Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032356.t1 | AFK39115.1 | 97.8 | 136 | 3 | 0 | 43 | 178 | 69 | 204 | 4.30E-75 | 290.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032356.t1 | Q0DC89 | 85.5 | 124 | 18 | 0 | 52 | 175 | 88 | 211 | 8.4e-64 | 244.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032356.t1 | I3SN78 | 97.8 | 136 | 3 | 0 | 43 | 178 | 69 | 204 | 3.1e-75 | 290.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene032356 | MS.gene30166 | PPI |
MS.gene032356 | MS.gene027087 | PPI |
MS.gene032356 | MS.gene82727 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032356.t1 | MTR_8g461030 | 97.794 | 136 | 3 | 0 | 43 | 178 | 69 | 204 | 4.30e-100 | 287 |
MS.gene032356.t1 | MTR_4g092800 | 46.400 | 125 | 62 | 2 | 54 | 176 | 65 | 186 | 6.18e-34 | 119 |
MS.gene032356.t1 | MTR_2g020930 | 44.000 | 125 | 65 | 2 | 54 | 176 | 11 | 132 | 4.25e-31 | 110 |
MS.gene032356.t1 | MTR_2g020950 | 40.650 | 123 | 68 | 2 | 56 | 176 | 12 | 131 | 1.13e-26 | 98.6 |
MS.gene032356.t1 | MTR_2g020900 | 35.878 | 131 | 72 | 4 | 53 | 176 | 17 | 142 | 8.50e-19 | 79.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032356.t1 | AT1G53670 | 79.528 | 127 | 26 | 0 | 49 | 175 | 69 | 195 | 7.89e-79 | 233 |
MS.gene032356.t1 | AT1G53670 | 74.803 | 127 | 25 | 1 | 49 | 175 | 69 | 188 | 4.79e-72 | 216 |
MS.gene032356.t1 | AT4G04800 | 45.161 | 124 | 63 | 2 | 55 | 176 | 51 | 171 | 2.98e-33 | 116 |
MS.gene032356.t1 | AT4G04830 | 41.732 | 127 | 69 | 2 | 54 | 178 | 11 | 134 | 1.85e-31 | 111 |
MS.gene032356.t1 | AT4G21840 | 45.082 | 122 | 62 | 2 | 55 | 174 | 18 | 136 | 4.01e-31 | 110 |
MS.gene032356.t1 | AT4G21830 | 45.082 | 122 | 62 | 2 | 55 | 174 | 16 | 134 | 4.76e-31 | 110 |
MS.gene032356.t1 | AT4G21830 | 45.082 | 122 | 62 | 2 | 55 | 174 | 19 | 137 | 7.17e-31 | 109 |
MS.gene032356.t1 | AT4G21860 | 42.222 | 135 | 73 | 2 | 44 | 176 | 66 | 197 | 9.22e-31 | 111 |
MS.gene032356.t1 | AT4G21860 | 42.222 | 135 | 73 | 2 | 44 | 176 | 66 | 197 | 9.22e-31 | 111 |
MS.gene032356.t1 | AT4G21860 | 42.222 | 135 | 73 | 2 | 44 | 176 | 66 | 197 | 9.22e-31 | 111 |
MS.gene032356.t1 | AT4G21850 | 43.443 | 122 | 64 | 2 | 55 | 174 | 19 | 137 | 1.66e-29 | 106 |
MS.gene032356.t1 | AT4G04810 | 40.945 | 127 | 70 | 2 | 54 | 178 | 11 | 134 | 6.13e-29 | 104 |
MS.gene032356.t1 | AT4G04840 | 39.024 | 123 | 70 | 2 | 54 | 174 | 27 | 146 | 3.12e-28 | 103 |
MS.gene032356.t1 | AT4G04830 | 37.008 | 127 | 65 | 3 | 54 | 178 | 11 | 124 | 2.24e-23 | 90.1 |
MS.gene032356.t1 | AT4G21860 | 43.902 | 82 | 46 | 0 | 37 | 118 | 59 | 140 | 7.37e-18 | 77.4 |
MS.gene032356.t1 | AT4G21850 | 43.902 | 82 | 45 | 1 | 55 | 136 | 19 | 99 | 1.09e-17 | 75.1 |
MS.gene032356.t1 | AT4G04810 | 39.744 | 78 | 47 | 0 | 54 | 131 | 11 | 88 | 1.50e-16 | 72.0 |
Find 37 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAACGTACTTACTCAAATA+AGG | 0.221767 | 8.2:-48679366 | None:intergenic |
ACTTCCTTGGTTTGAGCTTA+AGG | 0.254966 | 8.2:-48679816 | None:intergenic |
CTTCCTTGGTTTGAGCTTAA+GGG | 0.347472 | 8.2:-48679815 | None:intergenic |
GGATGGTGTCTGTGCTTTGC+AGG | 0.354391 | 8.2:+48678105 | MS.gene032356:CDS |
AGAGTTGTATGTTGGTTATA+AGG | 0.359796 | 8.2:+48677635 | MS.gene032356:CDS |
CAGACTGGAGTGGAATTAAT+AGG | 0.367916 | 8.2:+48677709 | MS.gene032356:CDS |
ATGGTAAGTCCCTTCAGTTT+TGG | 0.402394 | 8.2:-48679324 | None:intergenic |
TAACCAACATACAACTCTTC+AGG | 0.403528 | 8.2:-48677630 | None:intergenic |
ACCAAGTTTAATAGTGGAAC+TGG | 0.412251 | 8.2:+48679530 | MS.gene032356:CDS |
AAACAGCACATAGAACTTCT+TGG | 0.422864 | 8.2:-48679628 | None:intergenic |
ATTTGACTATCTTACTTCCT+TGG | 0.431236 | 8.2:-48679829 | None:intergenic |
CCATCTTATTACCAGCCAAT+TGG | 0.432412 | 8.2:+48679557 | MS.gene032356:CDS |
AAACGTACTTACTCAAATAA+GGG | 0.450131 | 8.2:-48679365 | None:intergenic |
AATCTTTAAGTGATGAAGAA+TGG | 0.463954 | 8.2:+48678148 | MS.gene032356:CDS |
GAAAACGTTACTGTATCAAC+AGG | 0.465505 | 8.2:+48679699 | MS.gene032356:CDS |
CCAATTGGCTGGTAATAAGA+TGG | 0.475719 | 8.2:-48679557 | None:intergenic |
TATGTTGGTTATAAGGTTGG+TGG | 0.476249 | 8.2:+48677642 | MS.gene032356:CDS |
TTGTATGTTGGTTATAAGGT+TGG | 0.485610 | 8.2:+48677639 | MS.gene032356:CDS |
GCGTGTTCCCGTCTTCAGAC+TGG | 0.494693 | 8.2:+48677694 | MS.gene032356:CDS |
TCATCTACCAAGTTTAATAG+TGG | 0.496314 | 8.2:+48679524 | MS.gene032356:CDS |
ACCAGTTCCACTATTAAACT+TGG | 0.499953 | 8.2:-48679531 | None:intergenic |
GGAACTGAGAGAGCTTTCAC+TGG | 0.500884 | 8.2:+48678216 | MS.gene032356:CDS |
AGCACATAGAACTTCTTGGC+GGG | 0.519401 | 8.2:-48679624 | None:intergenic |
GATGATGGCCCTCCACCCAC+AGG | 0.547765 | 8.2:+48679677 | MS.gene032356:CDS |
TACTGGAATACCAAAACTGA+AGG | 0.552699 | 8.2:+48679314 | MS.gene032356:CDS |
ATTCCACTCCAGTCTGAAGA+CGG | 0.575262 | 8.2:-48677702 | None:intergenic |
GCTGTTTGTGATGCTCATCT+CGG | 0.579337 | 8.2:+48679644 | MS.gene032356:CDS |
AGTTTAATAGTGGAACTGGT+TGG | 0.589954 | 8.2:+48679534 | MS.gene032356:CDS |
TTCCACTCCAGTCTGAAGAC+GGG | 0.596459 | 8.2:-48677701 | None:intergenic |
TTCCCGTCTTCAGACTGGAG+TGG | 0.617015 | 8.2:+48677699 | MS.gene032356:CDS |
GGACCTGAAGAGTTGTATGT+TGG | 0.631845 | 8.2:+48677627 | MS.gene032356:CDS |
GCACATAGAACTTCTTGGCG+GGG | 0.632748 | 8.2:-48679623 | None:intergenic |
CTTCCCTTAAGCTCAAACCA+AGG | 0.648370 | 8.2:+48679812 | MS.gene032356:CDS |
GTGTGTCACAGCATATGCAA+TGG | 0.652916 | 8.2:-48679343 | None:intergenic |
ACTGGAATACCAAAACTGAA+GGG | 0.657265 | 8.2:+48679315 | MS.gene032356:CDS |
GAACTGAGAGAGCTTTCACT+GGG | 0.658532 | 8.2:+48678217 | MS.gene032356:CDS |
CAGCACATAGAACTTCTTGG+CGG | 0.663820 | 8.2:-48679625 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CTTATTTTATCAAATTATTA+CGG | + | chr8.2:48678374-48678393 | MS.gene032356:intron | 10.0% |
!!! | TCGATAAATTTTAATTAAAT+AGG | - | chr8.2:48678510-48678529 | None:intergenic | 10.0% |
!!! | TCTAAAATGAATTAAAAAAA+CGG | - | chr8.2:48679291-48679310 | None:intergenic | 10.0% |
!! | CCTTTAATGTAAAATAAATT+TGG | - | chr8.2:48678551-48678570 | None:intergenic | 15.0% |
!! | TTTCAGAAGAAAAAAATATA+CGG | + | chr8.2:48677956-48677975 | MS.gene032356:intron | 15.0% |
!!! | ATTTTTTTTTTTCTTCTGAT+AGG | + | chr8.2:48678083-48678102 | MS.gene032356:intron | 15.0% |
!!! | CCAAATTTATTTTACATTAA+AGG | + | chr8.2:48678548-48678567 | MS.gene032356:intron | 15.0% |
!!! | TGTATCAAGATTTTTATATT+GGG | - | chr8.2:48679054-48679073 | None:intergenic | 15.0% |
!!! | TTTTTTTTTTTCTTCTGATA+GGG | + | chr8.2:48678084-48678103 | MS.gene032356:intron | 15.0% |
!! | TAAATAAATACCACAATATC+AGG | - | chr8.2:48679445-48679464 | None:intergenic | 20.0% |
!! | TGAAAAAAGTTTATAAAGAG+AGG | + | chr8.2:48678977-48678996 | MS.gene032356:intron | 20.0% |
!! | TTCTATATTTAAAAGAGGAA+AGG | + | chr8.2:48678951-48678970 | MS.gene032356:intron | 20.0% |
!!! | ATGAACAATTTTATGTTACT+CGG | + | chr8.2:48678187-48678206 | MS.gene032356:CDS | 20.0% |
!!! | CTCTTTTAAATATAGAACTT+GGG | - | chr8.2:48678948-48678967 | None:intergenic | 20.0% |
!!! | GTGTATCAAGATTTTTATAT+TGG | - | chr8.2:48679055-48679074 | None:intergenic | 20.0% |
!!! | TTATTTTACATTAAAGGACA+TGG | + | chr8.2:48678554-48678573 | MS.gene032356:intron | 20.0% |
! | AAAACGTACTTACTCAAATA+AGG | - | chr8.2:48679369-48679388 | None:intergenic | 25.0% |
! | AAACGTACTTACTCAAATAA+GGG | - | chr8.2:48679368-48679387 | None:intergenic | 25.0% |
! | AAATACATTTAACGTGTAGA+GGG | + | chr8.2:48677794-48677813 | MS.gene032356:intron | 25.0% |
! | AATCTTTAAGTGATGAAGAA+TGG | + | chr8.2:48678148-48678167 | MS.gene032356:CDS | 25.0% |
! | ATGGTACAAAAGTAAACTTT+AGG | - | chr8.2:48679165-48679184 | None:intergenic | 25.0% |
! | CCAAGTTCTATATTTAAAAG+AGG | + | chr8.2:48678946-48678965 | MS.gene032356:intron | 25.0% |
! | GTGATATATTAGTGATATTG+TGG | + | chr8.2:48679199-48679218 | MS.gene032356:intron | 25.0% |
! | TTAAATAGGCCTAAAAATGA+AGG | - | chr8.2:48678496-48678515 | None:intergenic | 25.0% |
! | TTACTAAGTTCAAGATGATT+CGG | - | chr8.2:48679484-48679503 | None:intergenic | 25.0% |
!! | AAACTTCCATCTTTTAAATG+CGG | - | chr8.2:48678640-48678659 | None:intergenic | 25.0% |
!! | AAAGAATCACTTGTTGAATT+GGG | + | chr8.2:48679723-48679742 | MS.gene032356:intron | 25.0% |
!! | AGATGTCTAAAATAAAAACC+AGG | - | chr8.2:48677825-48677844 | None:intergenic | 25.0% |
!! | ATACAATGAACAACTTTTGA+AGG | - | chr8.2:48678817-48678836 | None:intergenic | 25.0% |
!! | ATTTTATGTTACTCGGAAAA+AGG | + | chr8.2:48678194-48678213 | MS.gene032356:CDS | 25.0% |
!! | CCTCTTTTAAATATAGAACT+TGG | - | chr8.2:48678949-48678968 | None:intergenic | 25.0% |
!! | GATTTCACATTTTTACCAAT+TGG | - | chr8.2:48679575-48679594 | None:intergenic | 25.0% |
!! | GTAAAATAAATTTGGTGAAC+TGG | - | chr8.2:48678543-48678562 | None:intergenic | 25.0% |
!! | TAAAGAATCACTTGTTGAAT+TGG | + | chr8.2:48679722-48679741 | MS.gene032356:intron | 25.0% |
!! | TTTTATGTTACTCGGAAAAA+GGG | + | chr8.2:48678195-48678214 | MS.gene032356:CDS | 25.0% |
!!! | ACTAACTTTCCTTCATTTTT+AGG | + | chr8.2:48678484-48678503 | MS.gene032356:intron | 25.0% |
!!! | GTCTAAAAGTTTGTTTGTTT+TGG | + | chr8.2:48679776-48679795 | MS.gene032356:intron | 25.0% |
!!! | TAATTCATTTTAGAGAGTAC+TGG | + | chr8.2:48679297-48679316 | MS.gene032356:intron | 25.0% |
AATACATTTAACGTGTAGAG+GGG | + | chr8.2:48677795-48677814 | MS.gene032356:intron | 30.0% | |
ATCCTTGTATCTTTCATTTC+AGG | - | chr8.2:48678857-48678876 | None:intergenic | 30.0% | |
ATTAAACTTGGTAGATGATC+TGG | - | chr8.2:48679522-48679541 | None:intergenic | 30.0% | |
GAAATACATTTAACGTGTAG+AGG | + | chr8.2:48677793-48677812 | MS.gene032356:intron | 30.0% | |
TAAACTTTAGGCACAAGATA+TGG | - | chr8.2:48679153-48679172 | None:intergenic | 30.0% | |
TACCTGAAATGAAAGATACA+AGG | + | chr8.2:48678852-48678871 | MS.gene032356:intron | 30.0% | |
TACTAAGTTCAAGATGATTC+GGG | - | chr8.2:48679483-48679502 | None:intergenic | 30.0% | |
TATCAAATTATTACGGACCT+TGG | + | chr8.2:48678381-48678400 | MS.gene032356:intron | 30.0% | |
TCATCTACCAAGTTTAATAG+TGG | + | chr8.2:48679524-48679543 | MS.gene032356:CDS | 30.0% | |
! | AGAGTTGTATGTTGGTTATA+AGG | + | chr8.2:48677635-48677654 | MS.gene032356:CDS | 30.0% |
! | TAGAGTACCTGAATCATATA+TGG | - | chr8.2:48679123-48679142 | None:intergenic | 30.0% |
! | TGGGTTTCTTTTCAATAATG+TGG | - | chr8.2:48678929-48678948 | None:intergenic | 30.0% |
! | TTGTATGTTGGTTATAAGGT+TGG | + | chr8.2:48677639-48677658 | MS.gene032356:CDS | 30.0% |
!! | AGTTTACTTTTGTACCATGT+TGG | + | chr8.2:48679167-48679186 | MS.gene032356:intron | 30.0% |
!!! | TTTTTTTCTTCTGATAGGGA+TGG | + | chr8.2:48678088-48678107 | MS.gene032356:intron | 30.0% |
AAACAGCACATAGAACTTCT+TGG | - | chr8.2:48679631-48679650 | None:intergenic | 35.0% | |
ACCAGTTCCACTATTAAACT+TGG | - | chr8.2:48679534-48679553 | None:intergenic | 35.0% | |
ACTGGAATACCAAAACTGAA+GGG | + | chr8.2:48679315-48679334 | MS.gene032356:CDS | 35.0% | |
AGACAAATGTGAGCTTATAC+AGG | - | chr8.2:48679760-48679779 | None:intergenic | 35.0% | |
AGTAAAGTAGTAGCTACTTC+TGG | + | chr8.2:48678707-48678726 | MS.gene032356:intron | 35.0% | |
ATTGCAGTTGTGTTCACAAA+TGG | + | chr8.2:48678675-48678694 | MS.gene032356:intron | 35.0% | |
CAAACAAAGTACAAGCGAAT+AGG | - | chr8.2:48679414-48679433 | None:intergenic | 35.0% | |
GAAAACGTTACTGTATCAAC+AGG | + | chr8.2:48679699-48679718 | MS.gene032356:CDS | 35.0% | |
GCAATATGTATGATGTCCAT+TGG | - | chr8.2:48678757-48678776 | None:intergenic | 35.0% | |
TAACCAACATACAACTCTTC+AGG | - | chr8.2:48677633-48677652 | None:intergenic | 35.0% | |
TACTGGAATACCAAAACTGA+AGG | + | chr8.2:48679314-48679333 | MS.gene032356:CDS | 35.0% | |
TGAGTAAGTACCTGATATTG+TGG | + | chr8.2:48679432-48679451 | MS.gene032356:intron | 35.0% | |
TGATATTGTGGTATGATTGC+TGG | + | chr8.2:48679211-48679230 | MS.gene032356:intron | 35.0% | |
TGTTCATTGTATTTCGCTTG+TGG | + | chr8.2:48678825-48678844 | MS.gene032356:intron | 35.0% | |
TTGATGCCGCATTTAAAAGA+TGG | + | chr8.2:48678631-48678650 | MS.gene032356:intron | 35.0% | |
! | ACCAAGTTTAATAGTGGAAC+TGG | + | chr8.2:48679530-48679549 | MS.gene032356:CDS | 35.0% |
! | AGTTTAATAGTGGAACTGGT+TGG | + | chr8.2:48679534-48679553 | MS.gene032356:CDS | 35.0% |
! | ATACAGTAACGTTTTCCTGT+GGG | - | chr8.2:48679695-48679714 | None:intergenic | 35.0% |
! | TATGTTGGTTATAAGGTTGG+TGG | + | chr8.2:48677642-48677661 | MS.gene032356:CDS | 35.0% |
! | TCACATTTTTACCAATTGGC+TGG | - | chr8.2:48679571-48679590 | None:intergenic | 35.0% |
! | TTGGTGTCCATATATGATTC+AGG | + | chr8.2:48679113-48679132 | MS.gene032356:intron | 35.0% |
!! | ATCACTTTAGAGTACCAACA+TGG | - | chr8.2:48679184-48679203 | None:intergenic | 35.0% |
!! | CAATGCTTGCTGTTTAAAGT+TGG | + | chr8.2:48677746-48677765 | MS.gene032356:intron | 35.0% |
!! | CTTGCTGTTTAAAGTTGGTT+GGG | + | chr8.2:48677751-48677770 | MS.gene032356:intron | 35.0% |
!!! | AGTTTTTTAGCTCTCACCAA+TGG | + | chr8.2:48678738-48678757 | MS.gene032356:intron | 35.0% |
!!! | CTCTATGCTATTTTCAGTGA+TGG | + | chr8.2:48677843-48677862 | MS.gene032356:intron | 35.0% |
ACAAGCAAGTCAAAAAGCCA+TGG | - | chr8.2:48678453-48678472 | None:intergenic | 40.0% | |
ACCAACACAGACATAGACAA+CGG | - | chr8.2:48678415-48678434 | None:intergenic | 40.0% | |
ATAGAGATAAACACCTGCAG+TGG | + | chr8.2:48678044-48678063 | MS.gene032356:intron | 40.0% | |
CAAATTATTACGGACCTTGG+TGG | + | chr8.2:48678384-48678403 | MS.gene032356:intron | 40.0% | |
CAGACTGGAGTGGAATTAAT+AGG | + | chr8.2:48677709-48677728 | MS.gene032356:CDS | 40.0% | |
CCAATTGGCTGGTAATAAGA+TGG | - | chr8.2:48679560-48679579 | None:intergenic | 40.0% | |
CCATCTTATTACCAGCCAAT+TGG | + | chr8.2:48679557-48679576 | MS.gene032356:CDS | 40.0% | |
GAACACAACTGCAATCAATG+AGG | - | chr8.2:48678670-48678689 | None:intergenic | 40.0% | |
GCCTTTCAATTCTTCCAAGT+CGG | + | chr8.2:48679008-48679027 | MS.gene032356:intron | 40.0% | |
TAATACACTAGACCAAGCAC+AGG | - | chr8.2:48677910-48677929 | None:intergenic | 40.0% | |
! | ACTTCCTTGGTTTGAGCTTA+AGG | - | chr8.2:48679819-48679838 | None:intergenic | 40.0% |
! | ATGGTAAGTCCCTTCAGTTT+TGG | - | chr8.2:48679327-48679346 | None:intergenic | 40.0% |
! | CACTGGGTGAGTTTAAGATT+GGG | + | chr8.2:48678233-48678252 | MS.gene032356:intron | 40.0% |
! | CTCGGACACATTTTTGATGA+TGG | + | chr8.2:48679662-48679681 | MS.gene032356:CDS | 40.0% |
! | CTTCCTTGGTTTGAGCTTAA+GGG | - | chr8.2:48679818-48679837 | None:intergenic | 40.0% |
! | GATACAGTAACGTTTTCCTG+TGG | - | chr8.2:48679696-48679715 | None:intergenic | 40.0% |
! | TCACTGGGTGAGTTTAAGAT+TGG | + | chr8.2:48678232-48678251 | MS.gene032356:intron | 40.0% |
!! | ACCGACTTGGAAGAATTGAA+AGG | - | chr8.2:48679012-48679031 | None:intergenic | 40.0% |
!! | GCTTGCTGTTTAAAGTTGGT+TGG | + | chr8.2:48677750-48677769 | MS.gene032356:intron | 40.0% |
!! | GTGCACTTGGCTTTAATACT+TGG | + | chr8.2:48679094-48679113 | MS.gene032356:intron | 40.0% |
!! | TCTTCCAAGTCGGTTTTGTA+AGG | + | chr8.2:48679018-48679037 | MS.gene032356:intron | 40.0% |
AAGCCATGGTAACACGACTT+CGG | - | chr8.2:48678439-48678458 | None:intergenic | 45.0% | |
ACATTTAACGTGTAGAGGGG+TGG | + | chr8.2:48677798-48677817 | MS.gene032356:intron | 45.0% | |
AGCACATAGAACTTCTTGGC+GGG | - | chr8.2:48679627-48679646 | None:intergenic | 45.0% | |
ATTCCACTCCAGTCTGAAGA+CGG | - | chr8.2:48677705-48677724 | None:intergenic | 45.0% | |
CAGCACATAGAACTTCTTGG+CGG | - | chr8.2:48679628-48679647 | None:intergenic | 45.0% | |
CTTCCCTTAAGCTCAAACCA+AGG | + | chr8.2:48679812-48679831 | MS.gene032356:CDS | 45.0% | |
GAACTGAGAGAGCTTTCACT+GGG | + | chr8.2:48678217-48678236 | MS.gene032356:CDS | 45.0% | |
GAGTGGAATTAATAGGCGTG+GGG | + | chr8.2:48677716-48677735 | MS.gene032356:intron | 45.0% | |
GCTATGTAGCAGCGACATTT+CGG | + | chr8.2:48678307-48678326 | MS.gene032356:intron | 45.0% | |
GCTGTTTGTGATGCTCATCT+CGG | + | chr8.2:48679644-48679663 | MS.gene032356:CDS | 45.0% | |
GGACCTGAAGAGTTGTATGT+TGG | + | chr8.2:48677627-48677646 | MS.gene032356:CDS | 45.0% | |
GGAGTGGAATTAATAGGCGT+GGG | + | chr8.2:48677715-48677734 | MS.gene032356:intron | 45.0% | |
GTGTGTCACAGCATATGCAA+TGG | - | chr8.2:48679346-48679365 | None:intergenic | 45.0% | |
TCCGTTGTCTATGTCTGTGT+TGG | + | chr8.2:48678411-48678430 | MS.gene032356:intron | 45.0% | |
TCGTCCTTACAAAACCGACT+TGG | - | chr8.2:48679025-48679044 | None:intergenic | 45.0% | |
TGGAAGAATTGAAAGGCGAC+AGG | - | chr8.2:48679005-48679024 | None:intergenic | 45.0% | |
TGGAGTGGAATTAATAGGCG+TGG | + | chr8.2:48677714-48677733 | MS.gene032356:intron | 45.0% | |
!! | TTTATTTAATCTAATATAAA+TGG | + | chr8.2:48679457-48679476 | MS.gene032356:intron | 5.0% |
ACCAAGCACAGGAGATGCAA+AGG | - | chr8.2:48677899-48677918 | None:intergenic | 50.0% | |
AGACAACGGACATACCACCA+AGG | - | chr8.2:48678401-48678420 | None:intergenic | 50.0% | |
GAGTCAGTTTCGTGTGCACT+TGG | + | chr8.2:48679081-48679100 | MS.gene032356:intron | 50.0% | |
GCACATAGAACTTCTTGGCG+GGG | - | chr8.2:48679626-48679645 | None:intergenic | 50.0% | |
GGAACTGAGAGAGCTTTCAC+TGG | + | chr8.2:48678216-48678235 | MS.gene032356:CDS | 50.0% | |
TCCTTTGCATCTCCTGTGCT+TGG | + | chr8.2:48677895-48677914 | MS.gene032356:intron | 50.0% | |
TTCCACTCCAGTCTGAAGAC+GGG | - | chr8.2:48677704-48677723 | None:intergenic | 50.0% | |
! | AACGTTTTCCTGTGGGTGGA+GGG | - | chr8.2:48679688-48679707 | None:intergenic | 50.0% |
! | CAGTAACGTTTTCCTGTGGG+TGG | - | chr8.2:48679692-48679711 | None:intergenic | 50.0% |
! | TAACGTTTTCCTGTGGGTGG+AGG | - | chr8.2:48679689-48679708 | None:intergenic | 50.0% |
GGATGGTGTCTGTGCTTTGC+AGG | + | chr8.2:48678105-48678124 | MS.gene032356:CDS | 55.0% | |
GTGCCGAAGTCGTGTTACCA+TGG | + | chr8.2:48678433-48678452 | MS.gene032356:intron | 55.0% | |
TTCCCGTCTTCAGACTGGAG+TGG | + | chr8.2:48677699-48677718 | MS.gene032356:CDS | 55.0% | |
! | GACACTGTATGTGCCACTGC+AGG | - | chr8.2:48678060-48678079 | None:intergenic | 55.0% |
!! | AGGACATGGTGCTGCATAGC+TGG | + | chr8.2:48678568-48678587 | MS.gene032356:intron | 55.0% |
AACGTGTAGAGGGGTGGTCC+TGG | + | chr8.2:48677804-48677823 | MS.gene032356:intron | 60.0% | |
GCGTGTTCCCGTCTTCAGAC+TGG | + | chr8.2:48677694-48677713 | MS.gene032356:CDS | 60.0% | |
! | GATGATGGCCCTCCACCCAC+AGG | + | chr8.2:48679677-48679696 | MS.gene032356:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 48677625 | 48679840 | 48677625 | ID=MS.gene032356 |
chr8.2 | mRNA | 48677625 | 48679840 | 48677625 | ID=MS.gene032356.t1;Parent=MS.gene032356 |
chr8.2 | exon | 48677625 | 48677732 | 48677625 | ID=MS.gene032356.t1.exon1;Parent=MS.gene032356.t1 |
chr8.2 | CDS | 48677625 | 48677732 | 48677625 | ID=cds.MS.gene032356.t1;Parent=MS.gene032356.t1 |
chr8.2 | exon | 48678105 | 48678238 | 48678105 | ID=MS.gene032356.t1.exon2;Parent=MS.gene032356.t1 |
chr8.2 | CDS | 48678105 | 48678238 | 48678105 | ID=cds.MS.gene032356.t1;Parent=MS.gene032356.t1 |
chr8.2 | exon | 48679310 | 48679375 | 48679310 | ID=MS.gene032356.t1.exon3;Parent=MS.gene032356.t1 |
chr8.2 | CDS | 48679310 | 48679375 | 48679310 | ID=cds.MS.gene032356.t1;Parent=MS.gene032356.t1 |
chr8.2 | exon | 48679523 | 48679720 | 48679523 | ID=MS.gene032356.t1.exon4;Parent=MS.gene032356.t1 |
chr8.2 | CDS | 48679523 | 48679720 | 48679523 | ID=cds.MS.gene032356.t1;Parent=MS.gene032356.t1 |
chr8.2 | exon | 48679810 | 48679840 | 48679810 | ID=MS.gene032356.t1.exon5;Parent=MS.gene032356.t1 |
chr8.2 | CDS | 48679810 | 48679840 | 48679810 | ID=cds.MS.gene032356.t1;Parent=MS.gene032356.t1 |
Gene Sequence |
Protein sequence |