.2

Find 67 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAAACTCGCACACTTTA+TGG 0.154731 8.2:-46790280 None:intergenic
CTTCCCTCATTGGCAGCTTC+CGG 0.190285 8.2:-46791008 None:intergenic
TTCCCTCATTGGCAGCTTCC+GGG 0.279455 8.2:-46791007 None:intergenic
GCTGTGACTGCTTCCCTCAT+TGG 0.328447 8.2:-46791018 None:intergenic
ATGAACTTACCAGGCAGTTC+TGG 0.332336 8.2:+46791083 MS.gene032267:CDS
GCACCCGTTGTGGTGGTTGC+AGG 0.348317 8.2:+46790308 MS.gene032267:CDS
GGGGTCGGTGGCGGGAGAAG+AGG 0.366575 8.2:+46790173 MS.gene032267:CDS
AGCTGCCGCAGGCGGTTGGC+TGG 0.389734 8.2:+46790957 MS.gene032267:CDS
CTGAAGAAGAGAAGAAGAAA+GGG 0.392986 8.2:+46790153 MS.gene032267:CDS
TTAGCTTCATCTAATGTTGA+AGG 0.400420 8.2:-46791114 None:intergenic
CAACATGGTGGAAGAAGAAA+TGG 0.403464 8.2:+46790091 MS.gene032267:CDS
AGCCCTGCAACCACCACAAC+GGG 0.406005 8.2:-46790311 None:intergenic
TGGTTGCAGGGCTGAGGCAG+AGG 0.413422 8.2:+46790321 MS.gene032267:CDS
AGAAGAAAGGGGTCGGTGGC+GGG 0.418165 8.2:+46790165 MS.gene032267:CDS
GTCGGTGGCGGGAGAAGAGG+AGG 0.431374 8.2:+46790176 MS.gene032267:CDS
AAGAAGAAAGGGGTCGGTGG+CGG 0.439947 8.2:+46790164 MS.gene032267:CDS
ATCCTGCATTGAGTTTCCTT+AGG 0.443576 8.2:-46791056 None:intergenic
GGCGGGAGAAGAGGAGGTGG+TGG 0.448247 8.2:+46790182 MS.gene032267:CDS
AAATGAAGTAGAAGAGGAGG+AGG 0.457054 8.2:+46790115 MS.gene032267:CDS
GGGAGAAGAGGAGGTGGTGG+CGG 0.468248 8.2:+46790185 MS.gene032267:CDS
CTCATTGGCAGCTTCCGGGT+TGG 0.474954 8.2:-46791003 None:intergenic
AACCACCACAACGGGTGCCT+TGG 0.478730 8.2:-46790303 None:intergenic
CGCACACTTTATGGCGGCGA+TGG 0.480858 8.2:-46790271 None:intergenic
CACCTCTCTGCTTGGCAACA+AGG 0.490126 8.2:-46790218 None:intergenic
CCGCTCCACACCTCTCTGCT+TGG 0.493345 8.2:-46790226 None:intergenic
GAGGTGTGGAGCGGATTTGA+CGG 0.501356 8.2:+46790235 MS.gene032267:CDS
AATGGAAAATGAAGTAGAAG+AGG 0.504373 8.2:+46790109 MS.gene032267:CDS
ACTGAAGAAGAGAAGAAGAA+AGG 0.514644 8.2:+46790152 MS.gene032267:CDS
AAGAAGCTGCCGCAGGCGGT+TGG 0.518296 8.2:+46790953 MS.gene032267:CDS
GGAAAATGAAGTAGAAGAGG+AGG 0.522072 8.2:+46790112 MS.gene032267:CDS
GAGGAAGAGAACATTGATGA+TGG 0.526926 8.2:+46790052 MS.gene032267:CDS
GGTGGCGGGAGAAGAGGAGG+TGG 0.533572 8.2:+46790179 MS.gene032267:CDS
TTGTGGTGGTTGCAGGGCTG+AGG 0.534426 8.2:+46790315 MS.gene032267:CDS
GCTGTGCAGGTTCCATGACT+TGG 0.541073 8.2:+46790911 MS.gene032267:intron
CACCCGTTGTGGTGGTTGCA+GGG 0.543935 8.2:+46790309 MS.gene032267:CDS
TTCCAAGGCACCCGTTGTGG+TGG 0.545459 8.2:+46790301 MS.gene032267:CDS
GAAGAGAAGAAGAAAGGGGT+CGG 0.545505 8.2:+46790158 MS.gene032267:CDS
TCATTCCAAGGCACCCGTTG+TGG 0.554790 8.2:+46790298 MS.gene032267:CDS
CTCACAAAACAATGGAAGCT+AGG 0.561345 8.2:+46790021 None:intergenic
AACCCGGAAGCTGCCAATGA+GGG 0.564949 8.2:+46791005 MS.gene032267:CDS
GACTTATAACCAGAACTGCC+TGG 0.566906 8.2:-46791092 None:intergenic
CAACCCGGAAGCTGCCAATG+AGG 0.568620 8.2:+46791004 MS.gene032267:CDS
CATCAAACTCTACCAAGTCA+TGG 0.569400 8.2:-46790923 None:intergenic
AACCTAAGGAAACTCAATGC+AGG 0.572114 8.2:+46791054 MS.gene032267:CDS
TGATGATGGAAAAGATGAGA+AGG 0.573354 8.2:+46790066 MS.gene032267:CDS
CTGGACACAATGAACGGCGC+CGG 0.573671 8.2:+46790976 MS.gene032267:CDS
TGTGTCCAGCCAACCGCCTG+CGG 0.577001 8.2:-46790962 None:intergenic
GAGAAGAAGAAAGGGGTCGG+TGG 0.581205 8.2:+46790161 MS.gene032267:CDS
AGTGTGCGAGTTTCATTCCA+AGG 0.582628 8.2:+46790286 MS.gene032267:CDS
AGTCTAAAAGAAGCTGCCGC+AGG 0.602245 8.2:+46790946 MS.gene032267:CDS
ACGGCGCCGGAAAACCAACC+CGG 0.609142 8.2:+46790989 MS.gene032267:CDS
CAAAGGACAACATCAACCTA+AGG 0.609316 8.2:+46791040 MS.gene032267:CDS
AATGAAGTAGAAGAGGAGGA+GGG 0.609345 8.2:+46790116 MS.gene032267:CDS
AGGATTCAGATGAACTTACC+AGG 0.609388 8.2:+46791074 MS.gene032267:CDS
CTAAAAGAAGCTGCCGCAGG+CGG 0.624624 8.2:+46790949 MS.gene032267:CDS
TGTTGCCAAGCAGAGAGGTG+TGG 0.631386 8.2:+46790221 MS.gene032267:CDS
GAGGGAAGCAGTCACAGCAA+AGG 0.634063 8.2:+46791023 MS.gene032267:CDS
CAGCCCTGCAACCACCACAA+CGG 0.634176 8.2:-46790312 None:intergenic
CACCTTGTTGCCAAGCAGAG+AGG 0.641872 8.2:+46790216 MS.gene032267:CDS
GGTTGGCTGGACACAATGAA+CGG 0.643542 8.2:+46790970 MS.gene032267:CDS
CTCTCTGCTTGGCAACAAGG+TGG 0.645735 8.2:-46790215 None:intergenic
CCAAGCAGAGAGGTGTGGAG+CGG 0.655389 8.2:+46790226 MS.gene032267:CDS
TGAAGAAGAGAAGAAGAAAG+GGG 0.675275 8.2:+46790154 MS.gene032267:CDS
TGGAAGCTAGGAGTATTGAG+AGG 0.681882 8.2:+46790033 MS.gene032267:CDS
GATGAGAAGGAACAACATGG+TGG 0.695331 8.2:+46790079 MS.gene032267:CDS
GAAACTCGCACACTTTATGG+CGG 0.713336 8.2:-46790277 None:intergenic
AAAGATGAGAAGGAACAACA+TGG 0.732079 8.2:+46790076 MS.gene032267:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGGAAACAAAAATAATTA+AGG + chr8.2:46790572-46790591 MS.gene032267:intron 15.0%
!! AAGGAAACAAAAATAATTAA+GGG + chr8.2:46790573-46790592 MS.gene032267:intron 15.0%
!!! AAATCGAATGTTTTAAAAAT+TGG + chr8.2:46790495-46790514 MS.gene032267:intron 15.0%
!!! TATTCTTTTTGCAGAAATTT+AGG - chr8.2:46790829-46790848 None:intergenic 20.0%
!!! TTTTCTTTTGACATGTTTAT+AGG + chr8.2:46790417-46790436 MS.gene032267:intron 20.0%
! AAAACTGACCTTAAATATCT+TGG + chr8.2:46790782-46790801 MS.gene032267:intron 25.0%
! GAAACAAAAATAATTAAGGG+AGG + chr8.2:46790576-46790595 MS.gene032267:intron 25.0%
! TTACTTAGCTCAATTAGAAA+AGG + chr8.2:46790554-46790573 MS.gene032267:intron 25.0%
!!! TTGAAGCAATGTTTTAAAAC+TGG - chr8.2:46790740-46790759 None:intergenic 25.0%
AATGGAAAATGAAGTAGAAG+AGG + chr8.2:46790109-46790128 MS.gene032267:CDS 30.0%
CTAAGTAAACCATAACCTTA+AGG - chr8.2:46790542-46790561 None:intergenic 30.0%
GAGCTAAAAAAACAGATCAT+GGG - chr8.2:46790464-46790483 None:intergenic 30.0%
TGAGCTAAAAAAACAGATCA+TGG - chr8.2:46790465-46790484 None:intergenic 30.0%
TTGATGAGTGTTAGAGAAAA+TGG - chr8.2:46790388-46790407 None:intergenic 30.0%
! CTGATTCAACCGATTTAAAT+GGG - chr8.2:46790707-46790726 None:intergenic 30.0%
! TCTGATTCAACCGATTTAAA+TGG - chr8.2:46790708-46790727 None:intergenic 30.0%
! TCTTTTGACATGTTTATAGG+TGG + chr8.2:46790420-46790439 MS.gene032267:intron 30.0%
AAAGATGAGAAGGAACAACA+TGG + chr8.2:46790076-46790095 MS.gene032267:CDS 35.0%
AATGAAACTCGCACACTTTA+TGG - chr8.2:46790283-46790302 None:intergenic 35.0%
ACTGAAGAAGAGAAGAAGAA+AGG + chr8.2:46790152-46790171 MS.gene032267:CDS 35.0%
CTGAAGAAGAGAAGAAGAAA+GGG + chr8.2:46790153-46790172 MS.gene032267:CDS 35.0%
GCTCTAGTCCAAGATATTTA+AGG - chr8.2:46790793-46790812 None:intergenic 35.0%
TATTAGACAGTGAGACCTTA+AGG + chr8.2:46790524-46790543 MS.gene032267:intron 35.0%
TGAAGAAGAGAAGAAGAAAG+GGG + chr8.2:46790154-46790173 MS.gene032267:CDS 35.0%
! CAACCGATTTAAATGGGAAT+CGG - chr8.2:46790701-46790720 None:intergenic 35.0%
!! TGATGATGGAAAAGATGAGA+AGG + chr8.2:46790066-46790085 MS.gene032267:CDS 35.0%
AAATGAAGTAGAAGAGGAGG+AGG + chr8.2:46790115-46790134 MS.gene032267:CDS 40.0%
AACCTAAGGAAACTCAATGC+AGG + chr8.2:46791054-46791073 MS.gene032267:CDS 40.0%
AATGAAGTAGAAGAGGAGGA+GGG + chr8.2:46790116-46790135 MS.gene032267:CDS 40.0%
ACAGTGAGACCTTAAGGTTA+TGG + chr8.2:46790530-46790549 MS.gene032267:intron 40.0%
AGGATTCAGATGAACTTACC+AGG + chr8.2:46791074-46791093 MS.gene032267:CDS 40.0%
ATCAGATCAGTCACTTCAAC+TGG + chr8.2:46790612-46790631 MS.gene032267:intron 40.0%
ATCCTGCATTGAGTTTCCTT+AGG - chr8.2:46791059-46791078 None:intergenic 40.0%
CAAAGGACAACATCAACCTA+AGG + chr8.2:46791040-46791059 MS.gene032267:CDS 40.0%
CATCAAACTCTACCAAGTCA+TGG - chr8.2:46790926-46790945 None:intergenic 40.0%
CGAATTTAATCCCGGCAAAT+TGG + chr8.2:46790675-46790694 MS.gene032267:intron 40.0%
GAGGAAGAGAACATTGATGA+TGG + chr8.2:46790052-46790071 MS.gene032267:CDS 40.0%
GGAAAATGAAGTAGAAGAGG+AGG + chr8.2:46790112-46790131 MS.gene032267:CDS 40.0%
TCAACCAGCGAATTTAATCC+CGG + chr8.2:46790667-46790686 MS.gene032267:intron 40.0%
! CAACATGGTGGAAGAAGAAA+TGG + chr8.2:46790091-46790110 MS.gene032267:CDS 40.0%
! TGGCCGATTCCCATTTAAAT+CGG + chr8.2:46790695-46790714 MS.gene032267:intron 40.0%
!! GGTTTTGTCAACAATGTAGC+AGG + chr8.2:46790342-46790361 MS.gene032267:CDS 40.0%
AATGACGAGTTATGCTGTGC+AGG + chr8.2:46790898-46790917 MS.gene032267:intron 45.0%
AGTGTGCGAGTTTCATTCCA+AGG + chr8.2:46790286-46790305 MS.gene032267:CDS 45.0%
ATGAACTTACCAGGCAGTTC+TGG + chr8.2:46791083-46791102 MS.gene032267:CDS 45.0%
GAAACTCGCACACTTTATGG+CGG - chr8.2:46790280-46790299 None:intergenic 45.0%
GAAGAGAAGAAGAAAGGGGT+CGG + chr8.2:46790158-46790177 MS.gene032267:CDS 45.0%
GACTTATAACCAGAACTGCC+TGG - chr8.2:46791095-46791114 None:intergenic 45.0%
GATGAGAAGGAACAACATGG+TGG + chr8.2:46790079-46790098 MS.gene032267:CDS 45.0%
TTTGCCGGGATTAAATTCGC+TGG - chr8.2:46790674-46790693 None:intergenic 45.0%
!! TGGAAGCTAGGAGTATTGAG+AGG + chr8.2:46790033-46790052 MS.gene032267:CDS 45.0%
AGTCTAAAAGAAGCTGCCGC+AGG + chr8.2:46790946-46790965 MS.gene032267:CDS 50.0%
ATGGGAATCGGCCAATTTGC+CGG - chr8.2:46790689-46790708 None:intergenic 50.0%
! GGTTGGCTGGACACAATGAA+CGG + chr8.2:46790970-46790989 MS.gene032267:CDS 50.0%
AACCCGGAAGCTGCCAATGA+GGG + chr8.2:46791005-46791024 MS.gene032267:CDS 55.0%
AAGAAGAAAGGGGTCGGTGG+CGG + chr8.2:46790164-46790183 MS.gene032267:CDS 55.0%
CACCTCTCTGCTTGGCAACA+AGG - chr8.2:46790221-46790240 None:intergenic 55.0%
CACCTTGTTGCCAAGCAGAG+AGG + chr8.2:46790216-46790235 MS.gene032267:CDS 55.0%
CTAAAAGAAGCTGCCGCAGG+CGG + chr8.2:46790949-46790968 MS.gene032267:CDS 55.0%
CTCTCTGCTTGGCAACAAGG+TGG - chr8.2:46790218-46790237 None:intergenic 55.0%
CTTCCCTCATTGGCAGCTTC+CGG - chr8.2:46791011-46791030 None:intergenic 55.0%
GAGAAGAAGAAAGGGGTCGG+TGG + chr8.2:46790161-46790180 MS.gene032267:CDS 55.0%
GAGGGAAGCAGTCACAGCAA+AGG + chr8.2:46791023-46791042 MS.gene032267:CDS 55.0%
GCTGTGACTGCTTCCCTCAT+TGG - chr8.2:46791021-46791040 None:intergenic 55.0%
GCTGTGCAGGTTCCATGACT+TGG + chr8.2:46790911-46790930 MS.gene032267:intron 55.0%
TGGGAATCGGCCAATTTGCC+GGG - chr8.2:46790688-46790707 None:intergenic 55.0%
TGTTGCCAAGCAGAGAGGTG+TGG + chr8.2:46790221-46790240 MS.gene032267:CDS 55.0%
TTCCCTCATTGGCAGCTTCC+GGG - chr8.2:46791010-46791029 None:intergenic 55.0%
! GAGGTGTGGAGCGGATTTGA+CGG + chr8.2:46790235-46790254 MS.gene032267:CDS 55.0%
! TCATTCCAAGGCACCCGTTG+TGG + chr8.2:46790298-46790317 MS.gene032267:CDS 55.0%
!!! CAGCTTCCGGGTTGGTTTTC+CGG - chr8.2:46790998-46791017 None:intergenic 55.0%
AACCACCACAACGGGTGCCT+TGG - chr8.2:46790306-46790325 None:intergenic 60.0%
AGAAGAAAGGGGTCGGTGGC+GGG + chr8.2:46790165-46790184 MS.gene032267:CDS 60.0%
AGCCCTGCAACCACCACAAC+GGG - chr8.2:46790314-46790333 None:intergenic 60.0%
CAACCCGGAAGCTGCCAATG+AGG + chr8.2:46791004-46791023 MS.gene032267:CDS 60.0%
CACCCGTTGTGGTGGTTGCA+GGG + chr8.2:46790309-46790328 MS.gene032267:CDS 60.0%
CAGCCCTGCAACCACCACAA+CGG - chr8.2:46790315-46790334 None:intergenic 60.0%
CGCACACTTTATGGCGGCGA+TGG - chr8.2:46790274-46790293 None:intergenic 60.0%
CTCATTGGCAGCTTCCGGGT+TGG - chr8.2:46791006-46791025 None:intergenic 60.0%
CTGGACACAATGAACGGCGC+CGG + chr8.2:46790976-46790995 MS.gene032267:CDS 60.0%
TTGTGGTGGTTGCAGGGCTG+AGG + chr8.2:46790315-46790334 MS.gene032267:CDS 60.0%
! CCAAGCAGAGAGGTGTGGAG+CGG + chr8.2:46790226-46790245 MS.gene032267:CDS 60.0%
! TTCCAAGGCACCCGTTGTGG+TGG + chr8.2:46790301-46790320 MS.gene032267:CDS 60.0%
AAGAAGCTGCCGCAGGCGGT+TGG + chr8.2:46790953-46790972 MS.gene032267:CDS 65.0%
CCGCTCCACACCTCTCTGCT+TGG - chr8.2:46790229-46790248 None:intergenic 65.0%
GCACCCGTTGTGGTGGTTGC+AGG + chr8.2:46790308-46790327 MS.gene032267:CDS 65.0%
TGGTTGCAGGGCTGAGGCAG+AGG + chr8.2:46790321-46790340 MS.gene032267:CDS 65.0%
TGTGTCCAGCCAACCGCCTG+CGG - chr8.2:46790965-46790984 None:intergenic 65.0%
! ACGGCGCCGGAAAACCAACC+CGG + chr8.2:46790989-46791008 MS.gene032267:CDS 65.0%
! GGGAGAAGAGGAGGTGGTGG+CGG + chr8.2:46790185-46790204 MS.gene032267:CDS 65.0%
GGCGGGAGAAGAGGAGGTGG+TGG + chr8.2:46790182-46790201 MS.gene032267:CDS 70.0%
!! GGTGGCGGGAGAAGAGGAGG+TGG + chr8.2:46790179-46790198 MS.gene032267:CDS 70.0%
!! GTCGGTGGCGGGAGAAGAGG+AGG + chr8.2:46790176-46790195 MS.gene032267:CDS 70.0%
AGCTGCCGCAGGCGGTTGGC+TGG + chr8.2:46790957-46790976 MS.gene032267:CDS 75.0%
!! GGGGTCGGTGGCGGGAGAAG+AGG + chr8.2:46790173-46790192 MS.gene032267:CDS 75.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 46790032 46791130 46790032 ID=MS.gene032267
chr8.2 mRNA 46790032 46791130 46790032 ID=MS.gene032267.t1;Parent=MS.gene032267
chr8.2 exon 46790032 46790363 46790032 ID=MS.gene032267.t1.exon1;Parent=MS.gene032267.t1
chr8.2 CDS 46790032 46790363 46790032 ID=cds.MS.gene032267.t1;Parent=MS.gene032267.t1
chr8.2 exon 46790920 46791130 46790920 ID=MS.gene032267.t1.exon2;Parent=MS.gene032267.t1
chr8.2 CDS 46790920 46791130 46790920 ID=cds.MS.gene032267.t1;Parent=MS.gene032267.t1
Gene Sequence

>MS.gene032267

ATGGAAGCTAGGAGTATTGAGAGGAAGAGAACATTGATGATGGAAAAGATGAGAAGGAACAACATGGTGGAAGAAGAAATGGAAAATGAAGTAGAAGAGGAGGAGGGTGATGTTAGTCTGACTGAAGAAGAGAAGAAGAAAGGGGTCGGTGGCGGGAGAAGAGGAGGTGGTGGCGGTGTTTCTCCACCTTGTTGCCAAGCAGAGAGGTGTGGAGCGGATTTGACGGATGCAAAGAGATACCATCGCCGCCATAAAGTGTGCGAGTTTCATTCCAAGGCACCCGTTGTGGTGGTTGCAGGGCTGAGGCAGAGGTTTTGTCAACAATGTAGCAGGTCTTCAATCTTATATCTACACCATTTTCTCTAACACTCATCAATAATTTGTTTTTTCTTTTGACATGTTTATAGGTGGTAGAGTCTGTCATGTTTTCCCATGATCTGTTTTTTTAGCTCACATTTACATAAAATCGAATGTTTTAAAAATTGGACAAAATATTAGACAGTGAGACCTTAAGGTTATGGTTTACTTAGCTCAATTAGAAAAGGAAACAAAAATAATTAAGGGAGGCAAAAAAATAAAAATCAGATCAGTCACTTCAACTGGTTTAACTGAACTATTGTATAACTGAGATTAACTCAACCAGCGAATTTAATCCCGGCAAATTGGCCGATTCCCATTTAAATCGGTTGAATCAGACACTTCAATCCAGTTTTAAAACATTGCTTCAAACAATTATATATTTGTAAGTGAAAAACTGACCTTAAATATCTTGGACTAGAGCGTCATTTTCTCATCCTAAATTTCTGCAAAAAGAATAAACTAATCATTATTTCATATCATATACAAAGATATACTACGCATTGATCAATGACGAGTTATGCTGTGCAGGTTCCATGACTTGGTAGAGTTTGATGAGTCTAAAAGAAGCTGCCGCAGGCGGTTGGCTGGACACAATGAACGGCGCCGGAAAACCAACCCGGAAGCTGCCAATGAGGGAAGCAGTCACAGCAAAGGACAACATCAACCTAAGGAAACTCAATGCAGGATTCAGATGAACTTACCAGGCAGTTCTGGTTATAAGTCCTTCAACATTAGATGA
Protein sequence

>MS.gene032267.t1

MEARSIERKRTLMMEKMRRNNMVEEEMENEVEEEEGDVSLTEEEKKKGVGGGRRGGGGGVSPPCCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLVEFDESKRSCRRRLAGHNERRRKTNPEAANEGSSHSKGQHQPKETQCRIQMNLPGSSGYKSFNIR