AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34240.t1 MTR_8g463140 98.333 180 3 0 1 180 1 180 3.56e-130 362
MS.gene34240.t1 MTR_2g078770 64.029 139 45 3 45 180 35 171 3.54e-51 162
MS.gene34240.t1 MTR_4g088555 72.619 84 23 0 56 139 54 137 7.35e-43 140
MS.gene34240.t1 MTR_7g110320 52.632 152 53 2 15 154 90 234 1.38e-40 145
MS.gene34240.t1 MTR_7g110320 52.632 152 53 2 15 154 90 234 2.09e-39 142
MS.gene34240.t1 MTR_2g014200 66.279 86 29 0 57 142 56 141 2.31e-37 126
MS.gene34240.t1 MTR_1g086250 53.472 144 60 2 15 154 96 236 3.51e-37 136
MS.gene34240.t1 MTR_7g092930 70.588 85 22 1 57 138 57 141 4.25e-37 131
MS.gene34240.t1 MTR_8g005960 71.765 85 24 0 55 139 177 261 9.92e-37 129
MS.gene34240.t1 MTR_3g085180 68.293 82 26 0 63 144 163 244 1.84e-36 131
MS.gene34240.t1 MTR_7g444860 64.516 93 33 0 57 149 141 233 5.41e-36 127
MS.gene34240.t1 MTR_1g053715 70.370 81 24 0 58 138 67 147 1.61e-34 124
MS.gene34240.t1 MTR_1g035010 59.804 102 41 0 53 154 92 193 2.02e-33 125
MS.gene34240.t1 MTR_2g046550 70.000 80 24 0 65 144 139 218 1.59e-32 122
MS.gene34240.t1 MTR_4g109770 65.476 84 28 1 65 147 123 206 3.29e-32 120
MS.gene34240.t1 MTR_7g028740 66.216 74 25 0 65 138 77 150 2.43e-31 116
MS.gene34240.t1 MTR_5g046670 67.105 76 25 0 63 138 242 317 5.16e-31 117
MS.gene34240.t1 MTR_3g099080 62.821 78 29 0 65 142 98 175 7.42e-31 115
MS.gene34240.t1 MTR_8g080670 64.474 76 27 0 62 137 159 234 1.30e-30 115
MS.gene34240.t1 MTR_8g080690 64.198 81 29 0 63 143 149 229 1.46e-30 114
MS.gene34240.t1 MTR_8g080680 56.818 88 38 0 62 149 129 216 3.53e-30 114
MS.gene34240.t1 MTR_2g461920 68.919 74 23 0 65 138 171 244 3.71e-30 115
MS.gene34240.t1 MTR_8g096780 56.250 96 42 0 54 149 88 183 6.21e-30 113
MS.gene34240.t1 MTR_2g020620 42.697 89 51 0 74 162 99 187 7.65e-17 77.8
MS.gene34240.t1 MTR_1g086250 69.767 43 13 0 112 154 2 44 2.05e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34240.t1 AT3G15270 48.913 184 87 5 1 180 1 181 4.04e-43 142
MS.gene34240.t1 AT1G53160 54.331 127 53 2 59 180 48 174 2.68e-39 132
MS.gene34240.t1 AT1G53160 54.331 127 53 2 59 180 48 174 2.68e-39 132
MS.gene34240.t1 AT3G60030 49.351 154 73 1 6 154 63 216 3.56e-39 142
MS.gene34240.t1 AT2G33810 65.517 87 30 0 56 142 45 131 1.03e-38 129
MS.gene34240.t1 AT1G53160 68.132 91 28 1 59 148 48 138 1.69e-38 130
MS.gene34240.t1 AT1G02065 66.667 93 31 0 52 144 175 267 6.83e-37 130
MS.gene34240.t1 AT2G47070 49.296 142 67 2 33 173 78 215 3.41e-35 130
MS.gene34240.t1 AT2G42200 73.684 76 20 0 63 138 72 147 1.44e-33 122
MS.gene34240.t1 AT1G69170 69.737 76 23 0 63 138 122 197 5.89e-33 121
MS.gene34240.t1 AT1G20980 53.913 115 53 0 54 168 109 223 6.33e-33 124
MS.gene34240.t1 AT5G43270 63.529 85 31 0 63 147 167 251 2.35e-31 117
MS.gene34240.t1 AT5G43270 63.529 85 31 0 63 147 167 251 2.35e-31 117
MS.gene34240.t1 AT5G43270 63.529 85 31 0 63 147 167 251 2.35e-31 117
MS.gene34240.t1 AT1G76580 67.901 81 26 0 63 143 112 192 5.29e-31 118
MS.gene34240.t1 AT1G76580 67.901 81 26 0 63 143 112 192 5.74e-31 118
MS.gene34240.t1 AT5G50670 61.250 80 31 0 63 142 99 178 8.28e-31 115
MS.gene34240.t1 AT5G50670 61.250 80 31 0 63 142 99 178 8.28e-31 115
MS.gene34240.t1 AT5G50570 61.250 80 31 0 63 142 99 178 8.28e-31 115
MS.gene34240.t1 AT5G50570 61.250 80 31 0 63 142 99 178 8.28e-31 115
MS.gene34240.t1 AT1G76580 67.901 81 26 0 63 143 112 192 8.97e-31 117
MS.gene34240.t1 AT3G57920 60.227 88 35 0 65 152 59 146 8.36e-30 112
MS.gene34240.t1 AT1G27370 60.976 82 32 0 57 138 168 249 1.07e-29 112
MS.gene34240.t1 AT1G27360 58.889 90 37 0 49 138 159 248 1.88e-29 112
MS.gene34240.t1 AT1G27360 58.889 90 37 0 49 138 159 248 1.88e-29 112
MS.gene34240.t1 AT1G27360 58.889 90 37 0 49 138 159 248 1.88e-29 112
MS.gene34240.t1 AT1G27360 58.889 90 37 0 49 138 159 248 1.88e-29 112
MS.gene34240.t1 AT1G27370 60.976 82 32 0 57 138 168 249 3.31e-29 111
MS.gene34240.t1 AT1G27370 60.976 82 32 0 57 138 168 249 3.31e-29 111
MS.gene34240.t1 AT1G27370 60.976 82 32 0 57 138 168 249 3.31e-29 111
MS.gene34240.t1 AT1G27370 60.976 82 32 0 57 138 168 249 3.31e-29 111
MS.gene34240.t1 AT1G27370 60.976 82 32 0 57 138 168 249 3.31e-29 111
MS.gene34240.t1 AT1G27370 60.976 82 32 0 57 138 168 249 3.31e-29 111
MS.gene34240.t1 AT1G02065 68.852 61 19 0 52 112 175 235 1.72e-23 93.6
MS.gene34240.t1 AT2G47070 71.186 59 17 0 90 148 2 60 4.47e-22 92.8
MS.gene34240.t1 AT5G18830 42.017 119 62 2 20 138 100 211 7.61e-21 89.4
MS.gene34240.t1 AT5G18830 42.017 119 62 2 20 138 100 211 7.74e-21 89.4
MS.gene34240.t1 AT5G18830 42.017 119 62 2 20 138 100 211 8.31e-21 89.4

Find 63 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAAACTCACACACTTTA+TGG 0.102129 8.4:-47265931 None:intergenic
GCACCTGTTGTGGTGGTTGC+AGG 0.325472 8.4:+47265959 MS.gene34240:CDS
GCTGTGACTGCTTCCCTCAT+TGG 0.328447 8.4:-47266668 None:intergenic
ATGAACTTACCAGGAAGTTC+TGG 0.343330 8.4:+47266733 MS.gene34240:CDS
GGGGTCGGTGGCGGGAGAAG+AGG 0.366575 8.4:+47265824 MS.gene34240:CDS
CTGAAGAAGAGAAGAAGAAA+GGG 0.366865 8.4:+47265804 MS.gene34240:CDS
AGCTGCCGCAGGCGGTTGGC+TGG 0.389734 8.4:+47266607 MS.gene34240:CDS
TTAGCTTCATCTAATGTTGA+AGG 0.400420 8.4:-47266764 None:intergenic
CAACATGGTGGAAGAAGAAA+TGG 0.403464 8.4:+47265742 MS.gene34240:CDS
ATCCCTGCAACCACCACAAC+AGG 0.415205 8.4:-47265962 None:intergenic
AGAAGAAAGGGGTCGGTGGC+GGG 0.418165 8.4:+47265816 MS.gene34240:CDS
GACTTATAGCCAGAACTTCC+TGG 0.421979 8.4:-47266742 None:intergenic
GTCGGTGGCGGGAGAAGAGG+AGG 0.431374 8.4:+47265827 MS.gene34240:CDS
AAGAAGAAAGGGGTCGGTGG+CGG 0.439947 8.4:+47265815 MS.gene34240:CDS
ATCCTGCATTGAGTTTCCTT+AGG 0.443576 8.4:-47266706 None:intergenic
GGCGGGAGAAGAGGAGGTGG+TGG 0.448247 8.4:+47265833 MS.gene34240:CDS
AAATGAAGTAGAAGAGGAGG+AGG 0.457054 8.4:+47265766 MS.gene34240:CDS
GGGAGAAGAGGAGGTGGTGG+CGG 0.468248 8.4:+47265836 MS.gene34240:CDS
CTCATTGGCAGCTTCCGAGT+TGG 0.475789 8.4:-47266653 None:intergenic
TGGTTGCAGGGATGAGGCAG+AGG 0.476673 8.4:+47265972 MS.gene34240:CDS
ACTGAAGAAGAGAAGAAGAA+AGG 0.477392 8.4:+47265803 MS.gene34240:CDS
TCATTCCAAGGCACCTGTTG+TGG 0.481858 8.4:+47265949 MS.gene34240:CDS
CACCTCTCTGCTTGGCAACA+AGG 0.490126 8.4:-47265869 None:intergenic
CAGCTCCACACCTCTCTGCT+TGG 0.503571 8.4:-47265877 None:intergenic
AATGGAAAATGAAGTAGAAG+AGG 0.504373 8.4:+47265760 MS.gene34240:CDS
TTGTGGTGGTTGCAGGGATG+AGG 0.505992 8.4:+47265966 MS.gene34240:CDS
AACCACCACAACAGGTGCCT+TGG 0.507647 8.4:-47265954 None:intergenic
AAGAAGCTGCCGCAGGCGGT+TGG 0.518296 8.4:+47266603 MS.gene34240:CDS
GGAAAATGAAGTAGAAGAGG+AGG 0.522072 8.4:+47265763 MS.gene34240:CDS
GAGGAAGAGAACATTGATGA+TGG 0.526926 8.4:+47265703 MS.gene34240:CDS
GGTGGCGGGAGAAGAGGAGG+TGG 0.533572 8.4:+47265830 MS.gene34240:CDS
CACACACTTTATGGCGGCGA+TGG 0.534636 8.4:-47265922 None:intergenic
GCTGTGCAGGTTCCATGACT+TGG 0.541073 8.4:+47266561 MS.gene34240:intron
GAAGAGAAGAAGAAAGGGGT+CGG 0.545505 8.4:+47265809 MS.gene34240:CDS
CACCTGTTGTGGTGGTTGCA+GGG 0.546200 8.4:+47265960 MS.gene34240:CDS
AACTCGGAAGCTGCCAATGA+GGG 0.554861 8.4:+47266655 MS.gene34240:CDS
TTCCAAGGCACCTGTTGTGG+TGG 0.554919 8.4:+47265952 MS.gene34240:CDS
CTCACAAAACAATGGAAGCT+AGG 0.561345 8.4:+47265672 None:intergenic
AGTGTGTGAGTTTCATTCCA+AGG 0.564413 8.4:+47265937 MS.gene34240:CDS
CAACTCGGAAGCTGCCAATG+AGG 0.566137 8.4:+47266654 MS.gene34240:CDS
CATCAAACTCTACCAAGTCA+TGG 0.569400 8.4:-47266573 None:intergenic
AACCTAAGGAAACTCAATGC+AGG 0.572114 8.4:+47266704 MS.gene34240:CDS
TGATGATGGAAAAGATGAGA+AGG 0.573354 8.4:+47265717 MS.gene34240:CDS
CTGGACACAATGAACGGCGC+CGG 0.573671 8.4:+47266626 MS.gene34240:CDS
TGTGTCCAGCCAACCGCCTG+CGG 0.577001 8.4:-47266612 None:intergenic
GAGGTGTGGAGCTGATTTGA+CGG 0.578847 8.4:+47265886 MS.gene34240:CDS
GAGAAGAAGAAAGGGGTCGG+TGG 0.581205 8.4:+47265812 MS.gene34240:CDS
AGTCTAAAAGAAGCTGCCGC+AGG 0.602245 8.4:+47266596 MS.gene34240:CDS
CAAAGGACAACATCAACCTA+AGG 0.609316 8.4:+47266690 MS.gene34240:CDS
AATGAAGTAGAAGAGGAGGA+GGG 0.609345 8.4:+47265767 MS.gene34240:CDS
AGGATTCAGATGAACTTACC+AGG 0.613592 8.4:+47266724 MS.gene34240:CDS
CTAAAAGAAGCTGCCGCAGG+CGG 0.624624 8.4:+47266599 MS.gene34240:CDS
TGTTGCCAAGCAGAGAGGTG+TGG 0.631386 8.4:+47265872 MS.gene34240:CDS
GAGGGAAGCAGTCACAGCAA+AGG 0.634063 8.4:+47266673 MS.gene34240:CDS
CACCTTGTTGCCAAGCAGAG+AGG 0.641872 8.4:+47265867 MS.gene34240:CDS
GGTTGGCTGGACACAATGAA+CGG 0.643542 8.4:+47266620 MS.gene34240:CDS
CTCTCTGCTTGGCAACAAGG+TGG 0.645735 8.4:-47265866 None:intergenic
TGAAGAAGAGAAGAAGAAAG+GGG 0.662619 8.4:+47265805 MS.gene34240:CDS
TGGAAGCTAGGAGTATTGAG+AGG 0.681882 8.4:+47265684 MS.gene34240:CDS
GAAACTCACACACTTTATGG+CGG 0.694059 8.4:-47265928 None:intergenic
ACGGCGCCGGAAAACCAACT+CGG 0.694480 8.4:+47266639 MS.gene34240:CDS
GATGAGAAGGAACAACATGG+TGG 0.695331 8.4:+47265730 MS.gene34240:CDS
AAAGATGAGAAGGAACAACA+TGG 0.732079 8.4:+47265727 MS.gene34240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGCAAACAAAAATAATTA+AGG + chr8.4:47266223-47266242 MS.gene34240:intron 15.0%
!! AAGCAAACAAAAATAATTAA+GGG + chr8.4:47266224-47266243 MS.gene34240:intron 15.0%
!! AAATCGAATGTTTCAAAAAT+TGG + chr8.4:47266146-47266165 MS.gene34240:intron 20.0%
!!! TTTTCTTTTGACATGTTTAT+AGG + chr8.4:47266068-47266087 MS.gene34240:intron 20.0%
! AAAACTGACCTTAAATATCT+TGG + chr8.4:47266432-47266451 MS.gene34240:intron 25.0%
! ATCTCAGTTATACAATAGTT+CGG - chr8.4:47266294-47266313 None:intergenic 25.0%
! CAAACAAAAATAATTAAGGG+AGG + chr8.4:47266227-47266246 MS.gene34240:intron 25.0%
!! TCTTCTTTTTGCAGAAATTT+AGG - chr8.4:47266479-47266498 None:intergenic 25.0%
!!! TTGAAGCAATGTTTTAAAAC+CGG - chr8.4:47266390-47266409 None:intergenic 25.0%
AATGAAACTCACACACTTTA+TGG - chr8.4:47265934-47265953 None:intergenic 30.0%
AATGGAAAATGAAGTAGAAG+AGG + chr8.4:47265760-47265779 MS.gene34240:CDS 30.0%
CTAAGTAAACCATAACCTTA+AGG - chr8.4:47266193-47266212 None:intergenic 30.0%
GAGCTAAAAAAACAGATCAT+GGG - chr8.4:47266115-47266134 None:intergenic 30.0%
TGAGCTAAAAAAACAGATCA+TGG - chr8.4:47266116-47266135 None:intergenic 30.0%
TTGATGAGTGTTAGAGAAAA+TGG - chr8.4:47266039-47266058 None:intergenic 30.0%
! TCAGATTCAACCGATTTAAA+TGG - chr8.4:47266358-47266377 None:intergenic 30.0%
! TCTTTTGACATGTTTATAGG+TGG + chr8.4:47266071-47266090 MS.gene34240:intron 30.0%
! TTGGTCGATTCCATTTAAAT+CGG + chr8.4:47266345-47266364 MS.gene34240:intron 30.0%
AAAGATGAGAAGGAACAACA+TGG + chr8.4:47265727-47265746 MS.gene34240:CDS 35.0%
ACTGAAGAAGAGAAGAAGAA+AGG + chr8.4:47265803-47265822 MS.gene34240:CDS 35.0%
CTGAAGAAGAGAAGAAGAAA+GGG + chr8.4:47265804-47265823 MS.gene34240:CDS 35.0%
GCTCTAGTCCAAGATATTTA+AGG - chr8.4:47266443-47266462 None:intergenic 35.0%
TATTAGACTGTGAGACCTTA+AGG + chr8.4:47266175-47266194 MS.gene34240:intron 35.0%
TGAAGAAGAGAAGAAGAAAG+GGG + chr8.4:47265805-47265824 MS.gene34240:CDS 35.0%
!! TGATGATGGAAAAGATGAGA+AGG + chr8.4:47265717-47265736 MS.gene34240:CDS 35.0%
AAATGAAGTAGAAGAGGAGG+AGG + chr8.4:47265766-47265785 MS.gene34240:CDS 40.0%
AACCTAAGGAAACTCAATGC+AGG + chr8.4:47266704-47266723 MS.gene34240:CDS 40.0%
AATGAAGTAGAAGAGGAGGA+GGG + chr8.4:47265767-47265786 MS.gene34240:CDS 40.0%
AATGGAATCGACCAATTTGC+CGG - chr8.4:47266340-47266359 None:intergenic 40.0%
ACTGTGAGACCTTAAGGTTA+TGG + chr8.4:47266181-47266200 MS.gene34240:intron 40.0%
AGGATTCAGATGAACTTACC+AGG + chr8.4:47266724-47266743 MS.gene34240:CDS 40.0%
AGTGTGTGAGTTTCATTCCA+AGG + chr8.4:47265937-47265956 MS.gene34240:CDS 40.0%
ATCAGATCAGTCACTTCAAC+TGG + chr8.4:47266263-47266282 MS.gene34240:intron 40.0%
ATCCTGCATTGAGTTTCCTT+AGG - chr8.4:47266709-47266728 None:intergenic 40.0%
ATGAACTTACCAGGAAGTTC+TGG + chr8.4:47266733-47266752 MS.gene34240:CDS 40.0%
CAAAGGACAACATCAACCTA+AGG + chr8.4:47266690-47266709 MS.gene34240:CDS 40.0%
CATCAAACTCTACCAAGTCA+TGG - chr8.4:47266576-47266595 None:intergenic 40.0%
GAAACTCACACACTTTATGG+CGG - chr8.4:47265931-47265950 None:intergenic 40.0%
GAGGAAGAGAACATTGATGA+TGG + chr8.4:47265703-47265722 MS.gene34240:CDS 40.0%
GGAAAATGAAGTAGAAGAGG+AGG + chr8.4:47265763-47265782 MS.gene34240:CDS 40.0%
TTGAATCTGACTCTTCGATC+CGG + chr8.4:47266368-47266387 MS.gene34240:intron 40.0%
! CAACATGGTGGAAGAAGAAA+TGG + chr8.4:47265742-47265761 MS.gene34240:CDS 40.0%
!! GGTTTTGTCAACAATGTAGC+AGG + chr8.4:47265993-47266012 MS.gene34240:CDS 40.0%
AATGACGAGTTATGCTGTGC+AGG + chr8.4:47266548-47266567 MS.gene34240:intron 45.0%
ATGGAATCGACCAATTTGCC+GGG - chr8.4:47266339-47266358 None:intergenic 45.0%
CGAATCTAATCCCGGCAAAT+TGG + chr8.4:47266326-47266345 MS.gene34240:intron 45.0%
GAAGAGAAGAAGAAAGGGGT+CGG + chr8.4:47265809-47265828 MS.gene34240:CDS 45.0%
GACTTATAGCCAGAACTTCC+TGG - chr8.4:47266745-47266764 None:intergenic 45.0%
GATGAGAAGGAACAACATGG+TGG + chr8.4:47265730-47265749 MS.gene34240:CDS 45.0%
TCAAGCAGCGAATCTAATCC+CGG + chr8.4:47266318-47266337 MS.gene34240:intron 45.0%
!! TGGAAGCTAGGAGTATTGAG+AGG + chr8.4:47265684-47265703 MS.gene34240:CDS 45.0%
AACTCGGAAGCTGCCAATGA+GGG + chr8.4:47266655-47266674 MS.gene34240:CDS 50.0%
AGTCTAAAAGAAGCTGCCGC+AGG + chr8.4:47266596-47266615 MS.gene34240:CDS 50.0%
! GGTTGGCTGGACACAATGAA+CGG + chr8.4:47266620-47266639 MS.gene34240:CDS 50.0%
! TCATTCCAAGGCACCTGTTG+TGG + chr8.4:47265949-47265968 MS.gene34240:CDS 50.0%
!! GAGGTGTGGAGCTGATTTGA+CGG + chr8.4:47265886-47265905 MS.gene34240:CDS 50.0%
!!! CAGCTTCCGAGTTGGTTTTC+CGG - chr8.4:47266648-47266667 None:intergenic 50.0%
AACCACCACAACAGGTGCCT+TGG - chr8.4:47265957-47265976 None:intergenic 55.0%
AAGAAGAAAGGGGTCGGTGG+CGG + chr8.4:47265815-47265834 MS.gene34240:CDS 55.0%
ATCCCTGCAACCACCACAAC+AGG - chr8.4:47265965-47265984 None:intergenic 55.0%
CAACTCGGAAGCTGCCAATG+AGG + chr8.4:47266654-47266673 MS.gene34240:CDS 55.0%
CACACACTTTATGGCGGCGA+TGG - chr8.4:47265925-47265944 None:intergenic 55.0%
CACCTCTCTGCTTGGCAACA+AGG - chr8.4:47265872-47265891 None:intergenic 55.0%
CACCTGTTGTGGTGGTTGCA+GGG + chr8.4:47265960-47265979 MS.gene34240:CDS 55.0%
CACCTTGTTGCCAAGCAGAG+AGG + chr8.4:47265867-47265886 MS.gene34240:CDS 55.0%
CTAAAAGAAGCTGCCGCAGG+CGG + chr8.4:47266599-47266618 MS.gene34240:CDS 55.0%
CTCATTGGCAGCTTCCGAGT+TGG - chr8.4:47266656-47266675 None:intergenic 55.0%
CTCTCTGCTTGGCAACAAGG+TGG - chr8.4:47265869-47265888 None:intergenic 55.0%
GAGAAGAAGAAAGGGGTCGG+TGG + chr8.4:47265812-47265831 MS.gene34240:CDS 55.0%
GAGGGAAGCAGTCACAGCAA+AGG + chr8.4:47266673-47266692 MS.gene34240:CDS 55.0%
GCTGTGACTGCTTCCCTCAT+TGG - chr8.4:47266671-47266690 None:intergenic 55.0%
GCTGTGCAGGTTCCATGACT+TGG + chr8.4:47266561-47266580 MS.gene34240:intron 55.0%
TGTTGCCAAGCAGAGAGGTG+TGG + chr8.4:47265872-47265891 MS.gene34240:CDS 55.0%
TTGTGGTGGTTGCAGGGATG+AGG + chr8.4:47265966-47265985 MS.gene34240:CDS 55.0%
! TTCCAAGGCACCTGTTGTGG+TGG + chr8.4:47265952-47265971 MS.gene34240:CDS 55.0%
AGAAGAAAGGGGTCGGTGGC+GGG + chr8.4:47265816-47265835 MS.gene34240:CDS 60.0%
CAGCTCCACACCTCTCTGCT+TGG - chr8.4:47265880-47265899 None:intergenic 60.0%
CTGGACACAATGAACGGCGC+CGG + chr8.4:47266626-47266645 MS.gene34240:CDS 60.0%
GCACCTGTTGTGGTGGTTGC+AGG + chr8.4:47265959-47265978 MS.gene34240:CDS 60.0%
TGGTTGCAGGGATGAGGCAG+AGG + chr8.4:47265972-47265991 MS.gene34240:CDS 60.0%
! ACGGCGCCGGAAAACCAACT+CGG + chr8.4:47266639-47266658 MS.gene34240:CDS 60.0%
AAGAAGCTGCCGCAGGCGGT+TGG + chr8.4:47266603-47266622 MS.gene34240:CDS 65.0%
TGTGTCCAGCCAACCGCCTG+CGG - chr8.4:47266615-47266634 None:intergenic 65.0%
! GGGAGAAGAGGAGGTGGTGG+CGG + chr8.4:47265836-47265855 MS.gene34240:CDS 65.0%
GGCGGGAGAAGAGGAGGTGG+TGG + chr8.4:47265833-47265852 MS.gene34240:CDS 70.0%
!! GGTGGCGGGAGAAGAGGAGG+TGG + chr8.4:47265830-47265849 MS.gene34240:CDS 70.0%
!! GTCGGTGGCGGGAGAAGAGG+AGG + chr8.4:47265827-47265846 MS.gene34240:CDS 70.0%
AGCTGCCGCAGGCGGTTGGC+TGG + chr8.4:47266607-47266626 MS.gene34240:CDS 75.0%
!! GGGGTCGGTGGCGGGAGAAG+AGG + chr8.4:47265824-47265843 MS.gene34240:CDS 75.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 47265683 47266780 47265683 ID=MS.gene34240
chr8.4 mRNA 47265683 47266780 47265683 ID=MS.gene34240.t1;Parent=MS.gene34240
chr8.4 exon 47265683 47266014 47265683 ID=MS.gene34240.t1.exon1;Parent=MS.gene34240.t1
chr8.4 CDS 47265683 47266014 47265683 ID=cds.MS.gene34240.t1;Parent=MS.gene34240.t1
chr8.4 exon 47266570 47266780 47266570 ID=MS.gene34240.t1.exon2;Parent=MS.gene34240.t1
chr8.4 CDS 47266570 47266780 47266570 ID=cds.MS.gene34240.t1;Parent=MS.gene34240.t1
Gene Sequence

>MS.gene34240

ATGGAAGCTAGGAGTATTGAGAGGAAGAGAACATTGATGATGGAAAAGATGAGAAGGAACAACATGGTGGAAGAAGAAATGGAAAATGAAGTAGAAGAGGAGGAGGGTGATGTTAGTCTAACTGAAGAAGAGAAGAAGAAAGGGGTCGGTGGCGGGAGAAGAGGAGGTGGTGGCGGTGTTTCTCCACCTTGTTGCCAAGCAGAGAGGTGTGGAGCTGATTTGACGGATGCAAAGAAATACCATCGCCGCCATAAAGTGTGTGAGTTTCATTCCAAGGCACCTGTTGTGGTGGTTGCAGGGATGAGGCAGAGGTTTTGTCAACAATGTAGCAGGTCTTCAATCTTATATCTACACCATTTTCTCTAACACTCATCAATAATTTGTTTTTTCTTTTGACATGTTTATAGGTGGTAGAGTCTGTCATGTTTTCCCATGATCTGTTTTTTTAGCTCACATTTACATAAAATCGAATGTTTCAAAAATTGGACAAAATATTAGACTGTGAGACCTTAAGGTTATGGTTTACTTAGCTCAATTAGAAAAGCAAACAAAAATAATTAAGGGAGGCAAAAAAATAAAAATCAGATCAGTCACTTCAACTGGTTTAACCGAACTATTGTATAACTGAGATTAAATCAAGCAGCGAATCTAATCCCGGCAAATTGGTCGATTCCATTTAAATCGGTTGAATCTGACTCTTCGATCCGGTTTTAAAACATTGCTTCAAACAATTATAATTTTGTAAGTGAAAAACTGACCTTAAATATCTTGGACTAGAGCGTCATTTTCTCATCCTAAATTTCTGCAAAAAGAAGAAACTATTCATTATTTCATATCATATACAAAGATATACTACGCATTGATCAATGACGAGTTATGCTGTGCAGGTTCCATGACTTGGTAGAGTTTGATGAGTCTAAAAGAAGCTGCCGCAGGCGGTTGGCTGGACACAATGAACGGCGCCGGAAAACCAACTCGGAAGCTGCCAATGAGGGAAGCAGTCACAGCAAAGGACAACATCAACCTAAGGAAACTCAATGCAGGATTCAGATGAACTTACCAGGAAGTTCTGGCTATAAGTCCTTCAACATTAGATGA
Protein sequence

>MS.gene34240.t1

MEARSIERKRTLMMEKMRRNNMVEEEMENEVEEEEGDVSLTEEEKKKGVGGGRRGGGGGVSPPCCQAERCGADLTDAKKYHRRHKVCEFHSKAPVVVVAGMRQRFCQQCSRFHDLVEFDESKRSCRRRLAGHNERRRKTNSEAANEGSSHSKGQHQPKETQCRIQMNLPGSSGYKSFNIR